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Commit Date  
[r20003] by hansonr

Jmol.___JmolVersion="14.3.7_2014.09.17"

code: further progress with fully asynchronous HTML5
-- all initial script loading and program start-up
-- general LOAD and SCRIPT command processing
-- minimization (static resource loading)
-- PNGJ file loading

 2014-09-17 03:03:54 Tree
[r20002] by hansonr
2014-09-16 23:58:38 Tree
[r20001] by hansonr

Jmol.___JmolVersion="14.3.7_2014.09.16"

bug fix: chainCaseSensitive ignored for select :a
bug fix: JmolData not reporting out properly

 2014-09-16 23:14:01 Tree
[r20000] by hansonr

Jmol.___JmolVersion="14.3.7_2014.09.15b"

bug fix: 14.3.7_2014.09.14 breaks nucleic acid rendering

 2014-09-15 15:03:23 Tree
[r19999] by hansonr

Jmol.___JmolVersion="14.3.7_2014.09.15"

bug fix: CARTOON OFF does not remove visibility flag for alpha carbons

 2014-09-15 14:09:46 Tree
[r19998] by hansonr
2014-09-14 18:49:21 Tree
[r19997] by hansonr

Jmol.___JmolVersion="14.3.7_2014.09.13"

bug fix: JSmol/HTML5 fails to show rockets
bug fix: setting structures after displaying rockets does not reset rockets correctly

bug fix: load *xxxx/val validation loading not working (14.3.7_2014.09.07)

new feature: load =xxxx/rna3d
-- mmCIF only
-- fetches http://rna.bgsu.edu/rna3dhub/loops/download/xxxx
-- hairpinLoops, internalLoops, junctions
-- allows for such constructs as:
select within(rna3d,"hairpinLoops")
select within(rna3d,"hairpinLoops where index=5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops.5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops")[5]
print x
{
_atoms : ({3023:3062 3639:3706})
_isres : true
_path : "internalLoops"
index : 5
units : "1S72|1|0|C|153,1S72|1|0|C|154,1S72|1|0|G|182,1S72|1|0|A|183,1S72|1|0|G|184"
}
y = x._atoms
select y

new feature: load =xxxx/val
new feature: load =xxxx/dom
-- extends PDBe validation/domain annotation to RCSB calls

new feature: load *xxxx/dssr
new feature: load *xxxx/rna3d
-- DSSR analysis extended to PDBe calls
-- RNA3D analysis extended to RCSB calls

 2014-09-14 18:46:35 Tree
[r19996] by hansonr

Jmol.___JmolVersion="14.3.7_2014.09.13"

bug fix: load *xxxx/val validation loading not working (14.3.7_2014.09.07)

new feature: load =xxxx/rna3d
-- mmCIF only
-- fetches http://rna.bgsu.edu/rna3dhub/loops/download/xxxx
-- hairpinLoops, internalLoops, junctions
-- allows for such constructs as:
select within(rna3d,"hairpinLoops")
select within(rna3d,"hairpinLoops where index=5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops.5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops")[5]
print x
{
_atoms : ({3023:3062 3639:3706})
_isres : true
_path : "internalLoops"
index : 5
units : "1S72|1|0|C|153,1S72|1|0|C|154,1S72|1|0|G|182,1S72|1|0|A|183,1S72|1|0|G|184"
}
y = x._atoms
select y

new feature: load =xxxx/val
new feature: load =xxxx/dom
-- extends PDBe validation/domain annotation to RCSB calls

new feature: load *xxxx/dssr
new feature: load *xxxx/rna3d
-- DSSR analysis extended to PDBe calls
-- RNA3D analysis extended to RCSB calls

 2014-09-14 02:18:20 Tree
[r19995] by hansonr

Jmol.___JmolVersion="14.3.7_2014.09.13"

bug fix: load *xxxx/val validation loading not working (14.3.7_2014.09.07)

new feature: load *xxxx/rna3d
new feature: load =xxxx/rna3d
-- mmCIF only
-- fetches http://rna.bgsu.edu/rna3dhub/loops/download/xxxx
-- hairpinLoops, internalLoops, junctions
-- allows for such constructs as:
select within(rna3d,"hairpinLoops")
select within(rna3d,"hairpinLoops where index=5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops.5")
print x
{
_atoms : ({3023:3062 3639:3706})
_isres : true
_path : "internalLoops"
index : 5
units : "1S72|1|0|C|153,1S72|1|0|C|154,1S72|1|0|G|182,1S72|1|0|A|183,1S72|1|0|G|184"
}
y = x._atoms
select y

new feature: load =xxxx/val
new feature: load =xxxx/dom
-- extends PDBe validation/domain annotation to RCSB

 2014-09-13 17:37:54 Tree
[r19994] by hansonr

Jmol.___JmolVersion="14.3.7_2014.09.13"

bug fix: load *xxxx/val validation loading not working (14.3.7_2014.09.07)

new feature: load *xxxx/rna3d
-- preliminary only (assumes _atom_site.label_seq_id same as _atom_site.auth_seq_id
and mmCIF only -- thus PDBe, not RCSB for now, at least)
-- fetches http://rna.bgsu.edu/rna3dhub/loops/download/xxxx
-- hairpinLoops, internalLoops, junctions
-- allows for such constructs as:
select within(rna3d,"hairpinLoops")
select within(rna3d,"hairpinLoops where index=5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops.5")
print x
{
_atoms : ({3023:3062 3639:3706})
_isres : true
_path : "internalLoops"
index : 5
units : "1S72|1|0|C|153,1S72|1|0|C|154,1S72|1|0|G|182,1S72|1|0|A|183,1S72|1|0|G|184"
}
y = x._atoms
select y

 2014-09-13 17:14:04 Tree
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