Jmol Code

Jmol.___JmolVersion="14.3.7_2014.09.16"

bug fix: chainCaseSensitive ignored for select :a
bug fix: JmolData not reporting out properly

Jmol.___JmolVersion="14.3.7_2014.09.15b"

bug fix: 14.3.7_2014.09.14 breaks nucleic acid rendering

Jmol.___JmolVersion="14.3.7_2014.09.15"

bug fix: CARTOON OFF does not remove visibility flag for alpha carbons

Jmol.___JmolVersion="14.3.7_2014.09.13"

bug fix: JSmol/HTML5 fails to show rockets
bug fix: setting structures after displaying rockets does not reset rockets correctly

bug fix: load *xxxx/val validation loading not working (14.3.7_2014.09.07)

new feature: load =xxxx/rna3d
-- mmCIF only
-- fetches http://rna.bgsu.edu/rna3dhub/loops/download/xxxx
-- hairpinLoops, internalLoops, junctions
-- allows for such constructs as:
select within(rna3d,"hairpinLoops")
select within(rna3d,"hairpinLoops where index=5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops.5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops")[5]
print x
{
_atoms : ({3023:3062 3639:3706})
_isres : true
_path : "internalLoops"
index : 5
units : "1S72|1|0|C|153,1S72|1|0|C|154,1S72|1|0|G|182,1S72|1|0|A|183,1S72|1|0|G|184"
}
y = x._atoms
select y

new feature: load =xxxx/val
new feature: load =xxxx/dom
-- extends PDBe validation/domain annotation to RCSB calls

new feature: load *xxxx/dssr
new feature: load *xxxx/rna3d
-- DSSR analysis extended to PDBe calls
-- RNA3D analysis extended to RCSB calls

Jmol.___JmolVersion="14.3.7_2014.09.13"

bug fix: load *xxxx/val validation loading not working (14.3.7_2014.09.07)

new feature: load =xxxx/rna3d
-- mmCIF only
-- fetches http://rna.bgsu.edu/rna3dhub/loops/download/xxxx
-- hairpinLoops, internalLoops, junctions
-- allows for such constructs as:
select within(rna3d,"hairpinLoops")
select within(rna3d,"hairpinLoops where index=5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops.5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops")[5]
print x
{
_atoms : ({3023:3062 3639:3706})
_isres : true
_path : "internalLoops"
index : 5
units : "1S72|1|0|C|153,1S72|1|0|C|154,1S72|1|0|G|182,1S72|1|0|A|183,1S72|1|0|G|184"
}
y = x._atoms
select y

new feature: load =xxxx/val
new feature: load =xxxx/dom
-- extends PDBe validation/domain annotation to RCSB calls

new feature: load *xxxx/dssr
new feature: load *xxxx/rna3d
-- DSSR analysis extended to PDBe calls
-- RNA3D analysis extended to RCSB calls

Jmol.___JmolVersion="14.3.7_2014.09.13"

bug fix: load *xxxx/val validation loading not working (14.3.7_2014.09.07)

new feature: load *xxxx/rna3d
new feature: load =xxxx/rna3d
-- mmCIF only
-- fetches http://rna.bgsu.edu/rna3dhub/loops/download/xxxx
-- hairpinLoops, internalLoops, junctions
-- allows for such constructs as:
select within(rna3d,"hairpinLoops")
select within(rna3d,"hairpinLoops where index=5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops.5")
print x
{
_atoms : ({3023:3062 3639:3706})
_isres : true
_path : "internalLoops"
index : 5
units : "1S72|1|0|C|153,1S72|1|0|C|154,1S72|1|0|G|182,1S72|1|0|A|183,1S72|1|0|G|184"
}
y = x._atoms
select y

new feature: load =xxxx/val
new feature: load =xxxx/dom
-- extends PDBe validation/domain annotation to RCSB

Jmol.___JmolVersion="14.3.7_2014.09.13"

bug fix: load *xxxx/val validation loading not working (14.3.7_2014.09.07)

new feature: load *xxxx/rna3d
-- preliminary only (assumes _atom_site.label_seq_id same as _atom_site.auth_seq_id
and mmCIF only -- thus PDBe, not RCSB for now, at least)
-- fetches http://rna.bgsu.edu/rna3dhub/loops/download/xxxx
-- hairpinLoops, internalLoops, junctions
-- allows for such constructs as:
select within(rna3d,"hairpinLoops")
select within(rna3d,"hairpinLoops where index=5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops.5")
print x
{
_atoms : ({3023:3062 3639:3706})
_isres : true
_path : "internalLoops"
index : 5
units : "1S72|1|0|C|153,1S72|1|0|C|154,1S72|1|0|G|182,1S72|1|0|A|183,1S72|1|0|G|184"
}
y = x._atoms
select y

new feature: load *xxxx/rna3d
-- preliminary only (assumes _atom_site.label_seq_id same as _atom_site.auth_seq_id
and mmCIF only -- thus PDBe, not RCSB for now, at least)
-- fetches http://rna.bgsu.edu/rna3dhub/loops/download/xxxx
-- hairpinLoops, internalLoops, junctions
-- allows for such constructs as:
select within(rna3d,"hairpinLoops")
select within(rna3d,"hairpinLoops where index=5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops.5")
print x
{
_atoms : ({3023:3062 3639:3706})
_isres : true
_path : "internalLoops"
index : 5
units : "1S72|1|0|C|153,1S72|1|0|C|154,1S72|1|0|G|182,1S72|1|0|A|183,1S72|1|0|G|184"
}
y = x._atoms
select y

Jmol.___JmolVersion="14.3.7_2014.09.12"

bug fix: Draw broken in JSmol/HTML5 in 14.3.7_2014.09.07