Jmol Code

new feature: load *xxxx/rna3d
-- preliminary only (assumes _atom_site.label_seq_id same as _atom_site.auth_seq_id
and mmCIF only -- thus PDBe, not RCSB for now, at least)
-- fetches http://rna.bgsu.edu/rna3dhub/loops/download/xxxx
-- hairpinLoops, internalLoops, junctions
-- allows for such constructs as:
select within(rna3d,"hairpinLoops")
select within(rna3d,"hairpinLoops where index=5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops.5")
print x
{
_atoms : ({3023:3062 3639:3706})
_isres : true
_path : "internalLoops"
index : 5
units : "1S72|1|0|C|153,1S72|1|0|C|154,1S72|1|0|G|182,1S72|1|0|A|183,1S72|1|0|G|184"
}
y = x._atoms
select y

Jmol.___JmolVersion="14.3.7_2014.09.12"

bug fix: Draw broken in JSmol/HTML5 in 14.3.7_2014.09.07

faster ArrayList loading

Jmol.___JmolVersion="14.3.7_2014.09.11"

bug fix: Unit cell display and other characteristics offset or wrong when
crystallographic coordinates include an intrinsic offset from
Cartesian coordinates, as in the case of ENT/mmCIF 1hbb and 2hhb.

bug fix: PDB reader not reading SCALEn records; required in certain cases for load =xxxx {1 1 1}

Jmol.___JmolVersion="14.3.7_2014.09.11"

bug fix: Unit cell display and other characteristics offset or wrong when
crystallographic coordinates include an intrinsic offset from
Cartesian coordinates, as in the case of ENT/mmCIF 1hhb and 2hbb.

bug fix: PDB reader not reading SCALEn records; required in certain cases for load =xxxx {1 1 1}

Jmol.___JmolVersion="14.3.7_2014.09.10"

bug fix: Pending measurements lost when dragging to reposition molecule
bug fix: EM files not allowing unit cell creation for PDB or mmCIF files

Jmol.___JmolVersion="14.3.7_2014.09.10"

bug fix: Pending measurements lost when dragging to reposition molecule
bug fix: EM files not allowing unit cell creation for PDB or mmCIF files

Jmol.___JmolVersion="14.3.7_2014.09.08"

bug fix: binary document reader can skip bytes if an http connection
fails to deliver the full set of requested bytes in one operation
(nonstandard MRC files and PyMOL files)