Activity for Reber
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Reber posted a comment on discussion TIES Help / Support
SOLVED While cleaning up our file server of old files, I got to our De-ID Software download folder and noticed a huge difference in the file sizes in the new De-ID and the older version we originally had been using. De-ID 6.24.5.2 61M De-ID 6.26.2.1 19M I deleted the newer version and replaced it with th original and deidentifying is working . I will contact De-ID Corp about this discrepancy.
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If it helps, I put wrapper in DEBUG mode. wrapper.log: DEBUG | wrapper | 2018/10/09 11:41:40 | Allocating a console for the service. DEBUG | wrapper | 2018/10/09 11:41:40 | Found console window. STATUS | wrapper | 2018/10/09 11:41:40 | --> Wrapper Started as Service STATUS | wrapper | 2018/10/09 11:41:40 | Java Service Wrapper Community Edition 32-bit 3.5.7 STATUS | wrapper | 2018/10/09 11:41:40 | Copyright (C) 1999-2010 Tanuki Software, Ltd. All Rights Reserved. STATUS | wrapper | 2018/10/09 11:41:40...
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Finally getting back to processing documents on the production server. I loaded a batch of documents via the "Delimited File Importer". Table ident_document shows them as "DEIDENTIFYING". I start up the DeID pipeline (We are using DeID Corp), the log showed a group of documents (100) being fetched, then immediately returns message "Invalid response from De-identifier. Exiting" Thinking maybe it was the documents loaded with the Delimited File Importer, I deleted those documents from ident_document...
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Did you ever resolve your issue with her-2 concept coding?
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All of a sudden we can no longer log into our TIES node. I've restarted everything including private/public tomcats and the databases. From JAVA Console: Java Web Start 11.151.2.12 x86_64 Using JRE version 1.8.0_151-b12 Java HotSpot(TM) 64-Bit Server VM User home directory = /Users/jpr101 c: clear console window f: finalize objects on finalization queue g: garbage collect h: display this help message m: print memory usage o: trigger logging p: reload proxy configuration q: hide console r: reload...
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Any update on this?
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I was not using the section type as we are loading the whole report into the tie.model.text column.
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Loaded 60000 progress notes. 100 deidentified and there it's stuck. I have restarted the pipeline and server.log for the deid process stops at "Pushing section types to Public database" 2017-09-18 13:19:28,339 [WrapperSimpleAppMain]CaTIES_MGHScrubberDeIdentifier:174 - Building Known Identifiers Config... 2017-09-18 13:19:28,340 [WrapperSimpleAppMain]CaTIES_MGHScrubberDeIdentifier:193 - Loading Saved Identifiers 2017-09-18 13:19:28,575 [WrapperSimpleAppMain]CaTIES_MGHScrubberDeIdentifier:226 - Names...
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Is there documentation available for adding new report types? Now that we have direct access to Epic's clarity database, we have several million Progress Notes, Procedures, etc that we'd like to run through TIES.
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MAJOR SUCCESS!! Loaded first report through bulk loader all the way through deid, coding and indexed.
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SOLVED! The config file does not like consecutive "|"'s. I had to insert a space between them. Working (for me) config file attached. Now on to actaully trying to read a data file, John
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Oliver, yours did not work for me. Exited with "java.lang.Exception: Incorrect configuration file format". Michael, this sample file did work and is waiting for image files to process. But I'm trying to generate a working config for reports. I had tried previously tweeking a copy of this file for reports, but have had no success.
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Does anyone have a working DelimitedDescriptor.cfg that works with v5.7 that they could share that I could use as an example?
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Hand generated the config file and still same error
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Sorry for the delay, I was out of the office for a few days. Tried that and the same error is generated. Does the header itself even get read (it is commented out)? I switched back to the SampleVirtualSlideDelimitedDescriptor.cfg, adding junk into the header file and the csv-pipe starts up and runs and sits there waiting for a file. I'm thinking something corrupted the config lines during a cut and paste operation. Will regenerate manually and test.
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OK, gave up on the v5.5 VM and installed the v5.7 VM. If I start the DelimterFileImporter with the SampleVIrtualSlideDelimiytedDescriptor.cfg (no data files present) in the caTIOES.properties file, the pipeline starts up and waits for data files. I modified caTIES.properties to use the DelimitedDescriptor.cfg (edited and attached) the pipeline immediately exits with the "Incorrect configuration file format" error.
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Changed the header to your example, still same error. Removed the top line "####### THIS IS TEXT CONFIG FILE FOR DELIMITED TEST DATA INCLUDED WITH TIES" and the blank line, now getting a different error (below). I'm guessing it read the config file and is now having issues with my csv file. I've attached the csv (manually de-id'd) file I'm using. I tried it with and without the supplied quotes quotes, ERROR ERROR STATUS | wrapper | 2017/07/18 15:49:37 | --> Wrapper Started as Daemon STATUS | wrapper...
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Copied the DelimitedDescriptor.cfg file from the online documentation and still getting the same error. ####### THIS IS TEXT CONFIG FILE FOR DELIMITED TEST DATA INCLUDED WITH TIES ---------------------------------------------------------------------------------------------- Include |Visible|PHI |Codeable |Indexable | Namespace | Attribute | Data Type | Custom Data |Pretty Name |Description ---------------------------------------------------------------------------------------------- true |true |true...
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Thanks, will update the configuration file and try again.
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While trying to test the Delimited File Importer on the provided 5.5 VM I'm getting the following error. The config file is the one that was distributed with it. I wrote the .csv file to match the expected inputas defined in the config file. Are there changes I was supposed to make to the config file? ties@ties-vm:/opt/ties/pipelines/DelimitedFileImporter/logs$ cat wrapper.log STATUS | wrapper | 2017/07/06 10:53:52 | --> Wrapper Started as Daemon STATUS | wrapper | 2017/07/06 10:53:52 | Java Service...
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Works, thanks for the quick fix.
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Cool, it's not much fault. My iMac just upgraded its java and I was afraid that broke it.
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Finally found users with an interest in TIES/TCRN. Went to add them and when I selected the "New User" button the following error was printed to the jave console: Exception in thread "TIES Event Dispatch Thread" java.lang.ClassCastException: edu.upmc.opi.caBIG.caTIES.client.vr.utils.widgets.JBooleanRadioButton cannot be cast to javax.swing.JCheckBox at edu.upmc.opi.caBIG.caTIES.client.vr.admin.views.TIES_LoginInformationForm.loadUI(TIES_LoginInformationForm.java:162) at edu.upmc.opi.caBIG.caTIES.client.vr.admin.dialogs.CaTIES_NewUserDialog.buildContentPanel(CaTIES_NewUserDialog.java:222)...
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I'm not seeing anything. 27th try was the charm I just deleted the log files, restarted...
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Having an issue with adding a new user. I had successfully added a user as a researcher....
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Having an issue with adding a new user. I had successfully added a user as a researcher....
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Is there any consideration in revisiting this? The researcher can already view the...
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TIES v5.6.2 While QAing search results I noticed that when doing a temporal query...
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As far as I can tell, yes. Original file size I had on private was 4.86MB, current...
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The v5.5 version works fine. Was able to view all fifty reports returned by the query....
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Nothing is making it to tomcatPub\caTIES.log when the report data fails. Java Console...
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Restarted both, am able to login and query, both tomcats stay up. Still having the...
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I'm also having problems with case sets I generated for DeID QA analysis. When I...
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Consistant with the same report within a search. It does show Patient Id, Gender,...
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Upgraded to v5.6. I do a search as an honest broker. Reports are returned, but when...
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When the reports are coded, what type coding is extracted and generated, SNOMED,...
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Thanks, that link worked fine. I tried the previouslly link in Firefox (was using...
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When I click on the link for the 5.6 download it's asking me where to put 5.1 VM...
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When exporting a case set to excel, the first item in the case set is missing from...
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LDAP is now working. I took a break for lunch, finished up a couple of other things,...
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Yes, I logged in as an administrator and set the account to use LDAP. I get authenticated,...
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Set REQUIRE_PWD_CHANGE col. value to 0 for all users, restarted tomcat, still wants...
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I'm getting authenticated, but TIES then wants me to change my password, which fails...
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Fixed. I had to change the principal line to: uid=@USERNAME@,ou=people,dc=jeffer...
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Trying to set-up ldap and all I'm managing to do is lock out the account I'm testing...
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Fixed, I let it install the public on the private and copied it over, modifying a...
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v5.5 was installed back in late March or early April. Haven't used for a few weeks...
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UI doesn't save server name changes
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Thanks, this was driving me crazy, will file a bug report. private port should remain...
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Found where to change it. Am able to go through the motions and change private server...
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What in the configuration is telling TIES to look on http://ties.jefferson.edu:90?...
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v5.5 private windows public linux all databases linux. When logged in as a researcher...
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Ok, then that was a painless upgrade.
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When trying to update the public server using the installer I get the following error...
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You were able to login into mysql from the installation server, but were you able...
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I can confirm TIES is working on Windows Server 2012 R2 Standard x64, at least the...
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Replaced caties.jar in the deied pipeline lib and all seems happy. thanks, John
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I'm not seeing anything either. Even went back to the original HL7 file and not seeing...
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I finally found one that won't process and kills the pipeline. But I'm not seeing...
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I've been in the process of doing random small batched of a 1000. So far I've narrowed...
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As a test I updated 'DEIDENTIFYING' to 'AAAADEIDENTIFYING' then changed the first...
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I was loading a batch of reports, but the deidentifier pipeline keeps exiting as...
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I tried creating a new user as an honest broker but get the following error. I was...
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We had a similar issue and was fixed by the following: "This is an issue with the...
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Went smoother then expected. Had to modify PATH variable to include java, add a JAVA_HOME...
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Do to licensing issues with Microsoft (My server was running in evaluation mode and...
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OK, keeping them on the private server sounds like a good idea to avoid conflicts....
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That was my issue. My pipelines are all running on the private server, so that's...
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Does indices/PRODINDEX have any part in searching? I'm seeing newly created files...
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Does indices/PRODINDEX have any part in searching? I'm seeing newly created files...
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All say IDLING in both ident_document and document.
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Should the indexer and coding pipelines have been moved to the public server?
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This is the first time I've loaded new reports since moving the public server. All...
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Could these error have to do with going through a proxy server?
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localhost_access_log.2015-06-23.txt clean all http code 200's caTIES.log clean except...
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FIXED!!! Including the mouseover. It wasn't that they didn't copy over correctly...
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Got rid of the original error of "java.lang.UnsupportedOperationException: Could...
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Just to confirm, the above settings worked for us at Jefferson and we are now querying...
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I moved my public tomcat to external (outside the DMZ) server. Switched it from Windows...
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Moved tomcatPub and public DB to external (outside our DMZ). Moved it from Windows...
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PS: The Data Cleanup that actually failed on me the other day, I reran and it completed...
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Yes, Control Panel now has the other Utilities. Being linux I can't create the full...
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Thanks Girish, The patch worked and TIES is now accessing the ctrm and public databases...
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Could not click the save button to execute the change of the public database, so...
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In preparation of moving our public instance of ties outside of our firewall I want...
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UPDATE Apache 2.4 Loaded mod_proxy and mod_proxy_ajp to httpd.conf LoadModule proxy_module...
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Is anyone accessing their TIES tomcat via apache's mod_proxy or mod_proxy_ajp? If...
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I'm in the beginning process of preparing to move the public server/db out of our...
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Successfully upgraded to v5.3! Went real smooth, stepped into bosses office to discuss...
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Ok, I'm php programmer myself, will take a look at your code and see about developing...
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Now that I ran a script to pad our report_id I have some reports with same record_id...
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Does an APi for TIES exist? We've been asked about the possibility of developing...
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Great, I'll modify future HL7's prior to loading to match the updated ones.
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Our report_id's from our coPATH system come in the format of of S96-1 and that is...
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Thanks working. As an FYI and for other users. The path to the caties.jar is tom...
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When trying to search by identifiers, either mr number or ssn, 0 patients are returned....
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Talked to my boss and he's OK'd the making of our TIES system part of the TCRN. I'll...
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Now that we have ~450K reports completely loaded, indexed and coded (actually 127...
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Great, that did it. Working now.
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From the caTIES.: 2015-04-06 11:04:46,813 WARN XMLCipher:? - Algorithm non-standard,...
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