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From: Koichi T. <sh...@e-...> - 2006-12-17 04:37:04
|
Hei Petteri, Great work. Testing is important. I appreciate it. Two suggestions; - Kazunari Kaizu may have made a simple test suite for ODE solvers somewhere. He might be able to pass it for you incorporating it as part of yours. - Satya, if some modules don't work on some platforms, these should raise an exception when imported, not when called. We've got enough feedbacks from win users complaining they cannot run Session Manager. sha > Hi Petteri, > > Thank you for your efforts. For Windows please use the newer version of > E-Cell, which can be found at: > http://prdownloads.sourceforge.net/ecell/ecell-3.1.105a-gtk%2Bpython.i386.exe?download > Currently, E-Cell does not support GA and SessionManager on Windows > because we are lacking some essential Python modules for the platform. > > satya > > >> Hei, >> >> In preparation to using `doc/samples' as test input data, I gave them >> a try on Wintel (ecell-3.1.103-gtk+python.i386.exe). Please see below >> for summary. Most of the samples don't have Python file to run them >> from command line. I could probably conjure simple ones on my own. >> However, the authors of `ga', `sessionmanager' and `simple' should >> have a look at those and fix them. Or admin should remove them >> altogether because such broken samples do no good and can be >> misleading in the worst case. >> >> Please propose how to proceed. >> >> -- >> Petteri >> >> ====== branchG: NOK >> >> - no run.py file >> >> ===== CoupledOscillator: NOK >> >> - no run.py file >> >> ===== Drosophila: OK >> >> ===== Drosophila-cpp: OK >> >> ===== ga: NOK >> >> ecell3-session-manager ga.py >> Traceback (most recent call last): >> File "ecell3-session-manager.merge", line 116, in ? >> ImportError: No module named SessionManager >> >> ===== Heatshock: NOK >> >> - no run.py file >> >> ===== LTD: OK >> >> ===== Pendulum: NOK >> >> - no run.py file >> >> ===== sessionmanager: NOK >> >> ecell3-session-manager ems.py >> Traceback (most recent call last): >> File \"ecell3-session-manager.merge\", line 116, in ? >> ImportError: No module named SessionManager >> >> ===== simple: NOK >> >> ecell3-session run.py >> t= 0.0 >> S:Value= 1000000.0 >> PyECS: SIGSEGV. Invalid memory reference. >> >> ===== SSystem: NOK >> >> - no run.py file >> >> ===== tauleap: NOK >> >> - no run.py file >> >> ==== Toy_Hybrid: NOK >> >> - no run.py file >> >> >> >> ------------------------------------------------------------------------- >> Take Surveys. Earn Cash. Influence the Future of IT >> Join SourceForge.net's Techsay panel and you'll get the chance to share your >> opinions on IT & business topics through brief surveys - and earn cash >> http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV >> _______________________________________________ >> Ecell-devel mailing list >> Ece...@li... >> https://lists.sourceforge.net/lists/listinfo/ecell-devel >> >> >> > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share your > opinions on IT & business topics through brief surveys - and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > Ecell-devel mailing list > Ece...@li... > https://lists.sourceforge.net/lists/listinfo/ecell-devel |
|
From: Satya A. <sa...@sf...> - 2006-12-16 23:39:01
|
Hi Petteri, Thank you for your efforts. For Windows please use the newer version of E-Cell, which can be found at: http://prdownloads.sourceforge.net/ecell/ecell-3.1.105a-gtk%2Bpython.i386.exe?download Currently, E-Cell does not support GA and SessionManager on Windows because we are lacking some essential Python modules for the platform. satya > Hei, > > In preparation to using `doc/samples' as test input data, I gave them > a try on Wintel (ecell-3.1.103-gtk+python.i386.exe). Please see below > for summary. Most of the samples don't have Python file to run them > from command line. I could probably conjure simple ones on my own. > However, the authors of `ga', `sessionmanager' and `simple' should > have a look at those and fix them. Or admin should remove them > altogether because such broken samples do no good and can be > misleading in the worst case. > > Please propose how to proceed. > > -- > Petteri > > ====== branchG: NOK > > - no run.py file > > ===== CoupledOscillator: NOK > > - no run.py file > > ===== Drosophila: OK > > ===== Drosophila-cpp: OK > > ===== ga: NOK > > ecell3-session-manager ga.py > Traceback (most recent call last): > File "ecell3-session-manager.merge", line 116, in ? > ImportError: No module named SessionManager > > ===== Heatshock: NOK > > - no run.py file > > ===== LTD: OK > > ===== Pendulum: NOK > > - no run.py file > > ===== sessionmanager: NOK > > ecell3-session-manager ems.py > Traceback (most recent call last): > File \"ecell3-session-manager.merge\", line 116, in ? > ImportError: No module named SessionManager > > ===== simple: NOK > > ecell3-session run.py > t= 0.0 > S:Value= 1000000.0 > PyECS: SIGSEGV. Invalid memory reference. > > ===== SSystem: NOK > > - no run.py file > > ===== tauleap: NOK > > - no run.py file > > ==== Toy_Hybrid: NOK > > - no run.py file > > > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share your > opinions on IT & business topics through brief surveys - and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > Ecell-devel mailing list > Ece...@li... > https://lists.sourceforge.net/lists/listinfo/ecell-devel > > > |
|
From: Petteri K. <pet...@us...> - 2006-12-16 16:21:14
|
Hei, In preparation to using `doc/samples' as test input data, I gave them a try on Wintel (ecell-3.1.103-gtk+python.i386.exe). Please see below for summary. Most of the samples don't have Python file to run them from command line. I could probably conjure simple ones on my own. However, the authors of `ga', `sessionmanager' and `simple' should have a look at those and fix them. Or admin should remove them altogether because such broken samples do no good and can be misleading in the worst case. Please propose how to proceed. -- Petteri ====== branchG: NOK - no run.py file ===== CoupledOscillator: NOK - no run.py file ===== Drosophila: OK ===== Drosophila-cpp: OK ===== ga: NOK ecell3-session-manager ga.py Traceback (most recent call last): File "ecell3-session-manager.merge", line 116, in ? ImportError: No module named SessionManager ===== Heatshock: NOK - no run.py file ===== LTD: OK ===== Pendulum: NOK - no run.py file ===== sessionmanager: NOK ecell3-session-manager ems.py Traceback (most recent call last): File \"ecell3-session-manager.merge\", line 116, in ? ImportError: No module named SessionManager ===== simple: NOK ecell3-session run.py t= 0.0 S:Value= 1000000.0 PyECS: SIGSEGV. Invalid memory reference. ===== SSystem: NOK - no run.py file ===== tauleap: NOK - no run.py file ==== Toy_Hybrid: NOK - no run.py file |
|
From: Koichi T. <sh...@e-...> - 2006-12-07 05:37:02
|
That looks right.
Can you commit the following? I don't have a write access to
svn for some unknown reason right now.
AM_CHECK_PYTHON_HEADERS(,[AC_MSG_ERROR([Failed to find Python headers.])])
sha
> Hi,
>
> Replace ecell/configure.in as the following and please try again:
>
> Index: ecell/configure.in
> ===================================================================
> --- ecell/configure.in (revision 2631)
> +++ ecell/configure.in (working copy)
> @@ -250,7 +250,7 @@
> AC_SUBST(DMTOOL_INCLUDE_DIR)
>
>
> -AM_CHECK_PYTHON_HEADERS(,[AC_MSG_ERROR([AM_CHECK_PYTHON_HEADERS failed.])])
> +AM_CHECK_PYTHON_HEADERS(,[AC_MSG_ERROR([some other error messages])])
>
> dnl numpy package.
> dnl find arrayobject.h.
>
> However, I donnot know much about Autoconf/Automake.
> Could some one confirm this?
>
>
> Kaizu
>
> 2006/12/6, efe...@eb... <efe...@eb...>:
>> Hi,
>>
>> I get a syntax error under Linux/i386 with svn revision 2631:
>>
>> ...
>> checking for headers required to compile python extensions...
>> ./configure: line 24170: syntax error near unexpected token `('
>> ./configure: line 24170: `case "(($ac_try" in'
>> configure: error: ./configure failed for ecell
>> error: Bad exit status from /home/eric/rpm/tmp/rpm-tmp.26251 (%build)
>>
>> Do you confirm?
>> Eric
>>
>>
>> -------------------------------------------------------------------------
>> Take Surveys. Earn Cash. Influence the Future of IT
>> Join SourceForge.net's Techsay panel and you'll get the chance to share your
>> opinions on IT & business topics through brief surveys - and earn cash
>> http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV
>> _______________________________________________
>> Ecell-devel mailing list
>> Ece...@li...
>> https://lists.sourceforge.net/lists/listinfo/ecell-devel
>>
>
> -------------------------------------------------------------------------
> Take Surveys. Earn Cash. Influence the Future of IT
> Join SourceForge.net's Techsay panel and you'll get the chance to share your
> opinions on IT & business topics through brief surveys - and earn cash
> http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV
> _______________________________________________
> Ecell-devel mailing list
> Ece...@li...
> https://lists.sourceforge.net/lists/listinfo/ecell-devel
|
|
From: Kazunari K. <kw...@gm...> - 2006-12-07 04:34:24
|
Hi,
Replace ecell/configure.in as the following and please try again:
Index: ecell/configure.in
===================================================================
--- ecell/configure.in (revision 2631)
+++ ecell/configure.in (working copy)
@@ -250,7 +250,7 @@
AC_SUBST(DMTOOL_INCLUDE_DIR)
-AM_CHECK_PYTHON_HEADERS(,[AC_MSG_ERROR([AM_CHECK_PYTHON_HEADERS failed.])])
+AM_CHECK_PYTHON_HEADERS(,[AC_MSG_ERROR([some other error messages])])
dnl numpy package.
dnl find arrayobject.h.
However, I donnot know much about Autoconf/Automake.
Could some one confirm this?
Kaizu
2006/12/6, efe...@eb... <efe...@eb...>:
> Hi,
>
> I get a syntax error under Linux/i386 with svn revision 2631:
>
> ...
> checking for headers required to compile python extensions...
> ./configure: line 24170: syntax error near unexpected token `('
> ./configure: line 24170: `case "(($ac_try" in'
> configure: error: ./configure failed for ecell
> error: Bad exit status from /home/eric/rpm/tmp/rpm-tmp.26251 (%build)
>
> Do you confirm?
> Eric
>
>
> -------------------------------------------------------------------------
> Take Surveys. Earn Cash. Influence the Future of IT
> Join SourceForge.net's Techsay panel and you'll get the chance to share your
> opinions on IT & business topics through brief surveys - and earn cash
> http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV
> _______________________________________________
> Ecell-devel mailing list
> Ece...@li...
> https://lists.sourceforge.net/lists/listinfo/ecell-devel
>
|
|
From: Kazunari K. <kw...@gm...> - 2006-12-06 12:06:14
|
I also get the same error on Ubuntu 6.10.
I assume that it is related with the version of autoconf
and is caused by AC_TRY in ecell/acinclude.m4.
Kaizu
2006/12/6, efe...@eb... <efe...@eb...>:
> Hi,
>
> I get a syntax error under Linux/i386 with svn revision 2631:
>
> ...
> checking for headers required to compile python extensions...
> ./configure: line 24170: syntax error near unexpected token `('
> ./configure: line 24170: `case "(($ac_try" in'
> configure: error: ./configure failed for ecell
> error: Bad exit status from /home/eric/rpm/tmp/rpm-tmp.26251 (%build)
>
> Do you confirm?
> Eric
>
>
> -------------------------------------------------------------------------
> Take Surveys. Earn Cash. Influence the Future of IT
> Join SourceForge.net's Techsay panel and you'll get the chance to share your
> opinions on IT & business topics through brief surveys - and earn cash
> http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV
> _______________________________________________
> Ecell-devel mailing list
> Ece...@li...
> https://lists.sourceforge.net/lists/listinfo/ecell-devel
>
|
|
From: <efe...@eb...> - 2006-12-06 11:55:29
|
Hi,
I get a syntax error under Linux/i386 with svn revision 2631:
...
checking for headers required to compile python extensions...
./configure: line 24170: syntax error near unexpected token `('
./configure: line 24170: `case "(($ac_try" in'
configure: error: ./configure failed for ecell
error: Bad exit status from /home/eric/rpm/tmp/rpm-tmp.26251 (%build)
Do you confirm?
Eric
|