WO2000065046A1 - Pollinosis-associated gene 373 - Google Patents
Pollinosis-associated gene 373 Download PDFInfo
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- WO2000065046A1 WO2000065046A1 PCT/JP2000/002730 JP0002730W WO0065046A1 WO 2000065046 A1 WO2000065046 A1 WO 2000065046A1 JP 0002730 W JP0002730 W JP 0002730W WO 0065046 A1 WO0065046 A1 WO 0065046A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
- C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
- A61P37/08—Antiallergic agents
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/136—Screening for pharmacological compounds
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- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
Definitions
- the present invention relates to a gene associated with an allergic disease, in particular, hay fever, a method for testing an allergic disease using an expression of the gene as an index, and a method for screening a candidate therapeutic drug for an allergic disease.
- Allergic diseases including hay fever, are considered multifactorial diseases. These diseases are caused by the interaction of the expression of many different genes, and the expression of these individual genes is affected by multiple environmental factors. Therefore, it is very difficult to elucidate the specific genes that cause specific diseases.
- Allergic diseases are thought to be related to the expression of genes having mutations or defects, or to overexpression or reduced expression of specific genes. To understand the role of gene expression in disease, it is necessary to understand how genes are involved in pathogenesis and how external stimuli, such as drugs, alter gene expression.
- the differential display (DD) method is useful as such a method.
- the differential display method was first developed in 1992 by Liang and Pardee (Science, 1992, 257: 967-971). By using this method, dozens or more of samples can be screened at a time, and It is possible to detect a gene whose expression has changed. Using such a method to examine genes with mutations or genes whose expression changes with time or environment is expected to provide important information for elucidating pathogenic genes. These genes include those whose expression is affected by environmental factors.
- hay fever is one of the diseases seen in many people in recent years.
- the pathogenesis of hay fever may involve several genes whose expression is affected by pollen, one of the environmental factors. Under such circumstances, it has been desired to isolate a gene associated with hay fever. Disclosure of the invention
- An object of the present invention is to provide a gene associated with an allergic disease, particularly hay fever. Another object of the present invention is to provide a method for detecting an allergic disease and a method for screening a candidate compound for a therapeutic drug for allergic diseases, using the expression of the gene as an index.
- the inventors of the present invention have determined from a plurality of human blood samples based on the already established “Fluorescent DD (Fluorescent DD) method” (T. Ito et al., 1994, FEBS Lett. 351: 231-236).
- Fluorescent DD Fluorescent DD
- the present inventors collected T cells from blood before and after pollen scattering in multiple subjects including pollinosis patients, and expressed T cells between subjects with different cedar pollen-specific IgE values and before and after pollen scattering.
- the present inventors divided the subjects into a group having a high IgE value for cedar pollen (a group predisposed to cedar pollinosis) and another group (healthy subjects), and determined the expression level of the isolated “373” gene in both groups. As a result of comparative analysis, it was found that the gene showed a significantly lower value in the cedar pollinosis-diseased group as compared with healthy subjects. Therefore, the present inventors have determined that the expression level of the gene As an index, it has been found that it is possible to conduct an allergic disease test and to screen for a candidate drug for a therapeutic drug for allergic disease.
- the present invention relates to a gene showing high expression in a person having an allergic predisposition, a method for testing an allergic disease using the expression of the gene as an index, and a method for screening a candidate compound for a therapeutic drug for an allergic disease. More specifically,
- nucleic acid molecule encoding a protein comprising the amino acid sequence of SEQ ID NO: 2,
- nucleic acid molecule comprising the coding region of the nucleotide sequence of SEQ ID NO: 1,
- T cells are prepared from peripheral blood of the subject
- a method for screening a candidate drug for treating an allergic disease comprising:
- step (f) selecting a compound that increases the amount of RNA measured in step (e) compared to a control (in the case where the test compound is not administered),
- step (e) performing a polymerase chain reaction (PCR) using the cDNA as a type I and the DNA according to [3] as a primer, (f) selecting a compound that increases the amount of DNA amplified in step (e) compared to a control (in the case where the test compound is not administered),
- PCR polymerase chain reaction
- step (h) selecting a compound that increases the amount of RNA measured in step (g) as compared to a control (in the case where the test compound is not administered),
- a method for screening a candidate drug for treating an allergic disease comprising:
- step (h) selecting a compound that increases the amount of DNA amplified in step (g) as compared to a control (in the case where the test compound is not administered),
- step (g) selecting a compound that increases the amount of RNA measured in step (f) compared to a control (in the case where no test compound is administered),
- a method for screening a candidate compound for a therapeutic agent for an allergic disease comprising: (a a step of preparing lymphocytes from a model animal of hay fever or a human having hay fever,
- step (g) selecting a compound that increases the amount of DNA amplified in step (f) as compared to a control (in the case where no test compound is administered),
- a method of screening a candidate compound for a therapeutic agent for an allergic disease comprising: (a) stimulating established T cells with a lymphocyte stimulating substance in the presence of a test compound; Preparing an RNA sample from T cells,
- step (e) selecting a compound that increases the amount of RNA measured in step (d) compared to a control (in the case where no test compound is administered),
- step (e) selecting a compound that increases the amount of DNA amplified in step (d) as compared to a control (when no test compound is administered);
- T cells are prepared from peripheral blood of a hay fever model animal, (10) or the method according to (11),
- lymphocytes are prepared from peripheral blood
- [21] a protein comprising the amino acid sequence of SEQ ID NO: 2, and [22] an antibody that binds to the protein of [21].
- an allergic disease is a general term for diseases associated with allergic reactions. More specifically, it can be defined as identifying the allergen, demonstrating a deep link between exposure to the allergen and the development of the lesion, and demonstrating an immunological mechanism for the lesion.
- the immunological mechanism means that T cells show an immune response by allergen stimulation.
- Representative allergies One disease can be bronchial asthma, allergic rhinitis, atopic dermatitis, hay fever, or insect allergy.
- Allergic predisposition (al lergi c diathes is) is a genetic factor transmitted from parents to children with allergic diseases. Allergic diseases that occur familially are also called atopic diseases, and the genetic factors that cause them are atopic predisposition.
- the “nucleic acid molecule” in the present invention includes DNA and RNA.
- the “test for allergic disease” in the present invention includes not only a test for a patient who has an allergic disease, but also a test for determining whether or not a subject who does not have an allergic disease has an allergic predisposition. Inspection is also included.
- the present invention relates to a novel gene “373” that is correlated with an IgE production response to cedar pollen of an individual.
- the nucleotide sequence of the "373" cDNA found by the present inventors is shown in SEQ ID NO: 1, and the amino acid sequence of the protein encoded by "373” is shown in SEQ ID NO: 2.
- the nucleotide sequence of the “373” cDNA isolated by the present inventors is a partial distribution sequence of the “373” cDNA, and those skilled in the art may use the sequence information of the “373” cDNA described in SEQ ID NO: 1.
- isolation of the full-length cDNA of “373” can be usually performed. That is, a method for screening a T cell cDNA library or the like by hybridization using a sequence derived from “373” as a probe, or a method for screening a T cell cDNA library or the like using a sequence derived from “373” as a primer.
- a library is screened by using as an indicator that the amplification product of the size specific to the primer is obtained, and the full length of the cDNA is obtained.
- the RACE method Frohman, MA et al .: Proc.
- the mRNA derived from T cells is converted to single-stranded cDNA using a sequence derived from “373” as a primer, and oligomers are added to the ends before PCR Natl. Acad. Sc. USA, 85: 8992, 1988).
- the “nucleic acid molecule encoding a protein containing the amino acid sequence of SEQ ID NO: 2” includes the full-length “373” cDNA isolated in this manner.
- the total length "3 73 '' Once the cDNA is isolated, insert it into an appropriate expression vector, introduce it into an appropriate host cell, culture the cell, and recover the expressed protein from the cell, A recombinant protein encoded by the cDNA can be prepared.
- the “protein containing the amino acid sequence of SEQ ID NO: 2” includes the full-length “373” protein thus prepared.
- “373” showed significantly lower expression in the atopic predisposition group (powder value for cedar pollen was 3.5 AU / ml or more) than in the non-atopic predisposition group. Therefore, it is thought that it is possible to conduct an allergic disease test and a screening of candidate compounds for a therapeutic drug for allergic diseases, using the expression of the “373” gene (including transcription into mRNA and translation into protein) as an index. .
- cedar pollinosis is particularly preferred as an allergic disease to be tested and treated.
- Detection of the expression of the “373” gene in the test for allergic disease can be performed by a hybridization technique using a nucleic acid that hybridizes to the “373” gene as a probe, or a DNA that hybridizes to the gene of the present invention. It can be carried out by using gene amplification technology as a primer.
- a nucleic acid molecule that specifically hybridizes to the “373” gene and has a chain length of at least 15 nucleotides is used.
- the term “specifically hybridizes” as used herein refers to the ability to cross-hybridize with MA and / or RNA or other genes encoding other genes under ordinary hybridization conditions, preferably under stringent hybridization conditions. It means that the dimensioning does not occur significantly.
- the probe and the transfer membrane are hybridized at 68 in Express Hydridat on Solution (manufactured by CL0NTECH), and finally 0.1 X SSC, 0.05% SDS Stringent conditions can be achieved by washing with a solution at 50.
- nucleic acid molecules may be synthetic or natural.
- Hybrida Usually, a labeled DNA is used as the probe DNA used in the experiment. Labels include, for example, nick translation labeling using DNA polymerase 1, end labeling using polynucleotide kinase, fill-in labeling using Klenow fragment (Berger SL, Kimmel AR. (1987) Guide to Molecular Cloning Techniques , Method in Enzymology, Academic Press; Hames BD, Higg ins SJ (1985) Genes Probes: A Practical Approach. IRL Press; Sambrook J, Fritsch EF, Maniatis T. (1989) Molecular Cloning: a Laboratory Manual, 2nd Edn.
- Testing of allergic diseases using the hybridization technique can be performed using, for example, a Northern hybridization method, a dot blot method, a method using a DNA microarray, and the like.
- an RT-PCR method can be used as a method utilizing the gene amplification technique.
- the expression of the “373” gene can be more accurately quantified by using a PCR amplification monitor method as shown in Example 8 in the process of gene amplification.
- probes that are labeled with different fluorescent dyes at both ends to cancel each other's fluorescence are used to hybridize to the detection target (DNA or RNA reverse transcript).
- the detection target DNA or RNA reverse transcript.
- the two fluorescent dyes are separated and the fluorescence is detected. This fluorescence is detected in real time.
- the number of copies of the target in the target sample can be determined at the same time as the number of cycles of PCR amplification by simultaneously measuring the standard sample whose copy number is clear for the target.
- the test for an allergic disease of the present invention may be performed by detecting the protein encoded by “373”.
- a Western blotting method using an antibody that binds to the protein encoded by “373”, an immunoprecipitation method, an ELISA method, and the like can be used.
- Antibodies to the protein encoded by "373" of the present invention can be obtained as polyclonal antibodies or monoclonal antibodies using techniques well known to those skilled in the art (Milstein C, et al., 1983, Nature 305 (5934): 537-40).
- the protein or its partial peptide to be used as an antigen is, for example, a 373 gene or a part thereof is incorporated into an expression vector, and this is introduced into an appropriate host cell to prepare a transformant. Is cultured to express a recombinant protein, and the expressed recombinant protein is purified from a culture or a culture supernatant.
- the expression of the gene of the present invention if the expression of the gene of the present invention is significantly low, the subject can be determined to have a high allergen such as cedar pollen antigen and to have an allergic predisposition. .
- the measurement of the expression level of the gene of the present invention in combination with the allergen-specific antibody titer, symptoms, and the like can be used for examination of allergic diseases.
- the “373” gene expressed in T cells has high IgE specific to pollen antigens, and its expression is reduced in hay fever patients. Even in an allergic patient who exhibits responsiveness to an antigen other than cedar pollen, the expression of the “373” gene may be reduced while T cell responsiveness to the antigen is enhanced. In such cases, decreased expression of the “373” gene corresponds to increased T cell responsiveness, By monitoring the expression of the drug, screening for therapeutic drugs for allergic diseases can be performed.
- the method for screening a candidate compound for treating an allergic disease of the present invention can be performed in vivo or in vitro.
- in vivo screening for example, after administering a candidate drug and stimulating with a pollen antigen to a model animal such as a mouse, T cells are separated from peripheral blood, and a transcript of “373” is obtained. Measure.
- lymphocytes are separated from peripheral blood, and the lymphocytes are stimulated in vitro with cedar pollen antigen or the like.
- T cells are separated from the lymphocytes after the stimulation, and the transcript of the “373” gene is measured.
- the stimulation with the pollen antigen is performed for the purpose of inducing an antigen-specific allergic reaction in T cells and determining the therapeutic effect of the candidate compound on it.
- peripheral blood lymphocytes are collected from hay fever humans or mice, and the peripheral blood lymphocytes are stimulated in vitro with cedar pollen antigen.
- Candidate compounds are added during in vitro stimulation.
- the T cells are then isolated from the stimulated peripheral blood lymphocytes and the transcript of “373” is measured. As a result of this measurement, a compound that increases the transcription amount of the “373” gene is selected.
- Screening of the candidate compound for treating an allergic disease of the present invention can also be performed using established T cells.
- established T cells such as Molt4 cells and Jurkat cells are stimulated in vitro with a lymphocyte stimulator.
- lymphocyte stimulants include calcium ionophore (A23187), PMA, phytohemagglutinin (PHA), and the like.
- Add candidate drugs during in vitro stimulation Thereafter, the transcription amount of the “373” gene in the established T cells is measured. As a result of this measurement, a compound that increases the transcription of the “373” gene is selected.
- Detection of the expression of the “373” gene in the screening of candidate compounds for the treatment of allergic diseases is carried out by the same method as the test for allergic diseases of the present invention.
- the hybridization can be carried out using a hybridization technique using a nucleic acid to be probed, or a gene amplification technique using a DNA that hybridizes to the gene of the present invention as a primer.
- a Northern hybridization method for example, a dot plot method, a method using a DNA microarray, or the like can be used.
- a method utilizing the gene amplification technique an RT-PCR method can be used. In the RT-PCR method, more accurate quantification of the expression of the “373” gene can be performed by using a PCR amplification monitor method as shown in Example 8 in the gene amplification process.
- test compounds used in these screenings include compound samples synthesized by existing chemical methods such as steroid derivatives, compound samples synthesized by combinatorial chemistry, extracts of animal and plant tissues, and microorganisms. A mixture containing a plurality of compounds such as a culture, a sample purified from them, and the like can be mentioned.
- the compound isolated by the method for screening a candidate compound for a therapeutic drug for an allergic disease of the present invention is a candidate for a drug which improves allergic predisposition to an allergen such as a pollen antigen.
- the compound isolated by the screening method of the present invention when used as a pharmaceutical, it can be used as a pharmaceutical preparation by a known pharmaceutical production method.
- a pharmaceutically acceptable carrier or vehicle such as saline, vegetable oils, suspensions, surfactants, stabilizers, etc.
- Administration will be transdermal, intranasal, transbronchial, intramuscular, intravenous, or oral, depending on the nature of the compound.
- the dose varies depending on the patient's age, body weight, symptoms, administration method and the like, but those skilled in the art can appropriately select an appropriate dose.
- the screening of the present invention may be carried out by detecting the expression of the “373” protein in addition to detecting the expression of the “373” gene. That is, screening using the aforementioned “373” gene as an index Instead of using the “373” gene in the method, the “373” protein may be used as an index. In this case, the detection of the expression of the “373” protein is generally performed using an antibody that binds to the “373” protein.
- This screening includes, for example, (a) a step of preparing T cells from a subject, (b) a step of preparing a protein sample from the T cells, and (c) binding of “373” protein in the protein sample to the protein. (D) selecting a compound that increases the amount of the protein to be detected as compared to a control (in the case where the test compound is not administered). it can.
- a step of administering a test compound to a model animal of hay fever and stimulating it with a pollen antigen (b) a step of preparing T cells from the model animal, (c) preparing a protein sample from the T cells (D) detecting "373" protein in the protein sample using an antibody that binds to the protein; (e) comparing the control (when no test compound is administered) with the protein A step of selecting a compound that increases the detection amount of the compound.
- An antibody that binds to the “373” protein used in this screening can be prepared by a known method.
- a polyclonal antibody against the protein of the present invention is obtained by extracting blood of a mammal sensitized with an antigen and separating serum from the blood by a known method.
- a serum containing the polyclonal antibody may be used. If necessary, a fraction containing the polyclonal antibody may be further isolated from this serum and used.
- an immune cell may be obtained from a mammal sensitized with the above antigen, subjected to cell fusion to prepare a hybridoma, and an antibody produced by the hybridoma may be prepared.
- the antibody When detecting the “373” protein, the antibody may be appropriately labeled and used. Further, without labeling the antibody, a substance that specifically binds to the antibody, for example, protein A or protein G may be labeled and detected. Examples of specific detection methods include: For example, the ELISA method can be used. BRIEF DESCRIPTION OF THE FIGURES
- FIG. 1 is a diagram showing the antibody titers of cedar pollen-specific IgE antibodies in a total of 18 blood samples from 10 subjects who collected blood.
- the value of cedar pollen-specific IgE antibody in each blood sample of subjects A to ⁇ was expressed in AU / ml.
- the pair before pollen scattering is shown on the left (white column), and the one after scattering is shown on the right (black column).
- Subjects A and B collected only blood after pollen scattering.
- FIG. 2 is a graph showing changes in expression of “373” in a high IgE group and a normal IgE group when grouped according to cedar pollen-specific IgE values. Error bars represent standard deviation.
- FIG. 3 is a diagram showing changes in the expression of “373” in the pre-scattering group and the post-scattering group when grouping was performed before and after the cedar pollen scattering time. Error bars represent standard deviation.
- FIG. 4 is a photograph showing the results of Northern hybridization of “373” using mRNAs prepared from various cancer cell lines. BEST MODE FOR CARRYING OUT THE INVENTION
- Fig. 1 shows the measured cedar pollen-specific IgE values before and after pollen scattering in each subject. As shown, most of the 10 subjects had increased serum levels of cedar pollen-specific IgE after pollen exposure. The presence of atopic predisposition was determined by whether the value of the CAP RAST test for cedar pollen-specific IgE was greater than 2. That is, eight subjects A to G and I were regarded as atopic predisposition group (hereinafter also referred to as “patient”), and two subjects, subjects H and, were regarded as healthy subjects (hereinafter also referred to as “normal group”). Of the eight subjects with an atopic predisposition, seven exhibited symptoms of allergic rhinitis after pollen dispersal.
- patient atopic predisposition group
- normal group healthy subjects
- the procedure was as follows. First, the wall of the syringe was uniformly treated with 1 ml of Heparin from Nopo, etc., and blood was collected in a 10 ml syringe containing a final concentration of 50 unit / ml heparin. At this time, two 22G needles were prepared for one blood sample. The injection needle was removed and transferred to a 50 ml centrifuge tube (made of polypropylene). After centrifugation at 1500 rpm for 5 minutes at room temperature, 1.1 ml was collected from the surface as close as possible, and centrifuged at 15000 rpm for 5 minutes and at 4 to collect 1 ml of the supernatant as plasma.
- the lymphocyte fraction obtained in Example 2 was centrifuged at 1200 rpm at 4 for 5 minutes, and suspended in BSA / PBS at 10 8 per 100 1. The capacity became about 201. This was transferred to an Eppendorf tube (1.5 ml), and the CD3 microbead solution was added. After that, it was left at 4-10 for 30 minutes (it was not placed on ice at this time). This sample was treated with a magnetic cell saw Yuichi (MACS) (manufactured by Miltenyi Biotech Inc.) as follows.
- MCS magnetic cell saw Yuichi
- the MS + / RS + column was attached to a Mini MACS or Vario MACS separation unit (without needles). 500 1 of BSA / PBS was gently applied to the column and the buffer was drained. Next, cells labeled with CD3 microbeads were applied to the column. The column was washed three times with 500 il (B cell fraction). The column was removed from the separation unit and placed on a tube for collecting the eluate. 1 ml of BSA / PBS was applied to the column, and positive cells were rapidly flushed out using a plunger attached to the force column. This was used as the T cell fraction.
- the obtained T cell fraction was centrifuged at 1200 rpm for 5 minutes at 4t.
- the precipitate was washed once with BSA / PBS. After the second wash, resuspend the cells in 1 ml and aliquot The number of cells was measured by diluting with blue two-fold. The total cell number was about 4 ⁇ 10 6 .
- RNA from T cells was prepared using RNeasy Mini (manufactured by Qiagen) according to the attached manual in principle. All operations were performed at room temperature, wearing gloves. Four volumes of ethanol were added to Posh Buffer RPE. The lysis buffer RLT was supplemented with 10 l / ml 2-mercaptoethanol. The cell suspension was centrifuged at 1000-1200 rpm for 5 minutes, and the supernatant was removed by aspiration. To the precipitate was added 350 1 lysis buffer RLT (containing 2-mercaptoethanol) solution. At this stage, lysates of cells in RLT buffer could be stored at -70.
- RNeasy Mini manufactured by Qiagen
- the cell lysate was stored frozen, incubate at 37 for 10-15 minutes, and centrifuge for 3 minutes at maximum speed if insolubles were visible, collecting only the supernatant.
- the lysate was homogenized with a syringe equipped with a 20 G force terran needle and then treated with Q IAshredder. (That is, usually, a lysate of 3501 cells was applied to a Kyaschlets unit using a Pitman. This was centrifuged at 1500 rpm for 2 minutes, and the effluent was collected.) 70% of 3501 Ethanol was added and mixed well by pipetting.
- the RNeasy spin column was attached to the attached 2 ml tube, the lysate mixture of cells was applied, centrifuged at 8000 Xg (11500 rpm) for 1 minute, and the effluent was discarded.
- Posh buffer RW1 700 1 was applied to the column, and it was put upright for 5 minutes. The mixture was centrifuged at 11,500 rpm for 15 seconds, and the effluent was discarded.
- the column was placed in a new 2 ml tube, and Posh buffer RPE (containing ethanol) 500 1 was applied to the column. The mixture was centrifuged at 11,500 rpm for 15 seconds, and the effluent was discarded. Wash buffer RPE 500 1 was applied to the column and centrifuged at maximum speed for 2 minutes.
- the column was placed in a new 1.5 ml tube, 30 ⁇ l of DEPC-treated water was applied, and the lid was capped and allowed to stand for 10 minutes. After centrifugation at 11,500 rpm for 10 minutes, total RNA was obtained. Measure the concentration, and if the volume is low, re-attach the column to a new 1.5 ml tube, apply D EPC-treated water 30 1, cap the lid, stand for 10 minutes, and set the column at 11500 i "pm. Centrifuge for minutes.
- Fluorescent differential display F1 uorescent Differential Display, abbreviated as “DD”) using total RNA prepared from T cells is described in the literature (T. Ito et al., 1994, FEBS Lett. 351: 231-236). Performed according to the method. Total RNA prepared from T cells was reverse transcribed to obtain cDNA.
- cDNA was prepared using 0.2 g of total RNA for each of the three anchor primers.
- cDNA was prepared using 0.4 // g RNA for each of the three anchor primers. All cDNAs were diluted to a final concentration of 0.4 ng / 1 RNA and used in the experiments.
- a DD-PCR reaction was performed using cDNA equivalent to lng RNA per reaction. Table 1 shows the composition of the reaction solution. cDNA (0.4 ng / 1 RNA equivalent) 2.5 1
- the PCR reaction conditions were as follows: 1 cycle of ⁇ 95 3 minutes, 5 minutes at 40, 5 minutes at 72 '', followed by 30 cycles of ⁇ 94 ⁇ 5 seconds, 2 minutes at 40, 1 minute at 72 '', followed by 72 cycles For 5 minutes and then continuously to 4.
- the primer pairs used were the primer primers GT15A (SEQ ID NO: 3), GT 15C (SEQ ID NO: 4), and GT15G (SEQ ID NO: 5). 110110, AG 111-199, and AG 200-287 were combined, for a total of 287 sets of reactions.
- an oligomer composed of 10 nucleotides having a GC content of 50% was designed, synthesized, and used.
- a 6% denaturing polyacrylamide gel was prepared, and samples were applied and electrophoresed at 40 W for 210 minutes. Thereafter, the gel plate was scanned using Hitachi Fluorescence Image Analyzer -FMBI0 II, and electrophoretic images were obtained by fluorescence detection.
- Example 7 Amplification of band excised by DD analysis and sequencing Two DD analyzes were performed using a number of arbitrary primers. Bands that differed before and after pollen dispersal or between the patient and healthy groups were selected and reproducible bands were excised from the gel in two experiments.
- the band of “373” was found by DD analysis using GT15A (SEQ ID NO: 3) as an anchor primer and AG18 (AAGCTCTCGAZ SEQ ID NO: 6) as an arbitrary primer.
- the gel containing the “373” band was cut out, stored in a TE solution, and heated at 60 for 10 minutes to elute DNA from the gel.
- PCR was performed under the same conditions as DD-PCR, and a DNA fragment of about 190 bp was amplified.
- GT15A was used as the primer and AG18 was used as the optional primer.
- the amplified DNA fragment was cloned using a plasmid vector pCR2.1 (Invitrogen) to obtain a plasmid P373-18 having a DNA fragment of about 190 bp.
- the nucleotide sequence of the DNA fragment was determined according to a conventional method.
- the expression amount of “373” was quantified by the TaqMan method using ABI-PRI SM7700. This method uses a fluorescent dye to quantitatively detect the PCR-amplified DNA strand in real time.
- RNA samples before and after cedar pollen scattering were collected from 22 volunteers in the spring of 1998, T cells were prepared, and total RNA was extracted. The expression level of the target gene was quantified using a total of 44 RNA samples.
- primers P373f G GAMGATCGTCAGGAMCTGGZ SEQ ID NO: 7
- P373r TCCCTTCMCAAGTCTGCCCZ SEQ ID NO: 8
- TaqMan probe P373 CAGCATCATCATCAMCATGGCTTCCTTG NO SEQ ID NO: 9
- the TaqMan probe P373 was fluorescently labeled at the 5 'end with FAM (6-carboxyfluorescein) and at the 3' end with TA RA (6-carboxy-tetramethyl-rhodamine).
- reverse transcribed cDNA was used as a primer with poly T (12-18 mer) from 44 total RNAs.
- a serial dilution of the plasmid P373-18 obtained in Example 7 was used to carry out the reaction.
- Table 3 shows the composition of the reaction mixture for monitoring PCR amplification.
- the same quantitative analysis was performed on the 3) -actin (/ 3-actin) gene, and correction was performed based on the copy number of those genes. The number of copies of the gene (373) was calculated.
- Table 4 shows the number (copy number) of “373” in each sample corrected for the copy number of 3-actin. For the correction, the average copy of 3-actin) in all samples was obtained, and the copy number of “373” in each sample was divided by the relative value of 3-actin in each sample when that was set to 1. Table 4
- the grouping was performed before and after scattering of Japanese cedar pollen, or at least 3.5 AU / ml for each specific serum IgE in serum (high IgE group) and other (normal). (IgE group). For example, in the case of cedar pollen, the number of individuals in each group was 10 in the high IgE group and 12 in the normal IgE group. The test was performed separately for the group showing 200 AU / ml for total IgE and the other groups. Two-way analysis of variance was tested using StatView software (Abacuus Concepts, Inc.).
- CL0NTECH Human Immune System MTN Blot II and Human Cancer Cell Line MTN Blot both membranes already transcribed mRNA were used.
- the probe DNA was labeled with 32 P using a Random Primer Labeling Kit (TAKARA).
- Northern hybridization and membrane washing were performed using Express Hybridization Solution (CLONTECH) according to the instructions attached.
- Washing was performed three times at room temperature using 2xSSC-0.13 ⁇ 4SDS while measuring the radioactivity of the membrane with a Geiger counter. When the count reached 1000 or more and tens of thousands or less under the condition of being in close contact with the membrane, it was exposed to an imaging plate to acquire an image. Images were acquired with a Molecular Imager System (BIO-RAD). As a result of Northern analysis of “373”, a main band of 7.5 kb and a sub-band of 6.7 kb were detected, and it was inferred that “373” of the present invention was expressed as an approximately 7.5 kb mRNA (FIG. 4). ).
- a database search of the nucleotide sequence of "373” revealed that there were multiple ESTs with homology. Therefore, after extracting an EST sequence having homology to “373” from dbEST, the individual sequences were assembled using ABI AutoAssembler to obtain a 5.6 kb sequence.
- An open reading frame (0RF) consisting of 1324 amino acids was predicted in this sequence, but the absence of the 5 'non-coding region and the result of Northern hybridization revealed that the predicted mRNA size was 7.5%. Since it was kb, 5'-RACE was performed next, and the further upstream sequence was determined.
- a novel gene having a correlation with a cedar pollen-specific IgE value was provided.
- the expression of the gene of the present invention as an index it has become possible to carry out a test for whether or not the subject has an allergic predisposition and a screening for candidate compounds for a therapeutic drug for allergic diseases.
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Abstract
Description
明細書 花粉症関連遺伝子、 373 技術分野 Description hay fever-related gene, 373 technical fields
本発明は、 アレルギー疾患、 特に花粉症に関連する遺伝子、 並びに該遺伝子の 発現を指標としたァレルギ一疾患の検査方法およびァレルギ一疾患治療薬候補化 合物のスクリーニング方法に関する。 背景技術 The present invention relates to a gene associated with an allergic disease, in particular, hay fever, a method for testing an allergic disease using an expression of the gene as an index, and a method for screening a candidate therapeutic drug for an allergic disease. Background art
花粉症を含むアレルギー疾患は多因子性の病気 (multifactorial diseases)と 考えられている。 これらの病気は多くの異なる遺伝子の発現の相互作用によって 起こり、 これらの個々の遺伝子の発現は、複数の環境要因によって影響を受ける。 このため、 特定の病気を起こす特定の遺伝子を解明することは、 非常に困難であ る。 Allergic diseases, including hay fever, are considered multifactorial diseases. These diseases are caused by the interaction of the expression of many different genes, and the expression of these individual genes is affected by multiple environmental factors. Therefore, it is very difficult to elucidate the specific genes that cause specific diseases.
またアレルギー疾患は、 変異や欠陥を有する遺伝子の発現や、 特定の遺伝子の 過剰発現や発現量の減少が関わっていると考えられている。 病気に関して遺伝子 発現が果たしている役割を解明するためには、遺伝子が発症にどのように関わり、 薬剤などの外的な刺激が遺伝子発現をどのように変化させるのかを理解する必要 がある。 Allergic diseases are thought to be related to the expression of genes having mutations or defects, or to overexpression or reduced expression of specific genes. To understand the role of gene expression in disease, it is necessary to understand how genes are involved in pathogenesis and how external stimuli, such as drugs, alter gene expression.
近年の遺伝子発現の解析技術の発達により、 多くの臨床試料で、 遺伝子の発現 を解析 ·比較することが可能となった。 このような方法としては、 ディファレン シャルディスプレイ(DD)法が有用である。ディファレンシャルディスプレイ法は、 ライアンおよびパディ一(Liang and Pardee)によって 1992 年に最初に開発され た(Science, 1992,257:967- 971)。 この方法を用いることによって、 1回に数十種 類以上のサンプルをスクリーニングすることができ、 それらのサンプル中で発現 が変化した遺伝子を検出することが可能である。 このような方法を用いて、 変異 が生じた遺伝子や、 時間や環境とともに発現が変わるような遺伝子を調べること によって、 病因遺伝子の解明のために重要な情報がもたらされることが期待され る。 これらの遺伝子には、 環境要因によって発現に影響を受けるような遺伝子も 含まれる。 Recent developments in gene expression analysis technology have made it possible to analyze and compare gene expression in many clinical samples. The differential display (DD) method is useful as such a method. The differential display method was first developed in 1992 by Liang and Pardee (Science, 1992, 257: 967-971). By using this method, dozens or more of samples can be screened at a time, and It is possible to detect a gene whose expression has changed. Using such a method to examine genes with mutations or genes whose expression changes with time or environment is expected to provide important information for elucidating pathogenic genes. These genes include those whose expression is affected by environmental factors.
アレルギー疾患の中でも花粉症は、近年多くの人に見られる疾患の一つである。 花粉症の病因には、 環境要因の一つである花粉によって発現が影響を受ける複数 の遺伝子が関わっていると考えられる。 このような事情から、 花粉症に関連する 遺伝子を単離することが望まれていた。 発明の開示 Among allergic diseases, hay fever is one of the diseases seen in many people in recent years. The pathogenesis of hay fever may involve several genes whose expression is affected by pollen, one of the environmental factors. Under such circumstances, it has been desired to isolate a gene associated with hay fever. Disclosure of the invention
本発明は、 アレルギー疾患、 特に花粉症に関連する遺伝子を提供することを課 題とする。 さらに、 本発明は該遺伝子の発現を指標とした、 アレルギー疾患の検 査方法およびアレルギー疾患治療薬候補化合物のスクリーニング方法を提供する ことを課題とする。 An object of the present invention is to provide a gene associated with an allergic disease, particularly hay fever. Another object of the present invention is to provide a method for detecting an allergic disease and a method for screening a candidate compound for a therapeutic drug for allergic diseases, using the expression of the gene as an index.
本発明者らは、 既に確立された 「蛍光 DD (Fluorescent DD)法」 (T. I t oら, 199 4, FEBS Let t. 351 : 231-236) の手順に基づき、 複数のヒトの血液から調製した T細胞 RNAサンプルを解析できる DDシステムを新たに開発した。このシステムを 用いて、 本発明者らは花粉症患者を含む複数の被験者について、 花粉飛散の前後 の血液から T細胞を採取し、 スギ花粉特異的 IgE値の異なる被験者間や花粉飛散 前後で発現量が変化する遺伝子のスクリーニングを行い、 新規遺伝子 (「373」 遺 伝子) を単離した。 The inventors of the present invention have determined from a plurality of human blood samples based on the already established “Fluorescent DD (Fluorescent DD) method” (T. Ito et al., 1994, FEBS Lett. 351: 231-236). We have newly developed a DD system that can analyze prepared T cell RNA samples. Using this system, the present inventors collected T cells from blood before and after pollen scattering in multiple subjects including pollinosis patients, and expressed T cells between subjects with different cedar pollen-specific IgE values and before and after pollen scattering. We screened for genes with varying amounts and isolated a novel gene (the “373” gene).
本発明者らは、被験者をスギ花粉に対する IgE値の高い群(スギ花粉症素因群) とそれ以外の群 (健常者) に分け、 単離した 「373」遺伝子の発現量を両群におい て比較解析した結果、 該遺伝子が健常者と比較してスギ花粉症素因群において有 意に低値を示すことを見出した。 このため、 本発明者らは、 該遺伝子の発現量を 指標として、 ァレルギ一疾患の検査およびァレルギ一疾患治療薬候補化合物のス クリーニングを行うことが可能であることを見出した。 The present inventors divided the subjects into a group having a high IgE value for cedar pollen (a group predisposed to cedar pollinosis) and another group (healthy subjects), and determined the expression level of the isolated “373” gene in both groups. As a result of comparative analysis, it was found that the gene showed a significantly lower value in the cedar pollinosis-diseased group as compared with healthy subjects. Therefore, the present inventors have determined that the expression level of the gene As an index, it has been found that it is possible to conduct an allergic disease test and to screen for a candidate drug for a therapeutic drug for allergic disease.
すなわち、 本発明は、 アレルギー素因を有する者に高い発現を示す遺伝子、 お よび該遺伝子の発現を指標としたァレルギ一疾患の検査方法およびァレルギ一疾 患治療薬候補化合物のスクリーニング方法に関する。 より具体的には、 That is, the present invention relates to a gene showing high expression in a person having an allergic predisposition, a method for testing an allergic disease using the expression of the gene as an index, and a method for screening a candidate compound for a therapeutic drug for an allergic disease. More specifically,
〔1〕 配列番号: 2に記載のアミノ酸配列を含むタンパク質をコードする核酸分 子、 [1] a nucleic acid molecule encoding a protein comprising the amino acid sequence of SEQ ID NO: 2,
〔2〕 配列番号: 1に記載の塩基配列のコード領域を含む核酸分子、 [2] a nucleic acid molecule comprising the coding region of the nucleotide sequence of SEQ ID NO: 1,
〔3〕 〔1〕 または〔2〕 に記載の核酸分子に特異的にハイブリダィズし、 少なく とも 15ヌクレオチドの鎖長を有する DNA、 (3) a DNA that specifically hybridizes to the nucleic acid molecule according to (1) or (2) and has a chain length of at least 15 nucleotides;
〔4〕 〔3〕 に記載の DNAを用いることを特徴とする、 〔1〕 に記載の核酸分子の 検出方法、 (4) The method for detecting a nucleic acid molecule according to (1), which comprises using the DNA according to (3).
〔5〕 アレルギー疾患の検査方法であって、 [5] a method for testing an allergic disease,
( a ) 被験者から T細胞を調製する工程、 (a) preparing T cells from a subject,
( b ) 該 T細胞から RNA試料を調製する工程、 (b) preparing an RNA sample from the T cells,
( c ) 該 RNA試料に対して、 標識した 〔3〕 に記載の DNAをプローブとして、 ハイブリダイゼ一シヨンを行う工程、 (c) a step of performing hybridization on the RNA sample using the labeled DNA according to (3) as a probe,
( d ) 標識した 〔3〕 に記載の DNAにハイブリダィズする被験者由来の RNA量 を測定し、 対照 (健常者の場合) と比較する工程、 を含む方法、 (d) measuring the amount of RNA from a subject that hybridizes to the labeled DNA according to [3], and comparing it with a control (in the case of a healthy subject).
〔6〕 アレルギー疾患の検査方法であって、 [6] a method for testing an allergic disease,
( a ) 被験者から T細胞を調製する工程、 (a) preparing T cells from a subject,
( b ) 該 T細胞から RNA試料を調製する工程、 (b) preparing an RNA sample from the T cells,
( c ) 該 RNA試料に対して逆転写反応を行い cDNAを合成する工程、 (c) performing a reverse transcription reaction on the RNA sample to synthesize cDNA;
( d ) 該 cDNAを铸型に、 〔3〕 に記載の DNAをプライマーとして、 ポリメラ一 ゼ連鎖反応 (PCR) を行う工程、 (d) a step of performing a polymerase chain reaction (PCR) using the cDNA as a type I and the DNA according to [3] as a primer,
( e ) ポリメラーゼ連鎖反応により増幅された DNA量を、 対照 (健常者の場合) と比較する工程、 を含む方法、 (e) Determine the amount of DNA amplified by the polymerase chain reaction as a control (for healthy subjects) Comparing to a method comprising:
〔7〕ポリメラーゼ連鎖反応を PCR増幅モニター法により行う、 〔6〕に記載の方 法、 (7) The method according to (6), wherein the polymerase chain reaction is performed by a PCR amplification monitor method.
〔8〕 T細胞が被験者の末梢血から調製される、 〔5〕 から 〔7〕 のいずれかに記 載の方法、 (8) the method according to any of (5) to (7), wherein T cells are prepared from peripheral blood of the subject;
〔9〕 アレルギー疾患がスギ花粉症である、 〔5〕 から 〔8〕 のいずれかに記載の 方法、 (9) the method according to any one of (5) to (8), wherein the allergic disease is cedar pollinosis;
〔 10〕ァレルギ一疾患の治療薬候補化合物をスクリ一ニングする方法であつて、 (10) A method for screening a candidate drug for treating an allergic disease, comprising:
(a) 花粉症のモデル動物に被検化合物の投与および花粉抗原による刺激を行 う工程、 (a) administering a test compound to a model animal of hay fever and stimulating with a pollen antigen,
(b) 該モデル動物から T細胞を調製する工程、 (b) preparing T cells from the model animal,
(c) 該 T細胞から RNA試料を調製する工程、 (c) preparing an RNA sample from the T cells,
(d) 該 RNA試料に対して、 標識した 〔3〕 に記載の DNAをプローブとして、 ハイブリダイゼ一シヨンを行う工程、 (d) a step of performing hybridization on the RNA sample using the labeled DNA according to (3) as a probe,
(e) 標識した 〔3〕 に記載の DNAにハイブリダィズする該 T細胞由来の RNA 量を測定する工程、 (e) measuring the amount of RNA derived from the T cells that hybridizes to the labeled DNA according to (3),
(f ) 対照 (被検化合物非投与の場合) と比較して、 工程 (e) において測定 される RNA量を増大させる化合物を選択する工程、 を含む方法、 (f) selecting a compound that increases the amount of RNA measured in step (e) compared to a control (in the case where the test compound is not administered),
〔1 1〕アレルギー疾患の治療薬候補化合物をスクリーニングする方法であって、 (11) A method for screening a therapeutic drug candidate compound for an allergic disease,
(a) 花粉症のモデル動物に被検化合物の投与および花粉抗原による刺激を行 う工程、 (a) administering a test compound to a model animal of hay fever and stimulating with a pollen antigen,
(b) 該モデル動物から T細胞を調製する工程、 (b) preparing T cells from the model animal,
(c) 該 T細胞から RNA試料を調製する工程、 (c) preparing an RNA sample from the T cells,
(d) 該 RNA試料に対して逆転写反応を行い cDNAを合成する工程、 (d) performing a reverse transcription reaction on the RNA sample to synthesize cDNA;
(e) 該 cDNAを铸型に、 〔3〕 に記載の DNAをプライマーとして、 ポリメラー ゼ連鎖反応 (PCR) を行う工程、 (f ) 対照 (被検化合物非投与の場合) と比較して、 工程 (e) において増幅 される DNA量を増大させる化合物を選択する工程、 を含む方法、 (e) performing a polymerase chain reaction (PCR) using the cDNA as a type I and the DNA according to [3] as a primer, (f) selecting a compound that increases the amount of DNA amplified in step (e) compared to a control (in the case where the test compound is not administered),
〔12〕アレルギー疾患の治療薬候補化合物をスクリーニングする方法であって、 (12) A method for screening a therapeutic drug candidate compound for an allergic disease,
(a) 被検化合物を花粉症のモデル動物に投与する工程、 (a) administering a test compound to a model animal of hay fever,
(b) 該モデル動物からリンパ球を調製する工程、 (b) preparing lymphocytes from the model animal,
(c) 該リンパ球を花粉抗原で刺激する工程、 (c) stimulating the lymphocytes with a pollen antigen,
(d) 該抗原刺激を受けたリンパ球から T細胞を分離する工程、 (d) separating T cells from the antigen-stimulated lymphocytes,
(e) 該 T細胞から RNA試料を調製する工程、 (e) preparing an RNA sample from the T cells,
(f ) 該 RNA試料に対して、 標識した 〔3〕 に記載の DNAをプローブとして、 ハイブリダイゼ一シヨンを行う工程、 (f) performing a hybridization on the RNA sample using the labeled DNA according to (3) as a probe,
(g) 標識した 〔3〕 に記載の DNAにハイブリダィズする該 T細胞由来の RNA 量を測定する工程、 (g) a step of measuring the amount of RNA derived from the T cells that hybridizes to the labeled DNA according to (3),
(h) 対照 (被検化合物非投与の場合) と比較して、 工程 (g) において測定 される RNA量を増大させる化合物を選択する工程、 を含む方法、 (h) selecting a compound that increases the amount of RNA measured in step (g) as compared to a control (in the case where the test compound is not administered),
〔 1 3〕ァレルギ一疾患の治療薬候補化合物をスクリ一二ングする方法であつて、 (13) A method for screening a candidate drug for treating an allergic disease, comprising:
(a) 被検化合物を花粉症のモデル動物に投与する工程、 (a) administering a test compound to a model animal of hay fever,
(b) 該モデル動物からリンパ球を調製する工程、 (b) preparing lymphocytes from the model animal,
(c) 該リンパ球を花粉抗原で刺激する工程、 (c) stimulating the lymphocytes with a pollen antigen,
(d) 該抗原刺激を受けたリンパ球から T細胞を分離する工程、 (d) separating T cells from the antigen-stimulated lymphocytes,
(e) 該 T細胞から RNA試料を調製する工程、 (e) preparing an RNA sample from the T cells,
( f ) 該 RNA試料に対して逆転写反応を行い c腿を合成する工程、 (f) performing a reverse transcription reaction on the RNA sample to synthesize c thigh;
(g) 該 cDNAを铸型に、 〔3〕 に記載の DNAをプライマーとして、 ポリメラー ゼ連鎖反応 (PCR) を行う工程、 (g) performing a polymerase chain reaction (PCR) using the cDNA as a type I and the DNA according to [3] as a primer,
(h) 対照 (被検化合物非投与の場合) と比較して、 工程 (g) において増幅 される DNA量を増大させる化合物を選択する工程、 を含む方法、 (h) selecting a compound that increases the amount of DNA amplified in step (g) as compared to a control (in the case where the test compound is not administered),
〔14〕アレルギー疾患の治療薬候補化合物をスクリーニングする方法であって、 (a) 花粉症のモデル動物または花粉症を有するヒトからリンパ球を調製する 工程、 (14) a method for screening a therapeutic drug candidate compound for an allergic disease, (a) preparing lymphocytes from a hay fever model animal or human having hay fever,
(b 被検化合物の存在下、 該リンパ球を花粉抗原で刺激する工程、 (b stimulating the lymphocytes with a pollen antigen in the presence of the test compound,
(c 該抗原刺激を受けたリンパ球から T細胞を分離する工程、 (c separating a T cell from the antigen-stimulated lymphocytes,
(d 該 T細胞から RNA試料を調製する工程、 (d preparing an RNA sample from the T cells,
(e 該 RNA試料に対して、 標識した 〔3〕 に記載の DNAをプローブとして、 八イブリダイゼーシヨンを行う工程、 (e) using the labeled DNA according to (3) as a probe for the RNA sample,
(f 標識した 〔3〕 に記載の DNAにハイブリダィズする該 T細胞由来の RNA 量を測定する工程、 (f) measuring the amount of RNA derived from the T cells that hybridizes to the labeled DNA of (3),
(g 対照 (被検化合物非投与の場合) と比較して、 工程 (f) において測定 される RNA量を増大させる化合物を選択する工程、 を含む方法、 (g) selecting a compound that increases the amount of RNA measured in step (f) compared to a control (in the case where no test compound is administered),
〔1 5 アレルギー疾患の治療薬候補化合物をスクリーニングする方法であって、 (a 花粉症のモデル動物または花粉症を有するヒトからリンパ球を調製する 工程、 (15 A method for screening a candidate compound for a therapeutic agent for an allergic disease, comprising: (a a step of preparing lymphocytes from a model animal of hay fever or a human having hay fever,
(b 被検化合物の存在下、 該リンパ球を花粉抗原で刺激する工程、 (b stimulating the lymphocytes with a pollen antigen in the presence of the test compound,
(c 該抗原刺激を受けたリンパ球から T細胞を分離する工程、 (c separating a T cell from the antigen-stimulated lymphocytes,
(d 該 T細胞から RNA試料を調製する工程、 (d preparing an RNA sample from the T cells,
(e 該 RNA試料に対して逆転写反応を行い cDNAを合成する工程、 (e performing a reverse transcription reaction on the RNA sample to synthesize cDNA,
( f 該 cDNAを铸型に、 〔3〕 に記載の DNAをプライマーとして、 ポリメラ一 ゼ連鎖反応 (PCR) を行う工程、 (f) performing a polymerase chain reaction (PCR) using the cDNA as a type I and the DNA according to [3] as a primer,
(g 対照 (被検化合物非投与の場合) と比較して、 工程 (f) において増幅 される DNA量を増大させる化合物を選択する工程、 を含む方法、 (g) selecting a compound that increases the amount of DNA amplified in step (f) as compared to a control (in the case where no test compound is administered),
〔1 6 アレルギー疾患の治療薬候補化合物をスクリーニングする方法であって、 (a 被検化合物の存在下、 株化 T細胞をリンパ球刺激物質で刺激する工程、 (b 該刺激を受けた株化 T細胞から RNA試料を調製する工程、 (16 A method of screening a candidate compound for a therapeutic agent for an allergic disease, comprising: (a) stimulating established T cells with a lymphocyte stimulating substance in the presence of a test compound; Preparing an RNA sample from T cells,
(c 該 RNA試料に対して、 標識した 〔3〕 に記載の DNAをプローブとして、 ハイブリダイゼ一シヨンを行う工程、 (c) using the labeled DNA according to (3) as a probe, A step of performing a hybridization,
( d ) 標識した 〔3〕 に記載の DNAにハイブリダィズする該株化 T細胞由来の RNA量を測定する工程、 (d) measuring the amount of RNA derived from the established T cells that hybridizes to the labeled DNA according to (3),
( e ) 対照 (被検化合物非投与の場合) と比較して、 工程 (d ) において測定 される RNA量を増大させる化合物を選択する工程、 を含む方法、 (e) selecting a compound that increases the amount of RNA measured in step (d) compared to a control (in the case where no test compound is administered),
〔1 7〕アレルギー疾患の治療薬候補化合物をスクリーニングする方法であって、 (17) A method for screening a therapeutic drug candidate compound for an allergic disease,
( a ) 被検化合物の存在下、 株化 T細胞をリンパ球刺激物質で刺激する工程、(a) stimulating established T cells with a lymphocyte stimulating substance in the presence of a test compound,
( b ) 該刺激を受けた株化 T細胞から RNA試料を調製する工程、 (b) preparing an RNA sample from the stimulated established T cells,
( c ) 該 RNA試料に対して逆転写反応を行い cDNAを合成する工程、 (c) performing a reverse transcription reaction on the RNA sample to synthesize cDNA;
( d ) 該 cDNAを铸型に、 〔3〕 に記載の DNAをプライマ一として、 ポリメラ一 ゼ連鎖反応 (PCR) を行う工程、 (d) a step of performing a polymerase chain reaction (PCR) using the cDNA as a type I and the DNA according to [3] as a primer,
( e ) 対照 (被検化合物非投与の場合) と比較して、 工程 (d ) において増幅 される DNA量を増大させる化合物を選択する工程、 を含む方法、 (e) selecting a compound that increases the amount of DNA amplified in step (d) as compared to a control (when no test compound is administered);
〔1 8〕 T細胞が、 花粉症のモデル動物の末梢血から調製される、 〔1 0〕 または 〔1 1〕 に記載の方法、 (18) T cells are prepared from peripheral blood of a hay fever model animal, (10) or the method according to (11),
〔1 9〕 リンパ球が末梢血から調製される、 〔1 2〕 から 〔1 5〕 のいずれかに記 載の方法、 (19) the method of any one of (12) to (15), wherein the lymphocytes are prepared from peripheral blood,
〔2 0〕 アレルギー疾患がスギ花粉症である、 〔1 0〕 から 〔1 9〕 のいずれかに 記載の方法、 (20) the method according to any one of (10) to (19), wherein the allergic disease is cedar pollinosis,
〔2 1〕 配列番号: 2に記載のアミノ酸配列を含むタンパク質、 そして 〔2 2〕 〔2 1〕 に記載のタンパク質に結合する抗体、 に関する。 [21] a protein comprising the amino acid sequence of SEQ ID NO: 2, and [22] an antibody that binds to the protein of [21].
本発明において、 アレルギー疾患(al l ergk desease)とはアレルギー反応の関 与する疾患の総称である。 より具体的には、 アレルゲンが同定され、 アレルゲン への曝露と病変の発症に深い結びつきが証明され、 その病変に免疫学的な機序が 証明されることと定義することができる。 ここで、 免疫学的な機序とは、 アレル ゲンの刺激によって T細胞が免疫応答を示すことを意味する。 代表的なアレルギ 一疾患には、 気管支喘息、 アレルギー性鼻炎、 アトピー性皮膚炎、 花粉症、 ある いは昆虫アレルギー等を示すことができる。 アレルギー素因(al lergi c diathes i s)とは、 アレルギー疾患を持つ親から子に伝えられる遺伝的な因子である。 家族 性に発症するアレルギー疾患はアトピー性疾患とも呼ばれ、 その原因となる遺伝 的に伝えられる因子がアトピー素因である。 In the present invention, an allergic disease (allerg desease) is a general term for diseases associated with allergic reactions. More specifically, it can be defined as identifying the allergen, demonstrating a deep link between exposure to the allergen and the development of the lesion, and demonstrating an immunological mechanism for the lesion. Here, the immunological mechanism means that T cells show an immune response by allergen stimulation. Representative allergies One disease can be bronchial asthma, allergic rhinitis, atopic dermatitis, hay fever, or insect allergy. Allergic predisposition (al lergi c diathes is) is a genetic factor transmitted from parents to children with allergic diseases. Allergic diseases that occur familially are also called atopic diseases, and the genetic factors that cause them are atopic predisposition.
なお、 本発明における 「核酸分子」 には、 DNAおよび RNAが含まれる。 また、 本発明における 「アレルギー疾患の検査」 には、 アレルギー疾患を発症している 患者に対する検査だけでなく、 アレルギー疾患を発症していない被験者に対して アレルギー素因を有するか否かを判定するための検査も含まれる。 The “nucleic acid molecule” in the present invention includes DNA and RNA. In addition, the “test for allergic disease” in the present invention includes not only a test for a patient who has an allergic disease, but also a test for determining whether or not a subject who does not have an allergic disease has an allergic predisposition. Inspection is also included.
本発明は、 個体のスギ花粉に対する IgE産生反応に相関する新規な遺伝子 「37 3」 に関する。 本発明者らにより見出された 「373」 cDNAの塩基配列を配列番号: 1に、そして「373」 によりコードされるタンパク質のアミノ酸配列を配列番号: 2に示す。 The present invention relates to a novel gene “373” that is correlated with an IgE production response to cedar pollen of an individual. The nucleotide sequence of the "373" cDNA found by the present inventors is shown in SEQ ID NO: 1, and the amino acid sequence of the protein encoded by "373" is shown in SEQ ID NO: 2.
本発明者らにより単離された 「373」 cDNAの塩基配列は、 「373」 cDNAの部分配 列であるが、 当業者においては、 配列番号: 1に記載の 「373」 cDNAの配列情報 を基に、 「373」 の全長 cDNAを単離することは、 通常行いうる。即ち、 「373」 由来 の配列をプローブとして T細胞 cDNA ライブラリーなどをハイブリダィゼーショ ンによってスクリーニングする方法や、 「373」 由来の配列をプライマ一として用 レ T細胞 cDNAライブラリ一などの DNAを铸型として、プライマーに特異的なサ ィズの増幅産物が得られることを指標としてライブラリーをスクリーニングして cDNAの全長を取得する方法がある。 また、 「373」 由来の配列をプライマーとして 用い、 T細胞などの mRNAを一本鎖 cDNAに変換し、 末端にオリゴマーを付加して から PCRを行う RACE法(Frohman, M. A. et al .: Proc. Nat l . Acad. Sc i . USA, 85 : 8992, 1988) によって 「373」 の配列を延長する方法がある。 本発明におい て「配列番号: 2に記載のアミノ酸配列を含むタンパク質をコードする核酸分子」 には、 このようにして単離された全長 「373」 cDNAが含まれる。 さらに、 全長 「3 73」 cDNAが単離されれば、 これを適当な発現べクタ一に挿入して適当な宿主細胞 に導入し、 該細胞を培養し、 該細胞から発現させたタンパク質を回収することに より、該 cDNAがコードする組換えタンパク質を調製することができる。本発明に おいて 「配列番号: 2に記載のアミノ酸配列を含むタンパク質」 には、 このよう にして調製された全長 「373」 タンパク質が含まれる。 The nucleotide sequence of the “373” cDNA isolated by the present inventors is a partial distribution sequence of the “373” cDNA, and those skilled in the art may use the sequence information of the “373” cDNA described in SEQ ID NO: 1. On the other hand, isolation of the full-length cDNA of “373” can be usually performed. That is, a method for screening a T cell cDNA library or the like by hybridization using a sequence derived from “373” as a probe, or a method for screening a T cell cDNA library or the like using a sequence derived from “373” as a primer. There is a method in which a library is screened by using as an indicator that the amplification product of the size specific to the primer is obtained, and the full length of the cDNA is obtained. The RACE method (Frohman, MA et al .: Proc.) In which the mRNA derived from T cells is converted to single-stranded cDNA using a sequence derived from “373” as a primer, and oligomers are added to the ends before PCR Natl. Acad. Sc. USA, 85: 8992, 1988). In the present invention, the “nucleic acid molecule encoding a protein containing the amino acid sequence of SEQ ID NO: 2” includes the full-length “373” cDNA isolated in this manner. In addition, the total length "3 73 '' Once the cDNA is isolated, insert it into an appropriate expression vector, introduce it into an appropriate host cell, culture the cell, and recover the expressed protein from the cell, A recombinant protein encoded by the cDNA can be prepared. In the present invention, the “protein containing the amino acid sequence of SEQ ID NO: 2” includes the full-length “373” protein thus prepared.
「373」 は、 アトピー素因群 (スギ花粉に対する £値が3. 5 AU/ml以上) の方 がアトピー非素因群よりも有意に低い発現を示した。 従って、 「373」 の遺伝子の 発現 (mRNAへの転写およびタンパク質への翻訳を含む) を指標に、 アレルギー疾 患の検査およびアレルギー疾患治療薬候補化合物のスクリーニングを行うことが 可能であると考えられる。 “373” showed significantly lower expression in the atopic predisposition group (powder value for cedar pollen was 3.5 AU / ml or more) than in the non-atopic predisposition group. Therefore, it is thought that it is possible to conduct an allergic disease test and a screening of candidate compounds for a therapeutic drug for allergic diseases, using the expression of the “373” gene (including transcription into mRNA and translation into protein) as an index. .
本発明において検査 ·治療の対照となるアレルギー疾患としては、 特にスギ花 粉症が好ましい。 In the present invention, cedar pollinosis is particularly preferred as an allergic disease to be tested and treated.
本発明におけるアレルギー疾患の検査における「373」の遺伝子の発現の検出は、 「373」遺伝子にハイブリダィズする核酸をプローブとしたハイブリダィゼーショ ン技術、 または本発明の遺伝子にハイプリダイズする DNAをプライマーとした遺 伝子増幅技術を利用して行うことが可能である。 Detection of the expression of the “373” gene in the test for allergic disease according to the present invention can be performed by a hybridization technique using a nucleic acid that hybridizes to the “373” gene as a probe, or a DNA that hybridizes to the gene of the present invention. It can be carried out by using gene amplification technology as a primer.
本発明の検査に用いられるプロ一ブまたはプライマ一としては、 「373」 遺伝子 に特異的にハイプリダイズし、少なくとも 15ヌクレオチドの鎖長を有する核酸分 子が用いられる。 ここで 「特異的にハイブリダィズする」 とは、 通常のハイプリ ダイゼ一ション条件下、 好ましくはストリンジェントなハイブリダイゼーシヨン 条件下で、 他の遺伝子をコ一ドする MAおよびノまたは RNAとクロスハイブリダ ィゼーシヨンが有意に生じないことを指す。 たとえば、 Express Hybr i di zat i on So lut i on (CL0NTECH社製)中でプローブと転写膜を 68ででハイブリダィゼーショ ンし、 最終的に 0. 1 X SSC, 0. 05 % SDS溶液にて、 50でで洗浄することにより、 ストリンジェントな条件とすることができる。 As the probe or primer used in the test of the present invention, a nucleic acid molecule that specifically hybridizes to the “373” gene and has a chain length of at least 15 nucleotides is used. The term "specifically hybridizes" as used herein refers to the ability to cross-hybridize with MA and / or RNA or other genes encoding other genes under ordinary hybridization conditions, preferably under stringent hybridization conditions. It means that the dimensioning does not occur significantly. For example, the probe and the transfer membrane are hybridized at 68 in Express Hydridat on Solution (manufactured by CL0NTECH), and finally 0.1 X SSC, 0.05% SDS Stringent conditions can be achieved by washing with a solution at 50.
これら核酸分子は合成されたものでも天然のものでもよい。 また、 ハイブリダ ィゼ一シヨンに用いるプローブ DNAは、 通常、 標識したものが用いられる。 標識 としては、 例えば、 DNAポリメラーゼ 1を用いるニックトランスレーションによ る標識、 ポリヌクレオチドキナーゼを用いる末端標識、 クレノーフラグメントに よるフィルイン末端標識 (Berger SL, Kimmel AR. (1987) Guide to Molecular Cloning Techniques, Method in Enzymology, Academic Press ; Hames BD, Higg ins SJ (1985) Genes Probes: A Practical Approach. IRL Press ; Sambrook J, Fri tsch EF, Maniatis T. (1989) Molecular Cloning: a Laboratory Manual, 2nd Edn. Cold Spring Harbor Laboratory Press), RNAポリメラーゼを用いる転 写による標識 (Melton DA, Krieg, PA, Rebagkiati MR, Maniatis T, Zinn K, Gr een MR. (1984) Nucleic Acid Res., 12, 7035- 7056)、放射性同位体を用いない修 飾ヌクレオチドを DNAに取り込ませる方法 (Kricka LJ. (1992) Nonisotopic DN A Probing Techniques. Academic Press) 等が挙けられる。 These nucleic acid molecules may be synthetic or natural. Also, Hybrida Usually, a labeled DNA is used as the probe DNA used in the experiment. Labels include, for example, nick translation labeling using DNA polymerase 1, end labeling using polynucleotide kinase, fill-in labeling using Klenow fragment (Berger SL, Kimmel AR. (1987) Guide to Molecular Cloning Techniques , Method in Enzymology, Academic Press; Hames BD, Higg ins SJ (1985) Genes Probes: A Practical Approach. IRL Press; Sambrook J, Fritsch EF, Maniatis T. (1989) Molecular Cloning: a Laboratory Manual, 2nd Edn. Cold Spring Harbor Laboratory Press), Labeling by transcription using RNA polymerase (Melton DA, Krieg, PA, Rebagkiati MR, Maniatis T, Zinn K, Green MR. (1984) Nucleic Acid Res., 12, 7035-7056) And a method of incorporating a modified nucleotide without using a radioisotope into DNA (Kricka LJ. (1992) Nonisotopic DN A Probing Techniques. Academic Press).
ハイブリダィゼーシヨン技術を利用したアレルギ一疾患の検査は、 例えば、 ノ —ザンハイブリダィゼーシヨン法、 ドットブロット法、 DNAマイクロアレイを用 いた方法などを使用して行うことができる。 Testing of allergic diseases using the hybridization technique can be performed using, for example, a Northern hybridization method, a dot blot method, a method using a DNA microarray, and the like.
一方、 遺伝子増幅技術を利用した方法としては、 例えば、 RT- PCR法を用いるこ とができる。 RT-PCR法においては、 遺伝子の増幅過程において実施例 8に示すよ うに PCR増幅モニター法を用いれば、 「373」 遺伝子の発現のより正確な定量を行 うことができる。 On the other hand, as a method utilizing the gene amplification technique, for example, an RT-PCR method can be used. In the RT-PCR method, the expression of the “373” gene can be more accurately quantified by using a PCR amplification monitor method as shown in Example 8 in the process of gene amplification.
PCR遺伝子増幅モニター法においては、 両端に互いの蛍光を打ち消し合う異な つた蛍光色素で標識したプローブを用い、 検出対象 (DNAもしくは RNAの逆転写 産物)にハイプリダイズさせる。 PCR反応が進んで Taqポリメラ一ゼの 5' -3'ェク ソヌクレア一ゼ(exonuclease)活性により同プローブが分解されると二つの蛍光 色素が離れ、 蛍光が検出されるようになる。 この蛍光の検出をリアルタイムに行 う。 検出対象についてコピー数の明らかな標準試料について同時に測定すること により、 PCR増幅の直線性のあるサイクル数で目的試料中の検出対象のコピー数 を決定する (Holland, P.M. et al., 1991, Proc. Natl. Acad. Sci. USA 88:72 76-7280; Livak, K. J. et al. , 1995, PCR Methods and Applications 4(6) :35 7-362; Heid, C. A. et al. , Genome Research 6:986-994; Gibson, E. M. U. e t al., 1996, Genome Research 6:995-1001)。 PCR増幅モニター法においては、 例えば、 ABI PRISM7700 (パーキンエルマ一社) を用いることができる。 In the PCR gene amplification monitoring method, probes that are labeled with different fluorescent dyes at both ends to cancel each other's fluorescence are used to hybridize to the detection target (DNA or RNA reverse transcript). When the PCR reaction proceeds and the probe is degraded by the 5'-3 'exonuclease activity of Taq polymerase, the two fluorescent dyes are separated and the fluorescence is detected. This fluorescence is detected in real time. The number of copies of the target in the target sample can be determined at the same time as the number of cycles of PCR amplification by simultaneously measuring the standard sample whose copy number is clear for the target. (Holland, PM et al., 1991, Proc. Natl. Acad. Sci. USA 88:72 76-7280; Livak, KJ et al., 1995, PCR Methods and Applications 4 (6): 35 7- 362; Heid, CA et al., Genome Research 6: 986-994; Gibson, EMU et al., 1996, Genome Research 6: 995-1001). In the PCR amplification monitoring method, for example, ABI PRISM7700 (PerkinElmer) can be used.
また、 本発明のアレルギー疾患の検査は、 「373」 によりコードされるタンパク 質を検出することにより行うことも考えられる。 このような検査方法としては、 例えば、 「373」 によりコードされるタンパク質に結合する抗体を利用したウェス 夕ンブロッテイング法、 免疫沈降法、 ELISA法などを利用することができる。 本発明の「373」 によりコードされるタンパク質の抗体は、 当業者に周知の技法 を用いて、 ポリク口一ナル抗体またはモノクローナル抗体として得ることができ る (Milstein C, et al., 1983, Nature 305(5934): 537-40)。 抗原に用いるタン パク質もしくはその部分ペプチドは、例えば「373」遺伝子もしくはその一部を発 現ベクターに組込み、 これを適当な宿主細胞に導入して、 形質転換体を作成し、 該形質転換体を培養して組み換えタンパク質を発現させ、 発現させた組み換えタ ンパク質を培養体または培養上清から精製することにより得ることができる。 本発明によるアレルギー疾患の検査の結果、 本発明の遺伝子の発現が有意に低 ければ、被験者は例えばスギ花粉抗原のようなアレルゲンに対する IgE値が高く、 ァレルギ一素因を有すると判定することができる。 ァレルゲン特異的抗体価や、 症状などと併せて、 本発明の遺伝子の発現レベルの測定を、 アレルギー疾患の検 査に用いることが可能である。 In addition, the test for an allergic disease of the present invention may be performed by detecting the protein encoded by “373”. As such a test method, for example, a Western blotting method using an antibody that binds to the protein encoded by “373”, an immunoprecipitation method, an ELISA method, and the like can be used. Antibodies to the protein encoded by "373" of the present invention can be obtained as polyclonal antibodies or monoclonal antibodies using techniques well known to those skilled in the art (Milstein C, et al., 1983, Nature 305 (5934): 537-40). The protein or its partial peptide to be used as an antigen is, for example, a 373 gene or a part thereof is incorporated into an expression vector, and this is introduced into an appropriate host cell to prepare a transformant. Is cultured to express a recombinant protein, and the expressed recombinant protein is purified from a culture or a culture supernatant. As a result of the test of the allergic disease according to the present invention, if the expression of the gene of the present invention is significantly low, the subject can be determined to have a high allergen such as cedar pollen antigen and to have an allergic predisposition. . The measurement of the expression level of the gene of the present invention in combination with the allergen-specific antibody titer, symptoms, and the like can be used for examination of allergic diseases.
T細胞に発現する 「373」遺伝子は花粉抗原に対する特異的 IgEの高い、 花粉症 患者群において発現が低下している。 スギ花粉以外の抗原に対する応答性を示す アレルギー患者においても、 当該抗原に対する T細胞の応答性の亢進している状 態で 「373」遺伝子の発現が低下する可能性がある。 このようなケースでは「373」 遺伝子の発現低下が T細胞の応答性の亢進に対応しており、従って「373」遺伝子 の発現をモニターすることによってアレルギー疾患治療薬のスクリーニングを行 うことができる。 The “373” gene expressed in T cells has high IgE specific to pollen antigens, and its expression is reduced in hay fever patients. Even in an allergic patient who exhibits responsiveness to an antigen other than cedar pollen, the expression of the “373” gene may be reduced while T cell responsiveness to the antigen is enhanced. In such cases, decreased expression of the “373” gene corresponds to increased T cell responsiveness, By monitoring the expression of the drug, screening for therapeutic drugs for allergic diseases can be performed.
本発明のアレルギー疾患治療候補化合物のスクリーニング方法は、 in vivo で 行なうことも in vi t roで行なうこともできる。 in vivoでのスクリーニングにお いては、 例えば、 マウス等のモデル動物に、 候補薬剤の投与および花粉抗原での 刺激を行った後、 末梢血より T細胞を分離し、 「373」 の転写産物を測定する。 あ るいは、 マウス等のモデル動物に候補薬剤を投与した後、 末梢血よりリンパ球を 分離し、該リンパ球をスギ花粉抗原等で in vi troで刺激する。該刺激後のリンパ 球から T細胞を分離し、 その 「373」遺伝子の転写産物を測定する。 これら測定の 結果、 「373」 遺伝子の転写量を増大させる化合物を選択する。 ここで花粉抗原に よる刺激は、 T細胞において抗原特異的なアレルギー反応を惹起し、 それに対す る候補化合物の治療効果を判定することを目的として行うものである。 The method for screening a candidate compound for treating an allergic disease of the present invention can be performed in vivo or in vitro. For in vivo screening, for example, after administering a candidate drug and stimulating with a pollen antigen to a model animal such as a mouse, T cells are separated from peripheral blood, and a transcript of “373” is obtained. Measure. Alternatively, after administering a candidate drug to a model animal such as a mouse, lymphocytes are separated from peripheral blood, and the lymphocytes are stimulated in vitro with cedar pollen antigen or the like. T cells are separated from the lymphocytes after the stimulation, and the transcript of the “373” gene is measured. As a result of these measurements, compounds that increase the transcription level of the “373” gene are selected. Here, the stimulation with the pollen antigen is performed for the purpose of inducing an antigen-specific allergic reaction in T cells and determining the therapeutic effect of the candidate compound on it.
また、 in vi troでのスクリーニングにおいては、 例えば、 花粉症のヒトまたは マウス等から末梢血リンパ球を採取し、 スギ花粉抗原で、 該末梢血リンパ球を in vi troで刺激する。 in vi tro刺激の際に候補化合物を添加する。その後、刺激さ れた末梢血リンパ球から T細胞を分離し、 「373」 の転写産物を測定する。 この測 定の結果、 「373」 遺伝子の転写量を増大させる化合物を選択する。 In the in vitro screening, for example, peripheral blood lymphocytes are collected from hay fever humans or mice, and the peripheral blood lymphocytes are stimulated in vitro with cedar pollen antigen. Candidate compounds are added during in vitro stimulation. The T cells are then isolated from the stimulated peripheral blood lymphocytes and the transcript of “373” is measured. As a result of this measurement, a compound that increases the transcription amount of the “373” gene is selected.
また、 本発明のアレルギー疾患治療候補化合物のスクリーニングは、 株化 T細 胞を用いて行なうこともできる。 例えば、 Mol t4細胞、 Jurkat細胞などの株化 T 細胞をリンパ球刺激物質で in vi troで刺激する。 リンパ球刺激物質としては、例 えば、 カルシウムィオノフォア (A23187)、 PMA、 フィトへマグルチニン (PHA) な どが挙げられる。 in vi tro刺激の際に候補薬剤を添加する。 その後、 該株化 T細 胞における 「373」遺伝子の転写量を測定する。 この測定の結果、 「373」遺伝子の 転写を増大させる化合物を選択する。 Screening of the candidate compound for treating an allergic disease of the present invention can also be performed using established T cells. For example, established T cells such as Molt4 cells and Jurkat cells are stimulated in vitro with a lymphocyte stimulator. Examples of lymphocyte stimulants include calcium ionophore (A23187), PMA, phytohemagglutinin (PHA), and the like. Add candidate drugs during in vitro stimulation. Thereafter, the transcription amount of the “373” gene in the established T cells is measured. As a result of this measurement, a compound that increases the transcription of the “373” gene is selected.
アレルギー疾患治療候補化合物のスクリーニングにおける「373」の遺伝子の発 現の検出は、 本発明のアレルギー疾患の検査と同様、 「373」 遺伝子に八イブリダ ィズする核酸をプローブとしたハイブリダィゼーション技術、 または本発明の遺 伝子にハイプリダイズする DNAをプライマーとした遺伝子増幅技術を利用して行 うことが可能である。 Detection of the expression of the “373” gene in the screening of candidate compounds for the treatment of allergic diseases is carried out by the same method as the test for allergic diseases of the present invention. The hybridization can be carried out using a hybridization technique using a nucleic acid to be probed, or a gene amplification technique using a DNA that hybridizes to the gene of the present invention as a primer.
ハイブリダィゼ一シヨン技術を利用した方法としては、 例えば、 ノーザンハイ ブリダイゼ一ション法、 ドットプロット法、 DNAマイクロアレイを用いた方法な どを使用して行うことができる。一方、遺伝子増幅技術を利用した方法としては、 RT - PCR法を用いることができる。 RT- PCR法においては、遺伝子の増幅過程におい て実施例 8に示すような PCR増幅モニター法を用いれば、 「373」 遺伝子の発現の より正確な定量を行うことができる。 As a method using the hybridization technology, for example, a Northern hybridization method, a dot plot method, a method using a DNA microarray, or the like can be used. On the other hand, as a method utilizing the gene amplification technique, an RT-PCR method can be used. In the RT-PCR method, more accurate quantification of the expression of the “373” gene can be performed by using a PCR amplification monitor method as shown in Example 8 in the gene amplification process.
これらスクリーニングに用いる被検化合物としては、 ステロイド誘導体等既存 の化学的方法により合成された化合物標品、 コンビナトリアルケミストリ一によ り合成された化合物標品のほか、 動 ·植物組織の抽出物もしくは微生物培養物等 の複数の化合物を含む混合物、またそれらから精製された標品などが挙げられる。 本発明のアレルギー疾患治療薬候補化合物のスクリーニング方法により単離さ れる化合物は、 花粉抗原等のアレルゲンに対するアレルギー素因を改善する薬剤 の候補になる。 The test compounds used in these screenings include compound samples synthesized by existing chemical methods such as steroid derivatives, compound samples synthesized by combinatorial chemistry, extracts of animal and plant tissues, and microorganisms. A mixture containing a plurality of compounds such as a culture, a sample purified from them, and the like can be mentioned. The compound isolated by the method for screening a candidate compound for a therapeutic drug for an allergic disease of the present invention is a candidate for a drug which improves allergic predisposition to an allergen such as a pollen antigen.
本発明のスクリーニング方法により単離される化合物を、 医薬品として用いる 場合には、 公知の製剤学的製造法により製剤化して用いることが可能である。 例 えば、 薬理学上許容される担体または媒体 (生理食塩水、 植物油、 懸濁剤、 界面 活性剤、 安定剤など) とともに患者に投与される。 投与は、 化合物の性質に応じ て、 経皮的、 鼻腔内的、 経気管支的、 筋内的、 静脈内、 または経口的に行われる。 投与量は、 患者の年齢、 体重、 症状、 投与方法などにより変動するが、 当業者で あれば適宜適当な投与量を選択することが可能である。 When the compound isolated by the screening method of the present invention is used as a pharmaceutical, it can be used as a pharmaceutical preparation by a known pharmaceutical production method. For example, it is administered to a patient together with a pharmacologically acceptable carrier or vehicle (such as saline, vegetable oils, suspensions, surfactants, stabilizers, etc.). Administration will be transdermal, intranasal, transbronchial, intramuscular, intravenous, or oral, depending on the nature of the compound. The dose varies depending on the patient's age, body weight, symptoms, administration method and the like, but those skilled in the art can appropriately select an appropriate dose.
なお、 本発明のスクリーニングは、 「373」 の遺伝子の発現を検出することによ り実施する以外に、 「373」 タンパク質の発現を検出することによつても実施する ことが考えられる。 すなわち、 前述の 「373」遺伝子を指標とするスクリーニング 方法における 「373」遺伝子に代えて、 「373」 タンパク質を指標とすれば良いので ある。 この場合、 「373」 タンパク質の発現の検出は、 一般に 「373」 タンパク質に 結合する抗体を利用して行なう。 The screening of the present invention may be carried out by detecting the expression of the “373” protein in addition to detecting the expression of the “373” gene. That is, screening using the aforementioned “373” gene as an index Instead of using the “373” gene in the method, the “373” protein may be used as an index. In this case, the detection of the expression of the “373” protein is generally performed using an antibody that binds to the “373” protein.
このスクリーニングは、 たとえば、 (a ) 被験者から T細胞を調製する工程、 ( b )該 T細胞からタンパク質試料を調製する工程、 (c )該タンパク質試料中の 「373」 タンパク質を、該タンパク質に結合する抗体を用いて検出する工程、 (d ) 対照 (被検化合物非投与の場合) と比較して、 該タンパク質の検出量を増大させ る化合物を選択する工程、 を含む方法により実施することもできる。 This screening includes, for example, (a) a step of preparing T cells from a subject, (b) a step of preparing a protein sample from the T cells, and (c) binding of “373” protein in the protein sample to the protein. (D) selecting a compound that increases the amount of the protein to be detected as compared to a control (in the case where the test compound is not administered). it can.
また、 ( a )花粉症のモデル動物に被検化合物の投与および花粉抗原による刺激 を行う工程、 (b ) 該モデル動物から T細胞を調製する工程、 (c ) 該 T細胞から タンパク質試料を調製する工程、 (d ) 該タンパク質試料中の 「373」 タンパク質 を、該タンパク質に結合する抗体を用いて検出する工程、 (e )対照(被検化合物 非投与の場合) と比較して、 該タンパク質の検出量を増大させる化合物を選択す る工程、 を含む方法により実施することができる。 In addition, (a) a step of administering a test compound to a model animal of hay fever and stimulating it with a pollen antigen, (b) a step of preparing T cells from the model animal, (c) preparing a protein sample from the T cells (D) detecting "373" protein in the protein sample using an antibody that binds to the protein; (e) comparing the control (when no test compound is administered) with the protein A step of selecting a compound that increases the detection amount of the compound.
このスクリーニングに用いる 「373」 タンパク質に結合する抗体は、 公知の方法 により調製することができる。 例えば、 本発明のタンパク質に対するポリクロー ナル抗体は、 抗原を感作した哺乳動物の血液を取り出し、 この血液から公知の方 法により血清を分離する。 ポリクロ一ナル抗体としては、 ポリクローナル抗体を 含む血清を使用してもよいし、 必要に応じこの血清からポリクローナル抗体を含 む画分をさらに単離して、 これを使用してもよい。 また、 モノクローナル抗体を 得るには、 上記抗原を感作した哺乳動物から免疫細胞を取り出し、 細胞融合に付 して、 ハイプリドーマを調製し、 該ハイブリドーマに生産させた抗体を調製すれ ばよい。 An antibody that binds to the “373” protein used in this screening can be prepared by a known method. For example, a polyclonal antibody against the protein of the present invention is obtained by extracting blood of a mammal sensitized with an antigen and separating serum from the blood by a known method. As the polyclonal antibody, a serum containing the polyclonal antibody may be used. If necessary, a fraction containing the polyclonal antibody may be further isolated from this serum and used. In order to obtain a monoclonal antibody, an immune cell may be obtained from a mammal sensitized with the above antigen, subjected to cell fusion to prepare a hybridoma, and an antibody produced by the hybridoma may be prepared.
「373」 タンパク質の検出の際には、 この抗体を適宜標識して用いればよい。 ま た、 この抗体を標識せずに、 該抗体に特異的に結合する物質、 例えば、 プロティ ン Aやプロテイン Gを標識して検出してもよい。 具体的な検出方法としては、 例 えば、 EL I SA法を用いることができる。 図面の簡単な説明 When detecting the “373” protein, the antibody may be appropriately labeled and used. Further, without labeling the antibody, a substance that specifically binds to the antibody, for example, protein A or protein G may be labeled and detected. Examples of specific detection methods include: For example, the ELISA method can be used. BRIEF DESCRIPTION OF THE FIGURES
図 1は、 血液を採取した被験者 10人、 計 18の血液試料におけるスギ花粉特異 的 IgE抗体の抗体価を表す図である。 被験者 A〜〗 (試料番号 1〜18) の各血液試 料のスギ花粉特異的 IgE抗体の値を AU/mlで表した。 花粉飛散前を左 (白いカラ ム)、 飛散後を右 (黒いカラム) に対で表した。 被験者 Aおよび Bは、 花粉飛散後 の血液のみ採取した。 FIG. 1 is a diagram showing the antibody titers of cedar pollen-specific IgE antibodies in a total of 18 blood samples from 10 subjects who collected blood. The value of cedar pollen-specific IgE antibody in each blood sample of subjects A to〗 (sample numbers 1 to 18) was expressed in AU / ml. The pair before pollen scattering is shown on the left (white column), and the one after scattering is shown on the right (black column). Subjects A and B collected only blood after pollen scattering.
図 2は、 スギ花粉特異的 I gE値によつて群分けした場合の高 I gE群および正常 IgE群における 「373」 の発現変化を示す図である。 エラーバーは標準偏差を表す。 図 3は、 スギ花粉飛散時期前後によって群分けした場合の飛散前群および飛散 後群における 「373」 の発現変化を示す図である。 エラーバーは標準偏差を表す。 図 4は、 各種癌細胞株から調製した mRNAを用いて 「373」 のノーザンハイプリ ダイゼ一ションを行った結果を示す写真である。 発明を実施するための最良の形態 FIG. 2 is a graph showing changes in expression of “373” in a high IgE group and a normal IgE group when grouped according to cedar pollen-specific IgE values. Error bars represent standard deviation. FIG. 3 is a diagram showing changes in the expression of “373” in the pre-scattering group and the post-scattering group when grouping was performed before and after the cedar pollen scattering time. Error bars represent standard deviation. FIG. 4 is a photograph showing the results of Northern hybridization of “373” using mRNAs prepared from various cancer cell lines. BEST MODE FOR CARRYING OUT THE INVENTION
以下、 本発明を実施例により具体的に説明するが、 本発明はこれら実施例に制 限されるものではない。 Hereinafter, the present invention will be described specifically with reference to Examples, but the present invention is not limited to these Examples.
[実施例 1 ] 10人の成人ポランティアからの血液採取 [Example 1] Blood collection from 10 adult volunteers
花粉飛散前後の T細胞を採取するため、成人ポランティア 10名(A〜; から 10 mlの血液サンプルを、 花粉飛散前および花粉飛散後に採取した。 最初の血液サン プルは、 日本のスギ花粉飛散の季節の前(1997年 1月および 2月)に採取し、 2回 目は日本のスギ花粉飛散後(1997年 3、 4および 5月)に採取した。 ポランティア のうち 8人については、 2つの時期のサンプルを得た。 残る 2名のポランティア に関しては、 花粉飛散後のサンプルのみ入手できた。 これらの血液サンプルの一 部を用いて、 スギ花粉特異的 IgEの量を測定した。 特異的 IgEの測定はペーパー ディスクを固相とする RAST法(radio allergo sorbent test, Wide, L. et, al.: Lancet 2: 1105-1107, 1967) を改良した CAP RAST法 (Pharmacia社) により行 つた。 Pharmacia社製の標準の抗体価を含む血清を用いて、 それを基準にしてそ れぞれの検体の IgE抗体価 (単位は Pharmacia RAST Unit, PRU、 あるいは AU (a rbitrary unit) とも表示する) を決定した。 To collect T cells before and after pollen dispersal, 10 ml of blood samples were collected from 10 adult volunteers (A ~; before and after pollen dispersal. The first blood sample was collected from Japanese cedar pollen dispersal. Samples were collected before the season (January and February 1997), and the second after the Japanese cedar pollen was dissipated (March, April and May 1997). For the remaining two volunteers, only samples obtained after pollen dispersal were available, and a portion of these blood samples was used to measure the amount of cedar pollen-specific IgE. Measurement of paper The RAP method (radio allergo sorbent test, Wide, L. et. Al., Lancet 2: 1105-1107, 1967) using a disk as a solid phase was carried out by a modified CAP RAST method (Pharmacia). Using a serum containing a standard antibody titer manufactured by Pharmacia, and using that as a reference, the IgE antibody titer of each sample (the unit is also indicated as Pharmacia RAST Unit, PRU, or AU (arbitrary unit)) It was determined.
測定された各被験者における花粉飛散前後でのスギ花粉特異的 IgE値を図 1に 示す。 図に示されるように、 10人の被験者の大半で、 花粉被曝後にスギ花粉特異 的 IgEの血清中の濃度が増加した。 アトピー素因を有するかどうかは、 スギ花粉 特異的 IgEの CAP RAST試験の値が 2より大きいかどうかで判断した。すなわち、 被験者 A〜Gおよび Iの 8人の被験者をアトピー素因群(以後「患者」 とも記す)、 被験者 H、 】の 2人を健常者 (以後 「正常群」 とも記す) とした。 8人のアトピー 素因を有する被験者のうち 7人が、 花粉飛散後にアレルギー性鼻炎の症状を示し た。 Fig. 1 shows the measured cedar pollen-specific IgE values before and after pollen scattering in each subject. As shown, most of the 10 subjects had increased serum levels of cedar pollen-specific IgE after pollen exposure. The presence of atopic predisposition was determined by whether the value of the CAP RAST test for cedar pollen-specific IgE was greater than 2. That is, eight subjects A to G and I were regarded as atopic predisposition group (hereinafter also referred to as “patient”), and two subjects, subjects H and, were regarded as healthy subjects (hereinafter also referred to as “normal group”). Of the eight subjects with an atopic predisposition, seven exhibited symptoms of allergic rhinitis after pollen dispersal.
[実施例 2 ] 血液試料からのリンパ球画分の調製 [Example 2] Preparation of lymphocyte fraction from blood sample
血液 10 mlから T細胞を調製する場合は、 以下のようにした。 まずノポ社製等 のへパリン 1 mlで注射筒壁を万遍なく処理し、 最終濃度 50 unit/mlのへパリン を含む 10 ml注射筒に採血した。 このとき一人の採血に 22G針を 2本準備した。 注射針をはずし、 50 mlの遠心チューブ (ポリプロピレン製) に移した。 1500 rp m、 室温で 5分間遠心し、 できるだけ表面近くから 1.1 ml を採取し、 15000 rpm で 5分間、 4でで遠心して上清 1 mlを血漿(plasma)として回収した。 血漿を回収 した残りに 3%のデキストラン(ナカライ社製)を含む 0.9% NaClを等量(9 ml) 加え、 静かに数回転倒させて混和した。 その後 30分間室温で静置した。 PRP(Pla telet rich plasma,血小板に富む血漿)を別の 15 ml遠心チューブに移し、 1200 rpm (トミー社製の遠心機で 150Xgに相当する) で 5分間、 室温で遠心した。 遠 心後、 血小板は上清にあった。 沈殿した細胞をギブコ社等から入手した Ca、 Mg 不含の HBSS 5 mlに懸濁した。 これを、 パスツールピペットを用いて Ficol Paqu e (フアルマシア社製)が 5 mlが入ったチューブ(ファルコンチューブ: 2006また は 2059;ポリプロピレン製) 1本に上層した。 1200 rpmで 5分間遠心後、 1500 rpm (Tomy社製の遠心機で 400Xgに相当する) で 30分間室温で遠心した。 その 結果、 顆粒細胞(granulocyte), 赤血球(erythrocyte)が沈殿し、 フイコール層を 挟んで中間層にリンパ球 ( 1 ymphocyt e)、 単球 (monocy t e)、 血小板(p 1 a t e 1 e t )が含 まれた。 When preparing T cells from 10 ml of blood, the procedure was as follows. First, the wall of the syringe was uniformly treated with 1 ml of Heparin from Nopo, etc., and blood was collected in a 10 ml syringe containing a final concentration of 50 unit / ml heparin. At this time, two 22G needles were prepared for one blood sample. The injection needle was removed and transferred to a 50 ml centrifuge tube (made of polypropylene). After centrifugation at 1500 rpm for 5 minutes at room temperature, 1.1 ml was collected from the surface as close as possible, and centrifuged at 15000 rpm for 5 minutes and at 4 to collect 1 ml of the supernatant as plasma. An equal volume (9 ml) of 0.9% NaCl containing 3% dextran (manufactured by Nacalai) was added to the rest of the collected plasma, and the mixture was gently inverted several times to mix. Then, it was left still at room temperature for 30 minutes. PRP (Pla teletrich plasma, platelet-rich plasma) was transferred to another 15 ml centrifuge tube and centrifuged at 1200 rpm (equivalent to 150 Xg in a Tommy centrifuge) for 5 minutes at room temperature. After centrifugation, platelets were in the supernatant. The precipitated cells were suspended in 5 ml of Ca- and Mg-free HBSS obtained from Gibco or the like. This is applied to Ficol Paqu using a Pasteur pipette. e (manufactured by Pharmacia Co.) was overlaid on one tube (Falcon tube: 2006 or 2059; made of polypropylene) containing 5 ml. After centrifugation at 1200 rpm for 5 minutes, the mixture was centrifuged at 1500 rpm (equivalent to 400 Xg in a Tomy centrifuge) for 30 minutes at room temperature. As a result, granulocytes and erythrocytes precipitate, and lymphocytes (1 ymphocyte), monocytes (monocyte), and platelets (p1ate1et) are contained in the middle layer with the ficoll layer in between. Mareta.
パスツールピペットで中間層を回収し、 2〜3倍の容量の BSA/PBS(0.5% BSA, 2 mM EDTA in PBS, pH7.2;使用直前に脱気した)を添加し、 1200 rpm, 4でで 5分 間遠心した。 沈殿を回収し、 BSA/PBSで 2回洗浄した。 2回目の洗浄後、 細胞を 5 ml に懸濁し、 その一部をトリパンブルーで 2倍に希釈して細胞数を測定した。 全細胞数は約 1X107であった。 これをリンパ球画分とした。 Collect the middle layer with a Pasteur pipette, add 2 to 3 volumes of BSA / PBS (0.5% BSA, 2 mM EDTA in PBS, pH 7.2; degas immediately before use), and add 1200 rpm, 4 rpm. And centrifuged at for 5 minutes. The precipitate was collected and washed twice with BSA / PBS. After the second washing, the cells were suspended in 5 ml, and a part thereof was diluted 2-fold with trypan blue, and the number of cells was counted. Total cell number was approximately 1 × 10 7 . This was used as the lymphocyte fraction.
[実施例 3] リンパ球画分からの T細胞の分離 [Example 3] Separation of T cells from lymphocyte fraction
実施例 2で得たリンパ球画分を 1200 rpmで 4で、 5分間遠心し、 100 1あたり 108になるように BSA/PBSに懸濁した。容量は約 20 1になった。 これをエツペン ドルフチューブ (1.5 ml) に移し、 CD3マイクロビーズ液を添加した。 その後、 3 0分間 4〜10でに放置した (このとき氷上には置かなかった)。 この試料をマグネ チックセルソー夕一(MACS) (Miltenyi Biotech Inc.製)で以下のように処理した。 The lymphocyte fraction obtained in Example 2 was centrifuged at 1200 rpm at 4 for 5 minutes, and suspended in BSA / PBS at 10 8 per 100 1. The capacity became about 201. This was transferred to an Eppendorf tube (1.5 ml), and the CD3 microbead solution was added. After that, it was left at 4-10 for 30 minutes (it was not placed on ice at this time). This sample was treated with a magnetic cell saw Yuichi (MACS) (manufactured by Miltenyi Biotech Inc.) as follows.
MS+/RS+カラムを Mini MACSまたは Vario MACSセパレーションュニットに装着 した (針は付けなかった)。 500 1の BSA/PBSをカラムに静かにアプライし、 バ ッファーは流し出した。 次に CD3マイクロビーズ標識した細胞をカラムにァプラ ィした。 カラムを 500 ilで 3回洗浄した (B細胞画分)。 カラムをセパレーショ ンユニットからはずし、 溶出液を集めるチューブ上に置いた。 1 mlの BSA/PBSを カラムにアプライし、 力ラム添付のプランジャーを用いポジティブ細胞を急速に 流し出した。 これを T細胞画分とした。 The MS + / RS + column was attached to a Mini MACS or Vario MACS separation unit (without needles). 500 1 of BSA / PBS was gently applied to the column and the buffer was drained. Next, cells labeled with CD3 microbeads were applied to the column. The column was washed three times with 500 il (B cell fraction). The column was removed from the separation unit and placed on a tube for collecting the eluate. 1 ml of BSA / PBS was applied to the column, and positive cells were rapidly flushed out using a plunger attached to the force column. This was used as the T cell fraction.
得られた T細胞画分について、 1200 rpm, 5分間 4tで遠心した。 沈殿を BSA/P BSで 1回洗浄した。 2回目の洗浄後、 細胞を 1 mlに懸濁し、その一部をトリパン ブルーで 2倍に希釈して細胞数を測定した。 全細胞数は約 4X 106であった。 The obtained T cell fraction was centrifuged at 1200 rpm for 5 minutes at 4t. The precipitate was washed once with BSA / PBS. After the second wash, resuspend the cells in 1 ml and aliquot The number of cells was measured by diluting with blue two-fold. The total cell number was about 4 × 10 6 .
[実施例 4 ] T細胞からの全 RNAの調製 [Example 4] Preparation of total RNA from T cells
T細胞からの全 RNAの調製は RNeasy Mini (Qi agen製) を用い、 原則として添 付のマニュアルに従い行った。 操作はすべて手袋を着用して、 室温で行った。 ま たゥォッシュバッファー RPEに 4倍量のエタノールを加えた。 リシスバッファー R LTには lO l/mlの 2-メルカプトエタノールを加えた。細胞浮遊液を 1000〜1200 rpmで 5分間遠心し、 上清をァスピレ一ションで除いた。 沈殿に 350 1のリシ スバッファー RLT (2-メルカプトエタノールを含む)溶液を加えた。 この段階で、 R LTバッファ一中の細胞のライセートは、 -70でで保存可能であった。 細胞のライ セートを冷凍保存していた場合は、 37でで 10〜15分間インキュベートして、不溶 物が見えるようなら最大速度で 3分間遠心し、 上清のみを回収した。 このライセ —トを 20Gの力テラン針を付けた注射筒でホモゲナイズ後、 キアシュレツダ一 (Q IAshredder)で処理した。 (即ち、通常 350 1の細胞のライセ一トをキアシュレツ ダ一ュニットにピぺットマンを用いてアプライした。これを 1500 rpmで 2分間遠 心し、 流出液を回収した。) 350 1の 70%エタノールを加え、 ピペッティングし てよく混ぜた。 RNeasyスピンカラムを添付の 2 mlチューブに装着し、 細胞のラ イセート混合物をアプライし、 8000 Xg(11500 rpm)で 1分間遠心し、 流出液は捨 てた。 ゥォッシュバッファ一 RW1 700 1をカラムにアプライし、 5分間フタをし た形で立てた。 11500 rpmで 15秒間遠心し、 流出液は捨てた。 カラムを新しい 2 ml チューブに装着し、 ゥォッシュバッファー RPE (エタノールを含む) 500 1 をカラムにアプライした後、 11500 rpmで 15秒間遠心し、 流出液は捨てた。 ゥォ ッシュバッファ一 RPE 500 1をカラムにアプライし、最大速度で 2分間遠心した。 カラムを新しい 1. 5 mlチューブに装着し、 DEPC処理した水 30 μ 1をアプライし、 フタをして 10分間立てた。 11500 rpmで 10分間遠心し、 全 RNAを得た。 濃度を 測定し、 量が少ないようなら、 再度カラムを新しい 1. 5 mlチューブに装着し、 D EPC処理した水 30 1 をアプライし、 フタをして 10分間立て、 11500 i"pmで 10 分間遠心した。 Preparation of total RNA from T cells was performed using RNeasy Mini (manufactured by Qiagen) according to the attached manual in principle. All operations were performed at room temperature, wearing gloves. Four volumes of ethanol were added to Posh Buffer RPE. The lysis buffer RLT was supplemented with 10 l / ml 2-mercaptoethanol. The cell suspension was centrifuged at 1000-1200 rpm for 5 minutes, and the supernatant was removed by aspiration. To the precipitate was added 350 1 lysis buffer RLT (containing 2-mercaptoethanol) solution. At this stage, lysates of cells in RLT buffer could be stored at -70. If the cell lysate was stored frozen, incubate at 37 for 10-15 minutes, and centrifuge for 3 minutes at maximum speed if insolubles were visible, collecting only the supernatant. The lysate was homogenized with a syringe equipped with a 20 G force terran needle and then treated with Q IAshredder. (That is, usually, a lysate of 3501 cells was applied to a Kyaschlets unit using a Pitman. This was centrifuged at 1500 rpm for 2 minutes, and the effluent was collected.) 70% of 3501 Ethanol was added and mixed well by pipetting. The RNeasy spin column was attached to the attached 2 ml tube, the lysate mixture of cells was applied, centrifuged at 8000 Xg (11500 rpm) for 1 minute, and the effluent was discarded. Posh buffer RW1 700 1 was applied to the column, and it was put upright for 5 minutes. The mixture was centrifuged at 11,500 rpm for 15 seconds, and the effluent was discarded. The column was placed in a new 2 ml tube, and Posh buffer RPE (containing ethanol) 500 1 was applied to the column. The mixture was centrifuged at 11,500 rpm for 15 seconds, and the effluent was discarded. Wash buffer RPE 500 1 was applied to the column and centrifuged at maximum speed for 2 minutes. The column was placed in a new 1.5 ml tube, 30 μl of DEPC-treated water was applied, and the lid was capped and allowed to stand for 10 minutes. After centrifugation at 11,500 rpm for 10 minutes, total RNA was obtained. Measure the concentration, and if the volume is low, re-attach the column to a new 1.5 ml tube, apply D EPC-treated water 30 1, cap the lid, stand for 10 minutes, and set the column at 11500 i "pm. Centrifuge for minutes.
[実施例 5 ] 全 RNAの DNas e処理 [Example 5] DNase treatment of total RNA
T細胞から調製した全 RNAから DNAを除くため、 DNase処理を行った。反応は 2 ユニットの DNase (二ツボンジーン社) および 50ユニットの RNaseインヒビ夕一 (フアルマシア社) を含む 100/ lの lXDNaseバッファ一 (二ツボンジーン社) 中で行った。これを 37 i5分間インキュベートした後、等量の PCI (フエノール: クロ口ホルム:イソアミルアルコール = 25:24:1)を加え、 ポルテックスした。 12 000 rpmで室温、 10分間遠心し、 上層 (水層) を新しい 1.5 mlチューブに移した。 1/10量の 3M酢酸ナトリウム(pH 5.2)を加え、 2.5倍量の 100%エタノールおよび エタ沈メイト 1^1を加えて、 転倒混和させた。 - 20でで 15分間静置させた後、 1 2000 rpmで 4で、 15分間遠心し、 上清を除去し、 70%エタノールを加えた。 沈殿 がはがれる程度にタッピングした後、 上清をきれいに除去した。 3分間乾燥させ、 10〜20 1の DDW (DNaseおよび RNase不含) に溶解させた。 濃度を測定し、 使用 まで - 80でに保存した。 DNase treatment was performed to remove DNA from total RNA prepared from T cells. Reactions were performed in 100 l lXDNase buffer (Futsuba Gene) containing 2 units of DNase (Futsuba Gene) and 50 units of RNase Inhibitor Yuichi (Pharmacia). After incubating this for 37 i5 minutes, an equal volume of PCI (phenol: black form: isoamyl alcohol = 25: 24: 1) was added, and the mixture was portexed. The mixture was centrifuged at 12,000 rpm at room temperature for 10 minutes, and the upper layer (aqueous layer) was transferred to a new 1.5 ml tube. One-tenth volume of 3M sodium acetate (pH 5.2) was added, and 2.5 volumes of 100% ethanol and eta-precipitated mate 1 ^ 1 were added and mixed by inversion. After leaving at −20 for 15 minutes, the mixture was centrifuged at 12,000 rpm at 4 for 15 minutes, the supernatant was removed, and 70% ethanol was added. After tapping to the extent that the precipitate was detached, the supernatant was removed cleanly. It was dried for 3 minutes and dissolved in 10-201 DDW (containing no DNase and RNase). The concentration was measured and stored at -80 until use.
[実施例 6] T細胞から調製した全 RNAを用いたディファレンシャルディスプ レイ (DD) 解析 [Example 6] Differential display (DD) analysis using total RNA prepared from T cells
T細胞から調製した全 RNAを用いた蛍光ディファレンシャルディスプレイ (F1 uorescent Differential Display, 「DD」 と略記する) 解析は文献 (T.Itoら, 19 94, FEBS Lett. 351: 231-236)に記載の方法に準じて行った。 T細胞から調製し た全 RNAを逆転写し、 cDNAを得た。 第一次 DD- PCR反応用には 3種のアンカープ ライマ一の各々について全 RNAの各 0.2 gを用いて cDNAを調製した。第二次 DD - PCR反応用には、 3種のアンカープライマーの各々について RNA 0.4//gを用い て cDNAを調製した。 いずれの cDNAも、 0.4ng/ 1 RNA相当の最終濃度に希釈し、 実験に用いた。 1反応あたり lng RNA相当の cDNAを用いて DD-PCR反応を行った。 反応液の組成は表 1の通りである。 cDNA(0.4ng/ 1 RNA相当) 2.5 1 Fluorescent differential display (F1 uorescent Differential Display, abbreviated as “DD”) using total RNA prepared from T cells is described in the literature (T. Ito et al., 1994, FEBS Lett. 351: 231-236). Performed according to the method. Total RNA prepared from T cells was reverse transcribed to obtain cDNA. For the primary DD-PCR reaction, cDNA was prepared using 0.2 g of total RNA for each of the three anchor primers. For the secondary DD-PCR reaction, cDNA was prepared using 0.4 // g RNA for each of the three anchor primers. All cDNAs were diluted to a final concentration of 0.4 ng / 1 RNA and used in the experiments. A DD-PCR reaction was performed using cDNA equivalent to lng RNA per reaction. Table 1 shows the composition of the reaction solution. cDNA (0.4 ng / 1 RNA equivalent) 2.5 1
任意プライマー (2 /M) 2.5^1 Optional primer (2 / M) 2.5 ^ 1
lOXAmpliTaq PCRバッファ- 1.0^1 lOXAmpliTaq PCR buffer-1.0 ^ 1
2.5mM dNTP 0.8^1 2.5mM dNTP 0.8 ^ 1
50/xM アンカ一プライマー 50 / xM anchor primer
(GT15A, GT15C, GT15G) (GT15A, GT15C, GT15G)
Gene Taq (5U 1) 0.05^1 Gene Taq (5U 1) 0.05 ^ 1
Am liTaq (5U/ t 1) 0.05^1 Am liTaq (5U / t 1) 0.05 ^ 1
dH20 3.0^1 dH 2 0 3.0 ^ 1
IO.O I IO.O I
PCRの反応条件は、 「95 3分、 40で5分、 72で5分」 を 1サイクル、 続いて、 「9 4Π5秒、 40で2分、 72で 1分」を 30サイクルの後、 72で5分、その後連続的に 4 にした。 The PCR reaction conditions were as follows: 1 cycle of `` 95 3 minutes, 5 minutes at 40, 5 minutes at 72 '', followed by 30 cycles of `` 94、5 seconds, 2 minutes at 40, 1 minute at 72 '', followed by 72 cycles For 5 minutes and then continuously to 4.
使用したプライマー対はアンカープライマ一である GT15A (配列番号: 3)、 GT 15C (配列番号: 4)、 および GT15G (配列番号: 5) に対して任意プライマーを それぞれ AG !〜 110、 AG 111〜199、 および AG 200〜287を組み合わせ、 計 287組 の反応をおこなった。 なお、 任意プライマ一としては GC含量 50%の 10ヌクレオ チドからなるオリゴマーを設計し、 合成して用いた。 The primer pairs used were the primer primers GT15A (SEQ ID NO: 3), GT 15C (SEQ ID NO: 4), and GT15G (SEQ ID NO: 5). 110110, AG 111-199, and AG 200-287 were combined, for a total of 287 sets of reactions. As an arbitrary primer, an oligomer composed of 10 nucleotides having a GC content of 50% was designed, synthesized, and used.
ゲル電気泳動は、 6%変性ポリアクリルアミドゲルを作製し、 の試料を アプライし、 40Wで 210分間泳動した。 その後、 日立製蛍光イメージアナライザ -FMBI0 IIを用いてゲル板をスキャンし、 蛍光検出によって泳動画像を得た。 For gel electrophoresis, a 6% denaturing polyacrylamide gel was prepared, and samples were applied and electrophoresed at 40 W for 210 minutes. Thereafter, the gel plate was scanned using Hitachi Fluorescence Image Analyzer -FMBI0 II, and electrophoretic images were obtained by fluorescence detection.
[実施例 7] DD解析で切り出したバンドの増幅と配列決定 多数の任意プライマーを用いて 2回の D D解析を行った。 花粉飛散前後または 患者と健常者のグループの間で差のあるバンドを選択し、 2回の実験で再現性の あるバンドをゲルから切り出した。 [Example 7] Amplification of band excised by DD analysis and sequencing Two DD analyzes were performed using a number of arbitrary primers. Bands that differed before and after pollen dispersal or between the patient and healthy groups were selected and reproducible bands were excised from the gel in two experiments.
切り出したバンドの 1つ (「373」 と称する) についてさらに解析を進めた。 「3 73」 のバンドはアンカ一プライマーとして GT15A (配列番号: 3 ) を、 任意ブラ イマ一として AG18 (AAGCTCTCGAZ配列番号: 6 ) を用いた D D解析によって見出 された。 Further analysis was performed on one of the cut bands (designated "373"). The band of “373” was found by DD analysis using GT15A (SEQ ID NO: 3) as an anchor primer and AG18 (AAGCTCTCGAZ SEQ ID NO: 6) as an arbitrary primer.
「373」 の塩基配列を決定するために、 「373」のバンドを含むゲルを切り出し、 TE溶液に保存し 60で、 10分加温して DNAをゲルから溶出させた。 この TE溶液を 铸型として DD-PCRと同条件で PCRを行い、約 190bpの DNA断片を増幅した。アン 力一プライマーとして、 GT15Aを、 任意プライマ一として AG18を用いた。 増幅し た DNA断片をプラスミドベクタ一 pCR2. 1 (Invi t rogen社)にてクローニングし、約 190bpの DNA断片を保持するプラスミド P373-18を得た。 プラスミド DNAを用い て常法に従い DNA断片の塩基配列を決定した。 To determine the nucleotide sequence of “373”, the gel containing the “373” band was cut out, stored in a TE solution, and heated at 60 for 10 minutes to elute DNA from the gel. Using this TE solution as type II, PCR was performed under the same conditions as DD-PCR, and a DNA fragment of about 190 bp was amplified. GT15A was used as the primer and AG18 was used as the optional primer. The amplified DNA fragment was cloned using a plasmid vector pCR2.1 (Invitrogen) to obtain a plasmid P373-18 having a DNA fragment of about 190 bp. Using the plasmid DNA, the nucleotide sequence of the DNA fragment was determined according to a conventional method.
[実施例 8 ] ABI-7700による定量 [Example 8] Quantification by ABI-7700
ABI- PRI SM7700を用いた TaqMan法により、 「373」 の発現量の定量を行った。 こ の方法は PCR増幅された DNA鎖を蛍光色素を用いてリアルタイムに定量検出する システムである。 The expression amount of “373” was quantified by the TaqMan method using ABI-PRI SM7700. This method uses a fluorescent dye to quantitatively detect the PCR-amplified DNA strand in real time.
定量のために新たに 1998年春にスギ花粉飛散前 ·後の血液試料を 22名のボラ ンティアから採取し、 T細胞を調製して全 RNAを抽出した。 計 44種の全 RNA試料 を用いて目的の遺伝子の発現量を定量した。 For the purpose of quantification, blood samples before and after cedar pollen scattering were collected from 22 volunteers in the spring of 1998, T cells were prepared, and total RNA was extracted. The expression level of the target gene was quantified using a total of 44 RNA samples.
実施例 1と同様にしてスギ花粉、 ヒノキ花粉、 ャケヒヨウダニ、 およびコナヒ ヨウダニの特異的 I gE値、 並びに総 IgE値を測定した (表 2 )。 表 2 In the same manner as in Example 1, specific IgE values and total IgE values of cedar pollen, cypress pollen, house dust mite, and house dust mite were measured (Table 2). Table 2
特異的 IqE值 Specific IqE 值
特異的 IgE (UA/ml) 総 igE 被 者 血液採取時期 スギ ヒノキ ャケヒヨウヒダニ コナヒヨウヒダニ (UA ml) Specific IgE (UA / ml) Total igE Subjects Blood collection time Sugi (Cypress)
A 飛散前 42.7 5.46 1.09 <0.34 300 A Before scattering 42.7 5.46 1.09 <0.34 300
83.2 7.85 T .2B <0.34 460 83.2 7.85 T .2B <0.34 460
B !Ktttti 31.9 4.33 72.5 52.6 770 B! Ktttti 31.9 4.33 72.5 52.6 770
飛 tt後 36.8 3.56 78.8 47.9 840 36.8 3.56 78.8 47.9 840
C 飛 tt前 15.2 1.5 66.7 66.1 450 15.1 1.5 66.7 66.1 450
飛 後 20.3 1.32 64.3 49.7 330 After flight 20.3 1.32 64.3 49.7 330
D 飛》前 13.9 1.1 1 39.3 63.4 200 Before D Fly 13.9 1.1 1 39.3 63.4 200
飛散後 18.4 0.81 31.9 54.7 120 After scattering 18.4 0.81 31.9 54.7 120
E 飛散前 S.25 0.48 <0.34 ぐ 0.34 30 E Before scattering S.25 0.48 <0.34 g 0.34 30
飛 Ilk後 8.33 0.46 <0 34 ぐ 0.34 38 8.33 0.46 <0 34 after flying Ilk 0.34 38
F 飛散前 6.64 0.39 <0.34 ぐ 0.34 26 F Before scattering 6.64 0.39 <0.34 g 0.34 26
飛散後 8.21 0.47 <0.34 ぐ 0.34 27 After scattering 8.21 0.47 <0.34 g 0.34 27
G 飛 IK,リ 1.29 <0.34 <0.34 ぐ 0.34 26 G fly IK, re 1.29 <0.34 <0.34 go 0.34 26
飛 tt後 4.02 ぐ 0.34 <0.34 ぐ 0.34 30 Fly tt after 4.02 go 0.34 <0.34 go 0.34 30
H 飛 It抑 1.99 0.41 26.5 36.1 220 H Fly It Suppress 1.99 0.41 26.5 36.1 220
飛緻後 3.65 0.53 23.2 29.5 150 After flying 3.65 0.53 23.2 29.5 150
1 飛 ttm 0.93 <0.34 54.6 51.7 1 30 1 fly ttm 0.93 <0.34 54.6 51.7 1 30
飛散後 3.51 <0.34 43.3 39.9 T OO After scattering 3.51 <0.34 43.3 39.9 T OO
J 飛 tt前 3.55 0.68 0.55 <0.34 96 J before tt 3.55 0.68 0.55 <0.34 96
飛 2.77 0.42 0.39 <0.34 78 Flying 2.77 0.42 0.39 <0.34 78
K 飛散前 1.2 <0.34 <0.34 <0.34 96 Before K scattering 1.2 <0.34 <0.34 <0.34 96
飛 Ik後 2.72 ぐ 0.34 <0.34 <0.34 1 10 し 飛散前 0.95 0.39 1.3 1.8 13 2.72 after flying Ik 0.34 <0.34 <0.34 1 10 then before scattering 0.95 0.39 1.3 1.8 13
Htt« 2.S 0.51 1.45 2.38 18 Htt «2.S 0.51 1.45 2.38 18
Μ 飛 Km <0.34 <0.34 <0.34 <0.34 36 飛 Flying Km <0.34 <0.34 <0.34 <0.34 36
飛 tt後 2.08 <0.34 <0.34 0.34 43 After flight tt 2.08 <0.34 <0.34 0.34 43
Ν 0.42 <0.34 <0.34 <0.34 22 Ν 0.42 <0.34 <0.34 <0.34 22
飛 llk^e 1.67 <0.34 0.45 <0.34 73 Flying llk ^ e 1.67 <0.34 0.45 <0.34 73
0 飛敢前 0.54 0.34 28.1 27.2 180 0 Before flying 0.54 0.34 28.1 27.2 180
飛 Ilk後 1.42 <0.34 27.2 26.3 160 After flying Ilk 1.42 <0.34 27.2 26.3 160
Ρ 飛敗前 0.38 0.34 5.08 3.65 280 前 Before the defeat 0.38 0.34 5.08 3.65 280
飛散後 0.68 <0.34 4.49 3.02 240 After scattering 0.68 <0.34 4.49 3.02 240
Q 飛散前 <0.34 <0.34 <0.34 <0.34 <5.0 Before Q scattering <0.34 <0.34 <0.34 <0.34 <5.0
飛 it後 <0.34 <0.34 <0.34 <0.34 <5.0 After flying it <0.34 <0.34 <0.34 <0.34 <5.0
R <0.34 <0.34 <0.34 <0.34 S3 R <0.34 <0.34 <0.34 <0.34 S3
飛散後 <0.34 <0.34 <0.34 <0.34 62 After scattering <0.34 <0.34 <0.34 <0.34 62
S 飛散前 <0.34 <0.34 <0.34 <0.34 420 Before S scattering <0.34 <0.34 <0.34 <0.34 420
飛 後 <0.34 <0.34 <0.34 <0.34 370 After flight <0.34 <0.34 <0.34 <0.34 370
Τ 飛散前 <0.34 <0.34 0.34 <0.34 82 前 Before scattering <0.34 <0.34 0.34 <0.34 82
飛》後 <0.34 <0.34 0.34 <0.34 62 υ 飛 M前 <0.34 <0.34 0.34 0.34 18 After flying <0.34 <0.34 0.34 <0.34 62 υ Before flying M <0.34 <0.34 0.34 0.34 18
飛 it後 <0.34 <0.34 <0.34 <0.34 16 After flying it <0.34 <0.34 <0.34 <0.34 16
V 飛 前 0.34 <0.34 0.79 0.81 180 V before flight 0.34 <0.34 0.79 0.81 180
飛散後 <0.34 <0.34 0.78 0.9 160 実施例 7において決定した DDバンドの塩基配列を基にしてプライマー P373f (G GAMGATCGTCAGGAMCTGGZ配列番号: 7 )、 P373r (TCCCTTCMCAAGTCTGCCCZ配列番 号: 8 )、 および TaqManプロ一ブ P373 (CAGCATCATCATCAMCATGGCTTCCTTGノ配列 番号: 9 ) を設計、 合成し定量反応に用いた。 TaqManプローブ P373は 5 ' 端を FAM(6 - carboxyf luorescein)で、 3 端を TA RA (6-carboxy-tetramethyl-rhodam ine)で蛍光標識して用いた。铸型には 44種の全 RNAからポリ T (12〜18マー)をプ ライマーとして逆転写した cDNAを用いた。コピー数を算出する標準曲線のために 実施例 7で得たプラスミド P373-18の段階希釈液を铸型として反応を行った。 PC R増幅のモニタリングのための反応液の組成は表 3に示した。 また、 試料中の cD NA濃度の差を補正するため、 )3 -ァクチン (/3 - ac t in) 遺伝子について同様の定 量解析を行い、 それら遺伝子のコピー数を基に補正して、 目的遺伝子(373) のコ ピー数を算出した。 After scattering <0.34 <0.34 0.78 0.9 160 Based on the nucleotide sequence of the DD band determined in Example 7, primers P373f (G GAMGATCGTCAGGAMCTGGZ SEQ ID NO: 7), P373r (TCCCTTCMCAAGTCTGCCCZ SEQ ID NO: 8), and TaqMan probe P373 (CAGCATCATCATCAMCATGGCTTCCTTG NO SEQ ID NO: 9) Was designed, synthesized, and used for quantitative reactions. The TaqMan probe P373 was fluorescently labeled at the 5 'end with FAM (6-carboxyfluorescein) and at the 3' end with TA RA (6-carboxy-tetramethyl-rhodamine). For type I, reverse transcribed cDNA was used as a primer with poly T (12-18 mer) from 44 total RNAs. For a standard curve for calculating the copy number, a serial dilution of the plasmid P373-18 obtained in Example 7 was used to carry out the reaction. Table 3 shows the composition of the reaction mixture for monitoring PCR amplification. In addition, in order to correct the difference in the cDNA concentration in the sample, the same quantitative analysis was performed on the 3) -actin (/ 3-actin) gene, and correction was performed based on the copy number of those genes. The number of copies of the gene (373) was calculated.
表 3 Table 3
ABI-PRISM 7700の反応組成 ( 1ゥエルあたりの反応量) 滅菌蒸留水 25.66 ( l) Reaction composition of ABI-PRISM 7700 (reaction volume per 1 ゥ) Sterile distilled water 25.66 (l)
10x TaqMan バッファ一 A 5 10x TaqMan Buffer A 5
25mM MgCl2 7 25mM MgCl 2 7
dATP(lOm ) 1.2 dATP (lOm) 1.2
dCTP(lOmM) 1.2 dCTP (lOmM) 1.2
dGTP(lOmM) 1.2 dGTP (lOmM) 1.2
dUTP(lOmM) 1.2 dUTP (lOmM) 1.2
Forward Primer (IOO IM) 0.15 Forward Primer (IOO IM) 0.15
Reverse Primer (100 M) 0.15 Reverse Primer (100 M) 0.15
373 TaqMan プローブ(6.7 M) 1.49 373 TaqMan probe (6.7 M) 1.49
Am liTaq Gold (Will) 0.25 Am liTaq Gold (Will) 0.25
AmpErase UNG (1U/ L) 0.5 AmpErase UNG (1U / L) 0.5
テンプレート溶液 5 Template solution 5
50 50
)3 -ァクチンのコピー数で補正した各試料中の 「373」 の存在数 (コピー数) を 表 4に示す。補正は全試料における) 3-ァクチンの平均コピーを求め、それを 1と したときの各試料中の) 3-ァクチンの相対値で各試料中の 「373」 のコピー数を除 した。 表 4 ) Table 4 shows the number (copy number) of “373” in each sample corrected for the copy number of 3-actin. For the correction, the average copy of 3-actin) in all samples was obtained, and the copy number of “373” in each sample was divided by the relative value of 3-actin in each sample when that was set to 1. Table 4
ABI7700【こよる定量偏 (copy/ngRNA) beta actin補正 data 被験者 血渚採取時 ffl バン ID ABI7700 [Quantitative bias (copy / ngRNA) due to beta actin correction data Subject At the time of collecting blood beach ffl van ID
373 373
A 飛 M前 568 A Flying M Mae 568
飛散後 366 After dispersal 366
B 飛散前 524 B Before scattering 524
飛 mi 160 Flying mi 160
C 437 m敗後 230C 437 m Lost 230
D 飛 前 539 D flying before 539
飛 tt後 215 Flying tt after 215
E 飛 tt前 615 E flying tt before 615
飛敗後 208 After defeat 208
F 飛數前 574 F before flight 574
飛敗後 394 After defeat 394
G 飛敗前 372 G Before Defeat 372
飛散後 312 After dispersion 312
H 飛 tt前 267 H flying tt before 267
飛敗後 337 After defeat 337
1 飛 tt前 261 1 flying tt ago 261
飛 tt後 293 Flying tt after 293
J 飛敏前 250 J Hitoumae 250
飛 後 324 飛 tt前 466 飛散後 221 し 飛數前 2140 After flying 324 Before flying tt Before 466 After flying 221 Before flying 2140
飛 tt後 992 Flying tt after 992
M 飛散前 172 M before scattering 172
飛敗後 371 After defeat 371
N 飛散前 1036 N before scattering 1036
飛 後 465 After the flight 465
0 飛 前 983 0 before flight 983
Iktt後 436 After Iktt 436
P 飛敗前 248 P Before losing 248
飛敝後 567 After flying 567
Q 飛敏前 704 Q Hitoshi Mae 704
飛敗後 642 After defeat 642
R 飛敏前 701 R Hitoshi Mae 701
飛散後 235 After scattering 235
S 飛敗前 51 1 S Before defeat 51 1
飛《後 436 《After 436》
T 飛 it前 714 T hit it before 714
飛 η接 424 u 飛敏前 768 Hit η contact 424 u hitoshimae 768
飛敏後 560 After 560
V 飛敏前 562 V Hitoshi Mae 562
飛敗後 174 この値を用いて二元配置分散分析を行った。 群分けは、 スギ花粉飛散前と後、 または血清中の各特異的 IgEについて 2回の測定のうち 1回でも 3. 5 AU/ml以上 を示した群 (高 IgEグループ) とそれ以外 (正常 IgEグループ) の 2つの要因に わけて検定した。 各グループの人数は、 たとえばスギ花粉の場合、 高 IgEグルー プ 1 0人:正常 IgEグループ 1 2人であった。 また、 総 IgEについて 200 AU/ml を示した群とそれ以外の群に分けて検定した。二元配置分散分析の検定は StatVi ewソフトウェア (Abacuus Concepts, Inc. ) を用いて行った。 After defeat 174 Using this value, two-way analysis of variance was performed. The grouping was performed before and after scattering of Japanese cedar pollen, or at least 3.5 AU / ml for each specific serum IgE in serum (high IgE group) and other (normal). (IgE group). For example, in the case of cedar pollen, the number of individuals in each group was 10 in the high IgE group and 12 in the normal IgE group. The test was performed separately for the group showing 200 AU / ml for total IgE and the other groups. Two-way analysis of variance was tested using StatView software (Abacuus Concepts, Inc.).
その結果、 スギ花粉に対する IgE値で群分けすると、 「373」 の発現は高 IgEグ ループにおいて正常 IgEグループよりも有意に低いことが示された(表 5、図 2 )。 飛散前後のデータを合わせた場合の高 IgEグループおよび正常 IgEグループにお ける 373の発現量はそれぞれ 362· 2± 137. 8 および 605. 3±410. 5 コピー Zng R NA (平均土標準偏差) であった。 The results showed that the expression of “373” was significantly lower in the high IgE group than in the normal IgE group when grouped by IgE value for cedar pollen (Table 5, FIG. 2). The combined expression of 373 in the high IgE group and the normal IgE group when the data before and after the scattering were combined was 362 · 2 ± 137.8 and 605.3 ± 410.5 copies, respectively. Zng RNA (mean soil standard deviation) Met.
また、 二元配置分散分析により、 花粉飛散前の発現が、 飛散後に比べ有意に高 いことが判明した (表 5、 図 3 )。 花粉飛散前および飛散後で群分けした場合の 3 73 の発現量は、 それぞれ 609. 6±410. 6 および 378. 0± 190. 3 コピー Zng RNA (平均土標準偏差) であった。 さらに、 花粉飛散前後の差の t検定を行ったとこ ろ、 やはり有意差が認められた (表 5 )。 Two-way analysis of variance revealed that expression before pollen scattering was significantly higher than after pollen scattering (Table 5, Fig. 3). The expression levels of 373 before and after pollen dispersal were 609.6 ± 410.6 and 378.0 ± 190.3 copies of Zng RNA (mean soil standard deviation), respectively. Furthermore, when a t-test was performed on the difference between before and after pollen scattering, a significant difference was again observed (Table 5).
表 5 Table 5
373 373
[実施例 9 ] 「373」 のノーザン解析 [Example 9] Northern analysis of "373"
373配列内に約 1. 5kbとなるように特異的なプライマーを作成し、ヒト末梢血 c DNAライブラリーを铸型として PCRを行い 373の配列を増幅した。 2種類の PCR 産物を混合後、 QIA quick(QIAGEN)を用いて精製した。プライマーの塩基配列は以 下のとおりである。 Prepare specific primers to be about 1.5 kb within 373 sequences and prepare human peripheral blood c PCR was performed using the DNA library as type III to amplify 373 sequences. After mixing the two PCR products, they were purified using QIA quick (QIAGEN). The nucleotide sequences of the primers are as follows.
373特異的プライマー配列 373 specific primer sequence
373-U5: TGCCAGTGTTATGATTGTAT (配列番号: 10) 373-U5: TGCCAGTGTTATGATTGTAT (SEQ ID NO: 10)
373-L6: TCAAGTAATGTTATGTACAGT (配列番号: 1 1) 373-L6: TCAAGTAATGTTATGTACAGT (SEQ ID NO: 11)
CL0NTECH社の Human Immune System MTN Blot IIおよび Human Cancer Cell L ine MTN Blot (いずれも既に mRNAを転写した膜) を用いた。 Random Primer Lab eling Kit (TAKARA)を用いて32 Pによりプローブ DNAを標識した。 Express Hybr idization Solution (CLONTECH) を用いて添付使用書通りにノーザンハイブリダ ィゼーシヨンおよび膜洗浄を行つた。 CL0NTECH Human Immune System MTN Blot II and Human Cancer Cell Line MTN Blot (both membranes already transcribed mRNA) were used. The probe DNA was labeled with 32 P using a Random Primer Labeling Kit (TAKARA). Northern hybridization and membrane washing were performed using Express Hybridization Solution (CLONTECH) according to the instructions attached.
洗浄はガイガーカウンタ一で膜の放射能を測定しながら、 2xSSC- 0.1¾SDSを用 いて室温で 3回洗った。膜に密着させた条件でカウント数が 1000以上数万以下に なったところでー晚イメージングプレートに暴露し画像を取得した。画像は Mole cular Imager System (BIO-RAD)によって取得した。 「373」のノーザン解析の結果、 7.5kbの主バンドと、 6.7kbの副バンドが検出され、 本発明の 「373」 が約 7.5kb の mRNAとして発現していることが推測された (図 4)。 Washing was performed three times at room temperature using 2xSSC-0.1¾SDS while measuring the radioactivity of the membrane with a Geiger counter. When the count reached 1000 or more and tens of thousands or less under the condition of being in close contact with the membrane, it was exposed to an imaging plate to acquire an image. Images were acquired with a Molecular Imager System (BIO-RAD). As a result of Northern analysis of “373”, a main band of 7.5 kb and a sub-band of 6.7 kb were detected, and it was inferred that “373” of the present invention was expressed as an approximately 7.5 kb mRNA (FIG. 4). ).
[実施例 1 0] 「373」 のクローニングと塩基配列の解析 [Example 10] Cloning of “373” and analysis of nucleotide sequence
「373」 の塩基配列をデータベース検索したところ、 相同性を有する複数の EST が存在していた。 そこで、 「373」 と相同性を有する ESTの配列を dbESTから抽出 後、 ABI AutoAssemblerを用いて個々の配列をアセンブルし、 5.6kbの配列を得た。 この配列中には 1324アミノ酸からなるオープンリーディングフレーム(0RF)が予 測されたが、 5'非コード領域がないこと、 およびノーザンハイブリダィゼーショ ンの結果、 予測される mRNAのサイズが 7.5kbであったことから、 次に 5' -RACE を行い、 さらに上流の配列を決定した。 A database search of the nucleotide sequence of "373" revealed that there were multiple ESTs with homology. Therefore, after extracting an EST sequence having homology to “373” from dbEST, the individual sequences were assembled using ABI AutoAssembler to obtain a 5.6 kb sequence. An open reading frame (0RF) consisting of 1324 amino acids was predicted in this sequence, but the absence of the 5 'non-coding region and the result of Northern hybridization revealed that the predicted mRNA size was 7.5%. Since it was kb, 5'-RACE was performed next, and the further upstream sequence was determined.
RACEには、 Marathon cDNA Amplification Kit (CLONTECH社) を用い、 铸型と して Human Leukocyte Marathon-Ready cDNA (CLONTECH社) を使用した。 373特 異的プライマーには、 373-3' (5'- MGTGCTCCATCCAACMTCGTAA-3'Ζ配列番号: 1 2) を用いた。 その結果、 約 700bpの新規の上流配列が得られた。 決定された約 6.2kbの 373の塩基配列を配列番号: 1に、 373によりコードされるタンパク質の アミノ酸配列を配列番号: 2に示す。 配列番号: 2に示すアミノ酸配列の SwissP rot に対するホモロジ一検索により、 ヒトでは類似する配列が知られていないこ とが確認された。 ヒト以外の種では elegansでホモロジ一の高い配列が確認さ れているが、 その機能は未知で、 hypothetical proteinとして ORFから推定され た構造である。 For RACE, use the Marathon cDNA Amplification Kit (CLONTECH) and Human Leukocyte Marathon-Ready cDNA (CLONTECH) was used. 373-3 ′ (5′-MGTGCTCCATCCAACMTCGTAA-3′ΖSEQ ID NO: 12) was used as a 373 specific primer. As a result, a new upstream sequence of about 700 bp was obtained. The determined nucleotide sequence of about 372 kb of 373 is shown in SEQ ID NO: 1, and the amino acid sequence of the protein encoded by 373 is shown in SEQ ID NO: 2. A homology search for SwissProt of the amino acid sequence shown in SEQ ID NO: 2 confirmed that a similar sequence was not known in humans. In non-human species, sequences with the highest homology have been identified in elegans, but their function is unknown, and the structure is deduced from the ORF as a hypothetical protein.
一方、 373と相同性のある EST (計 71 ESTs) の配列のうち 18個は STSマーカ 一 (gb:G19803, G23193)を持つており、その情報から本遺伝子が第 3染色体上の p2 1-14にマップされることが推測された。 産業上の利用の可能性 On the other hand, 18 of the sequences of ESTs (total 71 ESTs) homologous to 373 have one STS marker (gb: G19803, G23193). It was speculated to be mapped to 14. Industrial applicability
本発明により、 スギ花粉特異的 IgE値と相関を示す新規遺伝子が提供された。 本発明の遺伝子の発現を指標に、 アレルギー素因を有するか否かの検査、 および アレルギー疾患治療薬候補化合物のスクリーニングを行うことが可能となった。 According to the present invention, a novel gene having a correlation with a cedar pollen-specific IgE value was provided. Using the expression of the gene of the present invention as an index, it has become possible to carry out a test for whether or not the subject has an allergic predisposition and a screening for candidate compounds for a therapeutic drug for allergic diseases.
Claims
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| JP12048999A JP2003125775A (en) | 1999-04-27 | 1999-04-27 | Hay fever-related gene, 373 |
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| WO2002050269A1 (en) * | 2000-12-21 | 2002-06-27 | Genox Research, Inc. | Method of examining allergic disease |
| WO2017146011A1 (en) * | 2016-02-22 | 2017-08-31 | 国立大学法人 千葉大学 | Biomarker for diagnosis of allergic rhinitis |
| JPWO2017146011A1 (en) * | 2016-02-22 | 2019-01-17 | 国立大学法人千葉大学 | Biomarker for diagnosis of allergic rhinitis |
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| JP2003125775A (en) | 2003-05-07 |
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