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PE20181137A1 - Metodos moleculares de aseguramiento de la calidad para su uso en la secuenciacion - Google Patents

Metodos moleculares de aseguramiento de la calidad para su uso en la secuenciacion

Info

Publication number
PE20181137A1
PE20181137A1 PE2018000418A PE2018000418A PE20181137A1 PE 20181137 A1 PE20181137 A1 PE 20181137A1 PE 2018000418 A PE2018000418 A PE 2018000418A PE 2018000418 A PE2018000418 A PE 2018000418A PE 20181137 A1 PE20181137 A1 PE 20181137A1
Authority
PE
Peru
Prior art keywords
quality assurance
sequencing
assurance methods
molecular quality
methods
Prior art date
Application number
PE2018000418A
Other languages
English (en)
Inventor
Samuel Aparicio
Sohrab Shah
Rosalia Aguirre-Hernandez
Leah Prentice
Patrick Franchini
Jaswinder Singh Khattra
Tong He
Original Assignee
Contextual Genomics Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Contextual Genomics Inc filed Critical Contextual Genomics Inc
Publication of PE20181137A1 publication Critical patent/PE20181137A1/es

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6851—Quantitative amplification
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/686—Polymerase chain reaction [PCR]
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Immunology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Analytical Chemistry (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

La presente invencion se refiere a metodos de aseguramiento de la calidad para su uso en tecnicas de amplificacion, tales como la Secuenciacion de Proxima Generacion (NGS)
PE2018000418A 2015-09-25 2016-09-23 Metodos moleculares de aseguramiento de la calidad para su uso en la secuenciacion PE20181137A1 (es)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
US201562233074P 2015-09-25 2015-09-25

Publications (1)

Publication Number Publication Date
PE20181137A1 true PE20181137A1 (es) 2018-07-17

Family

ID=58386336

Family Applications (1)

Application Number Title Priority Date Filing Date
PE2018000418A PE20181137A1 (es) 2015-09-25 2016-09-23 Metodos moleculares de aseguramiento de la calidad para su uso en la secuenciacion

Country Status (14)

Country Link
US (3) US10934580B2 (es)
EP (1) EP3356382A4 (es)
JP (1) JP2018536430A (es)
KR (1) KR20180054834A (es)
CN (1) CN108137642A (es)
AU (1) AU2016326889B2 (es)
BR (1) BR112018005940A2 (es)
CA (1) CA2996479A1 (es)
CL (1) CL2018000756A1 (es)
CO (1) CO2018003878A2 (es)
HK (1) HK1255446A1 (es)
MX (1) MX2018003678A (es)
PE (1) PE20181137A1 (es)
WO (1) WO2017051387A1 (es)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11514289B1 (en) 2016-03-09 2022-11-29 Freenome Holdings, Inc. Generating machine learning models using genetic data
EP3460071A1 (en) * 2017-09-22 2019-03-27 Lexogen GmbH Estimating pre-pcr fragment numbers from post-pcr frequencies of unique molecular identifiers
CN109949866B (zh) * 2018-06-22 2021-02-02 深圳市达仁基因科技有限公司 病原体操作组的检测方法、装置、计算机设备和存储介质
EP3973530A4 (en) * 2019-05-20 2023-08-02 Foundation Medicine, Inc. SYSTEMS AND METHODS FOR EVALUATION OF TUMOR FRACTION
JP7371405B2 (ja) * 2019-09-12 2023-10-31 東ソー株式会社 核酸試料の品質評価方法
CN112501249B (zh) * 2019-09-16 2024-01-26 深圳市真迈生物科技有限公司 Rna文库的制备方法、测序方法和试剂盒
AU2021267389A1 (en) * 2020-05-08 2022-10-20 Illumina, Inc. Genome sequencing and detection techniques
CN111681711B (zh) * 2020-06-28 2021-03-16 江苏先声医学诊断有限公司 一种兼并引物的设计筛选方法
CN114005489B (zh) * 2021-12-28 2022-03-22 成都齐碳科技有限公司 基于三代测序数据检测点突变的分析方法和装置
WO2025079958A1 (ko) * 2023-10-11 2025-04-17 고려대학교 산학협력단 높은 처리량의 돌연변이 특이적 아답터 리게이션 방법

Family Cites Families (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7537897B2 (en) * 2006-01-23 2009-05-26 Population Genetics Technologies, Ltd. Molecular counting
JP5413952B2 (ja) * 2009-03-23 2014-02-12 公益財団法人がん研究会 網羅的ゲノムワイドｓｎｐ情報に基づくエピスタシス効果の探索アルゴリズム
JP2011186632A (ja) * 2010-03-05 2011-09-22 Nec Software Kyushu Ltd 塩基配列集合算出装置、塩基配列集合算出方法およびコンピュータプログラム
US9255291B2 (en) * 2010-05-06 2016-02-09 Bioo Scientific Corporation Oligonucleotide ligation methods for improving data quality and throughput using massively parallel sequencing
EP2820174B1 (en) * 2012-02-27 2019-12-25 The University of North Carolina at Chapel Hill Methods and uses for molecular tags
ES2822125T3 (es) * 2013-12-28 2021-04-29 Guardant Health Inc Métodos y sistemas para detectar variantes genéticas
EP3097206A1 (en) * 2014-01-22 2016-11-30 Adam Platt Methods and systems for detecting genetic mutations
CN104762399A (zh) * 2015-04-17 2015-07-08 上海产业技术研究院 肿瘤循环dna kras突变检测方法

Also Published As

Publication number Publication date
HK1255446A1 (zh) 2019-08-16
US20180258479A1 (en) 2018-09-13
CL2018000756A1 (es) 2018-09-28
KR20180054834A (ko) 2018-05-24
AU2016326889B2 (en) 2021-03-25
WO2017051387A1 (en) 2017-03-30
EP3356382A4 (en) 2019-04-03
JP2018536430A (ja) 2018-12-13
AU2016326889A1 (en) 2018-03-15
BR112018005940A2 (pt) 2018-12-11
CO2018003878A2 (es) 2018-11-30
US10934580B2 (en) 2021-03-02
EP3356382A1 (en) 2018-08-08
CA2996479A1 (en) 2017-03-30
CN108137642A (zh) 2018-06-08
US20210155980A1 (en) 2021-05-27
US20240409990A1 (en) 2024-12-12
MX2018003678A (es) 2018-08-01

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