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new feature: load *xxxx/rna3d

-- preliminary only (assumes _atom_site.label_seq_id same as _atom_site.auth_seq_id
and mmCIF only -- thus PDBe, not RCSB for now, at least)
-- fetches http://rna.bgsu.edu/rna3dhub/loops/download/xxxx
-- hairpinLoops, internalLoops, junctions
-- allows for such constructs as:
select within(rna3d,"hairpinLoops")
select within(rna3d,"hairpinLoops where index=5")
x = getproperty("auxiliaryInfo.models[1].rna3d.internalLoops.5")
print x
{
_atoms : ({3023:3062 3639:3706})
_isres : true
_path : "internalLoops"
index : 5
units : "1S72|1|0|C|153,1S72|1|0|C|154,1S72|1|0|G|182,1S72|1|0|A|183,1S72|1|0|G|184"
}
y = x._atoms
select y

hansonr 2014-09-13

changed /trunk/Jmol/src/org/jmol/adapter/readers/cif/MMCifReader.java
changed /trunk/Jmol/src/org/jmol/adapter/readers/cif/MMCifValidationParser.java
changed /trunk/Jmol/src/org/jmol/adapter/readers/pdb/PdbReader.java
changed /trunk/Jmol/src/org/jmol/adapter/smarter/AtomSetCollection.java
changed /trunk/Jmol/src/org/jmol/adapter/smarter/AtomSetCollectionReader.java
changed /trunk/Jmol/src/org/jmol/adapter/smarter/SmarterJmolAdapter.java
changed /trunk/Jmol/src/org/jmol/api/JmolAnnotationParser.java
changed /trunk/Jmol/src/org/jmol/dssx/AnnotationParser.java
changed /trunk/Jmol/src/org/jmol/modelset/ModelSet.java
changed /trunk/Jmol/src/org/jmol/script/ScriptEval.java
changed /trunk/Jmol/src/org/jmol/script/ScriptExpr.java
changed /trunk/Jmol/src/org/jmol/script/ScriptTokenParser.java
changed /trunk/Jmol/src/org/jmol/script/T.java
changed /trunk/Jmol/src/org/jmol/scriptext/MathExt.java
changed /trunk/Jmol/src/org/jmol/viewer/JC.java
changed /trunk/Jmol/src/org/jmol/viewer/Jmol.properties
changed /trunk/Jmol/src/org/jmol/viewer/Viewer.java