WO1997013853A2 - Detection de proteines - Google Patents
Detection de proteines Download PDFInfo
- Publication number
- WO1997013853A2 WO1997013853A2 PCT/EP1996/004510 EP9604510W WO9713853A2 WO 1997013853 A2 WO1997013853 A2 WO 1997013853A2 EP 9604510 W EP9604510 W EP 9604510W WO 9713853 A2 WO9713853 A2 WO 9713853A2
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- ser
- gly
- ala
- thr
- leu
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Ceased
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1086—Preparation or screening of expression libraries, e.g. reporter assays
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/14—Hydrolases (3)
- C12N9/24—Hydrolases (3) acting on glycosyl compounds (3.2)
- C12N9/2402—Hydrolases (3) acting on glycosyl compounds (3.2) hydrolysing O- and S- glycosyl compounds (3.2.1)
- C12N9/2405—Glucanases
- C12N9/2434—Glucanases acting on beta-1,4-glucosidic bonds
- C12N9/2437—Cellulases (3.2.1.4; 3.2.1.74; 3.2.1.91; 3.2.1.150)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/14—Hydrolases (3)
- C12N9/24—Hydrolases (3) acting on glycosyl compounds (3.2)
- C12N9/2402—Hydrolases (3) acting on glycosyl compounds (3.2) hydrolysing O- and S- glycosyl compounds (3.2.1)
- C12N9/2477—Hemicellulases not provided in a preceding group
- C12N9/248—Xylanases
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y302/00—Hydrolases acting on glycosyl compounds, i.e. glycosylases (3.2)
- C12Y302/01—Glycosidases, i.e. enzymes hydrolysing O- and S-glycosyl compounds (3.2.1)
- C12Y302/01004—Cellulase (3.2.1.4), i.e. endo-1,4-beta-glucanase
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y302/00—Hydrolases acting on glycosyl compounds, i.e. glycosylases (3.2)
- C12Y302/01—Glycosidases, i.e. enzymes hydrolysing O- and S-glycosyl compounds (3.2.1)
- C12Y302/01008—Endo-1,4-beta-xylanase (3.2.1.8)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y302/00—Hydrolases acting on glycosyl compounds, i.e. glycosylases (3.2)
- C12Y302/01—Glycosidases, i.e. enzymes hydrolysing O- and S-glycosyl compounds (3.2.1)
- C12Y302/01032—Xylan endo-1,3-beta-xylosidase (3.2.1.32), i.e. endo-1-3-beta-xylanase
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y302/00—Hydrolases acting on glycosyl compounds, i.e. glycosylases (3.2)
- C12Y302/01—Glycosidases, i.e. enzymes hydrolysing O- and S-glycosyl compounds (3.2.1)
- C12Y302/01055—Alpha-N-arabinofuranosidase (3.2.1.55)
Definitions
- the DNA of interest is identified by the expression of the protein it encodes, rather than by going through the tedious tasks of purifying the protein, amino acid sequencing and molecular cloning of o the gene.
- One technique of expression cloning is a plate assay, wherein a cDNA library is plated onto a medium of a composition which enables screening for positive colonies. Screening for the protein of interest does not require pure protein, only the availability of a suitable assay for the detection of activity. This may be a standard assay if for example, cellulase activity may be detected using an overlay containing carboxymethyl cellulose, followed by visualisation by staining with Congo Red.
- the nucleic acid sequence of the invention is operably linked to a promoter capable of expressing the sequence.
- "Operably linked” refers to a juxtaposition wherein the promoter and the nucleic acid sequence encoding the polypeptide or protein are in a relationship permitting the coding sequence to be expressed under the control of the promoter.
- there may be elements such as 5' non-coding sequence between the promoter and coding sequence.
- Such sequences can be included in the vector if they enhance or do not impair the correct control of the coding sequence by the promoter.
- the invention also provides polypeptides encoded by the nucleic acids of the invention.
- A. niger N400 cultures were grown for 69 and 81 h respectively, as described in s EP-A- 0 463 706 but without yeast extract and with 2% of a crude wheat arabinoxylan fraction instead of oat spelt xylan, after which the mycelium was harvested by filtration and then washed with sterile saline. The mycelium was subsequently frozen in liquid nitrogen after which it was powdered using a Microdismembrator (Braun). Total RNA was isolated from mycelial powder in accordance with the guanidium thiocyanate/CsCI o protocol described in Sambrook et al. (1 989), except that the RNA was centrifuged twice using a CsCl gradient.
- the recombinant Uni-ZAP XR clones containing A. niger cDNA were converted to Bluescript phagemids using superinfection with the filamentous helper phage EXASSIST'TM and E.coli SOLR strain which are included in the cDNA synthesis kit from Stratagene, according to the manufacturer's instructions.
- a glycerol stock containing about 100 colonies per vl of suspension was stored at -80°C.
- Cells are plated in an overlay of 5 ml containing about 200 colonies per plate. The overlay is kept at 50°C and contains 2 x TY, 0.2% CMC, 0.75% agar and 100 ⁇ g ampicillin per ml. Plates are covered with 5 ml 0.5% agarose, 0.2% CMC and 100 ⁇ g ampicillin per ml kept at 50°C.
- Example IV.1 Screening for endo-xylanase activity.
- the method is similar to that used for cellulase-producing colonies in Example III.
- the bottom layer contains 2 x TY, 1 .5% agar and 100 ⁇ g ampicillin per ml.
- Cells are plated out in an overlay containing 2 x TY, 0.2 % oat spelt xylan (Sigma X-0627) 0.75 % agar and 100 ⁇ g ampicillin per ml.
- the top layer contains 0.5% agarose, 0.1 % RBB-xylan (Sigma M501 ) and 100 ⁇ g ampicillin per ml in 25 mM phosphate buffer pH7.4.
- the plasmid library was also plated on minimal medium plates containing 2% oat spelt xylan. After two days at 37°C some colonies gave halos, indicating the production of endo-xylanase. Other colonies gave rise to precipitation rings around the colonies. Five of the latter colonies were partially sequenced. They were similar to the arabinoxylan degrading cDNA whose isolation is described in pending application EP 94202442.3. A colony containing an A. niger axdA cDNA was deposited at the CBS on 3 August 1995 under CBS 592.95. The DNA sequence of the insert is as shown in SEQ ID No. 9, together with the amino acid sequence it encodes.
- ORGANISM Aspergillus niger
- ORGANISM Aspergillus niger
- GGT GCA AGC CAG TAC ATT TTC GTC GAA
- GGC AAC TCC TGG ACC GGA GCT 628
- Gly Ala Ser Gin Tyr lie Phe Val Glu Gly Asn Ser Trp Thr Gly Ala 185 190 195
- MOLECULE TYPE cDNA
- HYPOTHETICAL NO
- ANTI-SENSE NO
- ORGANISM Aspergillus niger
- MOLECULE TYPE cDNA
- HYPOTHETICAL NO
- ANTI-SENSE NO
- ORGANISM Aspergillus niger
- MOLECULE TYPE cDNA
- HYPOTHETICAL NO
- ANTI-SENSE NO
- ORGANISM Aspergillus niger
- GGC ATA TAC CTC ATT GCA TTG GCC CCC TTT GTC AAC GCA AAA TGC
- GCT 158 Gly Ile Tyr Leu Ile Ala Leu Ala Pro Phe Val Asn Ala Lys Cys Ala 15 20 25
- MOLECULE TYPE protein
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Biochemistry (AREA)
- Biotechnology (AREA)
- Biomedical Technology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Medicinal Chemistry (AREA)
- Bioinformatics & Computational Biology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Plant Pathology (AREA)
- Enzymes And Modification Thereof (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
- Peptides Or Proteins (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
Priority Applications (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| JP9514730A JPH10510720A (ja) | 1995-10-13 | 1996-10-14 | タンパク質検出法 |
| EP96934722A EP0796328A2 (fr) | 1995-10-13 | 1996-10-14 | Detection de proteines |
| AU72943/96A AU7294396A (en) | 1995-10-13 | 1996-10-14 | Protein detection |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP95202777 | 1995-10-13 | ||
| EP95202777.9 | 1995-10-13 |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| WO1997013853A2 true WO1997013853A2 (fr) | 1997-04-17 |
| WO1997013853A3 WO1997013853A3 (fr) | 1997-06-19 |
Family
ID=8220719
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/EP1996/004510 Ceased WO1997013853A2 (fr) | 1995-10-13 | 1996-10-14 | Detection de proteines |
Country Status (4)
| Country | Link |
|---|---|
| EP (1) | EP0796328A2 (fr) |
| JP (1) | JPH10510720A (fr) |
| AU (1) | AU7294396A (fr) |
| WO (1) | WO1997013853A2 (fr) |
Cited By (15)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| FR2786784A1 (fr) * | 1998-12-04 | 2000-06-09 | Lesaffre & Cie | FRAGMENT D'ADN CODANT POUR LA XYLANASE THERMOSTABLE XynA DE THERMOASCUS |
| WO2001079507A3 (fr) * | 2000-04-13 | 2002-02-07 | Mark Aaron Emalfarb | Nouvelles sequences de regulation de l'expression et produits d'expression dans le domaine des champignons filamenteux |
| US6573086B1 (en) | 1998-10-06 | 2003-06-03 | Dyadic International, Inc. | Transformation system in the field of filamentous fungal hosts |
| US7220542B2 (en) | 2000-07-17 | 2007-05-22 | Van Den Brink Johannes Maarten | Expression cloning in filamentous fungi |
| EP1862540A1 (fr) * | 2003-05-29 | 2007-12-05 | Genencor International, Inc. | Nouveaux gènes de Trichoderma |
| WO2008037757A1 (fr) | 2006-09-29 | 2008-04-03 | Novozymes A/S | Xylanases pour aliments pour animaux |
| US7374925B2 (en) | 1998-05-06 | 2008-05-20 | Adisseo France Sas | Penicillium funiculosum mutant strain |
| WO2010121933A1 (fr) * | 2009-04-22 | 2010-10-28 | Dsm Ip Assets B.V. | Procédé de production d'un polypeptide recombinant d'intérêt |
| EP2319920A1 (fr) | 2005-12-22 | 2011-05-11 | ROAL Oy | Traitement de matériel cellulosique et enzymes pouvant être employées dans ce traitement |
| US8043839B2 (en) | 2006-02-14 | 2011-10-25 | Verenium Corporation | Xylanases, nucleic acids encoding them and methods for making and using them |
| WO2013037933A3 (fr) * | 2011-09-14 | 2013-05-30 | Dupont Nutrition Biosciences Aps | Enzymes |
| US8486680B2 (en) | 2007-10-03 | 2013-07-16 | Bp Corporation North America Inc. | Xylanases, nucleic acids encoding them and methods for making and using them |
| US8728769B2 (en) | 2002-06-14 | 2014-05-20 | Bp Corporation North America Inc. | Xylanases, nucleic acids encoding them and methods for making and using them |
| EP2678426A4 (fr) * | 2011-02-25 | 2015-03-25 | Univ Saskatchewan | Protéines pour la lutte biologique contre des champignons pathogènes de plantes |
| US9012186B2 (en) | 2009-04-27 | 2015-04-21 | The Board Of Trustees Of The University Of Illinois | Hemicellulose-degrading enzymes |
Family Cites Families (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| IE20040144A1 (en) * | 1990-07-24 | 2004-05-19 | Dsm Nv | Cloning and expression of xylanase genes from fungal origin |
| US5863783A (en) * | 1991-03-27 | 1999-01-26 | Gist-Brocades, N.V. | Cloning and expression of DNA molecules encoding arabinan-degrading enzymes of fungal origin |
| MX9206979A (es) * | 1991-12-04 | 1993-07-01 | Novo Nordisk As | Metodo de clonacion de proteinas en levaduras |
-
1996
- 1996-10-14 JP JP9514730A patent/JPH10510720A/ja active Pending
- 1996-10-14 EP EP96934722A patent/EP0796328A2/fr not_active Withdrawn
- 1996-10-14 AU AU72943/96A patent/AU7294396A/en not_active Abandoned
- 1996-10-14 WO PCT/EP1996/004510 patent/WO1997013853A2/fr not_active Ceased
Cited By (36)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US8043844B2 (en) | 1998-05-06 | 2011-10-25 | Adisseo France Sas | Mixture obtained from penicillium funiculosum |
| US7374925B2 (en) | 1998-05-06 | 2008-05-20 | Adisseo France Sas | Penicillium funiculosum mutant strain |
| US6573086B1 (en) | 1998-10-06 | 2003-06-03 | Dyadic International, Inc. | Transformation system in the field of filamentous fungal hosts |
| US7399627B2 (en) | 1998-10-06 | 2008-07-15 | Dyadic International (Usa), Inc. | Transformation system in the field of filamentous fungal hosts |
| US7906309B2 (en) | 1998-10-06 | 2011-03-15 | Dyadic International (Usa), Inc. | Expression-regulating sequences and expression products in the field of filamentous fungi |
| FR2786784A1 (fr) * | 1998-12-04 | 2000-06-09 | Lesaffre & Cie | FRAGMENT D'ADN CODANT POUR LA XYLANASE THERMOSTABLE XynA DE THERMOASCUS |
| US8067157B2 (en) | 1998-12-22 | 2011-11-29 | Dsm Ip Assets B.V. | Expression cloning in filamentous fungi |
| WO2001079507A3 (fr) * | 2000-04-13 | 2002-02-07 | Mark Aaron Emalfarb | Nouvelles sequences de regulation de l'expression et produits d'expression dans le domaine des champignons filamenteux |
| US7220542B2 (en) | 2000-07-17 | 2007-05-22 | Van Den Brink Johannes Maarten | Expression cloning in filamentous fungi |
| US9765319B2 (en) | 2002-06-14 | 2017-09-19 | Bp Corporation North America Inc. | Xylanases, nucleic acids encoding them and methods for making and using them |
| US8728769B2 (en) | 2002-06-14 | 2014-05-20 | Bp Corporation North America Inc. | Xylanases, nucleic acids encoding them and methods for making and using them |
| US8202704B2 (en) | 2003-05-29 | 2012-06-19 | Danisco Us Inc. | Trichoderma genes |
| EP1862540A1 (fr) * | 2003-05-29 | 2007-12-05 | Genencor International, Inc. | Nouveaux gènes de Trichoderma |
| US7923235B2 (en) | 2003-05-29 | 2011-04-12 | Danisco Us Inc. | CIP1 polypeptides and their uses |
| US7666648B2 (en) | 2003-05-29 | 2010-02-23 | Danisco Us Inc. | Isolated polypeptide having arabinofuranosidase activity |
| US9593324B2 (en) | 2005-12-22 | 2017-03-14 | Roal Oy | Treatment of cellulosic material and enzymes useful therein |
| EP2453013A1 (fr) | 2005-12-22 | 2012-05-16 | ROAL Oy | Traitement de matériel cellulosique et enzymes pouvant être employées dans ce traitement |
| EP2453014A1 (fr) | 2005-12-22 | 2012-05-16 | ROAL Oy | Traitement de matériel cellulosique et enzymes pouvant être employées dans ce traitement |
| EP2319920A1 (fr) | 2005-12-22 | 2011-05-11 | ROAL Oy | Traitement de matériel cellulosique et enzymes pouvant être employées dans ce traitement |
| US8409836B2 (en) | 2005-12-22 | 2013-04-02 | Roal Oy | Treatment of cellulosic material and enzymes useful therein |
| US9758777B2 (en) | 2005-12-22 | 2017-09-12 | Roal Oy | Treatment of cellulosic material and enzymes useful therein |
| USRE45660E1 (en) | 2006-02-14 | 2015-09-01 | Bp Corporation North America Inc. | Xylanases, nucleic acids encoding them and methods for making and using them |
| US8043839B2 (en) | 2006-02-14 | 2011-10-25 | Verenium Corporation | Xylanases, nucleic acids encoding them and methods for making and using them |
| WO2008037757A1 (fr) | 2006-09-29 | 2008-04-03 | Novozymes A/S | Xylanases pour aliments pour animaux |
| US8486680B2 (en) | 2007-10-03 | 2013-07-16 | Bp Corporation North America Inc. | Xylanases, nucleic acids encoding them and methods for making and using them |
| USRE46733E1 (en) | 2007-10-03 | 2018-02-27 | Bp Corporation North America Inc. | Xylanases, nucleic acids encoding them and methods for making and using them |
| WO2010121933A1 (fr) * | 2009-04-22 | 2010-10-28 | Dsm Ip Assets B.V. | Procédé de production d'un polypeptide recombinant d'intérêt |
| US9012186B2 (en) | 2009-04-27 | 2015-04-21 | The Board Of Trustees Of The University Of Illinois | Hemicellulose-degrading enzymes |
| EP2678426A4 (fr) * | 2011-02-25 | 2015-03-25 | Univ Saskatchewan | Protéines pour la lutte biologique contre des champignons pathogènes de plantes |
| EP3061816A1 (fr) * | 2011-09-14 | 2016-08-31 | DuPont Nutrition Biosciences ApS | Utilisation d'enzymes avec activité endo-1,4-xylanase pour réduire du mauvais gout dans des produits |
| US9683224B2 (en) | 2011-09-14 | 2017-06-20 | Dupont Nutrition Biosciences Aps | Enzymes |
| EA027084B1 (ru) * | 2011-09-14 | 2017-06-30 | ДюПон НЬЮТРИШН БАЙОСАЙЕНСИЗ АпС | Ферменты |
| CN103814129A (zh) * | 2011-09-14 | 2014-05-21 | 杜邦营养生物科学有限公司 | 包含具有内切–1,4–β–木聚糖酶活性的酶和具有内切–1,3(4)–β葡聚糖酶活性的酶的组合物 |
| WO2013037933A3 (fr) * | 2011-09-14 | 2013-05-30 | Dupont Nutrition Biosciences Aps | Enzymes |
| AU2012307299B2 (en) * | 2011-09-14 | 2018-03-22 | International N&H Denmark Aps | Compositions comprising enzymes with endo - 1, 4 - beta - xylanase activity and enzymes with endo - 1, 3 (4) - beta glucanase activity |
| AU2012307299C1 (en) * | 2011-09-14 | 2018-10-25 | International N&H Denmark Aps | Compositions comprising enzymes with endo - 1, 4 - beta - xylanase activity and enzymes with endo - 1, 3 (4) - beta glucanase activity |
Also Published As
| Publication number | Publication date |
|---|---|
| AU7294396A (en) | 1997-04-30 |
| WO1997013853A3 (fr) | 1997-06-19 |
| EP0796328A2 (fr) | 1997-09-24 |
| JPH10510720A (ja) | 1998-10-20 |
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