WO2000073440A1 - Pollinosis-associated gene 787 - Google Patents
Pollinosis-associated gene 787 Download PDFInfo
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- WO2000073440A1 WO2000073440A1 PCT/JP2000/003192 JP0003192W WO0073440A1 WO 2000073440 A1 WO2000073440 A1 WO 2000073440A1 JP 0003192 W JP0003192 W JP 0003192W WO 0073440 A1 WO0073440 A1 WO 0073440A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/415—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from plants
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K35/00—Medicinal preparations containing materials or reaction products thereof with undetermined constitution
- A61K35/12—Materials from mammals; Compositions comprising non-specified tissues or cells; Compositions comprising non-embryonic stem cells; Genetically modified cells
- A61K2035/122—Materials from mammals; Compositions comprising non-specified tissues or cells; Compositions comprising non-embryonic stem cells; Genetically modified cells for inducing tolerance or supression of immune responses
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
Definitions
- the present invention relates to a gene associated with an antigen stimulatory response, a method for testing an allergic disease using the expression of the gene as an index, and a method for screening a candidate therapeutic compound for suppressing a T cell antigen stimulatory response.
- Allergic diseases including hay fever, are considered multifactorial diseases. These diseases are caused by the interaction of the expression of many different genes, and the expression of these individual genes is affected by multiple environmental factors. Therefore, it is very difficult to elucidate the specific genes that cause specific diseases.
- the differential display (DD) method is useful as such a method.
- the differential display method was first developed in 1992 by Liang and Pardee (Science, 1992, 257: 967-971). By using this method, dozens or more of samples can be screened at a time, and It is possible to detect a gene whose expression has changed. Using such a method to examine genes with mutations or genes whose expression changes with time or environment is expected to provide important information for elucidating pathogenic genes. These genes include those whose expression is affected by environmental factors.
- Allergic diseases such as hay fever are one of the diseases seen by many people in recent years.
- the pathogenesis of hay fever may be related to several genes whose expression is affected by pollen, one of the environmental factors. Under such circumstances, it has been desired to isolate genes associated with allergic diseases such as hay fever. Disclosure of the invention
- An object of the present invention is to provide a gene associated with an allergic disease. Further, the present invention provides a method for testing an allergic disease, using the expression of the gene as an index.
- the present inventors have proposed a method for treating a plurality of humans based on the already established “Fluorescent DD (Fluorescent DD) method” (T. I. to et al., 1994, FEBS Lett. 351: 231-236).
- Fluorescent DD Fluorescent DD
- the present inventors collected T cells from blood before and after pollen dispersal in a plurality of subjects including pollinosis patients and expressed them between subjects with different cedar pollen-specific IgE values and before and after pollen dispersal.
- the present inventors performed a comparative analysis of the expression level of the isolated 787J gene in lymphocytes isolated from subjects before and after pollen scattering, and found that the gene showed a significantly lower value after cedar pollen scattering. Therefore, the present inventors used the expression level of the gene as an indicator to test for allergic diseases and to suppress antigen-stimulated response of T cells. It has been found that screening of drug candidate compounds is possible.
- the present invention relates to a gene showing a low value after pollen scattering, a method for testing allergic disease using the expression of the gene as an index, and a method for screening a candidate therapeutic compound for suppressing T cell antigen stimulation response. More specifically,
- nucleic acid molecule comprising the base sequence of SEQ ID NO: 20,
- nucleic acid molecule comprising the protein coding region of the nucleotide sequence of SEQ ID NO: 20, [3] a nucleic acid molecule specifically hybridized to the nucleic acid molecule of [1] or [2], and a chain length of at least 15 nucleotides DNA having
- T cells are prepared from peripheral blood of the subject
- step (f) selecting a compound that suppresses the decrease in the amount of RNA measured in step (e) as compared to a control (in the case where the test compound is not administered);
- step (f) selecting a compound that suppresses a decrease in the amount of DNA amplified in step (e) as compared to a control (in the case where no test compound is administered); [12] A method for screening a candidate therapeutic compound that suppresses the antigen-stimulated response of T cells,
- step (h) selecting a compound that suppresses the decrease in the amount of RNA measured in step (g) compared to a control (in the case where the test compound is not administered),
- step (h) selecting a compound that suppresses a decrease in the amount of DNA amplified in step (g) as compared to a control (in the case where the test compound is not administered);
- step (g) selecting a compound that suppresses the decrease in the amount of RNA measured in step (: f) as compared to a control (in the case where no test compound is administered);
- step (g) selecting a compound that suppresses a decrease in the amount of DNA amplified in step (f) as compared to a control (in the case where the test compound is not administered);
- step (e) selecting a compound that suppresses the decrease in the amount of RNA measured in step (d) compared to a control (in the case where the test compound is not administered),
- step (e) selecting a compound that suppresses a decrease in the amount of DNA amplified in step (d) compared to a control (in the case where no test compound is administered),
- lymphocytes are prepared from peripheral blood
- allergic disease is a general term for diseases associated with allergic reactions. More specifically, it can be defined as identifying the allergen, demonstrating a deep link between exposure to the allergen and the development of the lesion, and demonstrating an immunological mechanism for the lesion.
- the immunological mechanism is the allele Means that T cells show an immune response upon the stimulation of the gene.
- Typical allergic diseases can include bronchial asthma, allergic rhinitis, atopic dermatitis, hay fever, or insect allergy.
- Allergic predisposition is a genetic factor transmitted from parents to children with allergic diseases. Allergic diseases that occur familially are also called atopic diseases, and the genetic factors that cause them are atopic predispositions.
- nucleic acid molecule in the present invention includes DNA and RNA.
- the present invention relates to a novel gene “787J” correlated with the response of lymphocytes to cedar pollen antigen.
- the nucleotide sequence of the “787” cDNA found by the present inventors is shown in SEQ ID NO: 20.
- the nucleotide sequence of the “787” cDNA isolated by the present inventors is a partial distribution sequence of the “787” cDNA, and those skilled in the art will recognize the sequence information of the “787” cDNA described in SEQ ID NO: 20. Isolation of full-length cDNA for “787” based on the information can be usually performed. That is, a method for screening a T cell cDNA library or the like by hybridization using a sequence derived from “787” as a probe, or a method for screening a T cell cDNA library for a T cell cDNA library or the like using a sequence derived from “787” as a primer.
- nucleic acid molecule comprising the nucleotide sequence of SEQ ID NO: 20” in the present invention includes “78” which can be isolated based on the sequence information of “787” cDNA described in SEQ ID NO: 20 as described above. 7 "full-length cDNA.
- “787” indicates that lymphocytes in subjects were more consistent after pollen antigen exposure than before exposure. The expression was statistically significantly lower. Therefore, using the expression of the “787” gene (including transcription into mRNA and translation into protein) as an index, testing for allergic diseases and screening for candidate therapeutic compounds that suppress T cell antigen stimulation response It is considered possible. Decreased expression of “787” indicates the response of T cells to stimulation of antigens such as pollen.In patients with a history of allergic disease, expression of “787” is used as an index to determine the response of the patient to specific antigen exposure. Monitoring the transition is helpful in understanding the state of the disease and examining response to treatment.
- cedar pollinosis is particularly preferred.
- Detection of the expression of the "787" gene in the test for an allergic disease can be performed by using an hybridization technique using a nucleic acid that hybridizes to the "787" gene as a probe, or by hybridizing to the gene of the present invention. It can be performed using gene amplification technology using DNA as a primer.
- a nucleic acid molecule that specifically hybridizes to the “787” gene and has a chain length of at least 15 nucleotides is used.
- the term “specifically hybridizes” as used herein means that under normal hybridization conditions, preferably under stringent hybridization conditions, DNA and / or Z or RNA encoding other genes are cross-hybridized. Indicates that it does not occur significantly.
- the probe and the transfer membrane were hybridized at 68 in Express Hydidi zat ion on Solut ion (manufactured by CL0NTECH), and finally, 0.1 X SS 0.05% SDS solution was used. Stringent conditions can be achieved by washing at ° C.
- the probe DNA used for hybridization is usually labeled.
- Labels include, for example, nick translation labeling using DNA polymerase I, end labeling using polynucleotide kinase, Fill-in labeling with Reno fragment (Berger SL, Ki-band el AR. (1987) Guide to Molecular Cloning Techniques, Method in Enzymology, Academic Press; Hames BD, Higgins SJ (1985) Genes Probes: A Practical Approach. IRL . Press; Sambrook J, Fr i tsch EF, Maniat is T.
- the RT-KR method can be used as a method using gene amplification technology.
- the expression of the “787” gene can be more accurately quantified by using the PCR amplification monitor method as shown in Example 8 in the process of gene amplification.
- probes that are labeled with different fluorescent dyes that cancel each other's fluorescence at both ends are used to hybridize to the detection target (DNA or reverse transcript of RNA).
- the detection target DNA or reverse transcript of RNA.
- the two fluorescent dyes are separated and the fluorescence is detected. This fluorescence is detected in real time.
- the number of copies of the target in the target sample is determined based on the number of linear cycles of PCR amplification by simultaneously measuring a standard sample with a clear copy number for the target (Holland, PM et al., 1991, Pro Natl. Acad. Sci.
- the test for an allergic disease of the present invention may be performed by detecting the protein encoded by “787”.
- a Western blotting method using an antibody that binds to a protein encoded by “787”, an immunoprecipitation method, an ELISA method, and the like can be used.
- Antibodies to the protein encoded by the "787" of the present invention can be obtained as polyclonal antibodies or monoclonal antibodies using techniques well known to those skilled in the art (Milstein in C, et al., 1983, Nature 305 (5934): 537-40).
- the protein or its partial peptide used as an antigen is prepared by incorporating the “787” gene or a part thereof into an expression vector, introducing this into an appropriate host cell, and preparing a transformant. It can be obtained by culturing the transformant to express the recombinant protein, and purifying the expressed recombinant protein from the culture or the culture supernatant.
- a transformant obtained by culturing the transformant to express the recombinant protein, and purifying the expressed recombinant protein from the culture or the culture supernatant.
- an allergen such as cedar pollen antigen.
- the measurement of the expression level of the gene of the present invention, together with the pollen-specific antibody titer, symptoms, etc. can be used for testing for allergic diseases.
- the expression of the “787” gene expressed in T cells is reduced after pollen antigen exposure.
- the “787” gene is a gene whose expression level decreases as a response of the living body to cedar pollen antigen stimulation, and screening of a therapeutic agent for hay fever can be performed by monitoring the expression of the “787” gene.
- the expression level of the “787” gene is reduced by pollen antigen exposure in both healthy and hay fever patients. Presence or absence of hay fever symptoms is presumed to be due to the difference since the response of the "787J gene" to antigen stimulation. However, even in such cases, decreased expression of the "787” gene corresponds to increased T cell responsiveness Therefore, by monitoring the expression of the “7 87” gene, Can do it.
- the method of the present invention for screening a candidate therapeutic compound for suppressing a T cell antigen-stimulated response can be performed in vivo or in vitro.
- in vivo screening for example, after administering a candidate drug and stimulating with a pollen antigen to a model animal such as a mouse, T cells are separated from peripheral blood and the transcript of “787” is measured. I do.
- lymphocytes are separated from peripheral blood, and the lymphocytes are stimulated with cedar pollen antigen or the like with in vitro. T cells are separated from the lymphocytes after the stimulation, and the transcript of the “787” gene is measured.
- a compound that suppresses a decrease in the transcription level of the “787” gene compared to a control (when no candidate drug is administered) is selected.
- the stimulation with the pollen antigen is performed for the purpose of eliciting an antigen-specific allergic reaction in T cells and determining the therapeutic effect of the candidate compound on it.
- the term “suppressing the decrease in the transcription amount of the“ 787 ”gene” means that a higher level of transcription amount is maintained by contact with a candidate compound as compared to antigen-stimulated T cells.
- the compound is a compound to be selected in the screening method of the present invention.
- peripheral blood lymphocytes are collected from a human mouse or the like, and the peripheral blood lymphocytes are stimulated with in vitro with a cedar pollen antigen or the like.
- Candidate compounds are added during in vitro stimulation.
- the T cells are then separated from the stimulated peripheral blood lymphocytes and the transcript of “787” is measured.
- a compound that suppresses a decrease in the transcription amount of the “787” gene compared to a control (when the candidate drug is not contacted) is selected.
- the screening of candidate therapeutic compounds that suppress the antigen-stimulated response of T cells of the present invention can also be performed using established T cells.
- established T cells such as Molt4 cells and Jurka t cells are stimulated in vitro with a lymphocyte stimulator. Lymphocyte sting Examples of the intense substance include calcium ionophore (A23187), PMA, and phytohemagglutinin (PHA).
- Add candidate drug during invitro stimulation Thereafter, the transcription amount of the “787” gene in the established T cells is measured. As a result of this measurement, a compound that suppresses a decrease in the transcription amount of the “787” gene compared to a control (when the candidate drug is not contacted) is selected.
- Detection of the expression of the "787" gene in the screening of a therapeutic drug candidate compound that suppresses the T cell antigen-stimulatory response according to the present invention can be performed by detecting the nucleic acid hybridizing to the "787" gene in the same manner as in the test for allergic disease of the present invention.
- the hybridization can be carried out using a hybridization technique using DNA as a probe, or a gene amplification technique using DNA that hybridizes to the gene of the present invention as a primer.
- a method using the hybridization technology for example, a Northern hybridization method, a dot blot method, a method using a DNA microarray, or the like can be used.
- a method utilizing the gene amplification technique an RT-PCR method can be used.
- the expression of the “787” gene can be more accurately quantified by using a PCR amplification monitoring method as shown in Example 8 in the gene amplification process.
- test compounds used in these screenings include compound preparations synthesized by existing chemical methods such as steroid derivatives, compound preparations synthesized by combinatorial chemistry, extracts of animal and plant tissues, or microbial cultures.
- a mixture containing a plurality of compounds such as a product, a sample purified from the mixture, and the like.
- the compound isolated by the method of the present invention for screening a candidate therapeutic compound for suppressing a T cell antigen-stimulated response is a candidate for a drug that suppresses an immune response.
- the compound isolated by the screening method of the present invention when used as a pharmaceutical, it can be used as a pharmaceutical preparation by a known pharmaceutical production method. For example, it is administered to a patient together with a pharmacologically acceptable carrier or vehicle (such as saline, vegetable oils, suspensions, surfactants, stabilizers, etc.). Dosage depends on the nature of the compound Performed percutaneously, intranasally, transbronchially, intramuscularly, intravenously, or orally. The dose varies depending on the patient's age, body weight, symptoms, administration method and the like, but those skilled in the art can appropriately select an appropriate dose. BRIEF DESCRIPTION OF THE FIGURES
- FIG. 1 is a diagram showing the antibody titers of cedar pollen-specific IgE antibodies in a total of 18 blood samples from 10 subjects who collected blood.
- the values of cedar pollen-specific IgE antibodies in each blood sample of Test Subjects A to (sample numbers 1 to 18) were expressed in AU / ml. The pair before pollen scattering is shown on the left (white column), and the one after scattering is shown on the right (black column). Subjects A and B collected only blood after pollen scattering.
- FIG. 2 is a diagram showing changes in the expression of “787” in the pre-scattering group and the post-scattering group when grouping was performed before and after the cedar pollen scattering time. Error bars represent standard deviation. BEST MODE FOR CARRYING OUT THE INVENTION
- Fig. 1 shows the measured cedar pollen-specific IgE values before and after pollen scattering in each subject. As shown, most of the 10 subjects had increased serum levels of cedar pollen-specific IgE after pollen exposure. The presence of atopic predisposition was determined by whether the value of the CAP RAST test for cedar pollen-specific IgE was greater than 2. That is, eight subjects A to G and I were considered to be atopic predisposition groups (hereinafter also referred to as “patients”), and two subjects H and were considered to be healthy subjects (hereinafter also referred to as “normal groups”). Of the eight subjects with an atopic predisposition, seven exhibited symptoms of allergic rhinitis after pollen dispersal.
- patients atopic predisposition groups
- normal groups two subjects H and were considered to be healthy subjects
- the procedure was as follows. First, the wall of the syringe was uniformly treated with 1 ml of heparin from Novo, etc., and blood was collected in a 10 ml syringe containing a final concentration of 50 unit / ml heparin. At this time, two 22G needles were prepared for one blood sample. The injection needle was removed and transferred to a 50 ml centrifuge tube (made of polypropylene). After centrifugation at 1500 rpm for 5 minutes at room temperature, 1.1 ml was collected from the surface as close as possible, and centrifuged at 15000 rpm for 5 minutes at 4 to collect 1 ml of the supernatant as plasma.
- the lymphocyte fraction obtained in Example 2 was centrifuged at 1200 i "pm for 4 and 5 minutes, and suspended in BSA / PBS at 10 8 per 100 / xl. The volume became about 201. This was transferred to an Eppendorf tube (1.5 ml), to which the CD3 microbead solution was added, and then left for 30 minutes at 4 to 10 ° C (not placed on ice at this time). The treatment was performed as follows using Yuichi (MACS) (manufactured by Miltenyi Biotech Inc.).
- the MS + / RS + column was mounted on a Mini MACS or Vario MACS separation unit (without needles). 500 1 of BSA / PBS was gently applied to the column, and the buffer was poured out. Next, cells labeled with CD3 microbeads were applied to the column. The column was washed three times with 500 ⁇ 1 (B cell fraction). The column was removed from the separation unit and placed on a tube collecting the eluate. 1 ml of BSA / PBS was applied to the column, and positive cells were rapidly flushed out using a plunger attached to the column. This was used as the T cell fraction.
- the obtained T cell fraction was centrifuged at 1200 rpm for 5 minutes at 4 ° C.
- the precipitate was washed twice with BSA / PBS. After the second washing, the cells were suspended in 1 ml, and a part thereof was diluted 2-fold with trypan blue to count the number of cells.
- the total cell number was about 4 ⁇ 10 6 .
- RNA from T cells For preparation of total RNA from T cells, use RNeasy Mini (manufactured by Qiagen). Performed according to the attached manual. All operations were performed at room temperature, wearing gloves. Four volumes of ethanol were added to Posh Buffer RPE. Lysis buffer RLT was supplemented with 10 1 / ml 2-mercaptoethanol. The cell suspension was centrifuged at 1000-1200 i "pm for 5 minutes, and the supernatant was removed by aspirating. A 350 // 1 lysis buffer RLT (containing 2-mercaptoethanol) solution was added to the precipitate. At this stage, the lysate of the cells in the RLT buffer could be stored at -70 ° C. If the lysate of the cells had been stored frozen, 10-15 at 37 ° C.
- lysate was homogenized with a syringe equipped with a 20 G force teran needle, and then purified with Kia Shredda ( (That is, the lysate of 3501 cells was usually applied to a Kyaschlets d'Aunit using a Pittman.
- wash Buffer RPE containing ethanol
- wash Buffer RPE 500 1 was applied to the column and centrifuged at maximum speed for 2 minutes
- the column was placed in a new 1.5 ml tube, DEPC-treated water 301 was applied, the lid was put on the tube, and the tube was allowed to stand for 10 minutes, followed by centrifugation at 11500 ⁇ m for 10 minutes to obtain total RNA. Measure and if the volume is low, The sample was placed in a new 1.5 ml tube, water 301 treated with DEPC was applied, the lid was put on the tube, the tube was set for 10 minutes, and centrifuged at 11,500 rpm for 10 minutes.
- DNase treatment was performed to remove DNA from total RNA prepared from T cells. Reaction 2 Unit DNase (Nitsubon Gene) and 50 units RNase inhibitor Yuichi
- DD Fluorescence differential display
- Total RNA prepared from T cells was reverse transcribed to obtain cDNA.
- cDNA was prepared using 0.2 g of total RNA for each of the three anchor primers.
- cDNA was prepared using 0.4 zg of RNA for each of the three anchor primers. All cDNAs were diluted to a final concentration equivalent to 0.4 ng / l RNA and used for experiments.
- a DD-PCR reaction was performed using cDNA equivalent to 1 ng RNA per reaction. Table 1 shows the composition of the reaction solution.
- the PCR reaction conditions were as follows: 1 cycle of 95 ° C for 3 minutes, 40 ° C for 5 minutes, 72 ° C for 5 minutes, followed by 30 cycles of 94 ° C for 15 seconds, 40 ° C for 2 minutes, and 72 ° C for 1 minute. Thereafter, the temperature was kept at 72 ° C for 5 minutes, and then continuously 4T :.
- the primer pairs used were primers AG1 to 110 and AG111 to GT15A (SEQ ID NO: 2), GT15C (SEQ ID NO: 3), and GT15G (SEQ ID NO: 4), which are anchor primers, respectively.
- a total of 287 reactions were performed by combining 199 and AG 200-287.
- an oligomer composed of 10 nucleotides having a GC content of 50% was designed, synthesized, and used.
- a 6% denaturing polyacrylamide gel was prepared, 2.5 1 samples were applied, and electrophoresed at 40 W for 210 minutes. Thereafter, the gel plate was scanned using Hitachi Fluorescence Image Analyzer -FMBI0 II, and electrophoretic images were obtained by fluorescence detection.
- Two DD analyzes were performed using a number of arbitrary primers. Bands that differed before and after pollen dispersal or between the patient and healthy groups were selected and reproducible bands were excised from the gel in two experiments.
- the “787” band is GT15G (SEQ ID NO: 4) as an anchor primer, DD analysis using AG274 (TGACCTAGCT / SEQ ID NO: 5) as an imaginary animal revealed that the expression of “787” was stronger in 4 out of 8 subjects before dispersal than after dispersal.
- a gel containing the band of “787” was cut out, stored in a TE solution, and heated at 60 ° C. for 10 minutes to elute DNA from the gel.
- PCR was performed under the same conditions as DD-PCR, and a DNA fragment of about 290 bp was amplified.
- GT15G was used as the anchor primer, and AG274 was used as the optional primer.
- the amplified DNA fragment was cloned into a plasmid vector pCR2.l (Invitrogen) to obtain a plasmid p787-5 having a DNA fragment of about 290 bp.
- the nucleotide sequence of the DNA fragment was determined according to a conventional method.
- the expression amount of "787" was quantified by the TaqMan method using ABI-PRISM7700. This method is a system for real-time quantitative detection of PCR-amplified DNA strands using fluorescent dyes.
- blood samples before and after cedar pollen scattering were newly collected from 22 volunteers in the spring of 1998, T cells were prepared, and total RNA was extracted.
- the expression level of the target gene was quantified using a total of 44 total RNA samples.
- primers 787-5 ′ AGCTTCTGGACAGCCCAGTC / SEQ ID NO: 6
- 787-3 ′ GGAGTTAGCCAGGCAGCAAAZ sequence ID: 7
- TaqMan probe 787-13SEQ TGGTGATGGCTGGAGGGAGTGATTGZ Column number: 8
- the TaqMan probe 787-13SEQ was used by fluorescently labeling the 5 end with FAM (6-carboxyfluorescein) and the 3 end with TAMRA (6-carboxy-tetramethytri rhodamine).
- FAM 6-carboxyfluorescein
- TAMRA 6-carboxy-tetramethytri rhodamine
- type II reverse transcribed cDNA from 44 total RNAs using poly T (12 to 18 mer) as a primer was used.
- a serial dilution of the plasmid p787-5 obtained in Example 7 was used as a type II reaction.
- Table 3 shows the composition of the reaction solution for monitoring PCR amplification.
- Reaction composition of ABI-PRISM 7700 (reaction volume per 1 liter) Sterile distilled water 25.66 (L)
- Table 4 shows the number (copy number) of “787” in each sample corrected for the copy number of / 3-actin. For the correction, the average copy of -actin in all samples was determined, and the copy number of "787" in each sample was divided by the relative value of / 3-actin in each sample when it was set to 1.
- a primer was designed in the determined "787" sequence, and further upstream sequencing was attempted using a Marathon cDNA Amplification Kit (CLONTECH). Using cDNA from Human Leukemia K-562 cell line (CLONTECH), a cDNA for Marathon was prepared and type II. PCR was carried out using the primer 787_M1U (TTCACGCGGT CTCTTGTAMGTTZ SEQ ID NO: 11) designed in a known sequence region and the adapter primer attached to the kit.
- the PCR reaction conditions were as follows: after heating at 94 ° C for 30 seconds, 5 cycles of ⁇ 945 seconds, 704 minutes '', 5 cycles of ⁇ 94 ° C for 5 seconds, 68 minutes for 4 minutes, '' ⁇ 94 ° C for 5 seconds, 66 4 minutes "for 25 cycles. As a result, an amplification product of about 1.3 kb was obtained. When this DNA sequence was determined, a 1305 bp sequence including the previously determined “787” sequence was obtained. This sequence is shown in SEQ ID NO: 1.
- the attached AP2 Primer (ACTCACTATAGGGCTCGAGCGGCZ sequence number: 14) and the 787-specific 787-2R Primer (GCTCCCTAGTCTCTCTCACCTCCT sequence number: 15) was used to perform a PCR reaction.
- the reaction conditions for the PCR were as follows: primary: one cycle of ⁇ 94 ° C for 3 minutes '', followed by ⁇ 94 ° C for 30 seconds, 60 ° C for 30 seconds, 72 ° C for 3 minutes '' after 35 cycles of ⁇ 72 ° C One cycle of “C5 min” was followed by continuous 4 ° C.
- the amplified DNA fragment was excised from the gel, cloned with plasmid vector PCR2.1 (Invitrogen), and a plasmid containing a DNA fragment of about 600 bp was cloned. Obtained.
- plasmid vector PCR2.1 Invitrogen
- the nucleotide sequence of the DNA fragment was determined according to a conventional method. As a result, about 200 bp of the upstream sequence could be obtained. The sequence is shown in SEQ ID NO: 16.
- 5 'RACE analysis was performed using Marathon-Ready cDNA (CLONTECH) Bone Marrow as type II.
- the attached API Primer CCATCCTAATACGACTC ACTATAGGGCZ SEQ ID NO: 12
- 787-yRl Primer AGCCCTCT A PCR reaction was performed using GAATCTCCACTCTCTAZ SEQ ID NO: 17.
- the attached AP2 Primer ACTCACTATAGGGCTCGAGCGGC / S2 column number: 14
- the 787-specific 787-yR2 Primer TCCCTTACCAGATACTACCTCG TG / SEQ ID NO: A PCR reaction was performed using (18).
- the 787-yRl Primer and 787-yR2 Primer were designed based on the nucleotide sequence obtained from "Recovery of band excised by 5 'RACE analysis and sequencing 1".
- the reaction conditions for the PCR were as follows: primary: one cycle of ⁇ 94 ° C for 3 minutes '' followed by ⁇ 94 ° C for 30 seconds, 6 CTC for 30 seconds, 72 ° C for 1 minute '' after 35 cycles of ⁇ 72 ° C Min) for one cycle and then continuously at 4 ° C.
- the second is one cycle of ⁇ 94 ° C for 3 minutes '' followed by one cycle of ⁇ 94 ° C for 30 seconds, 60 ° C for 30 seconds and 72 ° C for one minute '' followed by one cycle of ⁇ 72 ° C for 5 minutes '' Thereafter, the temperature was continuously raised to 4 ° C.
- TaKaRa Ex Taq (TaKaRa) was used as a Taq enzyme, and reaction solutions were prepared from the attached reaction reagents according to the attached manual.
- a 1.2% agarose gel was prepared, 5 ⁇ 1 sample was applied, and electrophoresis was performed at 100 V constant voltage for 30 minutes. Thereafter, electrophoretic images were obtained by UV transillumination.
- the amplified DNA fragment was excised from the gel, cloned with the plasmid vector PCR2.1 (Invitrogen), and the plasmid containing the approximately 1.2 kbp DNA fragment was cloned. Obtained.
- the nucleotide sequence of the DNA fragment was determined according to a conventional method. As a result, a further upstream sequence of about 1 kb was obtained. The sequence is shown in SEQ ID NO: 19. Based on these findings, the nucleotide sequence of “787” was finally 2565 bp. The nucleotide sequence of "787" is shown in SEQ ID NO: 20.
- the present invention is used as an indicator of the response of T cells to antigen stimulation such as cedar pollen.
- New genes have been provided. Using the expression of the gene of the present invention as an index, it has become possible to conduct a test for the presence or absence of a response of T cells to pollen antigen, or to screen a candidate therapeutic compound for suppressing the response of T cells to antigen stimulation.
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Abstract
Description
明細 花粉症関連遺伝子、 7 8 7 技術分野 Hay fever-related gene, 7 8 7 Technical field
本発明は、 抗原刺激応答に関連する遺伝子、 並びに該遺伝子の発現を指標とし たアレルギー疾患の検査方法および T細胞の抗原刺激応答を抑制する治療薬候補 化合物のスクリーニング方法に関する。 背景技術 The present invention relates to a gene associated with an antigen stimulatory response, a method for testing an allergic disease using the expression of the gene as an index, and a method for screening a candidate therapeutic compound for suppressing a T cell antigen stimulatory response. Background art
花粉症を含むアレルギー疾患は多因子性の病気(multifactorial diseases)と 考えられている。 これらの病気は多くの異なる遺伝子の発現の相互作用によって 起こり、 これらの個々の遺伝子の発現は、複数の環境要因によって影響を受ける。 このため、 特定の病気を起こす特定の遺伝子を解明することは、 非常に困難であ る。 Allergic diseases, including hay fever, are considered multifactorial diseases. These diseases are caused by the interaction of the expression of many different genes, and the expression of these individual genes is affected by multiple environmental factors. Therefore, it is very difficult to elucidate the specific genes that cause specific diseases.
またァレルギ一疾患の発症には、 抗原刺激に対する応答として発現する遺伝子 の変異や欠陥、 あるいは過剰発現や発現量の減少が関わっていると考えられてい る。 病気に関して遺伝子発現が果たしている役割を解明するためには、 遺伝子が 発症にどのように関わり、 抗原や薬剤などの外的な刺激が遺伝子発現をどのよう に変化させるのかを理解する必要がある。 It is thought that the onset of allergic disease involves mutations or defects in genes expressed in response to antigenic stimulation, or overexpression or decreased expression levels. To understand the role of gene expression in disease, it is necessary to understand how genes are involved in pathogenesis and how external stimuli, such as antigens and drugs, alter gene expression.
近年の遺伝子発現の解析技術の発達により、 多くの臨床試料で、 遺伝子の発現 を解析 ·比較することが可能となった。 このような方法としては、 ディファレン シャルディスプレイ(DD)法が有用である。ディファレンシャルディスプレイ法は、 ライアンおよびパディ一(Liang and Pardee)によって 1992 年に最初に開発され た(Science, 1992, 257:967- 971)。 この方法を用いることによって、 1回に数十種 類以上のサンプルをスクリーニングすることができ、 それらのサンプル中で発現 が変化した遺伝子を検出することが可能である。 このような方法を用いて、 変異 が生じた遺伝子や、 時間や環境とともに発現が変わるような遺伝子を調べること によって、 病因遺伝子の解明のために重要な情報がもたらされることが期待され る。 これらの遺伝子には、 環境要因によって発現に影響を受けるような遺伝子も 含まれる。 Recent developments in gene expression analysis technology have made it possible to analyze and compare gene expression in many clinical samples. The differential display (DD) method is useful as such a method. The differential display method was first developed in 1992 by Liang and Pardee (Science, 1992, 257: 967-971). By using this method, dozens or more of samples can be screened at a time, and It is possible to detect a gene whose expression has changed. Using such a method to examine genes with mutations or genes whose expression changes with time or environment is expected to provide important information for elucidating pathogenic genes. These genes include those whose expression is affected by environmental factors.
花粉症等のアレルギー疾患は、 近年多くの人に見られる疾患の一つである。 花 粉症の病因には、 環境要因の一つである花粉によって発現が影響を受ける複数の 遺伝子が関わっていると考えられる。 このような事情から、 花粉症をはじめとす るアレルギー疾患に関連する遺伝子を単離することが望まれていた。 発明の開示 Allergic diseases such as hay fever are one of the diseases seen by many people in recent years. The pathogenesis of hay fever may be related to several genes whose expression is affected by pollen, one of the environmental factors. Under such circumstances, it has been desired to isolate genes associated with allergic diseases such as hay fever. Disclosure of the invention
本発明は、 アレルギー疾患に関連する遺伝子を提供することを課題とする。 さ らに、 本発明は該遺伝子の発現を指標とした、 アレルギー疾患の検査方法および An object of the present invention is to provide a gene associated with an allergic disease. Further, the present invention provides a method for testing an allergic disease, using the expression of the gene as an index.
T 細胞の抗原刺激応答を抑制する治療薬候補化合物のスクリーニング方法を提供 することを課題とする。 It is an object of the present invention to provide a method for screening a therapeutic drug candidate compound that suppresses T cell antigen-stimulated response.
本発明者らは、 既に確立された 「蛍光 DD (F l uorescent DD)法」 (T. I toら, 199 4, FEBS Le t t . 351 : 231-236) の手順に基づき、 複数のヒトの血液から調製した T細胞 RNAサンプルを解析できる DDシステムを新たに開発した。このシステムを 用いて、 本発明者らは花粉症患者を含む複数の被験者について、 花粉飛散の前後 の血液から T細胞を採取し、 スギ花粉特異的 IgE値の異なる被験者間や花粉飛散 前後で発現量が変化する遺伝子のスクリーニングを行い、 新規遺伝子 (「787」 遺 伝子) を単離した。 The present inventors have proposed a method for treating a plurality of humans based on the already established “Fluorescent DD (Fluorescent DD) method” (T. I. to et al., 1994, FEBS Lett. 351: 231-236). We have developed a new DD system that can analyze T cell RNA samples prepared from blood. Using this system, the present inventors collected T cells from blood before and after pollen dispersal in a plurality of subjects including pollinosis patients and expressed them between subjects with different cedar pollen-specific IgE values and before and after pollen dispersal. We screened for genes with varying amounts and isolated a novel gene (the “787” gene).
本発明者らは、 花粉飛散前後に被験者から分離したリンパ球で、 単離した 「78 7J遺伝子の発現量を比較解析した結果、該遺伝子がスギ花粉飛散後において有意 に低値を示すことを見出した。 このため、 本発明者らは、 該遺伝子の発現量を指 標として、 アレルギー疾患の検査、 および T細胞の抗原刺激応答を抑制する治療 薬候補化合物のスクリーニングを行うことが可能であることを見出した。 The present inventors performed a comparative analysis of the expression level of the isolated 787J gene in lymphocytes isolated from subjects before and after pollen scattering, and found that the gene showed a significantly lower value after cedar pollen scattering. Therefore, the present inventors used the expression level of the gene as an indicator to test for allergic diseases and to suppress antigen-stimulated response of T cells. It has been found that screening of drug candidate compounds is possible.
すなわち本発明は、 花粉飛散後に低値を示す遺伝子、 および該遺伝子の発現を 指標としたァレルギ一疾患の検査方法、 および T細胞の抗原刺激応答を抑制する 治療薬候補化合物のスクリーニング方法に関する。 より具体的には、 That is, the present invention relates to a gene showing a low value after pollen scattering, a method for testing allergic disease using the expression of the gene as an index, and a method for screening a candidate therapeutic compound for suppressing T cell antigen stimulation response. More specifically,
〔 1〕 配列番号: 20に記載の塩基配列を含む核酸分子、 [1] a nucleic acid molecule comprising the base sequence of SEQ ID NO: 20,
〔2〕配列番号: 20に記載の塩基配列のタンパク質コード領域を含む核酸分子、 〔3〕 〔1〕 または 〔2〕 に記載の核酸分子に特異的にハイブリダィズし、 少なく とも 15ヌクレオチドの鎖長を有する DNA、 [2] a nucleic acid molecule comprising the protein coding region of the nucleotide sequence of SEQ ID NO: 20, [3] a nucleic acid molecule specifically hybridized to the nucleic acid molecule of [1] or [2], and a chain length of at least 15 nucleotides DNA having
〔4〕 〔3〕 に記載の DNAを用いることを特徴とする、 〔1〕 に記載の核酸分子の 検出方法、 (4) The method for detecting a nucleic acid molecule according to (1), which comprises using the DNA according to (3).
〔5〕 アレルギー疾患の検査方法であって、 [5] a method for testing an allergic disease,
(a) 被験者から T細胞を調製する工程、 (a) preparing T cells from a subject,
(b) 該 T細胞から RNA試料を調製する工程、 (b) preparing an RNA sample from the T cells,
(c) 該 RNA試料に対して、 標識した 〔3〕 に記載の DNAをプローブとして、 ハイブリダイゼーシヨンを行う工程、 (c) a step of performing hybridization on the RNA sample using the labeled DNA according to (3) as a probe,
(d) 標識した 〔3〕 に記載の DNAにハイブリダィズする被験者由来の RNA量 を測定し、 対照 (健常者の場合) と比較する工程、 を含む方法、 (d) measuring the amount of RNA derived from a subject that hybridizes to the labeled DNA according to [3], and comparing it with a control (in the case of a healthy subject).
〔6〕 アレルギー疾患の検査方法であって、 [6] a method for testing an allergic disease,
(a) 被験者から T細胞を調製する工程、 (a) preparing T cells from a subject,
(b) 該 T細胞から RNA試料を調製する工程、 (b) preparing an RNA sample from the T cells,
(c) 該 RNA試料に対して逆転写反応を行い cDNAを合成する工程、 (c) performing a reverse transcription reaction on the RNA sample to synthesize cDNA;
(d) 該 cDNAを铸型に、 〔3〕 に記載の DNAをプライマーとして、 ポリメラ一 ゼ連鎖反応 (PCR) を行う工程、 (d) a step of performing a polymerase chain reaction (PCR) using the cDNA as a type III and the DNA according to [3] as a primer,
(e) ポリメラーゼ連鎖反応により増幅された DNA量を、 対照 (健常者の場合) と比較する工程、 を含む方法、 (e) comparing the amount of DNA amplified by the polymerase chain reaction with a control (in the case of a healthy subject).
〔7〕ポリメラ一ゼ連鎖反応を PCR増幅モニター法により行う、 〔6〕に記載の方 法、 [7] The method according to [6], wherein the polymerase chain reaction is performed by a PCR amplification monitor method. Law,
〔8〕 T細胞が被験者の末梢血から調製される、 〔5〕 から 〔7〕 のいずれかに記 載の方法、 (8) the method according to any of (5) to (7), wherein T cells are prepared from peripheral blood of the subject;
〔9〕 アレルギー疾患がスギ花粉症である、 〔5〕 から 〔8〕 のいずれかに記載の 方法、 (9) the method according to any one of (5) to (8), wherein the allergic disease is cedar pollinosis;
〔1 0〕 Τ 細胞の抗原刺激応答を抑制する治療薬候補化合物をスクリーニングす る方法であって、 [10] 方法 a method of screening for a candidate therapeutic compound that suppresses the antigen-stimulated response of cells,
( a ) モデル動物に被検化合物の投与および花粉抗原による刺激を行う工程 (a) Step of administering a test compound to a model animal and stimulating it with pollen antigen
(b) 該モデル動物から T細胞を調製する工程、 (b) preparing T cells from the model animal,
(c) 該 T細胞から RNA試料を調製する工程、 (c) preparing an RNA sample from the T cells,
(d) 該 RNA試料に対して、 標識した 〔3〕 に記載の DNAをプローブとして、 ハイブリダイゼーシヨンを行う工程、 (d) performing a hybridization on the RNA sample using the labeled DNA according to (3) as a probe,
(e) 標識した 〔3〕 に記載の DNAにハイブリダィズする該 T細胞由来の RNA 量を測定する工程、 (e) measuring the amount of RNA derived from the T cells that hybridizes to the labeled DNA according to (3),
( f ) 対照 (被検化合物非投与の場合) と比較して、 工程 (e) において測定 される RNA量の低下を抑制する化合物を選択する工程、 を含む方法、 (f) selecting a compound that suppresses the decrease in the amount of RNA measured in step (e) as compared to a control (in the case where the test compound is not administered);
〔1 1〕 T 細胞の抗原刺激応答を抑制する治療薬候補化合物をスクリーニングす る方法であって、 (11) A method for screening a candidate therapeutic compound that suppresses the antigen-stimulated response of T cells,
(a) モデル動物に被検化合物の投与および花粉抗原による刺激を行う工程、 (a) administering a test compound to a model animal and stimulating with a pollen antigen,
(b) 該モデル動物から T細胞を調製する工程、 (b) preparing T cells from the model animal,
(c) 該 T細胞から RNA試料を調製する工程、 (c) preparing an RNA sample from the T cells,
(d) 該 RNA試料に対して逆転写反応を行い cDNAを合成する工程、 (d) performing a reverse transcription reaction on the RNA sample to synthesize cDNA;
(e) 該 cDNAを铸型に、 〔3〕 に記載の DNAをプライマ一として、 ポリメラー ゼ連鎖反応 (PCR) を行う工程、 (e) a step of performing a polymerase chain reaction (PCR) using the cDNA as a type III and the DNA according to [3] as a primer,
( f ) 対照 (被検化合物非投与の場合) と比較して、 工程 (e) において増幅 される DNA量の低下を抑制する化合物を選択する工程、 を含む方法、 〔1 2〕 T 細胞の抗原刺激応答を抑制する治療薬候補化合物をスクリーニングす る方法であって、 (f) selecting a compound that suppresses a decrease in the amount of DNA amplified in step (e) as compared to a control (in the case where no test compound is administered); [12] A method for screening a candidate therapeutic compound that suppresses the antigen-stimulated response of T cells,
(a) 被検化合物をモデル動物に投与する工程、 (a) administering a test compound to a model animal,
(b) 該モデル動物からリンパ球を調製する工程、 (b) preparing lymphocytes from the model animal,
(c) 該リンパ球を花粉抗原で刺激する工程、 (c) stimulating the lymphocytes with a pollen antigen,
( d ) 該抗原刺激を受けたリンパ球から T細胞を分離する工程、 (d) separating T cells from the antigen-stimulated lymphocytes,
(e) 該 T細胞から RNA試料を調製する工程、 (e) preparing an RNA sample from the T cells,
( f ) 該 RNA試料に対して、 標識した 〔3〕 に記載の DNAをプローブとして、 ハイブリダィゼーションを行う工程、 (f) a step of performing hybridization on the RNA sample using the labeled DNA of (3) as a probe,
(g) 標識した 〔3〕 に記載の DNAにハイブリダィズする該 T細胞由来の RNA 量を測定する工程、 (g) a step of measuring the amount of RNA derived from the T cells that hybridizes to the labeled DNA according to (3),
(h) 対照 (被検化合物非投与の場合) と比較して、 工程 (g) において測定 される RNA量の低下を抑制する化合物を選択する工程、 を含む方法、 (h) selecting a compound that suppresses the decrease in the amount of RNA measured in step (g) compared to a control (in the case where the test compound is not administered),
〔1 3〕 T 細胞の抗原刺激応答を抑制する治療薬候補化合物をスクリーニングす る方法であって、 (13) A method for screening a candidate therapeutic compound that suppresses the antigen stimulation response of T cells,
(a) 被検化合物をモデル動物に投与する工程、 (a) administering a test compound to a model animal,
(b) 該モデル動物からリンパ球を調製する工程、 (b) preparing lymphocytes from the model animal,
(c) 該リンパ球を花粉抗原で刺激する工程、 (c) stimulating the lymphocytes with a pollen antigen,
(d) 該抗原刺激を受けたリンパ球から T細胞を分離する工程、 (d) separating T cells from the antigen-stimulated lymphocytes,
(e) 該 T細胞から RNA試料を調製する工程、 (e) preparing an RNA sample from the T cells,
( f ) 該 RNA試料に対して逆転写反応を行い cDNAを合成する工程、 (f) performing a reverse transcription reaction on the RNA sample to synthesize cDNA;
(g) 該 cDNAを铸型に、 〔3〕 に記載の DNAをプライマーとして、 ポリメラー ゼ連鎖反応 (PCR) を行う工程、 (g) performing a polymerase chain reaction (PCR) using the cDNA as a type I and the DNA according to [3] as a primer,
(h) 対照 (被検化合物非投与の場合) と比較して、 工程 (g) において増幅 される DNA量の低下を抑制する化合物を選択する工程、 を含む方法、 (h) selecting a compound that suppresses a decrease in the amount of DNA amplified in step (g) as compared to a control (in the case where the test compound is not administered);
〔14〕 T 細胞の抗原刺激応答を抑制する治療薬候補化合物をスクリーニングす る方法であって、 [14] Screen for candidate therapeutic compounds that suppress T cell antigen-stimulatory response Method
(a) モデル動物またはヒトカ らリンパ球を調製する工程、 (a) preparing lymphocytes from a model animal or human mosquito,
(b) 被検化合物の存在下、 該リンパ球を花粉抗原で刺激する工程、 (b) stimulating the lymphocytes with a pollen antigen in the presence of a test compound,
( c ) 該抗原刺激を受けたリンパ球から T細胞を分離する工程、 (c) separating T cells from the antigen-stimulated lymphocytes,
(d) 該 T細胞から RNA試料を調製する工程、 (d) preparing an RNA sample from the T cells,
(e) 該 RNA試料に対して、 標識した 〔3〕 に記載の DNAをプロ一' ハイブリダイゼーシヨンを行う工程、 (e) a step of subjecting the RNA sample to professional hybridization with the labeled DNA according to (3),
( f ) 標識した 〔3〕 に記載の DNAにハイブリダィズする該 T細胞由来の RNA 量を測定する工程、 (f) measuring the amount of RNA derived from the T cells that hybridizes to the labeled DNA according to (3),
(g) 対照 (被検化合物非投与の場合) と比較して、 工程 (:f) において測定 される RNA量の低下を抑制する化合物を選択する工程、 を含む方法、 (g) selecting a compound that suppresses the decrease in the amount of RNA measured in step (: f) as compared to a control (in the case where no test compound is administered);
〔15〕 T細胞の抗原刺激応答を抑制する治療薬候補化合物をスクリーニングす る方法であって、 (15) a method for screening a candidate therapeutic compound that suppresses the antigen stimulation response of T cells,
(a) モデル動物またはヒ卜からリンパ球を調製する工程、 (a) preparing lymphocytes from a model animal or human,
(b) 被検化合物の存在下、 該リンパ球を花粉抗原で刺激する工程、 (b) stimulating the lymphocytes with a pollen antigen in the presence of a test compound,
(c) 該抗原刺激を受けたリンパ球から T細胞を分離する工程、 (c) separating T cells from the antigen-stimulated lymphocytes,
(d) 該 T細胞から RNA試料を調製する工程、 (d) preparing an RNA sample from the T cells,
( e ) 該 RNA試料に対して逆転写反応を行い cDNAを合成する工程、 (e) performing a reverse transcription reaction on the RNA sample to synthesize cDNA;
( f ) 該 cDNAを铸型に、 〔3〕 に記載の DNAをプライマーとして、 ポリメラー ゼ連鎖反応 (PCR) を行う工程、 (f) performing a polymerase chain reaction (PCR) using the cDNA as a type I and the DNA according to [3] as a primer,
(g) 対照 (被検化合物非投与の場合) と比較して、 工程 (f) において増幅 される DNA量の低下を抑制する化合物を選択する工程、 を含む方法、 (g) selecting a compound that suppresses a decrease in the amount of DNA amplified in step (f) as compared to a control (in the case where the test compound is not administered);
〔16〕 T細胞の抗原刺激応答を抑制する治療薬候補化合物をスクリーニングす る方法であって、 (16) a method for screening a candidate therapeutic compound that suppresses the antigen stimulation response of T cells,
(a) 被検化合物の存在下、 株化 T細胞をリンパ球刺激物質で刺激する工程、 (a) stimulating the established T cells with a lymphocyte stimulating substance in the presence of the test compound,
(b) 該刺激を受けた株化 T細胞から RNA試料を調製する工程、 (c) 該 RM試料に対して、 標識した 〔3〕 に記載の DNAをプローブとして、 ハイブリダイゼ一シヨンを行う工程、 (b) preparing an RNA sample from the stimulated established T cells, (c) a step of performing hybridization on the RM sample using the labeled DNA according to (3) as a probe,
(d) 標識した 〔3〕 に記載の DNAにハイブリダィズする該株化 T細胞由来の RNA量を測定する工程、 (d) measuring the amount of RNA derived from the established T cells that hybridizes to the labeled DNA according to (3),
(e) 対照 (被検化合物非投与の場合) と比較して、 工程 (d) において測定 される RNA量の低下を抑制する化合物を選択する工程、 を含む方法、 (e) selecting a compound that suppresses the decrease in the amount of RNA measured in step (d) compared to a control (in the case where the test compound is not administered),
〔1 7〕 T 細胞の抗原刺激応答を抑制する治療薬候補化合物をスクリーニングす る方法であって、 (17) a method for screening a candidate therapeutic compound that suppresses the antigen stimulation response of T cells,
(a) 被検化合物の存在下、 株化 T細胞をリンパ球刺激物質で刺激する工程、 (a) stimulating the established T cells with a lymphocyte stimulating substance in the presence of the test compound,
(b) 該刺激を受けた株化 T細胞から RNA試料を調製する工程、 (b) preparing an RNA sample from the stimulated established T cells,
( c ) 該 RNA試料に対して逆転写反応を行い cDNAを合成する工程、 (c) performing a reverse transcription reaction on the RNA sample to synthesize cDNA;
(d) 該 cDNAを铸型に、 〔3〕 に記載の DNAをプライマーとして、 ポリメラー ゼ連鎖反応 (PCR) を行う工程、 (d) a step of performing a polymerase chain reaction (PCR) using the cDNA as a type III and the DNA according to [3] as a primer,
(e) 対照 (被検化合物非投与の場合) と比較して、 工程 (d) において増幅 される DNA量の低下を抑制する化合物を選択する工程、 を含む方法、 (e) selecting a compound that suppresses a decrease in the amount of DNA amplified in step (d) compared to a control (in the case where no test compound is administered),
〔18〕 T 細胞が、 モデル動物の末梢血から調製される、 〔10〕 または 〔1 1〕 に記載の方法、 (18) the method of (10) or (11), wherein the T cell is prepared from peripheral blood of a model animal;
〔1 9〕 リンパ球が末梢血から調製される、 〔12〕 から 〔1 5〕 のいずれかに記 載の方法、 (19) the method of any one of (12) to (15), wherein the lymphocytes are prepared from peripheral blood,
〔20〕 抗原がスギ花粉抗原である、 〔1 0〕 から 〔1 9〕 のいずれかに記載の方 法、 (20) the method of any one of (10) to (19), wherein the antigen is a cedar pollen antigen,
に関する。 About.
本発明において、 アレルギー疾患(allergic desease)とはアレルギー反応の関 与する疾患の総称である。 より具体的には、 アレルゲンが同定され、 アレルゲン への曝露と病変の発症に深い結びつきが証明され、 その病変に免疫学的な機序が 証明されることと定義することができる。 ここで、 免疫学的な機序とは、 アレル ゲンの刺激によって T細胞が免疫応答を示すことを意味する。 代表的なアレルギ —疾患には、 気管支喘息、 アレルギー性鼻炎、 アトピー性皮膚炎、 花粉症、 ある いは昆虫アレルギー等を示すことができる。 アレルギー素因(al l ergi c diathes i s)とは、 アレルギー疾患を持つ親から子に伝えられる遺伝的な因子である。 家族 性に発症するアレルギー疾患はァトピー性疾患とも呼ばれ、 その原因となる遺伝 的に伝えられる因子がアトピー素因である。 In the present invention, allergic disease is a general term for diseases associated with allergic reactions. More specifically, it can be defined as identifying the allergen, demonstrating a deep link between exposure to the allergen and the development of the lesion, and demonstrating an immunological mechanism for the lesion. Here, the immunological mechanism is the allele Means that T cells show an immune response upon the stimulation of the gene. Typical allergic diseases can include bronchial asthma, allergic rhinitis, atopic dermatitis, hay fever, or insect allergy. Allergic predisposition (allergic diathes is) is a genetic factor transmitted from parents to children with allergic diseases. Allergic diseases that occur familially are also called atopic diseases, and the genetic factors that cause them are atopic predispositions.
なお、 本発明における 「核酸分子」 には、 DNAおよび RNAが含まれる。 The “nucleic acid molecule” in the present invention includes DNA and RNA.
【発明の実施の形態】 BEST MODE FOR CARRYING OUT THE INVENTION
本発明は、 スギ花粉抗原に対するリンパ球の応答に相関する新規な遺伝子 「78 7J に関する。 本発明者らにより見出された 「787」 cDNAの塩基配列を配列番号: 2 0に示す。 The present invention relates to a novel gene “787J” correlated with the response of lymphocytes to cedar pollen antigen. The nucleotide sequence of the “787” cDNA found by the present inventors is shown in SEQ ID NO: 20.
本発明者らにより単離された 「787」 cDNAの塩基配列は、 「787」 cDNAの部分配 列であるが、 当業者においては、 配列番号: 2 0に記載の 「787」 cDNA の配列情 報を基に、 「787」 の全長 cDNAを単離することは、 通常行いうる。 即ち、 「787」 由 来の配列をプローブとして T細胞 cDNA ライブラリーなどをハイブリダィゼーシ ヨンによってスクリーニングする方法や、 「787」 由来の配列をプライマーとして 用レ T細胞 cDNAライブラリ一などの DNAを铸型として、 プライマ一に特異的な サイズの増幅産物が得られることを指標としてライブラリーをスクリーニングし て cDNAの全長を取得する方法がある。また、 「787」 由来の配列をプライマーとし て用い、 T細胞などの mRNAを一本鎖 cDNAに変換し、 末端にオリゴマーを付加し てから PCRを行う RACE法 (Frohman, M. A. et al .: Proc. Nat l . Acad. Sc i . U SA, 85 : 8992, 1988) によって 「787」 の配列を延長する方法がある。 The nucleotide sequence of the “787” cDNA isolated by the present inventors is a partial distribution sequence of the “787” cDNA, and those skilled in the art will recognize the sequence information of the “787” cDNA described in SEQ ID NO: 20. Isolation of full-length cDNA for “787” based on the information can be usually performed. That is, a method for screening a T cell cDNA library or the like by hybridization using a sequence derived from “787” as a probe, or a method for screening a T cell cDNA library for a T cell cDNA library or the like using a sequence derived from “787” as a primer. There is a method of obtaining the full-length cDNA by screening the library using the 铸 as a marker and obtaining an amplification product having a size specific to the primer as an index. The RACE method (Frohman, MA et al .: Proc.), In which a sequence derived from “787” is used as a primer to convert mRNA from T cells or the like into single-stranded cDNA, add oligomers to the ends, and then perform PCR. Natl. Acad. Sci. USA, 85: 8992, 1988). There is a method of extending the sequence of "787".
本発明における 「配列番号: 2 0に記載の塩基配列を含む核酸分子」 には、 こ のように配列番号: 2 0に記載の 「787」 cDNAの配列情報を基に単離しうる、 「78 7」 の全長 cDNAが含まれる。 The “nucleic acid molecule comprising the nucleotide sequence of SEQ ID NO: 20” in the present invention includes “78” which can be isolated based on the sequence information of “787” cDNA described in SEQ ID NO: 20 as described above. 7 "full-length cDNA.
「787」 は、 被験者のリンパ球において、 花粉抗原曝露後の方が曝露前よりも統 計学的に有意に低い発現を示した。 従って、 「787」 の遺伝子の発現 (mRNAへの転 写およびタンパク質への翻訳を含む) を指標に、 アレルギー疾患の検査、 および T 細胞の抗原刺激応答を抑制する治療薬候補化合物のスクリーニングを行うこと が可能であると考えられる。 「787」 の発現低下は花粉等の抗原刺激に対する T細 胞の応答を示しているので、 アレルギー疾患の既往のある患者において、 「787」 の発現を指標としてその患者の特定抗原被曝に対する応答の推移をモニターする ことは、 病気の状態の把握や治療への反応の検査に役立つ。 “787” indicates that lymphocytes in subjects were more consistent after pollen antigen exposure than before exposure. The expression was statistically significantly lower. Therefore, using the expression of the “787” gene (including transcription into mRNA and translation into protein) as an index, testing for allergic diseases and screening for candidate therapeutic compounds that suppress T cell antigen stimulation response It is considered possible. Decreased expression of “787” indicates the response of T cells to stimulation of antigens such as pollen.In patients with a history of allergic disease, expression of “787” is used as an index to determine the response of the patient to specific antigen exposure. Monitoring the transition is helpful in understanding the state of the disease and examining response to treatment.
本発明において検査 ·治療の対象となるアレルギー疾患としては、 特にスギ花 粉症が好ましい。 As the allergic disease to be tested and treated in the present invention, cedar pollinosis is particularly preferred.
本発明におけるアレルギー疾患の検査における「787」の遺伝子の発現の検出は、 「787」遺伝子にハイプリダイズする核酸をプローブとした八ィプリダイゼーショ ン技術、 または本発明の遺伝子にハイプリダイズする DNAをプライマーとした遺 伝子増幅技術を利用して行うことが可能である。 Detection of the expression of the "787" gene in the test for an allergic disease according to the present invention can be performed by using an hybridization technique using a nucleic acid that hybridizes to the "787" gene as a probe, or by hybridizing to the gene of the present invention. It can be performed using gene amplification technology using DNA as a primer.
本発明の検査に用いられるプローブまたはプライマ一としては、 「787」 遺伝子 に特異的にハイブリダィズし、少なくとも 15ヌクレオチドの鎖長を有する核酸分 子が用いられる。 ここで 「特異的にハイブリダィズする」 とは、 通常のハイプリ ダイゼ一シヨン条件下、 好ましくはストリンジェントなハイブリダィゼ一シヨン 条件下で、 他の遺伝子をコードする DNAおよび Zまたは RNAとクロスハイブリダ ィゼーシヨンが有意に生じないことを指す。 たとえば、 Express Hybr i d i zat i on Solut i on (CL0NTECH社製)中でプローブと転写膜を 68ででハイブリダィゼ一ショ ンし、 最終的に 0. 1 X SS 0. 05 % SDS溶液にて、 50°Cで洗浄することにより、 ストリンジェントな条件とすることができる。 As the probe or primer used in the test of the present invention, a nucleic acid molecule that specifically hybridizes to the “787” gene and has a chain length of at least 15 nucleotides is used. The term "specifically hybridizes" as used herein means that under normal hybridization conditions, preferably under stringent hybridization conditions, DNA and / or Z or RNA encoding other genes are cross-hybridized. Indicates that it does not occur significantly. For example, the probe and the transfer membrane were hybridized at 68 in Express Hydidi zat ion on Solut ion (manufactured by CL0NTECH), and finally, 0.1 X SS 0.05% SDS solution was used. Stringent conditions can be achieved by washing at ° C.
本発明の検査に用いるこれら核酸分子は合成されたものでも天然のものでもよ い。 また、 ハイブリダィゼーシヨンに用いるプローブ DNAは、 通常、 標識したも のが用いられる。 標識としては、 例えば、 DNA ポリメラ一ゼ Iを用いるニックト ランスレーシヨンによる標識、 ポリヌクレオチドキナーゼを用いる末端標識、 ク レノ一フラグメントによるフィルイン末端標識 (Berger SL, Ki匪 el AR. (1987) Guide to Molecular Cloning Techniques, Method in Enzymology, Academic P ress ; Hames BD, Higgins SJ (1985) Genes Probes: A Practical Approach. IR L Press ; Sambrook J, Fr i tsch EF, Maniat is T. (1989) Molecular Cloning: a Laboratory Manu l, 2nd Edn. Cold Spring Harbor Laboratory Press) ¾腿ポ リメラーゼを用いる転写による標識 (Melton DA, Krieg, PA, Rebagkiati MR, Ma niatis T, Zinn K, Green MR. (1984) Nucleic Acid Res. , 12, 7035-7056)、放射 性同位体を用いない修飾ヌクレオチドを DNAに取り込ませる方法 (Kricka LJ. (1 992) Nonisotopic DNA Probing Techniques. Academic Press)等が挙けられる。 ハイブリダィゼーシヨン技術を利用したアレルギー疾患の検査は、 例えば、 ノ ーザンハイブリダィゼーシヨン法、 ドットブロット法、 DNA マイクロアレイを用 いた方法などを使用して行うことができる。 These nucleic acid molecules used in the test of the present invention may be synthetic or natural. The probe DNA used for hybridization is usually labeled. Labels include, for example, nick translation labeling using DNA polymerase I, end labeling using polynucleotide kinase, Fill-in labeling with Reno fragment (Berger SL, Ki-band el AR. (1987) Guide to Molecular Cloning Techniques, Method in Enzymology, Academic Press; Hames BD, Higgins SJ (1985) Genes Probes: A Practical Approach. IRL . Press; Sambrook J, Fr i tsch EF, Maniat is T. (1989) Molecular Cloning: a Laboratory Manu l, 2nd Edn Cold Spring Harbor Laboratory Press) labeling with transcription with ¾ Momopo polymerase (Melton DA, Krieg, PA , Rebagkiati MR, Maniatis T, Zinn K, Green MR. (1984) Nucleic Acid Res., 12, 7035-7056), a method of incorporating modified nucleotides without radioisotopes into DNA (Kricka LJ. 992) Nonisotopic DNA Probing Techniques. Academic Press). Testing of allergic diseases using the hybridization technology can be performed using, for example, a Northern hybridization method, a dot blot method, a method using a DNA microarray, or the like.
一方、 遺伝子増幅技術を利用した方法としては、 例えば、 RT-KR法を用いるこ とができる。 RT- PCR法においては、 遺伝子の増幅過程において実施例 8に示すよ うに PCR増幅モニター法を用いれば、 「787」 遺伝子の発現のより正確な定量を行 うことができる。 On the other hand, as a method using gene amplification technology, for example, the RT-KR method can be used. In the RT-PCR method, the expression of the “787” gene can be more accurately quantified by using the PCR amplification monitor method as shown in Example 8 in the process of gene amplification.
PCR遺伝子増幅モニタ一法においては、 両端に互いの蛍光を打ち消し合う異な つた蛍光色素で標識したプローブを用い、 検出対象 (DNAもしくは RNAの逆転写 産物)にハイプリダイズさせる。 PCR反応が進んで Taqポリメラーゼの 5' -3'ェク ソヌクレアーゼ(exonuclease)活性により同プローブが分解されると二つの蛍光 色素が離れ、 蛍光が検出されるようになる。 この蛍光の検出をリアルタイムに行 う。 検出対象についてコピー数の明らかな標準試料について同時に測定すること により、 PCR 増幅の直線性のあるサイクル数で目的試料中の検出対象のコピー数 を決定する (Holland, P.M. et al., 1991, Pro Natl. Acad. Sci. USA 88:72 76-7280; Livak, K. J. et al. , 1995, PCR Methods and Applications 4(6) :35 7-362; He id, C. A. et al. , Genome Research 6:986-994; Gibson, E. M. U. e t al ., 1996, Genome Research 6 : 995-1001 )。 PCR 増幅モニタ一法においては、 例えば、 ABI PRISM7700 (パーキンエルマ一社) を用いることができる。 In the PCR gene amplification monitor method, probes that are labeled with different fluorescent dyes that cancel each other's fluorescence at both ends are used to hybridize to the detection target (DNA or reverse transcript of RNA). When the PCR proceeds and the probe is degraded by the 5'-3 'exonuclease activity of Taq polymerase, the two fluorescent dyes are separated and the fluorescence is detected. This fluorescence is detected in real time. The number of copies of the target in the target sample is determined based on the number of linear cycles of PCR amplification by simultaneously measuring a standard sample with a clear copy number for the target (Holland, PM et al., 1991, Pro Natl. Acad. Sci. USA 88:72 76-7280; Livak, KJ et al., 1995, PCR Methods and Applications 4 (6): 35 7-362; Heid, CA et al., Genome Research 6: 986. -994; Gibson, EMU e tal., 1996, Genome Research 6: 995-1001). In the PCR amplification monitor method, for example, ABI PRISM7700 (PerkinElmer) can be used.
また、 本発明のアレルギー疾患の検査は、 「787」 によりコードされるタンパク 質を検出することにより行うことも考えられる。 このような検査方法としては、 例えば、 「787」 によりコードされるタンパク質に結合する抗体を利用したウェス 夕ンブロッテイング法、 免疫沈降法、 ELI SA法などを利用することができる。 本発明の 「787」 によりコードされるタンパク質の抗体は、 当業者に周知の技法 を用いて、 ポリクローナル抗体またはモノクローナル抗体として得ることができ る (Mi l s te i n C, e t al . , 1983, Nature 305 (5934): 537-40)。 抗原に用いるタン パク質もしくはその部分ペプチドは、 例えば「787」遺伝子もしくはその一部を発 現べクタ一に組込み、 これを適当な宿主細胞に導入して、 形質転換体を作成し、 該形質転換体を培養して組み換えタンパク質を発現させ、 発現させた組み換え夕 ンパク質を培養体または培養上清から精製することにより得ることができる。 本発明におけるアレルギー疾患の検査の結果、 本発明の遺伝子の発現が有意に 低ければ、 被験者はスギ花粉抗原のようなアレルゲンに対する免疫応答を生じた 状態にあると判定することができる。 花粉特異的抗体価や、 症状などと併せて、 本発明の遺伝子の発現レベルの測定を、 アレルギー疾患の検査に用いることが可 能である。 In addition, the test for an allergic disease of the present invention may be performed by detecting the protein encoded by “787”. As such a test method, for example, a Western blotting method using an antibody that binds to a protein encoded by “787”, an immunoprecipitation method, an ELISA method, and the like can be used. Antibodies to the protein encoded by the "787" of the present invention can be obtained as polyclonal antibodies or monoclonal antibodies using techniques well known to those skilled in the art (Milstein in C, et al., 1983, Nature 305 (5934): 537-40). For example, the protein or its partial peptide used as an antigen is prepared by incorporating the “787” gene or a part thereof into an expression vector, introducing this into an appropriate host cell, and preparing a transformant. It can be obtained by culturing the transformant to express the recombinant protein, and purifying the expressed recombinant protein from the culture or the culture supernatant. As a result of the test for an allergic disease according to the present invention, if the expression of the gene of the present invention is significantly low, it can be determined that the subject has developed an immune response to an allergen such as cedar pollen antigen. The measurement of the expression level of the gene of the present invention, together with the pollen-specific antibody titer, symptoms, etc., can be used for testing for allergic diseases.
T細胞に発現する 「787」 遺伝子は花粉抗原曝露後に発現が低下している。 「78 7」遺伝子はスギ花粉抗原刺激に対する生体の応答として発現量の減少する遺伝子 であり、 「787」 遺伝子の発現をモニターすることによって花粉症治療薬のスクリ —ニングを行うことができる。 「787」 遺伝子は健常者、 花粉症患者を問わず花粉 抗原曝露により発現量が減少する。 花粉症症状の有無は、 抗原刺激に対する 「78 7J遺伝子の応答以降の違いによるものと推測される。 しかしこのようなケースで も 「787」 遺伝子の発現低下は T細胞の応答性の亢進に対応しており、 従って 「7 87」 遺伝子の発現をモニターすることによってアレルギー疾患治療薬のスクリー ニングを行うことはできる。 The expression of the “787” gene expressed in T cells is reduced after pollen antigen exposure. The “787” gene is a gene whose expression level decreases as a response of the living body to cedar pollen antigen stimulation, and screening of a therapeutic agent for hay fever can be performed by monitoring the expression of the “787” gene. The expression level of the “787” gene is reduced by pollen antigen exposure in both healthy and hay fever patients. Presence or absence of hay fever symptoms is presumed to be due to the difference since the response of the "787J gene" to antigen stimulation. However, even in such cases, decreased expression of the "787" gene corresponds to increased T cell responsiveness Therefore, by monitoring the expression of the “7 87” gene, Can do it.
本発明の T細胞の抗原刺激応答を抑制する治療薬候補化合物のスクリーニング 方法は、 in vivoで行なうことも in vi t roで行なうこともできる。 in v ivoでの スクリーニングにおいては、 例えば、 マウス等のモデル動物に、 候補薬剤の投与 および花粉抗原での刺激を行った後、 末梢血より T細胞を分離し、 「787」 の転写 産物を測定する。 あるいは、 マウス等のモデル動物に候補薬剤を投与した後、 末 梢血よりリンパ球を分離し、該リンパ球をスギ花粉抗原等で i n vi t roで刺激する。 該刺激後のリンパ球から T細胞を分離し、 その 「787」遺伝子の転写産物を測定す る。 これら測定の結果、 対照 (候補薬剤を投与しない場合) と比べて 「787」 遺伝 子の転写量の低下を抑制する化合物を選択する。 ここで花粉抗原による刺激は、 T 細胞において抗原特異的なアレルギー反応を惹起し、 それに対する候補化合物の 治療効果を判定することを目的として行うものである。 なお本発明において、 「7 87」 遺伝子の転写量の低下を抑制するとは、 抗原刺激を受けた T細胞と比較した ときに、 候補化合物との接触によってより高い水準の転写量が維持される場合を 言う。 したがって、 候補化合物が抗原刺激を受ける前の 「787」 遺伝子の転写量を 越える水準を誘導する場合(すなわち転写が増大するケース)、その化合物は本発 明におけるスクリーニング方法において選択すべき化合物である。 The method of the present invention for screening a candidate therapeutic compound for suppressing a T cell antigen-stimulated response can be performed in vivo or in vitro. For in vivo screening, for example, after administering a candidate drug and stimulating with a pollen antigen to a model animal such as a mouse, T cells are separated from peripheral blood and the transcript of “787” is measured. I do. Alternatively, after administering a candidate drug to a model animal such as a mouse, lymphocytes are separated from peripheral blood, and the lymphocytes are stimulated with cedar pollen antigen or the like with in vitro. T cells are separated from the lymphocytes after the stimulation, and the transcript of the “787” gene is measured. As a result of these measurements, a compound that suppresses a decrease in the transcription level of the “787” gene compared to a control (when no candidate drug is administered) is selected. Here, the stimulation with the pollen antigen is performed for the purpose of eliciting an antigen-specific allergic reaction in T cells and determining the therapeutic effect of the candidate compound on it. In the present invention, the term “suppressing the decrease in the transcription amount of the“ 787 ”gene” means that a higher level of transcription amount is maintained by contact with a candidate compound as compared to antigen-stimulated T cells. Say Therefore, if a candidate compound induces a level that exceeds the transcription level of the “787” gene before being subjected to antigenic stimulation (ie, if transcription is increased), the compound is a compound to be selected in the screening method of the present invention. .
また、 in vi troでのスクリーニングにおいては、 例えば、 ヒトゃマウス等から 末梢血リンパ球を採取し、 スギ花粉抗原などで、 該末梢血リンパ球を i n vi t ro で刺激する。 in vi tro刺激の際に候補化合物を添加する。 その後、 刺激された末 梢血リンパ球から T細胞を分離し、 「787」 の転写産物を測定する。 この測定の結 果、 対照 (候補薬剤を接触させない場合) と比べて 「787」 遺伝子の転写量の低下 を抑制する化合物を選択する。 In the in vitro screening, for example, peripheral blood lymphocytes are collected from a human mouse or the like, and the peripheral blood lymphocytes are stimulated with in vitro with a cedar pollen antigen or the like. Candidate compounds are added during in vitro stimulation. The T cells are then separated from the stimulated peripheral blood lymphocytes and the transcript of “787” is measured. As a result of this measurement, a compound that suppresses a decrease in the transcription amount of the “787” gene compared to a control (when the candidate drug is not contacted) is selected.
また、 本発明の T細胞の抗原刺激応答を抑制する治療薬候補化合物のスクリー ニングは、 株化 T細胞を用いて行なうこともできる。 例えば、 Mo l t4細胞、 Jurka t細胞などの株化 T細胞をリンパ球刺激物質で i n vi t roで刺激する。 リンパ球刺 激物質としては、 例えば、 カルシウムィオノフォア (A23187)、 PMA、 フイ トへマ グルチニン (PHA) などが挙げられる。 i n v i t ro刺激の際に候補薬剤を添加する。 その後、 該株化 T細胞における 「787」 遺伝子の転写量を測定する。 この測定の結 果、 対照 (候補薬剤を接触させない場合) と比べて 「787」 遺伝子の転写量の低下 を抑制する化合物を選択する。 In addition, the screening of candidate therapeutic compounds that suppress the antigen-stimulated response of T cells of the present invention can also be performed using established T cells. For example, established T cells such as Molt4 cells and Jurka t cells are stimulated in vitro with a lymphocyte stimulator. Lymphocyte sting Examples of the intense substance include calcium ionophore (A23187), PMA, and phytohemagglutinin (PHA). Add candidate drug during invitro stimulation. Thereafter, the transcription amount of the “787” gene in the established T cells is measured. As a result of this measurement, a compound that suppresses a decrease in the transcription amount of the “787” gene compared to a control (when the candidate drug is not contacted) is selected.
本発明による T細胞の抗原刺激応答を抑制する治療薬候補化合物のスクリー二 ングにおける 「787」 の遺伝子の発現の検出は、 本発明のアレルギー疾患の検査と 同様、 「787」 遺伝子にハイブリダィズする核酸をプローブとしたハイブリダィゼ ーシヨン技術、 または本発明の遺伝子にハイブリダィズする DNAをプライマーと した遺伝子増幅技術を利用して行うことが可能である。 Detection of the expression of the "787" gene in the screening of a therapeutic drug candidate compound that suppresses the T cell antigen-stimulatory response according to the present invention can be performed by detecting the nucleic acid hybridizing to the "787" gene in the same manner as in the test for allergic disease of the present invention. The hybridization can be carried out using a hybridization technique using DNA as a probe, or a gene amplification technique using DNA that hybridizes to the gene of the present invention as a primer.
ハイブリダィゼ一シヨン技術を利用した方法としては、 例えば、 ノーザンハイ ブリダィゼーシヨン法、 ドットブロット法、 DNA マイクロアレイを用いた方法な どを使用して行うことができる。一方、遺伝子増幅技術を利用した方法としては、 RT - PCR法を用いることができる。 RT-PCR法においては、遺伝子の増幅過程におい て実施例 8に示すような PCR増幅モニター法を用いれば、 「787」 遺伝子の発現の より正確な定量を行うことができる。 As a method using the hybridization technology, for example, a Northern hybridization method, a dot blot method, a method using a DNA microarray, or the like can be used. On the other hand, as a method utilizing the gene amplification technique, an RT-PCR method can be used. In the RT-PCR method, the expression of the “787” gene can be more accurately quantified by using a PCR amplification monitoring method as shown in Example 8 in the gene amplification process.
これらスクリーニングに用いる被検化合物としては、 ステロイド誘導体等既存 の化学的方法により合成された化合物標品、 コンビナトリアルケミストリーによ り合成された化合物標品のほか、 動 ·植物組織の抽出物もしくは微生物培養物等 の複数の化合物を含む混合物、またそれらから精製された標品などが挙げられる。 本発明の T細胞の抗原刺激応答を抑制する治療薬候補化合物のスクリーニング 方法により単離される化合物は、 免疫応答を抑制する薬剤の候補になる。 The test compounds used in these screenings include compound preparations synthesized by existing chemical methods such as steroid derivatives, compound preparations synthesized by combinatorial chemistry, extracts of animal and plant tissues, or microbial cultures. A mixture containing a plurality of compounds such as a product, a sample purified from the mixture, and the like. The compound isolated by the method of the present invention for screening a candidate therapeutic compound for suppressing a T cell antigen-stimulated response is a candidate for a drug that suppresses an immune response.
本発明のスクリーニング方法により単離される化合物を、 医薬品として用いる 場合には、 公知の製剤学的製造法により製剤化して用いることが可能である。 例 えば、 薬理学上許容される担体または媒体 (生理食塩水、 植物油、 懸濁剤、 界面 活性剤、 安定剤など) とともに患者に投与される。 投与は、 化合物の性質に応じ て、 経皮的、 鼻腔内的、 経気管支的、 筋内的、 静脈内、 または経口的に行われる。 投与量は、 患者の年齢、 体重、 症状、 投与方法などにより変動するが、 当業者で あれば適宜適当な投与量を選択することが可能である。 図面の簡単な説明 When the compound isolated by the screening method of the present invention is used as a pharmaceutical, it can be used as a pharmaceutical preparation by a known pharmaceutical production method. For example, it is administered to a patient together with a pharmacologically acceptable carrier or vehicle (such as saline, vegetable oils, suspensions, surfactants, stabilizers, etc.). Dosage depends on the nature of the compound Performed percutaneously, intranasally, transbronchially, intramuscularly, intravenously, or orally. The dose varies depending on the patient's age, body weight, symptoms, administration method and the like, but those skilled in the art can appropriately select an appropriate dose. BRIEF DESCRIPTION OF THE FIGURES
図 1は、 血液を採取した被験者 10人、 計 18の血液試料におけるスギ花粉特異 的 IgE抗体の抗体価を表す図である。 被験者 A〜】 (試料番号 1〜18) の各血液試 料のスギ花粉特異的 IgE抗体の値を AU/mlで表した。 花粉飛散前を左 (白いカラ ム)、 飛散後を右 (黒いカラム) に対で表した。 被験者 Aおよび Bは、 花粉飛散後 の血液のみ採取した。 FIG. 1 is a diagram showing the antibody titers of cedar pollen-specific IgE antibodies in a total of 18 blood samples from 10 subjects who collected blood. The values of cedar pollen-specific IgE antibodies in each blood sample of Test Subjects A to (sample numbers 1 to 18) were expressed in AU / ml. The pair before pollen scattering is shown on the left (white column), and the one after scattering is shown on the right (black column). Subjects A and B collected only blood after pollen scattering.
図 2は、 スギ花粉飛散時期前後によって群分けした場合の飛散前群および飛散 後群における 「787」 の発現変化を示す図である。 エラーバーは標準偏差を表す。 発明を実施するための最良の形態 FIG. 2 is a diagram showing changes in the expression of “787” in the pre-scattering group and the post-scattering group when grouping was performed before and after the cedar pollen scattering time. Error bars represent standard deviation. BEST MODE FOR CARRYING OUT THE INVENTION
以下、 本発明を実施例により具体的に説明するが、 本発明はこれら実施例に制 限されるものではない。 Hereinafter, the present invention will be described specifically with reference to Examples, but the present invention is not limited to these Examples.
[実施例 1] 10人の成人ポランティアからの血液採取 [Example 1] Blood collection from 10 adult volunteers
花粉飛散前後の T細胞を採取するため、成人ボランティア 10名(A〜; 0から 10 mlの血液サンプルを、 花粉飛散前および花粉飛散後に採取した。 最初の血液サン プルは、 日本のスギ花粉飛散の季節の前(1997年 1月および 2月)に採取し、 2回 目は日本のスギ花粉飛散後(1997年 3、 4および 5月)に採取した。 ポランティア のうち 8人については、 2つの時期のサンプルを得た。 残る 2名のポランティア に関しては、 花粉飛散後のサンプルのみ入手できた。 これらの血液サンプルの一 部を用いて、 スギ花粉特異的 IgEの量を測定した。 特異的 IgEの測定はペーパー ディスクを固相とする RAST法 (radio allergo sorbent test, Wide, L. et, a 1.: Lancet 2: 1105-1107, 1967) を改良した CAP RAST法 (Pharmacia社) によ り行った。 Pharmacia 社製の標準の抗体価を含む血清を用いて、 それを基準にし てそれぞれの検体の IgE抗体価 (単位は Pharmacia RAST Unit, PRU、 あるいは A U (arbitrary unit) とも表示する) を決定した。 Blood samples of 10 adult volunteers (A ~; 0 to 10 ml) were collected before and after pollen dispersal to collect T cells before and after pollen dispersal. The first blood sample was Japanese cedar pollen dispersal And before the season (January and February 1997) and the second after pollen dispersal in Japan (March, April and May 1997). For the remaining two volunteers, only samples obtained after pollen dispersal were obtained, and a part of these blood samples was used to measure the amount of cedar pollen-specific IgE. IgE is measured by the CAP RAST method (Pharmacia), which is an improved version of the RAST method (radio allergo sorbent test, Wide, L. et, a1: Lancet 2: 1105-1107, 1967) using a paper disk as a solid phase. I went. Using serum containing a standard antibody titer manufactured by Pharmacia, the IgE antibody titer (unit is also indicated as Pharmacia RAST Unit, PRU or AU (arbitrary unit)) of each sample was determined based on the serum.
測定された各被験者における花粉飛散前後でのスギ花粉特異的 IgE値を図 1に 示す。 図に示されるように、 10人の被験者の大半で、 花粉被曝後にスギ花粉特異 的 IgEの血清中の濃度が増加した。 アトピー素因を有するかどうかは、 スギ花粉 特異的 IgEの CAP RAST試験の値が 2より大きいかどうかで判断した。すなわち、 被験者 A〜Gおよび Iの 8人の被験者をアトピー素因群(以後「患者」 とも記す)、 被験者 H、 】の 2人を健常者 (以後 「正常群」 とも記す) とした。 8人のアトピー 素因を有する被験者のうち 7人が、 花粉飛散後にアレルギー性鼻炎の症状を示し た。 Fig. 1 shows the measured cedar pollen-specific IgE values before and after pollen scattering in each subject. As shown, most of the 10 subjects had increased serum levels of cedar pollen-specific IgE after pollen exposure. The presence of atopic predisposition was determined by whether the value of the CAP RAST test for cedar pollen-specific IgE was greater than 2. That is, eight subjects A to G and I were considered to be atopic predisposition groups (hereinafter also referred to as “patients”), and two subjects H and were considered to be healthy subjects (hereinafter also referred to as “normal groups”). Of the eight subjects with an atopic predisposition, seven exhibited symptoms of allergic rhinitis after pollen dispersal.
[実施例 2 ] 血液試料からのリンパ球画分の調製 [Example 2] Preparation of lymphocyte fraction from blood sample
血液 10 mlから T細胞を調製する場合は、 以下のようにした。 まずノボ社製等 のへパリン 1 mlで注射筒壁を万遍なく処理し、 最終濃度 50 unit/mlのへパリン を含む 10 ml注射筒に採血した。 このとき一人の採血に 22G針を 2本準備した。 注射針をはずし、 50 mlの遠心チューブ (ポリプロピレン製) に移した。 1500 rp m、 室温で 5分間遠心し、 できるだけ表面近くから 1.1 ml を採取し、 15000 rpm で 5分間、 4 で遠心して上清 1 ml を血漿 (plasma)として回収した。 血漿を回収 した残りに 3%のデキストラン(ナカライ社製) を含む 0.9% NaClを等量(9 ml) 加え、 静かに数回転倒させて混和した。 その後 30分間室温で静置した。 PRP(Pla telet rich plasma,血小板に富む血漿)を別の 15 ml遠心チューブに移し、 1200 rpm (トミー社製の遠心機で 150Xgに相当する) で 5分間、 室温で遠心した。 遠 心後、 血小板は上清にあった。 沈殿した細胞をギブコ社等から入手した Ca、 Mg 不含の HBSS 5 mlに懸濁した。 これを、 パスツールピぺットを用いて Ficol Paqu e (フアルマシア社製)が 5 mlが入ったチューブ(ファルコンチューブ: 2006また は 2059;ポリプロピレン製) 1本に上層した。 1200 i"pmで 5分間遠心後、 1500 rpm (Tomy社製の遠心機で 400Xgに相当する) で 30分間室温で遠心した。 その 結果、 顆粒細胞(granulocyte), 赤血球(erythrocyte)が沈殿し、 フイコール層を 挟んで中間層にリンパ球(ly即 hocyte)、 単球(monocyte;)、 血小板(platelet)が含 まれた。 パスツールピペットで中間層を回収し、 2〜3倍の容量の BSA/PBS(0.5% BSA, 2 mM EDTA in PBS, pH7.2;使用直前に脱気した)を添加し、 1200 rpm, 4°C で 5分間遠心した。 沈殿を回収し、 BSA/PBSで 1回洗浄した。 1回目の洗浄後、 細 胞を 5 mlに懸濁し、その一部をトリパンブルーで 2倍に希釈して細胞数を測定し た。 全細胞数は約 IX 107であった。 これをリンパ球画分とした。 When preparing T cells from 10 ml of blood, the procedure was as follows. First, the wall of the syringe was uniformly treated with 1 ml of heparin from Novo, etc., and blood was collected in a 10 ml syringe containing a final concentration of 50 unit / ml heparin. At this time, two 22G needles were prepared for one blood sample. The injection needle was removed and transferred to a 50 ml centrifuge tube (made of polypropylene). After centrifugation at 1500 rpm for 5 minutes at room temperature, 1.1 ml was collected from the surface as close as possible, and centrifuged at 15000 rpm for 5 minutes at 4 to collect 1 ml of the supernatant as plasma. An equal volume (9 ml) of 0.9% NaCl containing 3% dextran (manufactured by Nacalai) was added to the rest of the collected plasma, and the mixture was gently inverted several times to mix. Then, it was left still at room temperature for 30 minutes. PRP (Pla teletrich plasma, platelet-rich plasma) was transferred to another 15 ml centrifuge tube, and centrifuged at 1200 rpm (equivalent to 150 Xg in a Tommy centrifuge) for 5 minutes at room temperature. After centrifugation, platelets were in the supernatant. The precipitated cells were suspended in 5 ml of Ca- and Mg-free HBSS obtained from Gibco or the like. This was overlaid on one tube (Falcon tube: 2006 or 2059; made of polypropylene) containing 5 ml of Ficol Paque (Pharmacia) using a Pasteur pipe. After centrifugation at 1200 i "pm for 5 minutes, 1500 The mixture was centrifuged at room temperature for 30 minutes at rpm (equivalent to 400 × g in a centrifuge manufactured by Tomy). As a result, granulocytes and erythrocytes precipitated, and lymphocytes (ly immediate hocytes), monocytes (monocytes;), and platelets (platelets) were contained in the middle layer with the ficoll layer interposed therebetween. Collect the middle layer with a Pasteur pipette, add 2 to 3 volumes of BSA / PBS (0.5% BSA, 2 mM EDTA in PBS, pH 7.2; degas immediately before use), and add 1200 rpm, 4 rpm. Centrifuged at ° C for 5 minutes. The precipitate was collected and washed once with BSA / PBS. After the first washing, cells were suspended in 5 ml, and a part thereof was diluted 2-fold with trypan blue, and the number of cells was counted. Total cell number was about IX 10 7. This was used as the lymphocyte fraction.
[実施例 3 ] リンパ球画分からの T細胞の分離 [Example 3] Separation of T cells from lymphocyte fraction
実施例 2で得たリンパ球画分を 1200 i"pmで 4 、 5分間遠心し、 100 /xlあたり 108になるように BSA/PBSに懸濁した。容量は約 20 1になった。 これをエツペン ドルフチューブ (1.5 ml) に移し、 CD3マイクロビーズ液を添加した。 その後、 3 0分間 4〜10°Cに放置した (このとき氷上には置かなかった)。 この試料をマグネ チックセルソ一夕一(MACS) (Miltenyi Biotech Inc.製)で以下のように処理した。 The lymphocyte fraction obtained in Example 2 was centrifuged at 1200 i "pm for 4 and 5 minutes, and suspended in BSA / PBS at 10 8 per 100 / xl. The volume became about 201. This was transferred to an Eppendorf tube (1.5 ml), to which the CD3 microbead solution was added, and then left for 30 minutes at 4 to 10 ° C (not placed on ice at this time). The treatment was performed as follows using Yuichi (MACS) (manufactured by Miltenyi Biotech Inc.).
MS+/RS+カラムを Mini MACSまたは Vario MACSセパレ一シヨンュニットに装着 した (針は付けなかった)。 500 1 の BSA/PBSをカラムに静かにアプライし、 Ά ッファ一は流し出した。 次に CD3マイクロビーズ標識した細胞をカラムにァプラ ィした。 カラムを 500 ^1で 3回洗浄した (B細胞画分)。 カラムをセパレ一ショ ンュニットからはずし、 溶出液を集めるチューブ上に置いた。 1 mlの BSA/PBSを カラムにアプライし、 カラム添付のプランジャーを用いポジティブ細胞を急速に 流し出した。 これを T細胞画分とした。 The MS + / RS + column was mounted on a Mini MACS or Vario MACS separation unit (without needles). 500 1 of BSA / PBS was gently applied to the column, and the buffer was poured out. Next, cells labeled with CD3 microbeads were applied to the column. The column was washed three times with 500 ^ 1 (B cell fraction). The column was removed from the separation unit and placed on a tube collecting the eluate. 1 ml of BSA / PBS was applied to the column, and positive cells were rapidly flushed out using a plunger attached to the column. This was used as the T cell fraction.
得られた T細胞画分について、 1200 rpm, 5分間 4°Cで遠心した。 沈殿を BSA/P BSで 2回洗浄した。 2回目の洗浄後、 細胞を 1 mlに懸濁し、 その一部をトリパン ブルーで 2倍に希釈して細胞数を測定した。 全細胞数は約 4X 106であった。 The obtained T cell fraction was centrifuged at 1200 rpm for 5 minutes at 4 ° C. The precipitate was washed twice with BSA / PBS. After the second washing, the cells were suspended in 1 ml, and a part thereof was diluted 2-fold with trypan blue to count the number of cells. The total cell number was about 4 × 10 6 .
[実施例 4 ] T細胞からの全 RNAの調製 [Example 4] Preparation of total RNA from T cells
T細胞からの全 RNAの調製は RNeasy Mini (Qiagen製) を用い、 原則として添 付のマニュアルに従い行った。 操作はすべて手袋を着用して、 室温で行った。 ま たゥォッシュバッファー RPEに 4倍量のエタノ一ルを加えた。 リシスバッファー R LTには 10 1/ml の 2 -メルカプトエタノールを加えた。細胞浮遊液を 1000〜1200 i"pmで 5分間遠心し、 上清をァスピレ一シヨンで除いた。 沈殿に 350 // 1 のリシ スバッファー RLT (2-メルカプトエタノールを含む) 溶液を加えた。 この段階で、 R LT バッファ一中の細胞のライセ一トは、 -70°Cで保存可能であった。 細胞のライ セ一トを冷凍保存していた場合は、 37°Cで 10〜15分間ィンキュベ一トして、不溶 物が見えるようなら最大速度で 3分間遠心し、 上清のみを回収した。 このライセ —トを 20Gの力テラン針を付けた注射筒でホモゲナイズ後、 キアシュレツダ一(Q IAshredder)で処理した。 (即ち、通常 350 1の細胞のライセートをキアシュレツ ダーュニッ卜にピぺットマンを用いてアプライした。これを 1500 卬 mで 2分間遠 心し、 流出液を回収した。) 350 1の 70%エタノールを加え、 ピペッティングし てよく混ぜた。 RNeasyスピンカラムを添付の 2 ml チューブに装着し、 細胞のラ イセート混合物をアプライし、 8000 X g (11500 ι·ρπι)で 1分間遠心し、 流出液は捨 てた。 ゥォッシュバッファー RW1 700 1 をカラムにアプライし、 5分間フタをし た形で立てた。 11500 rpmで 15秒間遠心し、 流出液は捨てた。 カラムを新しい 2 ml チューブに装着し、 ゥォッシュバッファー RPE (エタノールを含む) 500 1 をカラムにアプライした後、 11500 rpmで 15秒間遠心し、 流出液は捨てた。 ゥォ ッシュバッファー RPE 500 1をカラムにアプライし、最大速度で 2分間遠心した。 カラムを新しい 1. 5 mlチューブに装着し、 DEPC処理した水 30 1をアプライし、 フタをして 10分間立てた。 11500 卬 mで 10分間遠心し、 全 RNAを得た。 濃度を 測定し、 量が少ないようなら、 再度カラムを新しい 1. 5 mlチューブに装着し、 D EPC処理した水 30 1 をアプライし、 フタをして 10分間立て、 11500 rpmで 10 分間遠心した。 For preparation of total RNA from T cells, use RNeasy Mini (manufactured by Qiagen). Performed according to the attached manual. All operations were performed at room temperature, wearing gloves. Four volumes of ethanol were added to Posh Buffer RPE. Lysis buffer RLT was supplemented with 10 1 / ml 2-mercaptoethanol. The cell suspension was centrifuged at 1000-1200 i "pm for 5 minutes, and the supernatant was removed by aspirating. A 350 // 1 lysis buffer RLT (containing 2-mercaptoethanol) solution was added to the precipitate. At this stage, the lysate of the cells in the RLT buffer could be stored at -70 ° C. If the lysate of the cells had been stored frozen, 10-15 at 37 ° C. After incubating for 3 min, if insolubles were visible, centrifugation was performed at maximum speed for 3 min, and only the supernatant was collected.The lysate was homogenized with a syringe equipped with a 20 G force teran needle, and then purified with Kia Shredda ( (That is, the lysate of 3501 cells was usually applied to a Kyaschlets d'Aunit using a Pittman. This was centrifuged at 1500 µm for 2 minutes, and the effluent was collected.) Add 350 1 of 70% ethanol, pipet Attach the RNeasy spin column to the attached 2 ml tube, apply the lysate mixture of cells, centrifuge at 8000 X g (11500 ι · ρπι) for 1 minute, and discard the effluent. Wash buffer RW1 700 1 was applied to the column and the tube was capped for 5 minutes, centrifuged at 11500 rpm for 15 seconds, and the effluent was discarded. After applying Wash Buffer RPE (containing ethanol) 500 1 to the column, centrifuged at 11500 rpm for 15 seconds and discarded the effluent Wash Buffer RPE 500 1 was applied to the column and centrifuged at maximum speed for 2 minutes The column was placed in a new 1.5 ml tube, DEPC-treated water 301 was applied, the lid was put on the tube, and the tube was allowed to stand for 10 minutes, followed by centrifugation at 11500 卬 m for 10 minutes to obtain total RNA. Measure and if the volume is low, The sample was placed in a new 1.5 ml tube, water 301 treated with DEPC was applied, the lid was put on the tube, the tube was set for 10 minutes, and centrifuged at 11,500 rpm for 10 minutes.
[実施例 5 ] 全 RNAの DNase処理 [Example 5] DNase treatment of total RNA
T細胞から調製した全 RNAから DNAを除くため、 DNase処理を行った。反応は 2 ユニットの DNase (二ツボンジーン社) および 50ユニットの RNaseインヒビ夕一DNase treatment was performed to remove DNA from total RNA prepared from T cells. Reaction 2 Unit DNase (Nitsubon Gene) and 50 units RNase inhibitor Yuichi
(フアルマシア社) を含む 100 1の lXDNaseバッファ一 (二ツボンジーン社) 中で行った。これを 37°C15分間ィンキュペートした後、等量の PCI (フエノール: クロ口ホルム:イソアミルアルコール =25:24:1)を加え、 ボルテックスした。 12 000 rpmで室温、 10分間遠心し、 上層 (水層) を新しい 1.5 mlチューブに移した。 1/10量の 3M酢酸ナトリウム(pH 5.2)を加え、 2.5倍量の 100%エタノールおよび エタ沈メイト 1 lを加えて、 転倒混和させた。 - 20°Cで 15分間静置させた後、 1 2000 rpmで 4°C、 15分間遠心し、 上清を除去し、 70%エタノールを加えた。 沈殿 がはがれる程度にタッピングした後、 上清をきれいに除去した。 3分間乾燥させ、 10〜20 1の DDW(DNaseおよび RNase不含) に溶解させた。 濃度を測定し、 使用 まで- 80°Cに保存した。 (Pharmacia) in 100 l lXDNase buffer (Futan Gene). After incubating this at 37 ° C for 15 minutes, an equal volume of PCI (phenol: black form: isoamyl alcohol = 25: 24: 1) was added and vortexed. The mixture was centrifuged at 12,000 rpm at room temperature for 10 minutes, and the upper layer (aqueous layer) was transferred to a new 1.5 ml tube. One-tenth volume of 3M sodium acetate (pH 5.2) was added, and 2.5 volumes of 100% ethanol and 1 liter of eta-precipitated mate were added and mixed by inversion. After leaving at −20 ° C. for 15 minutes, the mixture was centrifuged at 12,000 rpm at 4 ° C. for 15 minutes, the supernatant was removed, and 70% ethanol was added. After tapping to the extent that the precipitate was detached, the supernatant was removed cleanly. Dried for 3 minutes and dissolved in 10-201 DDW (no DNase and RNase). The concentration was measured and stored at -80 ° C until use.
[実施例 6] T細胞から調製した全 RNAを用いたディファレンシャルディスプ レイ (DD) 解析 [Example 6] Differential display (DD) analysis using total RNA prepared from T cells
T細胞から調製した全 RNAを用いた蛍光ディファレンシャルディスプレイ (F1 uorescent Differential Display, 「DD」 と略記する) 解析は文献 (T. Itoら, 19 94, FEBS Lett. 351: 231-236)に記載の方法に準じて行った。 T細胞から調製し た全 RNAを逆転写し、 cDNAを得た。 第一次 DD-PCR反応用には 3種のアンカープ ライマ一の各々について全 RNAの各 0.2 gを用いて cDNAを調製した。第二次 DD - PCR反応用には、 3種のアンカ一プライマ一の各々について RNA 0.4 zgを用い て cDNAを調製した。 いずれの cDNAも、 0.4ng/ l RNA相当の最終濃度に希釈し、 実験に用いた。 1反応あたり 1 ng RNA相当の cDNAを用いて DD-PCR反応を行った。 反応液の組成は表 1の通りである。 Fluorescence differential display (F1 uorescent Differential Display, abbreviated as “DD”) using total RNA prepared from T cells is described in the literature (T. Ito et al., 1994, FEBS Lett. 351: 231–236). Performed according to the method. Total RNA prepared from T cells was reverse transcribed to obtain cDNA. For the primary DD-PCR reaction, cDNA was prepared using 0.2 g of total RNA for each of the three anchor primers. For the secondary DD-PCR reaction, cDNA was prepared using 0.4 zg of RNA for each of the three anchor primers. All cDNAs were diluted to a final concentration equivalent to 0.4 ng / l RNA and used for experiments. A DD-PCR reaction was performed using cDNA equivalent to 1 ng RNA per reaction. Table 1 shows the composition of the reaction solution.
表 1 cDNA(0.4ng/^ 1 RNA相当) 2.5 1 Table 1 cDNA (equivalent to 0.4 ng / ^ 1 RNA) 2.5 1
任意プライマー (2/zM) .5^1 lOXAmpliTaq PCRバッファー 1.0 x 1 Optional primer (2 / zM) .5 ^ 1 lOXAmpliTaq PCR buffer 1.0 x 1
2.5mM dNTP 0.8 1 2.5mM dNTP 0.8 1
50 M アンカ一プライマ一 0.1 1 50 M anchor per primer 0.1 1
(GT15A, GT15C, GT15G) (GT15A, GT15C, GT15G)
Gene Taq (5U/ 1) 0.05 1 Gene Taq (5U / 1) 0.05 1
Am liTaq (5U//z 1) 0.05 1 Am liTaq (5U // z 1) 0.05 1
dH,0 3.0 1 dH, 0 3.0 1
10.0M 10.0M
PCRの反応条件は、 「95°C3分、 40°C5分、 72°C5分」 を 1サイクル、 続いて、 「9 4°C15秒、 40°C2分、 72°C1分」を 30サイクルの後、 72°C5分、その後連続的に 4T: にした。 使用したプライマー対はアンカ一プライマーである GT15A (配列番号: 2)、 GT15C (配列番号: 3)、 および GT15G (配列番号: 4) に対して任意プライ マーをそれぞれ AG 1〜110、 AG 111〜199、 および AG 200〜287を組み合わせ、 計 287組の反応をおこなった。 なお、 任意プライマーとしては GC含量 50%の 10ヌ クレオチドからなるオリゴマ一を設計し、 合成して用いた。 The PCR reaction conditions were as follows: 1 cycle of 95 ° C for 3 minutes, 40 ° C for 5 minutes, 72 ° C for 5 minutes, followed by 30 cycles of 94 ° C for 15 seconds, 40 ° C for 2 minutes, and 72 ° C for 1 minute. Thereafter, the temperature was kept at 72 ° C for 5 minutes, and then continuously 4T :. The primer pairs used were primers AG1 to 110 and AG111 to GT15A (SEQ ID NO: 2), GT15C (SEQ ID NO: 3), and GT15G (SEQ ID NO: 4), which are anchor primers, respectively. A total of 287 reactions were performed by combining 199 and AG 200-287. As an optional primer, an oligomer composed of 10 nucleotides having a GC content of 50% was designed, synthesized, and used.
ゲル電気泳動は、 6%変性ポリアクリルアミドゲルを作製し、 2.5 1 の試料を アプライし、 40Wで 210分間泳動した。 その後、 日立製蛍光イメージアナライザ -FMBI0 IIを用いてゲル板をスキャンし、 蛍光検出によって泳動画像を得た。 For gel electrophoresis, a 6% denaturing polyacrylamide gel was prepared, 2.5 1 samples were applied, and electrophoresed at 40 W for 210 minutes. Thereafter, the gel plate was scanned using Hitachi Fluorescence Image Analyzer -FMBI0 II, and electrophoretic images were obtained by fluorescence detection.
[実施例 7 ] D D解析で切り出したバンドの増幅と配列決定 [Example 7] Amplification and sequencing of band cut out by DD analysis
多数の任意プライマーを用いて 2回の DD解析を行った。 花粉飛散前後または 患者と健常者のグループの間で差のあるバンドを選択し、 2回の実験で再現性の あるバンドをゲルから切り出した。 Two DD analyzes were performed using a number of arbitrary primers. Bands that differed before and after pollen dispersal or between the patient and healthy groups were selected and reproducible bands were excised from the gel in two experiments.
切り出したバンドの 1つ (「787」 と称する) についてさらに解析を進めた。 「7 87」 のバンドはアンカ一プライマーとして GT15G (配列番号: 4) を、 任意ブラ イマ一として AG274 (TGACCTAGCT/配列番号: 5 ) を用いた D D解析によって見 出され、 「787」 の発現は 8人中 4人で飛散前のほうが飛散後よりも発現が強かつ た。 Further analysis was performed on one of the cut-out bands (referred to as "787"). The “787” band is GT15G (SEQ ID NO: 4) as an anchor primer, DD analysis using AG274 (TGACCTAGCT / SEQ ID NO: 5) as an imaginary animal revealed that the expression of “787” was stronger in 4 out of 8 subjects before dispersal than after dispersal.
「787」 の塩基配列を決定するために、 「787」 のバンドを含むゲルを切り出し、 TE溶液に保存し 60°C、 10分加温して DNAをゲルから溶出させた。 この TE溶液を 铸型として DD- PCRと同条件で PCRを行い、約 290bpの DNA断片を増幅した。アン カープライマ一として、 GT15Gを、 任意プライマーとして AG274を用いた。 増幅 した DNA断片をプラスミドベクター pCR2. l (Invi t rogen社)にてクローニングし、 約 290bpの DNA断片を保持するプラスミド p787-5を得た。プラスミド DNAを用い て常法に従い DNA断片の塩基配列を決定した。 To determine the nucleotide sequence of “787”, a gel containing the band of “787” was cut out, stored in a TE solution, and heated at 60 ° C. for 10 minutes to elute DNA from the gel. Using this TE solution as type II, PCR was performed under the same conditions as DD-PCR, and a DNA fragment of about 290 bp was amplified. GT15G was used as the anchor primer, and AG274 was used as the optional primer. The amplified DNA fragment was cloned into a plasmid vector pCR2.l (Invitrogen) to obtain a plasmid p787-5 having a DNA fragment of about 290 bp. Using the plasmid DNA, the nucleotide sequence of the DNA fragment was determined according to a conventional method.
[実施例 8 ] ABI-7700による定量 [Example 8] Quantification by ABI-7700
ABI-PRISM7700を用いた TaqMan法により、 「787」 の発現量の定量を行った。 こ の方法は PCR増幅された DNA鎖を蛍光色素を用いてリアルタィムに定量検出する システムである。定量のために新たに 1998年春にスギ花粉飛散前 ·後の血液試料 を 22名のポランティアから採取し、 T細胞を調製して全 RNAを抽出した。 計 44 種の全 RNA試料を用いて目的の遺伝子の発現量を定量した。 The expression amount of "787" was quantified by the TaqMan method using ABI-PRISM7700. This method is a system for real-time quantitative detection of PCR-amplified DNA strands using fluorescent dyes. For the purpose of quantification, blood samples before and after cedar pollen scattering were newly collected from 22 volunteers in the spring of 1998, T cells were prepared, and total RNA was extracted. The expression level of the target gene was quantified using a total of 44 total RNA samples.
実施例 1と同様にしてスギ花粉、 ヒノキ花粉、 ャケヒヨウダニ、 およびコナヒ ヨウダニの特異的 IgE値、 並びに総 IgE値を測定した (表 2 )。 In the same manner as in Example 1, specific IgE values and total IgE values of cedar pollen, cypress pollen, Dermatophagoides farinae, and Dermatophagoides farinae were measured (Table 2).
表 2 Table 2
特異的 IqE値 Specific IqE value
特異的 lgE (UA/ml) Specific lgE (UA / ml)
被^者 血液採取時期 (UA/ml) Subject Blood sampling time (UA / ml)
A 飛敝前 42.7 5.46 1 .09 <0.34 300 飛散後 83.2 7.85 1 .28 <0.34 460A Before flying 42.7 5.46 1 .09 <0.34 300 After flying 83.2 7.85 1.28 <0.34 460
B 飛敢前 31 .9 4.33 72.5 52.6 770 飛散後 36.8 3.56 78.8 47.9 840B Before flying 31.9 4.33 72.5 52.6 770 After flying 36.8 3.56 78.8 47.9 840
C 飛 K前 1 5.2 1.5 68.7 66.1 450 飛 後 20.3 1.32 64.3 49.7 330Before Flying K 1 5.2 1.5 68.7 66.1 450 After Flying 20.3 1.32 64.3 49.7 330
D 飛敗前 13.9 1 .1 1 39.3 63.4 200 飛散後 1 8.4 0.81 31.9 54.7 1 20D Before losing 13.9 1.1 .1 39.3 63.4 200 After splattering 1 8.4 0.81 31.9 54.7 1 20
E 飛敏前 5.25 0.48 <0.34 0.34 30 飛散後 8.33 0.46 <0.34 <0.34 38E Before flying 5.25 0.48 <0.34 0.34 30 After flying 8.33 0.46 <0.34 <0.34 38
F 飛敵前 6.64 0.39 <0.34 0.34 26 飛 後 8.21 0.47 <0.34 <0.34 27F Before enemy 6.64 0.39 <0.34 0.34 26 After flight 8.21 0.47 <0.34 <0.34 27
G 飛敝前 1 .29 0.34 <0.34 <0.34 26 飛 後 4.02 0.34 <0.34 0.34 30G before flying 1.29 0.34 <0.34 <0.34 26 after flying 4.02 0.34 <0.34 0.34 30
H 飛敗前 1.99 0.41 26.5 36.1 220 飛散後 3.65 0.53 23.2 29.5 1 50H Before losing 1.99 0.41 26.5 36.1 220 After splattering 3.65 0.53 23.2 29.5 1 50
1 飛敵 0.93 <0.34 54.6 51.7 1 30 1 Flying enemy 0.93 <0.34 54.6 51.7 1 30
3.51 <0.34 43.3 39.9 1 00 3.51 <0.34 43.3 39.9 1 00
J 飛 前 3.55 0.68 0.55 <0.34 96 飛 tt後 2.77 0.42 0.39 <0.34 78 飛敗前 1.2 0.34 <0.34 <0.34 96 飛敗後 2.72 <0.34 <0.34 0.34 110 し 飛散前 0.95 0.39 1.3 1.8 13 飛 Ittft 2.5 0.51 1.45 2.38 J before 3.55 0.68 0.55 <0.34 96 after tt 2.77 0.42 0.39 <0.34 78 before losing 1.2 0.34 <0.34 <0.34 96 after losing 2.72 <0.34 <0.34 0.34 110 then before scatter 0.95 0.39 1.3 1.8 13 before Ittft 2.5 0.51 1.45 2.38
飛敝前 0.34 <0.34 <0.34 <0.34 36 飛》後 2.08 <0.34 0.34 0.34 43 Before flying 0.34 <0.34 <0.34 <0.34 36 Flying> After 2.08 <0.34 0.34 0.34 43
N 飛 0.42 0.34 <0.34 0.34 22 飛散後 1.67 0.34 0.45 0.34 73N fly 0.42 0.34 <0.34 0.34 22 After fly 1.67 0.34 0.45 0.34 73
0 飛 ttffi 0.54 <0.34 28.1 27.2 180 飛 tt後 1.42 0.34 27.2 26.3 1600 Fly ttffi 0.54 <0.34 28.1 27.2 180 Fly tt 1.42 0.34 27.2 26.3 160
P 飛》前 0.38 0,34 5.08 3.65 280 飛 後 0.68 0.34 4.49 3.02 240Before Flying 0.38 0,34 5.08 3.65 280 After Flying 0.68 0.34 4.49 3.02 240
Q 飛》前 0.34 0.34 <0.34 0.34 5.0 飛 tt接 0.34 0.34 <0.34 <0.34 5.0 飛 ttu 0.34 0.34 0.34 <0.34 53 飛 IK後 <0.34 0.34 <0.34 0.34 62Before Q fly 0.34 0.34 <0.34 0.34 5.0 Fly tt contact 0.34 0.34 <0.34 <0.34 5.0 Fly ttu 0.34 0.34 0.34 <0.34 53 Fly After IK <0.34 0.34 <0.34 0.34 62
S 飛 κ前 0.34 0.34 <0.34 <0.34 420 0.34 0.34 <0.34 <0.34 420
<0.34 0.34 <0.34 0.34 370 <0.34 0.34 <0.34 0.34 370
T 飛 tt前 0.34 0.34 <0.34 <0.34 82 飛敵後 0.34 0.34 0.34 <0.34 62 u 飛 前 0.34 0.34 0.34 <0.34 18 飛散後 <0.34 0.34 0.34 0.34 16Before T fly tt 0.34 0.34 <0.34 <0.34 82 After fly 0.34 0.34 0.34 <0.34 62 u Before fly 0.34 0.34 0.34 <0.34 18 After fly <0.34 0.34 0.34 0.34 16
V 飛 前 <0.34 0.34 0.79 0.81 180 飛 後 0.34 0.34 0.78 0.9 160 実施例 7において決定した DDバンドの塩基配列を基にしてプライマー 787-5' (AGCTTCTGGACAGCCCAGTC/配列番号: 6)、 787-3' (GGAGTTAGCCAGGCAGCAAAZ配列 番号: 7)、 および TaqManプローブ 787- 13SEQ (TGGTGATGGCTGGAGGGAGTGATTGZ配 列番号: 8) を設計、 合成し定量反応に用いた。 TaqManプローブ 787- 13SEQは、 5 端を FAM(6-carboxyf luorescein)で、 3 端を TAMRA(6 - carboxy- tetramethy 卜 rhodamine)で蛍光標識して用いた。 铸型には 44種の全 RNAからポリ T(12〜18 マー)をプライマーとして逆転写した cDNAを用いた。 コピー数を算出する標準曲 線のために実施例 7で得たプラスミド p787- 5 の段階希釈液を铸型として反応を 行った。 PCR増幅のモニタリングのための反応液の組成は表 3に示した。 また、 試料中の cDNA濃度の差を補正するため、 β -ァクチン ( 3-actin) 遺伝子につい て同様の定量解析を行い、 それら遺伝子のコピー数を基に補正して、 目的遺伝子 (787) のコピー数を算出した。 Before flying <0.34 0.34 0.79 0.81 180 After flying 0.34 0.34 0.78 0.9 160 Based on the nucleotide sequence of the DD band determined in Example 7, primers 787-5 ′ (AGCTTCTGGACAGCCCAGTC / SEQ ID NO: 6), 787-3 ′ (GGAGTTAGCCAGGCAGCAAAZ sequence ID: 7), and TaqMan probe 787-13SEQ (TGGTGATGGCTGGAGGGAGTGATTGZ Column number: 8) was designed, synthesized, and used for quantitative reactions. The TaqMan probe 787-13SEQ was used by fluorescently labeling the 5 end with FAM (6-carboxyfluorescein) and the 3 end with TAMRA (6-carboxy-tetramethytri rhodamine). For type II, reverse transcribed cDNA from 44 total RNAs using poly T (12 to 18 mer) as a primer was used. For the standard curve for calculating the copy number, a serial dilution of the plasmid p787-5 obtained in Example 7 was used as a type II reaction. Table 3 shows the composition of the reaction solution for monitoring PCR amplification. In addition, in order to correct the difference in cDNA concentration in the sample, the same quantitative analysis was performed on the β-actin (3-actin) gene, and correction was performed based on the copy number of those genes, and the target gene (787) was corrected. The number of copies was calculated.
表 3 Table 3
ABI -PRISM 7700の反応組成 ( 1ゥエルあたりの反応量) 滅菌蒸留水 25.66 ( L) Reaction composition of ABI-PRISM 7700 (reaction volume per 1 liter) Sterile distilled water 25.66 (L)
10x TaqMan ノ ソファー A 5 10x TaqMan Roof A5
25mM MgCl2 7 25mM MgCl 2 7
dATP(lOmM) 1.2 dATP (lOmM) 1.2
dCTP(lOmM) 1.2 dCTP (lOmM) 1.2
dGTP(lOmM) 1.2 dGTP (lOmM) 1.2
dUTP(lOmM) 1.2 dUTP (lOmM) 1.2
Forward Primer (100 μΜ) 0.15 Forward Primer (100 μΜ) 0.15
Reverse Primer (lOO ^M) 0.15 Reverse Primer (lOO ^ M) 0.15
787 TaqMan プロ一ブ(6.7 M) 1.49 787 TaqMan probe (6.7 M) 1.49
AmpliTaq Gold (W fil) 0.25 AmpErase UNG (W D 0.5 AmpliTaq Gold (W fil) 0.25 AmpErase UNG (WD 0.5
テンプレ一ト溶液 5 Template solution 5
50 50
/3-ァクチンのコピー数で補正した各試料中の 「787」 の存在数 (コピー数) を 表 4に示す。補正は全試料における -ァクチンの平均コピ一を求め、それを 1と したときの各試料中の /3-ァクチンの相対値で各試料中の 「787」 のコピー数を除 した。 Table 4 shows the number (copy number) of “787” in each sample corrected for the copy number of / 3-actin. For the correction, the average copy of -actin in all samples was determined, and the copy number of "787" in each sample was divided by the relative value of / 3-actin in each sample when it was set to 1.
表 4 Table 4
ABI7700による定量信 (copy/ngRNA) beta actin補正 data 被験者 血液採取時期 バンド ID Quantitative signal by ABI7700 (copy / ngRNA) beta actin correction data Subject Blood collection time Band ID
787 787
A 飛敗前 147 A Before losing 147
飛散後 119 After flying 119
B 飛散前 970 B before scattering 970
飛散後 98 After scattering 98
C 飛敏前 165 C Hitoumae 165
飛散後 81 After scattering 81
D 飛敗前 433 D Before defeat 433
飛敗後 66 After defeat 66
E 飛敏前 149 E Hitoumae 149
飛散後 160 After dispersal 160
F 飛敗前 195 F Before Defeat 195
飛敗後 493 After defeat 493
G 飛散前 130 G before scattering 130
飛散後 72 After splashing 72
H 飛 κ前 387 H flying κ front 387
飛敗後 60 After defeat 60
1 飛敗前 293 1 Before the Defeat 293
飛敏後 286 After 286
J 飛效前 444 J Tobimae 444
飛敗後 155 After defeat 155
K 飛散前 128 K before scattering 128
飛散後 118 し 飛敗前 612 After flying 118 and before losing 612
飛敏後 207 After speed 207
M 飛敗前 191 M Before Defeat 191
飛散後 82 After splash 82
N 飛敗前 190 N Before defeat 190
飛散後 84 After splashing 84
0 飛敗前 186 0 Before defeat 186
飛敗後 71 After defeat 71
P 飛敗前 134 P Before Defeat 134
飛敏後 177 After speed 177
Q 飛敗前 369 Q Before losing 369
飛敗後 219 After defeat 219
R 飛 ¾前 95 R Flying before 95
飛敗後 13 After defeat 13
S 飛散前 123 S before scattering 123
飛散後 84 After splashing 84
T 飛敏前 181 T Hitoshi Mae 181
飛敗後 92 u 飛敗前 212 After defeat 92 u Before defeat 212
飛敗後 128 After defeat 128
V 飛敗前 191 V Before Defeat 191
飛散後 88 この値を用いて対応のある t-検定を行った。 検定には StatViewソフトウェア (Abacuus Concepts, Inc.) を用いた。 その結果、 スギ花粉飛散前後で群分けす ると、 「787」 の発現は飛散前グループにおいて飛散後グループよりも有意に高い (P値 =0.0098) ことが示された (図 2)。 花粉飛散前グループおよび飛散後ダル ープにおける 「787」 の発現量は、 それぞれ 269.2 ±205.0 および 134·2±101.4 コピー Zng RNA (平均土標準偏差) であった。 After dispersal 88 Using this value, a paired t-test was performed. StatView software (Abacuus Concepts, Inc.) was used for the assay. The results showed that the expression of “787” was significantly higher in the pre-scatter group than in the post-scatter group (P value = 0.0098) when divided into groups before and after cedar pollen scattering (Fig. 2). The expression level of “787” in the group before pollen dispersal and the drop after dispersal was 269.2 ± 205.0 and 134.2 ± 101.4 copies of Zng RNA (mean soil standard deviation), respectively.
[実施例 9] 「787」 のクロ一ニングと塩基配列の解析 [Example 9] Cloning of "787" and analysis of nucleotide sequence
「787」 をクロ一ニングするため、 Yeast Two Hybridの Leukemia cDNAライブ ラリー (CLONTECH社) を铸型として、 DDバンド配列より作成した特異的プライマ — 787- 12 (CCAGGCTGGATTCTTGGTTTCCTAZ配列番号: 9) とベクター (GAL4 Activ ation Domain Cloning vector) プライマ一 (CTATTCGATGATGAAGATACCCCACCAAACC 配列番号: 10) とを用いて、 PCRによるスクリーニングを行った。 PCRは、 9 4°C 30秒の加温後、 「94°C5秒、 72°C4分」 を 5サイクル、 「94°C5秒、 70°C4分」 を 5サイクル、 「94°C5秒、 68^4分」 を 25サイクル行った。 その結果、 約 l.lkb の増幅産物が得られた。 To clone “787”, a specific primer prepared from DD band sequence using Yeast Two Hybrid Leukemia cDNA Library (CLONTECH) as type II — 787-12 (CCAGGCTGGATTCTTGGTTTCCTAZ SEQ ID NO: 9) and vector ( Screening by PCR was carried out using GAL4 Activation Domain Cloning vector) primer (CTATTCGATGATGAAGATACCCCACCAAACC SEQ ID NO: 10). After heating at 94 ° C for 30 seconds, 5 cycles of `` 94 ° C for 5 seconds, 72 ° C for 4 minutes '', 5 cycles of `` 94 ° C for 5 seconds, 70 ° C for 4 minutes '', `` 94 ° C for 5 seconds, 68 ^ 4 minutes "for 25 cycles. As a result, an amplification product of about l.lkb was obtained.
さらに、 決定した 「787」 の配列中にプライマ一を設計し、 Marathon cDNA Amp lification Kit (CLONTECH社) を用いて更に上流の配列決定を試みた。 Human Le ukemia K-562細胞株の mRNA (CLONTECH社) を用いて、 Marathon用 cDNAを作製 し、 铸型とした。 既知の配列領域中に設計したプライマ一 787_M1U (TTCACGCGGT CTCTTGTAMGTTZ配列番号: 1 1) とキットに添付のアダプタープライマ一を用い て PCR反応を行った。 PCRの反応条件は、 94°C 30秒の加温後、 「94 5秒、 70 4 分」 を 5サイクル、 「94°C5秒、 68で 4分」 を 5サイクル、 「94°C5秒、 66 4分」 を 25サイクル行った。 その結果、 約 1.3kbの増幅産物が得られた。 この DNA配列 を決定したところ、 これまでに決定した 「787」 の配列を含む 1305bpの配列が得 られた。 この配列を配列番号: 1に示す。 Furthermore, a primer was designed in the determined "787" sequence, and further upstream sequencing was attempted using a Marathon cDNA Amplification Kit (CLONTECH). Using cDNA from Human Leukemia K-562 cell line (CLONTECH), a cDNA for Marathon was prepared and type II. PCR was carried out using the primer 787_M1U (TTCACGCGGT CTCTTGTAMGTTZ SEQ ID NO: 11) designed in a known sequence region and the adapter primer attached to the kit. The PCR reaction conditions were as follows: after heating at 94 ° C for 30 seconds, 5 cycles of `` 945 seconds, 704 minutes '', 5 cycles of `` 94 ° C for 5 seconds, 68 minutes for 4 minutes, '' `` 94 ° C for 5 seconds, 66 4 minutes "for 25 cycles. As a result, an amplification product of about 1.3 kb was obtained. When this DNA sequence was determined, a 1305 bp sequence including the previously determined “787” sequence was obtained. This sequence is shown in SEQ ID NO: 1.
[実施例 10] 5' RACE法による解析 1 Marathon-Ready cDNA (CLONTECH社) Bone Marrow を铸型として、 5' RACE解析 を行つた。第一次 5' RACE-PCR反応用には添付の API Primer (CCATCCTAATACGACTC ACTATAGGGCZ配列番号: 12)と 「787」 内に特異的な 787- Rl Primer (ACTGATTGA GTCTATCTCTGATGノ配列番号: 13 )を用いて PCR反応を行った。 第二次 (nested) 5' RACE- PCR反応用には、 添付の AP2 Primer (ACTCACTATAGGGCTCGAGCGGCZ配列番 号: 14)と 「787」 内に特異的な 787-2R Primer (GCTCCCTAGTCTCTCACCTCCTノ配 列番号: 15)を用いて PCR反応を行った。 PCRの反応条件は、 第一次が、 「94°C 3分」 を 1サイクル、 続いて、 「94°C30秒、 60°C30秒、 72 °C 3分」 を 35 サイクルの後 「72°C5分」 を 1サイクル、 その後連続的に 4°Cにした。 第二次 は、 「94°C3分」 を 1サイクル、 続いて、 「94°C30秒、 60 °C 30秒、 72 °C 2 分」 を 25サイクルの後 「72°C5分」 を 1サイクル、 その後連続的に 4°Cにし た。 両反応とも、 Taq酵素として TaKaRa Ex Taq (TaKaRa社)を使用し、 添付の反 応試薬から添付のマニュアルに従って、 反応液を調製した。 [Example 10] Analysis by 5 'RACE method 1 5 'RACE analysis was performed using Marathon-Ready cDNA (CLONTECH) Bone Marrow as type II. For the primary 5 'RACE-PCR reaction, PCR was performed using the attached API Primer (CCATCCTAATACGACTC ACTATAGGGCZ SEQ ID NO: 12) and the 787-specific 787-Rl Primer (ACTGATTGA GTCTATCTCTGATG NO SEQ ID NO: 13). The reaction was performed. For the second (nested) 5 'RACE-PCR reaction, the attached AP2 Primer (ACTCACTATAGGGCTCGAGCGGCZ sequence number: 14) and the 787-specific 787-2R Primer (GCTCCCTAGTCTCTCTCACCTCCT sequence number: 15) Was used to perform a PCR reaction. The reaction conditions for the PCR were as follows: primary: one cycle of `` 94 ° C for 3 minutes '', followed by `` 94 ° C for 30 seconds, 60 ° C for 30 seconds, 72 ° C for 3 minutes '' after 35 cycles of `` 72 ° C One cycle of “C5 min” was followed by continuous 4 ° C. Second, one cycle of `` 94 ° C for 3 minutes '', followed by one cycle of `` 94 ° C for 30 seconds, 60 ° C for 30 seconds, 72 ° C for 2 minutes '' followed by one cycle of `` 72 ° C for 5 minutes '' Thereafter, the temperature was continuously raised to 4 ° C. In both reactions, TaKaRa Ex Taq (TaKaRa) was used as a Taq enzyme, and reaction solutions were prepared from the attached reaction reagents according to the attached manual.
ゲル電気泳動は、 1.5%ァガロースゲルを作製し、 5/X 1の試料をアプライし、 1 00V定電圧で 30分間泳動した。その後、 UVトランスイルミネー夕によって泳動画 像を得た。 For gel electrophoresis, a 1.5% agarose gel was prepared, 5 / X1 sample was applied, and electrophoresis was performed at 100 V constant voltage for 30 minutes. Thereafter, electrophoretic images were obtained by UV transillumination.
[実施例 1 1] 5' RACE解析で切り出したバンドの回収と配列決定 1 [Example 1 1] Collection and sequencing of band excised by 5 'RACE analysis 1
5' RACE解析で得られたバンドの塩基配列を決定するため、 増幅した DNA断片を ゲルから切り出しプラスミドベクタ一 PCR2.1 (Invitrogen社)にてクローニング し、 約 600bpの DNA断片を保持するプラスミドを得た。 プラスミド DNAを用いて 常法に従い DNA断片の塩基配列を決定した。 その結果、 更に上流の配列約 200bp を得ることができた。 配列を配列番号: 16に示す。 In order to determine the nucleotide sequence of the band obtained by 5 'RACE analysis, the amplified DNA fragment was excised from the gel, cloned with plasmid vector PCR2.1 (Invitrogen), and a plasmid containing a DNA fragment of about 600 bp was cloned. Obtained. Using a plasmid DNA, the nucleotide sequence of the DNA fragment was determined according to a conventional method. As a result, about 200 bp of the upstream sequence could be obtained. The sequence is shown in SEQ ID NO: 16.
[実施例 12] 5' RACE法による解析 2 [Example 12] Analysis by 5 'RACE method 2
Marathon-Ready cDNA (CLONTECH社) Bone Marrow を铸型として、 5' RACE解析 を行った。第一次 5' RACE- PCR反応用には添付の API Primer (CCATCCTAATACGACTC ACTATAGGGCZ配列番号: 12)と 「787」 内に特異的な 787- yRl Primer (AGCCCTCT GAATCTCCACTCTCTAZ配列番号: 17) を用いて PCR反応を行った。 第二次 (nest ed) 5' RACE- PCR反応用には、 添付の AP2 Primer (ACTCACTATAGGGCTCGAGCGGC/S2 列番号: 14)と 「787」 内に特異的な 787-yR2 Primer (TCCCTTACCAGATACTACCTCG TG/配列番号: 18)を用いて PCR反応を行った。 787- yRl Primer及び 787-yR2 Primerは、 「5' RACE解析で切り出したバンドの回収と配列決定 1」 から得られ た塩基配列を基に設計したものである。 PCRの反応条件は、 第一次が、 「94°C3分」 を 1サイクル、 続いて、 「94°C30秒、 6 CTC30秒、 72 °C 1分」 を 35サイク ルの後「72°C5分」 を 1サイクル、その後連続的に 4°Cにした。第二次は、 「94°C 3分」 を 1サイクル、 続いて、 「94°C30秒、 60°C30秒、 72°C1分」 を 20 サイクルの後 「72°C5分」 を 1サイクル、 その後連続的に 4°Cにした。 両反応 とも、 Taq酵素として TaKaRa Ex Taq (TaKaRa社)を使用し、 添付の反応試薬から 添付のマニュアルに従って、 反応液を調製した。 5 'RACE analysis was performed using Marathon-Ready cDNA (CLONTECH) Bone Marrow as type II. For the primary 5 'RACE-PCR reaction, the attached API Primer (CCATCCTAATACGACTC ACTATAGGGCZ SEQ ID NO: 12) and 787-yRl Primer (AGCCCTCT A PCR reaction was performed using GAATCTCCACTCTCTAZ SEQ ID NO: 17). For the second (nested) 5 'RACE-PCR reaction, the attached AP2 Primer (ACTCACTATAGGGCTCGAGCGGC / S2 column number: 14) and the 787-specific 787-yR2 Primer (TCCCTTACCAGATACTACCTCG TG / SEQ ID NO: A PCR reaction was performed using (18). The 787-yRl Primer and 787-yR2 Primer were designed based on the nucleotide sequence obtained from "Recovery of band excised by 5 'RACE analysis and sequencing 1". The reaction conditions for the PCR were as follows: primary: one cycle of `` 94 ° C for 3 minutes '' followed by `` 94 ° C for 30 seconds, 6 CTC for 30 seconds, 72 ° C for 1 minute '' after 35 cycles of `` 72 ° C Min) for one cycle and then continuously at 4 ° C. The second is one cycle of `` 94 ° C for 3 minutes '' followed by one cycle of `` 94 ° C for 30 seconds, 60 ° C for 30 seconds and 72 ° C for one minute '' followed by one cycle of `` 72 ° C for 5 minutes '' Thereafter, the temperature was continuously raised to 4 ° C. In both reactions, TaKaRa Ex Taq (TaKaRa) was used as a Taq enzyme, and reaction solutions were prepared from the attached reaction reagents according to the attached manual.
ゲル電気泳動は、 1.2%ァガロースゲルを作製し、 5^ 1の試料をアプライし、 1 00V定電圧で 30分間泳動した。その後、 UVトランスイルミネー夕によって泳動画 像を得た。 For gel electrophoresis, a 1.2% agarose gel was prepared, 5 ^ 1 sample was applied, and electrophoresis was performed at 100 V constant voltage for 30 minutes. Thereafter, electrophoretic images were obtained by UV transillumination.
[実施例 13] 5' RACE解析で切り出したバンドの回収と配列決定 2 [Example 13] Collection and sequencing of band excised by 5 'RACE analysis 2
5' RACE解析で得られたバンドの塩基配列を決定するため、 増幅した DNA断片を ゲルから切り出しプラスミドベクター PCR2.1 (Invitrogen 社)にてクローニング し、 約 1.2 kbpの DNA断片を保持するプラスミドを得た。 プラスミド DNAを用い て常法に従い DNA断片の塩基配列を決定した。 その結果、 更に上流の配列約 1 kb を得ることができた。 配列を配列番号: 19に示す。 これらの知見を総合し、 最終的に 「787」 の塩基配列は 2565bpとなった。 「787」 の塩基配列を配列番号: 20に示した。 産業上の利用の可能性 In order to determine the nucleotide sequence of the band obtained by 5 'RACE analysis, the amplified DNA fragment was excised from the gel, cloned with the plasmid vector PCR2.1 (Invitrogen), and the plasmid containing the approximately 1.2 kbp DNA fragment was cloned. Obtained. Using the plasmid DNA, the nucleotide sequence of the DNA fragment was determined according to a conventional method. As a result, a further upstream sequence of about 1 kb was obtained. The sequence is shown in SEQ ID NO: 19. Based on these findings, the nucleotide sequence of “787” was finally 2565 bp. The nucleotide sequence of "787" is shown in SEQ ID NO: 20. Industrial applicability
本発明により、 スギ花粉のような抗原刺激に対する T細胞の応答の指標とする ことができる新規遺伝子が提供された。 本発明の遺伝子の発現を指標に、 花粉抗 原に対する T細胞の応答の有無に関する検査、 あるいは抗原刺激に対する T細胞 の応答を抑制する治療薬候補化合物のスクリーニングを行うことが可能となった。 According to the present invention, it is used as an indicator of the response of T cells to antigen stimulation such as cedar pollen. New genes have been provided. Using the expression of the gene of the present invention as an index, it has become possible to conduct a test for the presence or absence of a response of T cells to pollen antigen, or to screen a candidate therapeutic compound for suppressing the response of T cells to antigen stimulation.
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| BARUJ BENACERRAF ET AL.: "Histocompatibility-linked immune response genes", SCIENCE, vol. 175, 1972, pages 273 - 279, XP002930725 * |
| KAZUSHI HONDA: "Sugi kafunshou no meneki identeki kaiseki", ALLERGY NO RINSHOU, vol. 89, 1988, pages 111 - 115, XP002945874 * |
| KENICHI YAMAMURA ET AL.: "Functional expression of a micro-injected Ed(alpha) gene in C57BL/6 transgenic mice", NATURE, vol. 316, 1985, pages 67 - 69, XP002930724 * |
| SHOU MATSUSHITA: "Allergy shikkan no identeki koso", RINSHOU MENEKI, vol. 20, no. SUPPL. 13, 1988, pages 68 - 76, XP002945875 * |
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| WO2003083139A1 (en) * | 2002-04-03 | 2003-10-09 | Genox Research, Inc. | Method of examining allergic disease |
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