ecell-devel Mailing List for E-Cell System

Hello,

I think I've found another bug in the session monitor.  When I try to load
an ".ess" file into the monitor I get the following error:

Loading Script file
/home/erin/Desktop/Mitochondrion-20100316/modelingFiles/seahorseExperiment.ess

Can't load
[/home/erin/Desktop/Mitochondrion-20100316/modelingFiles/seahorseExperiment.ess]
Traceback (most recent call last):

  File "/usr/lib/python2.6/dist-packages/ecell/ui/osogo/MainWindow.py", line
537, in __loadData
    self.theSession.loadScript( aFileName )

  File
"/usr/lib/python2.6/dist-packages/ecell/ui/osogo/GtkSessionMonitor.py", line
552, in loadScript
    Session.loadScript (self, ecs, parameters )

AttributeError: class Session has no attribute 'loadScript'

I'm using E-Cell 3.2.0p2 and Ubuntu Linux 9.10.

Thanks,

Erin


-- 
Erin Rachael Shellman
The University of Michigan
Bioinformatics PhD Candidate
http://www.erinshellman.com
she...@um...
(937) 321.1129

The GUI interface apparently got stuck because the step interval of
the stepper ended up being excessively large with little activities of
the associated processes. You need to set MaxStepInterval to a value
large enough in such cases.

-- moriyoshi

On Tue, Mar 30, 2010 at 12:47 AM, Erin <she...@um...> wrote:
> Hello,
>
> I'm having a lot of problems developing models because when I try to
> test them the Osogo session monitor hangs and crashes.  To simplify I
> tried to use the sample em file from page 10 of the E-Cell handbook
> ("ecell3-users-manual-0606.pdf"), however this simple em also crashes
> the Osago session monitor when I try to run the model.  I get no
> errors when loading the model.  I'm not sure how to get an error log
> when this happens so I can't be more specific, but I recommend that
> you try to run the sample em also and see whether it causes the
> monitor to hang.
>
> I am using E-Cell 3.2.0p1 on Ubuntu 9.10.
>
> Thank you,
>
> Erin
>
> The em I'm using from page 10 is below:
>
> Stepper ODEStepper( ODE_1 )
>   {
>           # no property
>   }
>   System System( / )
>   {
>           StepperID       ODE_1;
>
>           Variable Variable( SIZE )
>           {
>                   Value   1e-18;
>           }
>
>           Variable Variable( S )
>           {
>                   Value   10000;
>           }
>
>           Variable Variable( P )
>           {
>                   Value   0;
>           }
>
>           Process MassActionFluxProcess( E )
>           {
>                   Name "A mass action from S to P."
>                   k     1.0;
>
>                   VariableReferenceList [ S0 :.:S -1 ]
>                                         [ P0 :.:P 1 ];
>           }
>  }
>
> --
> Erin Rachael Shellman
> The University of Michigan
> Bioinformatics PhD Candidate
> http://www.erinshellman.com
> she...@um...
> (937) 321.1129
>
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