| 77 |
demuxbyname.sh Exception in thread "main" java.lang.AssertionError: 22, 23, '^@'=0 |
1.0 |
open |
|
2025-06-05
|
2025-06-05
|
|
| 76 |
dupedist value for AVITI machine |
1.0 |
open |
|
2025-04-15
|
2025-04-15
|
|
| 75 |
Parameter 'stats2' in rqcfilter2.sh is not recognized |
1.0 |
open |
|
2025-03-25
|
2025-03-27
|
|
| 74 |
Project website for BBMap appears to have disappeared |
1.0 |
open |
Brian Bushnell
|
2025-02-03
|
2025-04-28
|
|
| 73 |
repair.sh swaps sequences in the output fastqs |
1.0 |
open |
Brian Bushnell
|
2025-02-01
|
2025-02-01
|
|
| 72 |
java.lang.AssertionError with forcemerge=t |
1.0 |
open |
|
2025-01-24
|
2025-01-24
|
|
| 71 |
Issues when reading IDs with UMIs |
1.0 |
closed |
|
2025-01-10
|
2025-01-15
|
|
| 70 |
reformat.sh producing output with 4 reads having the same id |
1.0 |
closed |
|
2024-11-01
|
2025-01-15
|
|
| 69 |
reformat.sh vpair fails matching reads. |
1.0 |
open |
|
2024-05-15
|
2024-05-15
|
|
| 68 |
Deprecate basecov files in pileup.sh |
1.0 |
open |
|
2024-04-30
|
2024-04-30
|
|
| 67 |
sendsketch does not obey proxy settings |
1.0 |
open |
|
2024-04-24
|
2024-04-24
|
|
| 66 |
Stitching read pair R1 andf R2 sequences based on alignment from SAM/BAM |
1.0 |
open |
|
2024-02-15
|
2024-02-15
|
|
| 65 |
`refromat.sh` mode that does not change base quality scores |
1.0 |
open |
|
2024-02-09
|
2024-05-15
|
|
| 64 |
Propagation of internal error codes |
1.0 |
open |
Brian Bushnell
|
2023-11-15
|
2023-11-15
|
|
| 63 |
sortbyname.sh not creating out2 even when specified |
1.0 |
open |
Brian Bushnell
|
2023-11-15
|
2023-11-15
|
|
| 62 |
bbduk.sh with maq option and outs keeps low-quality mates |
1.0 |
open |
|
2023-10-31
|
2023-10-31
|
|
| 61 |
filtering all not microbial reads |
1.0 |
open |
|
2023-10-20
|
2023-10-20
|
|
| 60 |
Errors when compiling all Java classes in version 39.03 |
1.0 |
open |
|
2023-10-19
|
2023-10-19
|
|
| 59 |
bbduk.sh fails with error"java.lang.NoSuchMethodError: java.lang.Process.isAlive()Z" |
1.0 |
open |
|
2023-03-20
|
2023-03-20
|
|
| 58 |
Error from `taxtree.sh`: No level found for strain |
1.0 |
open |
|
2023-01-10
|
2023-01-10
|
|
| 57 |
taxtree.sh usage guide outdated? |
1.0 |
open |
|
2023-01-10
|
2023-01-10
|
|
| 56 |
dedupe.sh tries to access Index Integer.MAX_VALUE |
1.0 |
open |
|
2022-11-08
|
2022-11-08
|
|
| 55 |
java.lang.ClassNotFoundException: align2.BBSplitter |
1.0 |
open |
|
2022-08-03
|
2022-08-03
|
|
| 54 |
info about compatible java versions/benchmarks |
1.0 |
open |
|
2022-06-06
|
2022-08-04
|
|
| 53 |
pileup crashing |
1.0 |
open |
|
2022-02-26
|
2022-02-26
|
|