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HK1233301B - Compositions for modulating sod-1 expression - Google Patents

Compositions for modulating sod-1 expression Download PDF

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Publication number
HK1233301B
HK1233301B HK17106942.7A HK17106942A HK1233301B HK 1233301 B HK1233301 B HK 1233301B HK 17106942 A HK17106942 A HK 17106942A HK 1233301 B HK1233301 B HK 1233301B
Authority
HK
Hong Kong
Prior art keywords
eeekkdddddddkkeee
isis
sod
certain instances
antisense compound
Prior art date
Application number
HK17106942.7A
Other languages
German (de)
French (fr)
Chinese (zh)
Other versions
HK1233301A1 (en
Inventor
E. Swayze Eric
COLE Tracy
Kordasiewicz Holly
M. Freier Susan
P. Condon Thomas
Wancewicz Edward
Lockhart Trisha
Vickers Timothy
Singh Priyam
Original Assignee
Biogen Ma Inc.
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Biogen Ma Inc. filed Critical Biogen Ma Inc.
Publication of HK1233301A1 publication Critical patent/HK1233301A1/en
Publication of HK1233301B publication Critical patent/HK1233301B/en

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Description

Field
Disclosed are compositions and methods for reducing expression of superoxide dismutase 1, soluble (SOD-1) mRNA and protein in an animal. Such methods are useful to treat, prevent, or ameliorate neurodegenerative diseases, including amyotrophic lateral sclerosis (ALS) by inhibiting expression of SOD-1 in an animal.
Background
The soluble SOD-1 enzyme (also known as Cu/Zn superoxide dismutase) is one of the superoxide dismutases that provide defense against oxidative damage of biomolecules by catalyzing the dismutation of superoxide to hydrogen peroxide (H2O2) (Fridovich, Annu. Rev. Biochem., 1995, 64, 97-112). The superoxide anion (O2-) is a potentially harmful cellular by-product produced primarily by errors of oxidative phosphorylation in mitochondria (Turrens, J. Physiol. 2003, 552, 335-344)
Mutations in the SOD-1 gene are associated with a dominantly-inherited form of amyotrophic lateral sclerosis (ALS, also known as Lou Gehrig's disease) a disorder characterized by a selective degeneration of upper and lower motor neurons (Rowland, N. Engl. J. Med. 2001, 344, 1688-1700). There is a tight genetic linkage between familial ALS and missense mutations in the SOD1 gene (Rosen, Nature, 1993, 362, 59-62). The toxicity of mutant SOD1 is believed to arise from an initial misfolding (gain of function) reducing nuclear protection from the active enzyme (loss of function in the nuclei), a process that may be involved in ALS pathogenesis (Sau, Hum. Mol. Genet. 2007, 16, 1604-1618).
ALS is a devastating progressive neurodegenerative disease affecting as many as 30,000 Americans at any given time. The progressive degeneration of the motor neurons in ALS eventually leads to their death. When the motor neurons die, the ability of the brain to initiate and control muscle movement is lost. With voluntary muscle action progressively affected, patients in the later stages of the disease may become totally paralyzed.
Currently lacking are acceptable options for treating such neurodegenerative diseases. It is therefore an object herein to provide compounds and compositions for use in treating such diseases.
WO 2009/102427 relates to modified RNAi constructs with optimal biological activity, toxicity, stability and target gene specificity and uses thereof.
WO 2006/066203 relates to double stranded small interfering RNA (siRNA) molecules for modulating a SOD gene in subjects with neurological disorders.
US 2009/130195 relates to methods of treating prostate cancer using compounds comprising small siRNA molecules to inhibit PKC expression.
Summary of the Invention
The present invention provides an antisense compound according to the following formula: mCes Aeo Ges Geo Aes Tds Ads mCds Ads Tds Tds Tds mCds Tds Ads mCeo Aes Geo mCes Te (nucleobase sequence of SEQ ID NO: 725) wherein,
A =
an adenine,
mC =
a 5-methylcytosine,
G =
a guanine,
T =
a thymine,
e =
a 2'-O-methoxyethylribose modified sugar,
d =
a 2'-deoxyribose sugar,
s =
a phosphorothioate internucleoside linkage, and
o =
a phosphodiester internucleoside linkage;
or a pharmaceutically acceptable salt thereof.
The invention also provides a pharmaceutical composition comprising the antisense compound or the pharmaceutically acceptable salt thereof of the invention and at least one of a pharmaceutically acceptable carrier or diluent.
The invention further provides the antisense compound or the pharmaceutically acceptable salt thereof or the pharmaceutical composition of the invention, for use in therapy in a human subject.
The invention also provides the antisense compound or the pharmaceutically acceptable salt thereof or the pharmaceutical composition of the invention, for use in treating or preventing a SOD-1 associated disease.
Summary of the Disclosure
Described herein are methods, compounds, and compositions for modulating expression of superoxide dismutase 1, soluble (SOD-1) mRNA and protein. In certain instances, compounds useful for modulating expression of SOD-1 mRNA and protein are antisense compounds. In certain instances, the antisense compounds are modified oligonucleotides.
In certain instances, modulation can occur in a cell or tissue. In certain instances, the cell or tissue is in an animal. In certain instances, the animal is a human. In certain instances, SOD-1 mRNA levels are reduced. In certain instances, SOD-1 protein levels are reduced. Such reduction can occur in a time-dependent manner or in a dose-dependent manner.
Also described are methods, compounds, and compositions useful for preventing, treating, and ameliorating diseases, disorders, and conditions. In certain instances, such SOD-1 related diseases, disorders, and conditions are neurodegenerative diseases. In certain instances, such neurodegenerative diseases, disorders, and conditions include amyotrophic lateral sclerosis (ALS).
Such diseases, disorders, and conditions can have one or more risk factors, causes, or outcomes in common. Certain risk factors and causes for development of ALS include growing older, having a personal or family history, or genetic predisposition. However, the majority of ALS cases are sporadic and no known risk factors are known. Certain symptoms and outcomes associated with development of ALS include but are not limited to: fasciculations, cramps, tight and stiff muscles (spasticity), muscle weakness affecting an arm or a leg, slurred and nasal speech, difficulty walking, difficulty chewing or swallowing (dysphagia), difficulty speaking or forming words (dysarthria), weakness or atrophy, spasticity, exaggerated reflexes (hyperreflexia), and presence of Babinski's sign. As ALS progresses, symptoms and outcomes by include weakening of other limbs, perhaps accompanied by twitching, muscle cramping, and exaggerated, faster reflexes; problems with chewing, swallowing, and breathing; drooling may occur; eventual paralysis; and death.
In certain instances, methods of treatment include administering an SOD-1 antisense compound to an individual in need thereof. In certain instances, methods of treatment include administering an SOD-1 modified oligonucleotide to an individual in need thereof.
Detailed Description
It is to be understood that both the foregoing general description and the following detailed description are exemplary and explanatory only and are not restrictive of the invention, as claimed. Herein, the use of the singular includes the plural unless specifically stated otherwise. As used herein, the use of "or" means "and/or" unless stated otherwise. Additionally, as used herein, the use of "and" means "and/or" unless stated otherwise. Furthermore, the use of the term "including" as well as other forms, such as "includes" and "included", is not limiting. Also, terms such as "element" or "component" encompass both elements and components comprising one unit and elements and components that comprise more than one subunit, unless specifically stated otherwise. Also, all sequences described herein are listed 5' to 3', unless otherwise stated.
The section headings used herein are for organizational purposes only and are not to be construed as limiting the subject matter described.
Definitions
Unless specific definitions are provided, the nomenclature utilized in connection with, and the procedures and techniques of, analytical chemistry, synthetic organic chemistry, and medicinal and pharmaceutical chemistry described herein are those well known and commonly used in the art. Standard techniques may be used for chemical synthesis, and chemical analysis.
Unless otherwise indicated, the following terms have the following meanings:
  • "2'-deoxynucleoside" (also 2'-deoxyribonucleoside) means a nucleoside comprising 2'-H furanosyl sugar moiety, as found in naturally occurring deoxyribonucleosides (DNA). In certain instances, a 2'-deoxynucleoside may comprise a modified nucleobase or may comprise an RNA nucleobase (e.g., uracil).
  • "2'-deoxyribose sugar" means a 2'-H furanosyl sugar moiety, as found in naturally occurring deoxyribonucleic acids (DNA).
  • "2'-O-methoxyethyl" (also 2'-MOE and 2'-OCH2CH2-OCH3 and MOE and 2'-O-methoxyethylribose) refers to an O-methoxy-ethyl modification of the 2' position of a furanose ring. A 2'-O-methoxyethylribose modified sugar is a modified sugar.
  • "2'-O-methoxyethylribose modified nucleoside" (also2'-MOE nucleoside) means a nucleoside comprising a 2'-MOE modified sugar moiety.
  • "2'-substituted nucleoside" means a nucleoside comprising a substituent at the 2'-position of the furanose ring other than H or OH. In certain instances, 2' substituted nucleosides include nucleosides with bicyclic sugar modifications.
  • "5-methylcytosine" means a cytosine modified with a methyl group attached to the 5 position. A 5-methylcytosine is a modified nucleobase.
"About" means within ±10% of a value. For example, if it is stated, "the compounds affected at least about 50% inhibition of SOD-1", it is implied that the SOD-1 levels are inhibited within a range of 45% and 55%. "Administered concomitantly" refers to the co-administration of two pharmaceutical agents in any manner in which the pharmacological effects of both are manifest in the patient at the same time. Concomitant administration does not require that both pharmaceutical agents be administered in a single pharmaceutical composition, in the same dosage form, or by the same route of administration. The effects of both pharmaceutical agents need not manifest themselves at the same time. The effects need only be overlapping for a period of time and need not be coextensive.
"Administering" means providing a pharmaceutical agent to an animal, and includes, but is not limited to administering by a medical professional and self-administering.
"Amelioration" refers to a lessening, slowing, stopping, or reversing of at least one indicator of the severity of a condition or disease. The severity of indicators may be determined by subjective or objective measures, which are known to those skilled in the art.
"Animal" refers to a human or non-human animal, including, but not limited to, mice, rats, rabbits, dogs, cats, pigs, and non-human primates, including, but not limited to, monkeys and chimpanzees.
"Antibody" refers to a molecule characterized by reacting specifically with an antigen in some way, where the antibody and the antigen are each defined in terms of the other. Antibody may refer to a complete antibody molecule or any fragment or region thereof, such as the heavy chain, the light chain, Fab region, and Fc region.
"Antisense activity" means any detectable or measurable activity attributable to the hybridization of an antisense compound to its target nucleic acid. In certain instances, antisense activity is a decrease in the amount or expression of a target nucleic acid or protein encoded by such target nucleic acid.
"Antisense compound" means an oligomeric compound that is capable of undergoing hybridization to a target nucleic acid through hydrogen bonding. Examples of antisense compounds include single-stranded and double-stranded compounds, such as, antisense oligonucleotides, siRNAs, shRNAs, ssRNAs, and occupancy-based compounds.
"Antisense inhibition" means reduction of target nucleic acid levels in the presence of an antisense compound complementary to a target nucleic acid compared to target nucleic acid levels or in the absence of the antisense compound.
"Antisense mechanisms" are all those mechanisms involving hybridization of a compound with a target nucleic acid, wherein the outcome or effect of the hybridization is either target degradation or target occupancy with concomitant stalling of the cellular machinery involving, for example, transcription or splicing.
"Antisense oligonucleotide" means a single-stranded oligonucleotide having a nucleobase sequence that permits hybridization to a corresponding segment of a target nucleic acid.
"Base complementarity" refers to the capacity for the precise base pairing of nucleobases of an oligonucleotide with corresponding nucleobases in a target nucleic acid (i.e., hybridization), and is mediated by Watson-Crick, Hoogsteen or reversed Hoogsteen hydrogen binding between corresponding nucleobases.
"Bicyclic sugar" means a furanose ring modified by the bridging of two atoms. A bicyclic sugar is a modified sugar.
"Bicyclic nucleic acid" or "BNA" refers to a nucleoside or nucleotide wherein the furanose portion of the nucleoside or nucleotide includes a bridge connecting two carbon atoms on the furanose ring, thereby forming a bicyclic ring system.
"Cap structure" or "terminal cap moiety" means chemical modifications, which have been incorporated at either terminus of an antisense compound.
"cEt" or "constrained ethyl" or "cEt modified sugar" means a bicyclic nucleoside having a sugar moiety comprising a bridge connecting the 4'-carbon and the 2'-carbon, wherein the bridge has the formula: 4'-CH(CH3)-O-2'. A cEt modified sugar is a modified sugar.
"cEt modified nucleoside" means a bicyclic nucleoside having a sugar moiety comprising a bridge connecting the 4'-carbon and the 2'-carbon, wherein the bridge has the formula: 4'-CH(CH3)-O-2'. A cEt modified sugar is a modified sugar.
"Chemically distinct region" refers to a region of an antisense compound that is in some way chemically different than another region of the same antisense compound. For example, a region having 2'-O-methoxyethyl nucleosides is chemically distinct from a region having nucleosides without 2'-O-methoxyethyl modifications.
"Chimeric antisense compound" means an antisense compound that has at least two chemically distinct regions, each position having a plurality of subunits.
"Co-administration" means administration of two or more pharmaceutical agents to an individual. The two or more pharmaceutical agents may be in a single pharmaceutical composition, or may be in separate pharmaceutical compositions. Each of the two or more pharmaceutical agents may be administered through the same or different routes of administration. Co-administration encompasses parallel or sequential administration.
"Complementarity" means the capacity for pairing between nucleobases of a first nucleic acid and a second nucleic acid.
"Comprise," "comprises," and "comprising" will be understood to imply the inclusion of a stated step or element or group of steps or elements but not the exclusion of any other step or element or group of steps or elements.
"Contiguous nucleobases" means nucleobases immediately adjacent to each other. "Designing" or "designed to" refer to the process of designing an oligomeric compound that specifically hybridizes with a selected nucleic acid molecule.
"Diluent" means an ingredient in a composition that lacks pharmacological activity, but is pharmaceutically necessary or desirable. For example, in drugs that are injected, the diluent may be a liquid, e.g. saline solution.
"Dose" means a specified quantity of a pharmaceutical agent provided in a single administration, or in a specified time period. In certain instances, a dose may be administered in one, two, or more boluses, tablets, or injections. For example, in certain instances where subcutaneous administration is desired, the desired dose requires a volume not easily accommodated by a single injection, therefore, two or more injections may be used to achieve the desired dose. In certain instances, the pharmaceutical agent is administered by infusion over an extended period of time or continuously. Doses may be stated as the amount of pharmaceutical agent per hour, day, week, or month.
"Effective amount" in the context of modulating an activity or of treating or preventing a condition means the administration of that amount of pharmaceutical agent to a subject in need of such modulation, treatment, or prophylaxis, either in a single dose or as part of a series, that is effective for modulation of that effect, or for treatment or prophylaxis or improvement of that condition. The effective amount may vary among individuals depending on the health and physical condition of the individual to be treated, the taxonomic group of the individuals to be treated, the formulation of the composition, assessment of the individual's medical condition, and other relevant factors.
"Efficacy" means the ability to produce a desired effect.
"Expression" includes all the functions by which a gene's coded information is converted into structures present and operating in a cell. Such structures include, but are not limited to the products of transcription and translation.
"Fully complementary" or "100% complementary" means each nucleobase of a first nucleic acid has a complementary nucleobase in a second nucleic acid. In certain instances, a first nucleic acid is an antisense compound and a target nucleic acid is a second nucleic acid.
"Gapmer" means a chimeric antisense compound in which an internal region having a plurality of nucleosides that support RNase H cleavage is positioned between external regions having one or more nucleosides, wherein the nucleosides comprising the internal region are chemically distinct from the nucleoside or nucleosides comprising the external regions. The internal region may be referred to as a "gap" and the external regions may be referred to as the "wings."
"Gap-narrowed" means a chimeric antisense compound having a gap segment of 9 or fewer contiguous 2'-deoxyribonucleosides positioned between and immediately adjacent to 5' and 3' wing segments having from 1 to 6 nucleosides.
"Gap-widened" means a chimeric antisense compound having a gap segment of 12 or more contiguous 2'-deoxyribonucleosides positioned between and immediately adjacent to 5' and 3' wing segments having from 1 to 6 nucleosides.
"Hybridization" means the annealing of complementary nucleic acid molecules. In certain instances, complementary nucleic acid molecules include, but are not limited to, an antisense compound and a target nucleic acid. In certain instances, complementary nucleic acid molecules include, but are not limited to, an oligonucleotide and a nucleic acid target.
"Identifying an animal having a SOD-1 associated disease" means identifying an animal having been diagnosed with a SOD-1 associated disease or predisposed to develop a SOD-1 associated disease. Individuals predisposed to develop a SOD-1 associated disease include those having one or more risk factors for developing a SOD-1 associated disease, including, growing older, having a personal or family history, or genetic predisposition of one or more SOD-1 associated diseases. Such identification may be accomplished by any method including evaluating an individual's medical history and standard clinical tests or assessments, such as genetic testing.
"Immediately adjacent" means there are no intervening elements between the immediately adjacent elements.
"Individual" means a human or non-human animal selected for treatment or therapy.
"Inhibiting SOD-1" means reducing the level or expression of a SOD-1 mRNA and/or protein. In certain instances, SOD-1 mRNA and/or protein levels are inhibited in the presence of an antisense compound targeting SOD-1, including a modified oligonucleotide targeting SOD-1, as compared to expression of SOD-1 mRNA and/or protein levels in the absence of a SOD-1 antisense compound, such as a modified oligonucleotide.
"Inhibiting the expression or activity" refers to a reduction or blockade of the expression or activity and does not necessarily indicate a total elimination of expression or activity.
"Internucleoside linkage" refers to the chemical bond between nucleosides. "Linked nucleosides" means adjacent nucleosides linked together by an internucleoside linkage.
"Mismatch" or "non-complementary nucleobase" refers to the case when a nucleobase of a first nucleic acid is not capable of pairing with the corresponding nucleobase of a second or target nucleic acid.
"Mixed backbone" means a pattern of internucleoside linkages including at least two different internucleoside linkages. For example, an oligonucleotide with a mixed backbone may include at least one phosphodiester linkage and at least one phosphorothioate linkage.
"Modified internucleoside linkage" refers to a substitution or any change from a naturally occurring internucleoside bond (i.e., a phosphodiester internucleoside bond).
"Modified nucleobase" means any nucleobase other than adenine, cytosine, guanine, thymidine, or uracil. An "unmodified nucleobase" means the purine bases adenine (A) and guanine (G), and the pyrimidine bases thymine (T), cytosine (C), and uracil (U).
A "modified nucleoside" means a nucleoside having, independently, a modified sugar moiety and/or modified nucleobase.
"Modified nucleotide" means a nucleotide having, independently, a modified sugar moiety, modified internucleoside linkage, and/or modified nucleobase.
"Modified oligonucleotide" means an oligonucleotide comprising at least one modified internucleoside linkage, modified sugar, and/or modified nucleobase.
"Modified sugar" means substitution and/or any change from a natural sugar moiety.
"Monomer" means a single unit of an oligomer. Monomers include, but are not limited to, nucleosides and nucleotides, whether naturally occurring or modified.
"Motif" means the pattern of unmodified and modified nucleosides in an antisense compound.
"Natural sugar moiety" means a sugar moiety found in DNA (2'-H) or RNA (2'-OH).
"Naturally occurring internucleoside linkage" means a 3' to 5' phosphodiester linkage.
"Non-complementary nucleobase" refers to a pair of nucleobases that do not form hydrogen bonds with one another or otherwise support hybridization.
"Nucleic acid" refers to molecules composed of monomeric nucleotides. A nucleic acid includes, but is not limited to, ribonucleic acids (RNA), deoxyribonucleic acids (DNA), single-stranded nucleic acids, double-stranded nucleic acids, small interfering ribonucleic acids (siRNA), and microRNAs (miRNA).
"Nucleobase" means a heterocyclic moiety capable of pairing with a base of another nucleic acid.
"Nucleobase complementarity" refers to a nucleobase that is capable of base pairing with another nucleobase. For example, in DNA, adenine (A) is complementary to thymine (T). For example, in RNA, adenine (A) is complementary to uracil (U). In certain instances, complementary nucleobase refers to a nucleobase of an antisense compound that is capable of base pairing with a nucleobase of its target nucleic acid. For example, if a nucleobase at a certain position of an antisense compound is capable of hydrogen bonding with a nucleobase at a certain position of a target nucleic acid, then the position of hydrogen bonding between the oligonucleotide and the target nucleic acid is considered to be complementary at that nucleobase pair.
"Nucleobase sequence" means the order of contiguous nucleobases independent of any sugar, linkage, and/or nucleobase modification.
"Nucleoside" means a nucleobase linked to a sugar.
"Nucleoside mimetic" includes those structures used to replace the sugar or the sugar and the base and not necessarily the linkage at one or more positions of an oligomeric compound such as for example nucleoside mimetics having morpholino, cyclohexenyl, cyclohexyl, tetrahydropyranyl, bicyclo, or tricyclo sugar mimetics, e.g., non furanose sugar units. Nucleotide mimetic includes those structures used to replace the nucleoside and the linkage at one or more positions of an oligomeric compound such as for example peptide nucleic acids or morpholinos (morpholinos linked by -N(H)-C(=O)-O- or other non-phosphodiester linkage). Sugar surrogate overlaps with the slightly broader term nucleoside mimetic but is intended to indicate replacement of the sugar unit (furanose ring) only. The tetrahydropyranyl rings provided herein are illustrative of an example of a sugar surrogate wherein the furanose sugar group has been replaced with a tetrahydropyranyl ring system. "Mimetic" refers to groups that are substituted for a sugar, a nucleobase, and/or internucleoside linkage. Generally, a mimetic is used in place of the sugar or sugar-internucleoside linkage combination, and the nucleobase is maintained for hybridization to a selected target.
"Nucleotide" means a nucleoside having a phosphate group covalently linked to the sugar portion of the nucleoside.
"Off-target effect" refers to an unwanted or deleterious biological effect associated with modulation of RNA or protein expression of a gene other than the intended target nucleic acid.
"Oligomeric compound" or "oligomer" means a polymer of linked monomeric subunits which is capable of hybridizing to at least a region of a nucleic acid molecule.
"Oligonucleotide" means a polymer of linked nucleosides each of which can be modified or unmodified, independent one from another.
"Parenteral administration" means administration through injection (e.g., bolus injection) or infusion. Parenteral administration includes subcutaneous administration, intravenous administration, intramuscular administration, intraarterial administration, intraperitoneal administration, or intracranial administration, e.g., intrathecal or intracerebroventricular administration.
"Peptide" means a molecule formed by linking at least two amino acids by amide bonds. Without limitation, as used herein, peptide refers to polypeptides and proteins.
"Pharmaceutical agent" means a substance that provides a therapeutic benefit when administered to an individual. For example, in certain instances, a modified oligonucleotide targeted to SOD-1 is a pharmaceutical agent.
"Pharmaceutical composition" means a mixture of substances suitable for administering to a subject. For example, a pharmaceutical composition may comprise a modified oligonucleotide and a sterile aqueous solution.
"Pharmaceutically acceptable derivative" encompasses pharmaceutically acceptable salts, conjugates, prodrugs or isomers of the compounds described herein.
"Pharmaceutically acceptable salts" means physiologically and pharmaceutically acceptable salts of antisense compounds, i.e., salts that retain the desired biological activity of the parent oligonucleotide and do not impart undesired toxicological effects thereto.
"Phosphorothioate linkage" means a linkage between nucleosides where the phosphodiester bond is modified by replacing one of the non-bridging oxygen atoms with a sulfur atom. A phosphorothioate linkage is a modified internucleoside linkage.
"Portion" means a defined number of contiguous (i.e., linked) nucleobases of a nucleic acid. In certain instances, a portion is a defined number of contiguous nucleobases of a target nucleic acid. In certain instance, a portion is a defined number of contiguous nucleobases of an antisense compound.
"Prevent" or "preventing" refers to delaying or forestalling the onset or development of a disease, disorder, or condition for a period of time from minutes to days, weeks to months, or indefinitely.
"Prodrug" means a therapeutic agent that is prepared in an inactive form that is converted to an active form (i.e., drug) within the body or cells thereof by the action of endogenous enzymes or other chemicals and/or conditions.
"Prophylactically effective amount" refers to an amount of a pharmaceutical agent that provides a prophylactic or preventative benefit to an animal.
"Region" is defined as a portion of the target nucleic acid having at least one identifiable structure, function, or characteristic.
"Ribonucleotide" means a nucleotide having a hydroxy at the 2' position of the sugar portion of the nucleotide. Ribonucleotides may be modified with any of a variety of substituents.
"Salts" mean a physiologically and pharmaceutically acceptable salts of antisense compounds, i.e., salts that retain the desired biological activity of the parent oligonucleotide and do not impart undesired toxicological effects thereto.
"Segments" are defined as smaller or sub-portions of regions within a target nucleic acid.
"Shortened" or "truncated" versions of oligonucleotides SOD-1ght herein have one, two or more nucleosides deleted.
"Side effects" means physiological responses attributable to a treatment other than desired effects. In certain instances, side effects include, without limitation, injection site reactions, liver function test abnormalities, renal function abnormalities, liver toxicity, renal toxicity, central nervous system abnormalities, and myopathies.
"Single-stranded oligonucleotide" means an oligonucleotide which is not hybridized to a complementary strand.
"Sites," as used herein, are defined as unique nucleobase positions within a target nucleic acid. "Slows progression" means decrease in the development of the disease.
"SOD-1" means the mammalian gene superoxide dismutase 1, soluble (SOD-1), including the human gene superoxide dismutase 1, soluble (SOD-1).
"SOD-1 associated disease" means any disease associated with any SOD-1 nucleic acid or expression product thereof. Such diseases may include a neurodegenerative disease. Such neurodegenerative diseases may include amyotrophic lateral sclerosis (ALS).
"SOD-1 mRNA" means any messenger RNA expression product of a DNA sequence encoding SOD-1.
"SOD-1 nucleic acid" means any nucleic acid encoding SOD-1. For example, in certain instances, a SOD-1 nucleic acid includes a DNA sequence encoding SOD-1, an RNA sequence transcribed from DNA encoding SOD-1 (including genomic DNA comprising introns and exons), and a mRNA sequence encoding SOD-1. "SOD-1 mRNA" means a mRNA encoding a SOD-1 protein.
"SOD-1 protein" means the polypeptide expression product of a SOD-1 nucleic acid.
"Specifically hybridizable" refers to an antisense compound having a sufficient degree of complementarity between an oligonucleotide and a target nucleic acid to induce a desired effect, while exhibiting minimal or no effects on non-target nucleic acids under conditions in which specific binding is desired, i.e., under physiological conditions in the case of in vivo assays and therapeutic treatments.
"Stringent hybridization conditions" or "stringent conditions" refer to conditions under which an oligomeric compound will hybridize to its target sequence, but to a minimal number of other sequences.
"Subject" means a human or non-human animal selected for treatment or therapy.
"Sugar chemistry motif" means a pattern of sugar modifications including at least two different sugar modifications. For example, an oligonucleotide with a mixed backbone may include at least one 2'-O-methoxyethyl modified nucleoside, and/or one cEt modified nucleoside, and/or one 2'-deoxynucleoside.
"Target" refers to a protein, the modulation of which is desired.
"Target gene" refers to a gene encoding a target.
"Targeting" or "targeted" means the process of design and selection of an antisense compound that will specifically hybridize to a target nucleic acid and induce a desired effect.
"Target nucleic acid," "target RNA," and "target RNA transcript" and "nucleic acid target" all mean a nucleic acid capable of being targeted by antisense compounds.
"Target region" means a portion of a target nucleic acid to which one or more antisense compounds is targeted.
"Target segment" means the sequence of nucleotides of a target nucleic acid to which an antisense compound is targeted. "5' target site" refers to the 5'-most nucleotide of a target segment. "3' target site" refers to the 3'-most nucleotide of a target segment.
"Therapeutically effective amount" means an amount of a pharmaceutical agent that provides a therapeutic benefit to an individual.
"Treat" or "treating" or "treatment" refers administering a composition to effect an alteration or improvement of the disease or condition.
"Unmodified nucleobases" mean the purine bases adenine (A) and guanine (G), and the pyrimidine bases thymine (T), cytosine (C) and uracil (U).
"Unmodified nucleotide" means a nucleotide composed of naturally occuring nucleobases, sugar moieties, and internucleoside linkages. In certain instances, an unmodified nucleotide is an RNA nucleotide (i.e. β-D-ribonucleosides) or a DNA nucleotide (i.e. β-D-deoxyribonucleoside).
"Wing segment" means a plurality of nucleosides modified to impart to an oligonucleotide properties such as enhanced inhibitory activity, increased binding affinity for a target nucleic acid, or resistance to degradation by in vivo nucleases.
Certain Instances
Certain instances herein are methods, compounds, and compositions for inhibiting SOD-1 mRNA and protein expression. Certain instances herein are methods, compounds, and composition for decreasing SOD-1 mRNA and protein levels.
Certain instances are antisense compounds targeted to a SOD-1 nucleic acid. In certain instances, the SOD-1 nucleic acid is the sequence set forth in GENBANK Accession No. NM_000454.4 (incorporated herein as SEQ ID NO: 1), GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000 (incorporated herein as SEQ ID NO: 2), and the complement of GENBANK Accession No. NW_001114168.1 truncated from nucleotides 2258000 to 2271000 (incorporated herein as SEQ ID NO: 3).
Certain instances are methods for the treatment, prevention, or amelioration of diseases, disorders, and conditions associated with SOD-1 in an individual in need thereof. Also contemplated are methods for the preparation of a medicament for the treatment, prevention, or amelioration of a disease, disorder, or condition associated with SOD-1. SOD-1 associated diseases, disorders, and conditions include neurodegenerative diseases. In certain instances, SOD-1 associated diseases include amyotrophic lateral sclerosis (ALS).
An exemplary instance is a compound consisting of a modified oligonucleotide according to the following formula:
An exemplary instance is therefore a compound consisting of a modified oligonucleotide according to the following formula: mCes Aeo Ges Geo Aes Tds Ads mCds Ads Tds Tds Tds mCds Tds Ads mCeo Aes Geo mCes Te; wherein,
A =
an adenine,
mC =
a 5-methylcytosine,
G =
a guanine,
T =
a thymine,
e =
a 2'-O-methoxyethylribose modified sugar,
d =
a 2'-deoxyribose sugar,
s =
a phosphorothioate internucleoside linkage, and
o =
a phosphodiester internucleoside linkage.
Another exemplary instance is a composition comprising the compound or salt thereof and at least one of a pharmaceutically acceptable carrier or diluent. Another exemplary instance is the use of the compound or composition for the manufacture of a medicament for treating a neurodegenerative disorder. An exemplary instance is therefore the use of the compound or composition for the manufacture of a medicament for treating ALS.
Antisense Compounds
Oligomeric compounds include, but are not limited to, oligonucleotides, oligonucleosides, oligonucleotide analogs, oligonucleotide mimetics, antisense compounds, antisense oligonucleotides, modified oligonucleotides, and siRNAs. An oligomeric compound may be "antisense" to a target nucleic acid, meaning that is is capable of undergoing hybridization to a target nucleic acid through hydrogen bonding.
In certain instances, an antisense compound has a nucleobase sequence that, when written in the 5' to 3' direction, comprises the reverse complement of the target segment of a target nucleic acid to which it is targeted. In certain such instances, an oligonucleotide has a nucleobase sequence that, when written in the 5' to 3' direction, comprises the reverse complement of the target segment of a target nucleic acid to which it is targeted.
In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 12 to 30 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 12 to 25 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 12 to 22 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 14 to 20 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 15 to 25 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 18 to 22 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 19 to 21 subunits in length. In certain instances, the antisense compound is 8 to 80, 12 to 50, 13 to 30, 13 to 50, 14 to 30, 14 to 50, 15 to 30, 15 to 50, 16 to 30, 16 to 50, 17 to 30, 17 to 50, 18 to 30, 18 to 50, 19 to 30, 19 to 50, or 20 to 30 linked subunits in length.
In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 12 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 13 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 14 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 15 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 16 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 17 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 18 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 19 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 20 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 21 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 22 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 23 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 24 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 25 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 26 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 27 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 28 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 29 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 30 subunits in length. In certain instances, the antisense compound targeted to a SOD-1 nucleic acid is 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, or 80 linked subunits in length, or a range defined by any two of the above values. In certain instances the antisense compound is a modified oligonucleotide, and the linked subunits are nucleosides.
In certain instances, oligonucleotides targeted to a SOD-1 nucleic acid may be shortened or truncated. For example, a single subunit may be deleted from the 5' end (5' truncation), or alternatively from the 3' end (3' truncation). A shortened or truncated antisense compound targeted to a SOD-1 nucleic acid may have two subunits deleted from the 5' end, or alternatively may have two subunits deleted from the 3' end, of the antisense compound. Alternatively, the deleted nucleosides may be dispersed throughout the antisense compound, for example, in an antisense compound having one nucleoside deleted from the 5' end and one nucleoside deleted from the 3' end.
When a single additional subunit is present in a lengthened antisense compound, the additional subunit may be located at the 5' or 3' end of the antisense compound. When two or more additional subunits are present, the added subunits may be adjacent to each other, for example, in an antisense compound having two subunits added to the 5' end (5' addition), or alternatively to the 3' end (3' addition), of the antisense compound. Alternatively, the added subunits may be dispersed throughout the antisense compound, for example, in an antisense compound having one subunit added to the 5' end and one subunit added to the 3' end.
It is possible to increase or decrease the length of an antisense compound, such as a modified oligonucleotide, and/or introduce mismatch bases without eliminating activity. For example, in Woolf et al. (Proc. Natl. Acad. Sci. USA 89:7305-7309, 1992), a series of oligonucleotides 13-25 nucleobases in length were tested for their ability to induce cleavage of a target RNA in an oocyte injection model. Oligonucleotides 25 nucleobases in length with 8 or 11 mismatch bases near the ends of the oligonucleotides were able to direct specific cleavage of the target mRNA, albeit to a lesser extent than oligonucleotides that contained no mismatches. Similarly, target specific cleavage was achieved using 13 nucleobase oligonucleotides, including those with 1 or 3 mismatches.
Gautschi et al (J. Natl. Cancer Inst. 93:463-471, March 2001) demonstrated the ability of an oligonucleotide having 100% complementarity to the bcl-2 mRNA and having 3 mismatches to the bcl-xL mRNA to reduce the expression of both bcl-2 and bcl-xL in vitro and in vivo. Furthermore, this oligonucleotide demonstrated potent anti-tumor activity in vivo.
Maher and Dolnick (Nuc. Acid. Res. 16:3341-3358,1988) tested a series of tandem 14 nucleobase oligonucleotides, and a 28 and 42 nucleobase oligonucleotides comprised of the sequence of two or three of the tandem oligonucleotides, respectively, for their ability to arrest translation of human DHFR in a rabbit reticulocyte assay. Each of the three 14 nucleobase oligonucleotides alone was able to inhibit translation, albeit at a more modest level than the 28 or 42 nucleobase oligonucleotides.
Antisense Compound Motifs
In certain instances, antisense compounds targeted to a SOD-1 nucleic acid have chemically modified subunits arranged in patterns, or motifs, to confer to the antisense compounds properties such as enhanced inhibitory activity, increased binding affinity for a target nucleic acid, or resistance to degradation by in vivo nucleases.
Chimeric antisense compounds typically contain at least one region modified so as to confer increased resistance to nuclease degradation, increased cellular uptake, increased binding affinity for the target nucleic acid, and/or increased inhibitory activity. A second region of a chimeric antisense compound may optionally serve as a substrate for the cellular endonuclease RNase H, which cleaves the RNA strand of an RNA:DNA duplex.
Antisense compounds having a gapmer motif are considered chimeric antisense compounds. In a gapmer an internal region having a plurality of nucleotides that supports RNaseH cleavage is positioned between external regions having a plurality of nucleotides that are chemically distinct from the nucleosides of the internal region. In the case of an oligonucleotide having a gapmer motif, the gap segment generally serves as the substrate for endonuclease cleavage, while the wing segments comprise modified nucleosides. In certain instances, the regions of a gapmer are differentiated by the types of sugar moieties comprising each distinct region. The types of sugar moieties that are used to differentiate the regions of a gapmer may in some instances include β-D-ribonucleosides, β-D-deoxyribonucleosides, 2'-modified nucleosides (such 2'-modified nucleosides may include 2'-MOE, and 2'-O-CH3, among others), and bicyclic sugar modified nucleosides (such bicyclic sugar modified nucleosides may include those having a 4'-(CH2)n-O-2' bridge, where n=1 or n=2 and 4'-CH2-O-CH2-2'). In certain instances, wings may include several modified sugar moieties, including, for example 2'-MOE. In certain instances, wings may include several modified and unmodified sugar moieties. In certain instances, wings may include various combinations of 2'-MOE nucleosides and 2'-deoxynucleosides.
Each distinct region may comprise uniform sugar moieties, variant, or alternating sugar moieties. The wing-gap-wing motif is frequently described as "X-Y-Z", where "X" represents the length of the 5' wing, "Y" represents the length of the gap, and "Z" represents the length of the 3' wing. "X" and "Z" may comprise uniform, variant, or alternating sugar moieties. In certain instances, "X" and "Y" may include one or more 2'-deoxynucleosides. "Y" may comprise 2'-deoxynucleosides. As used herein, a gapmer described as "X-Y-Z" has a configuration such that the gap is positioned immediately adjacent to each of the 5' wing and the 3' wing. Thus, no intervening nucleotides exist between the 5' wing and gap, or the gap and the 3' wing. Any of the antisense compounds described herein can have a gapmer motif. In certain instances, "X" and "Z" are the same; in other instances they are different.
In certain instances, gapmers described herein include, for example 20-mers having a motif of 5-10-5.
In certain instances, gapmers described herein include, for example 19-mers having a motif of 5-9-5.
In certain instances, gapmers described herein include, for example 18-mers having a motif of 5-8-5.
In certain instances, gapmers described herein include, for example 18-mers having a motif of 4-8-5.
In certain instances, gapmers described herein include, for example 18-mers having a motif of 5-8-7.
In certain instances, gapmers described herein include, for example 18-mers having a motif of 6-8-6.
In certain instances, gapmers described herein include, for example 18-mers having a motif of 6-8-5.
In certain instances, the modified oligonucleotide contains at least one 2'-O-methoxyethyl modified nucleoside , at least one cEt modified nucleoside , and at least one 2'-deoxynucleoside. In certain instances, the modified oligonucleotide has a sugar chemistry motif of any of the following:
  • ekddddddddekekee
  • kekeddddddddekek
  • eeeedddddddddkkee
  • eeeeddddddddekeke
  • eeeeddddddddkekee
  • eeeeddddddddkkeee
  • eeeeeddddddddkkee
  • eeeekddddddddkeee
  • eeeekdddddddkeeee
  • eeekddddddddkeeee
  • eeekkdddddddkkeee
  • eekkdddddddddkkee
  • eekkddddddddeeeee
  • eekkddddddddkkeee
  • ekekddddddddeeeee
  • ekekddddddddkekee
  • kekeddddddddeeeee, wherein e =a 2'-O-methoxyethylribose modified sugar,k =a cEt modified sugar,d =a 2'-deoxyribose sugar,
Target Nucleic Acids, Target Regions and Nucleotide Sequences
Nucleotide sequences that encode SOD-1 include, without limitation, the following: GENBANK Accession No. NM_000454.4 (incorporated herein as SEQ ID NO: 1), GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000 (incorporated herein as SEQ ID NO: 2), and the complement of GENBANK Accession No. NW_001114168.1 truncated from nucleotides 2258000 to 2271000 (incorporated herein as SEQ ID NO: 3).
It is understood that the sequence set forth in each SEQ ID NO in the Examples contained herein is independent of any modification to a sugar moiety, an internucleoside linkage, or a nucleobase. As such, antisense compounds defined by a SEQ ID NO may comprise, independently, one or more modifications to a sugar moiety, an internucleoside linkage, or a nucleobase. Antisense compounds described by Isis Number (Isis No) indicate a combination of nucleobase sequence and motif.
In certain instances, a target region is a structurally defined region of the target nucleic acid. For example, a target region may encompass a 3' UTR, a 5' UTR, an exon, an intron, an exon/intron junction, a coding region, a translation initiation region, translation termination region, or other defined nucleic acid region. The structurally defined regions for SOD-1 can be obtained by accession number from sequence databases such as NCBI. In certain instances, a target region may encompass the sequence from a 5' target site of one target segment within the target region to a 3' target site of another target segment within the same target region.
Targeting includes determination of at least one target segment to which an antisense compound hybridizes, such that a desired effect occurs. In certain instances, the desired effect is a reduction in mRNA target nucleic acid levels. In certain instances, the desired effect is reduction of levels of protein encoded by the target nucleic acid or a phenotypic change associated with the target nucleic acid.
A target region may contain one or more target segments. Multiple target segments within a target region may be overlapping. Alternatively, they may be non-overlapping. In certain instances, target segments within a target region are separated by no more than about 300 nucleotides. In certain instances, target segments within a target region are separated by a number of nucleotides that is, is about, is no more than, is no more than about, 250, 200, 150, 100, 90, 80, 70, 60, 50, 40, 30, 20, or 10 nucleotides on the target nucleic acid, or is a range defined by any two of the preceeding values. In certain instances, target segments within a target region are separated by no more than, or no more than about, 5 nucleotides on the target nucleic acid. In certain instances, target segments are contiguous. Contemplated are target regions defined by a range having a starting nucleic acid that is any of the 5' target sites or 3' target sites listed herein.
Suitable target segments may be found within a 5' UTR, a coding region, a 3' UTR, an intron, an exon, or an exon/intron junction. Target segments containing a start codon or a stop codon are also suitable target segments. A suitable target segment may specifcally exclude a certain structurally defined region such as the start codon or stop codon.
The determination of suitable target segments may include a comparison of the sequence of a target nucleic acid to other sequences throughout the genome. For example, the BLAST algorithm may be used to identify regions of similarity amongst different nucleic acids. This comparison can prevent the selection of antisense compound sequences that may hybridize in a non-specific manner to sequences other than a selected target nucleic acid (i.e., non-target or off-target sequences).
There may be variation in activity (e.g., as defined by percent reduction of target nucleic acid levels) of the antisense compounds within an active target region. In certain instances, reductions in SOD-1 mRNA levels are indicative of inhibition of SOD-1 expression. Reductions in levels of a SOD-1 protein are also indicative of inhibition of target mRNA expression. Phenotypic changes are indicative of inhibition of SOD-1 expression. Improvement in neurological function is indicative of inhibition of SOD-1 expression. Improved motor function is indicative of inhibition of SOD-1 expression.
Hybridization
In some instances, hybridization occurs between an antisense compound disclosed herein and a SOD-1 nucleic acid. The most common mechanism of hybridization involves hydrogen bonding (e.g., Watson-Crick, Hoogsteen or reversed Hoogsteen hydrogen bonding) between complementary nucleobases of the nucleic acid molecules.
Hybridization can occur under varying conditions. Stringent conditions are sequence-dependent and are determined by the nature and composition of the nucleic acid molecules to be hybridized.
Methods of determining whether a sequence is specifically hybridizable to a target nucleic acid are well known in the art. In certain instances, the antisense compounds described herein are specifically hybridizable with a SOD-1 nucleic acid.
Complementarity
An antisense compound and a target nucleic acid are complementary to each other when a sufficient number of nucleobases of the antisense compound can hydrogen bond with the corresponding nucleobases of the target nucleic acid, such that a desired effect will occur (e.g., antisense inhibition of a target nucleic acid, such as a SOD-1 nucleic acid).
Non-complementary nucleobases between an antisense compound and a SOD-1 nucleic acid may be tolerated provided that the antisense compound remains able to specifically hybridize to a target nucleic acid. Moreover, an antisense compound may hybridize over one or more segments of a SOD-1 nucleic acid such that intervening or adjacent segments are not involved in the hybridization event (e.g., a loop structure, mismatch or hairpin structure).
In certain instances, the antisense compounds described herein, or a specified portion thereof, are, or are at least, 70%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% complementary to a SOD-1 nucleic acid, a target region, target segment, or specified portion thereof. Percent complementarity of an antisense compound with a target nucleic acid can be determined using routine methods.
For example, an antisense compound in which 18 of 20 nucleobases of the antisense compound are complementary to a target region, and would therefore specifically hybridize, would represent 90 percent complementarity. In this example, the remaining noncomplementary nucleobases may be clustered or interspersed with complementary nucleobases and need not be contiguous to each other or to complementary nucleobases. As such, an antisense compound which is 18 nucleobases in length having 4 (four) noncomplementary nucleobases which are flanked by two regions of complete complementarity with the target nucleic acid would have 77.8% overall complementarity with the target nucleic acid and would thus fall within the scope of the present invention. Percent complementarity of an antisense compound with a region of a target nucleic acid can be determined routinely using BLAST programs (basic local alignment search tools) and PowerBLAST programs known in the art (Altschul et al., J. Mol. Biol., 1990, 215, 403 410; Zhang and Madden, Genome Res., 1997, 7, 649 656). Percent homology, sequence identity or complementarity, can be determined by, for example, the Gap program (Wisconsin Sequence Analysis Package, Version 8 for Unix, Genetics Computer Group, University Research Park, Madison Wis.), using default settings, which uses the algorithm of Smith and Waterman (Adv. Appl. Math., 1981, 2, 482 489).
In certain instances, the antisense compounds described herein, or specified portions thereof, are fully complementary (i.e., 100% complementary) to a target nucleic acid, or specified portion thereof. For example, an antisense compound may be fully complementary to a SOD-1 nucleic acid, or a target region, or a target segment or target sequence thereof. As used herein, "fully complementary" means each nucleobase of an antisense compound is capable of precise base pairing with the corresponding nucleobases of a target nucleic acid. For example, a 20 nucleobase antisense compound is fully complementary to a target sequence that is 400 nucleobases long, so long as there is a corresponding 20 nucleobase portion of the target nucleic acid that is fully complementary to the antisense compound. Fully complementary can also be used in reference to a specified portion of the first and /or the second nucleic acid. For example, a 20 nucleobase portion of a 30 nucleobase antisense compound can be "fully complementary" to a target sequence that is 400 nucleobases long. The 20 nucleobase portion of the 30 nucleobase oligonucleotide is fully complementary to the target sequence if the target sequence has a corresponding 20 nucleobase portion wherein each nucleobase is complementary to the 20 nucleobase portion of the antisense compound. At the same time, the entire 30 nucleobase antisense compound may or may not be fully complementary to the target sequence, depending on whether the remaining 10 nucleobases of the antisense compound are also complementary to the target sequence.
The location of a non-complementary nucleobase may be at the 5' end or 3' end of the antisense compound. Alternatively, the non-complementary nucleobase or nucleobases may be at an internal position of the antisense compound. When two or more non-complementary nucleobases are present, they may be contiguous (i.e., linked) or non-contiguous. In one instance, a non-complementary nucleobase is located in the wing segment of a gapmer oligonucleotide.
In certain instances, antisense compounds that are, or are up to 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 nucleobases in length comprise no more than 4, no more than 3, no more than 2, or no more than 1 non-complementary nucleobase(s) relative to a target nucleic acid, such as a SOD-1 nucleic acid, or specified portion thereof.
In certain instances, antisense compounds that are, or are up to 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 nucleobases in length comprise no more than 6, no more than 5, no more than 4, no more than 3, no more than 2, or no more than 1 non-complementary nucleobase(s) relative to a target nucleic acid, such as a SOD-1 nucleic acid, or specified portion thereof.
The antisense compounds described herein also include those which are complementary to a portion of a target nucleic acid. As used herein, "portion" refers to a defined number of contiguous (i.e. linked) nucleobases within a region or segment of a target nucleic acid. A "portion" can also refer to a defined number of contiguous nucleobases of an antisense compound. In certain instances, the antisense compounds, are complementary to at least an 8 nucleobase portion of a target segment. In certain instances, the antisense compounds are complementary to at least a 9 nucleobase portion of a target segment. In certain instances, the antisense compounds are complementary to at least a 10 nucleobase portion of a target segment. In certain instances, the antisense compounds, are complementary to at least an 11 nucleobase portion of a target segment. In certain instances, the antisense compounds, are complementary to at least a 12 nucleobase portion of a target segment. In certain instances, the antisense compounds, are complementary to at least a 13 nucleobase portion of a target segment. In certain instances, the antisense compounds, are complementary to at least a 14 nucleobase portion of a target segment. In certain instances, the antisense compounds, are complementary to at least a 15 nucleobase portion of a target segment. Also contemplated are antisense compounds that are complementary to at least a 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, or more nucleobase portion of a target segment, or a range defined by any two of these values.
Identity
The antisense compounds described herein may also have a defined percent identity to a particular nucleotide sequence, SEQ ID NO, or compound represented by a specific Isis number, or portion thereof. As used herein, an antisense compound is identical to the sequence disclosed herein if it has the same nucleobase pairing ability. For example, a RNA which contains uracil in place of thymidine in a disclosed DNA sequence would be considered identical to the DNA sequence since both uracil and thymidine pair with adenine. Shortened and lengthened versions of the antisense compounds described herein as well as compounds having non-identical bases relative to the antisense compounds described herein also are contemplated. The non-identical bases may be adjacent to each other or dispersed throughout the antisense compound. Percent identity of an antisense compound is calculated according to the number of bases that have identical base pairing relative to the sequence to which it is being compared.
In certain instances, the antisense compounds, or portions thereof, are at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99% or 100% identical to one or more of the antisense compounds or SEQ ID NOs, or a portion thereof, disclosed herein.
In certain instances, a portion of the antisense compound is compared to an equal length portion of the target nucleic acid. In certain instances, an 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleobase portion is compared to an equal length portion of the target nucleic acid.
In certain instances, a portion of the oligonucleotide is compared to an equal length portion of the target nucleic acid. In certain instances, an 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleobase portion is compared to an equal length portion of the target nucleic acid.
Modifications
A nucleoside is a base-sugar combination. The nucleobase (also known as base) portion of the nucleoside is normally a heterocyclic base moiety. Nucleotides are nucleosides that further include a phosphate group covalently linked to the sugar portion of the nucleoside. For those nucleosides that include a pentofuranosyl sugar, the phosphate group can be linked to the 2', 3' or 5' hydroxyl moiety of the sugar. Oligonucleotides are formed through the covalent linkage of adjacent nucleosides to one another, to form a linear polymeric oligonucleotide. Within the oligonucleotide structure, the phosphate groups are commonly referred to as forming the internucleoside linkages of the oligonucleotide.
Modifications to antisense compounds encompass substitutions or changes to internucleoside linkages, sugar moieties, or nucleobases. Modified antisense compounds are often preferred over native forms because of desirable properties such as, for example, enhanced cellular uptake, enhanced affinity for nucleic acid target, increased stability in the presence of nucleases, or increased inhibitory activity.
Chemically modified nucleosides may also be employed to increase the binding affinity of a shortened or truncated oligonucleotide for its target nucleic acid. Consequently, comparable results can often be obtained with shorter antisense compounds that have such chemically modified nucleosides.
Modified Internucleoside Linkages
The naturally occuring internucleoside linkage of RNA and DNA is a 3' to 5' phosphodiester linkage. Antisense compounds having one or more modified, i.e. non-naturally occurring, internucleoside linkages are often selected over antisense compounds having naturally occurring internucleoside linkages because of desirable properties such as, for example, enhanced cellular uptake, enhanced affinity for target nucleic acids, and increased stability in the presence of nucleases.
Oligonucleotides having modified internucleoside linkages include internucleoside linkages that retain a phosphorus atom as well as internucleoside linkages that do not have a phosphorus atom. Representative phosphorus containing internucleoside linkages include, but are not limited to, phosphodiesters, phosphotriesters, methylphosphonates, phosphoramidate, and phosphorothioates. Methods of preparation of phosphorous-containing and non-phosphorous-containing linkages are well known.
In certain instances, modified oligonucleotides targeted to a SOD-1 nucleic acid comprise one or more modified internucleoside linkages. In certain instances, the modified internucleoside linkages are interspersed throughout the antisense compound. In certain instances, the modified internucleoside linkages are phosphorothioate linkages. In certain instances, each internucleoside linkage of a modified oligonucleotide is a phosphorothioate internucleoside linkage.
In certain instances, the modified oligonucleotides targeted to a SOD-1 nucleic acid comprise one or more phosphodiester internucleoside linkages. In certain instances, modified oligonucleotides targeted to a SOD-1 nucleic acid comprise at least one phosphorothioate internucleoside linkage and at least one phosphodiester internucleoside linkage. In certain instances, the modified oligonucleotide has a mixed backbone motif of the following:
  • sossssssssoooss,
  • sooossssssssoss,
  • sooosssssssssoss,
  • soosssssssssooss,
  • sooossssssssooss,
  • sooosssssssssooss,
  • sooossssssssssooss,
  • sooosssssssssssooos,
  • soooossssssssssooss,
  • sooosssssssssssooss,
  • sososssssssssssosos, and
  • sooossssssssssoooss, wherein s =a phosphorothioate internucleoside linkage, ando =a phosphodiester internucleoside linkage.
Modified Sugar Moieties
Antisense compounds of the invention can optionally contain one or more nucleosides wherein the sugar group has been modified. Such sugar modified nucleosides may impart enhanced nuclease stability, increased binding affinity, or some other beneficial biological property to the antisense compounds. In certain instances, nucleosides comprise chemically modified ribofuranose ring moieties. Examples of chemically modified ribofuranose rings include without limitation, addition of substitutent groups (including 5' and 2' substituent groups, bridging of non-geminal ring atoms to form bicyclic nucleic acids (BNA), replacement of the ribosyl ring oxygen atom with S, N(R), or C(R1)(R2) (R, R1 and R2 are each independently H, C1-C12 alkyl or a protecting group) and combinations thereof. Examples of chemically modified sugars include 2'-F-5'-methyl substituted nucleoside (see PCT International Application WO 2008/101157 Published on 8/21/08 for other disclosed 5',2'-bis substituted nucleosides) or replacement of the ribosyl ring oxygen atom with S with further substitution at the 2'-position (see published U.S. Patent Application US2005-0130923, published on June 16, 2005 ) or alternatively 5'-substitution of a BNA (see PCT International Application WO 2007/134181 Published on 11/22/07 wherein LNA is substituted with for example a 5'-methyl or a 5'-vinyl group).
Examples of nucleosides having modified sugar moieties include without limitation nucleosides comprising 5'-vinyl, 5'-methyl (R or S), 4'-S, 2'-F, 2'-OCH3, 2'-OCH2CH3, 2'-OCH2CH2F and 2'-O(CH2)2OCH3 substituent groups. The substituent at the 2' position can also be selected from allyl, amino, azido, thio, O-allyl, O-C1-C10 alkyl, OCF3, OCH2F, O(CH2)2SCH3, O(CH2)2-O-N(Rm)(Rn), O-CH2-C(=O)-N(Rm)(Rn), and O-CH2-C(=O)-N(R1)-(CH2)2-N(Rm)(Rn), where each R1, Rm and Rn is, independently, H or substituted or unsubstituted C1-C20 alkyl.
As used herein, "bicyclic nucleosides" refer to modified nucleosides comprising a bicyclic sugar moiety. Examples of bicyclic nucleic acids (BNAs) include without limitation nucleosides comprising a bridge between the 4' and the 2' ribosyl ring atoms. In certain instances, antisense compounds described herein include one or more BNA nucleosides wherein the bridge comprises one of the formulas: 4'-(CH2)-O-2' (LNA); 4'-(CH2)-S-2'; 4'-(CH2)2-O-2' (ENA); 4'-CH(CH3)-O-2' and 4'-CH(CH2OCH3)-O-2' (and analogs thereof see U.S. Patent 7,399,845, issued on July 15, 2008 ); 4'-C(CH3)(CH3)-O-2' (and analogs thereof see PCT/US2008/068922 published as WO/2009/006478, published January 8, 2009 ); 4'-CH2-N(OCH3)-2' (and analogs thereof see PCT/US2008/064591 published as WO/2008/150729, published December 11, 2008 ); 4-CH2-ON(CH3)-2' (see published U.S. Patent Application US2004-0171570, published September 2, 2004 ); 4'-CH2-N(R)-O-2', wherein R is H, C1-C12 alkyl, or a protecting group (see U.S. Patent 7,427,672, issued on September 23, 2008 ); 4'-CH2-C(H)(CH3)-2' (see Chattopadhyaya et al., J. Org. Chem., 2009, 74, 118-134); and 4'-CH2-C(=CH2)-2' (and analogs thereof see PCT/US2008/066154 published as WO 2008/154401, published on December 8, 2008 ).
Further bicyclic nucleosides have been reported in published literature (see for example: Srivastava et al., J. Am. Chem. Soc., 2007, 129(26) 8362-8379; Frieden et al., Nucleic Acids Research, 2003, 21, 6365-6372; Elayadi et al., Curr. Opinion Invens. Drugs, 2001, 2, 558-561; Braasch et al., Chem. Biol., 2001, 8, 1-7; Orum et al., Curr. Opinion Mol. Ther., 2001, 3, 239-243; Wahlestedt et al., Proc. Natl. Acad. Sci. U. S. A., 2000, 97, 5633-5638; Singh et al., Chem. Commun., 1998, 4, 455-456; Koshkin et al., Tetrahedron, 1998, 54, 3607-3630; Kumar et al., Bioorg. Med. Chem. Lett., 1998, 8, 2219-2222; Singh et al., J. Org. Chem., 1998, 63, 10035-10039; U.S. Patents Nos.: 7,399,845 ; 7,053,207 ; 7,034,133 ; 6,794,499 ; 6,770,748 ; 6,670,461 ; 6,525,191 ; 6,268,490 ; U.S. Patent Publication Nos.: US2008-0039618 ; US2007-0287831 ; US2004-0171570 ; U.S. Patent Applications, Serial Nos.: 12/129,154 ; 61/099,844 ; 61/097,787 ; 61/086,231 ; 61/056,564 ; 61/026,998 ; 61/026,995 ; 60/989,574 ; International applications WO 2007/134181 ; WO 2005/021570 ; WO 2004/106356 ; WO 94/14226 ; and PCT International Applications Nos.: PCT/US2008/068922 ; PCT/US2008/066154 ; and PCT/US2008/064591 ). Each of the foregoing bicyclic nucleosides can be prepared having one or more stereochemical sugar configurations including for example α-L-ribofuranose and β-D-ribofuranose (see PCT international application PCT/DK98/00393, published on March 25, 1999 as WO 99/14226 ).
As used herein, "monocylic nucleosides" refer to nucleosides comprising modified sugar moieties that are not bicyclic sugar moieties. In certain instances, the sugar moiety, or sugar moiety analogue, of a nucleoside may be modified or substituted at any position.
As used herein, "4'-2' bicyclic nucleoside" or "4' to 2' bicyclic nucleoside" refers to a bicyclic nucleoside comprising a furanose ring comprising a bridge connecting two carbon atoms of the furanose ring connects the 2' carbon atom and the 4' carbon atom of the sugar ring.
In certain instances, bicyclic sugar moieties of BNA nucleosides include, but are not limited to, compounds having at least one bridge between the 4' and the 2' carbon atoms of the pentofuranosyl sugar moiety including without limitation, bridges comprising 1 or from 1 to 4 linked groups independently selected from -[C(Ra)(Rb)]n-, -C(Ra)=C(Rb)-, -C(Ra)=N-, -C(=NRa)-, - C(=O)-, -C(=S)-, -O-, -Si(Ra)2-, -S(=O)x-, and -N(Ra)-; wherein: x is 0, 1, or 2; n is 1, 2, 3, or 4; each Ra and Rb is, independently, H, a protecting group, hydroxyl, C1-C12 alkyl, substituted C1-C12 alkyl, C2-C12 alkenyl, substituted C2-C12 alkenyl, C2-C12 alkynyl, substituted C2-C12 alkynyl, C5-C20 aryl, substituted C5-C20 aryl, heterocycle radical, substituted heterocycle radical, heteroaryl, substituted heteroaryl, C5-C7 alicyclic radical, substituted C5-C7 alicyclic radical, halogen, OJ1, NJ1J2, SJ1, N3, COOJ1, acyl (C(=O)-H), substituted acyl, CN, sulfonyl (S(=O)2-J1), or sulfoxyl (S(=O)-J1); and each J1 and J2 is, independently, H, C1-C12 alkyl, substituted C1-C12 alkyl, C2-C12 alkenyl, substituted C2-C12 alkenyl, C2-C12 alkynyl, substituted C2-C12 alkynyl, C5-C20 aryl, substituted C5-C20 aryl, acyl (C(=O)-H), substituted acyl, a heterocycle radical, a substituted heterocycle radical, C1-C12 aminoalkyl, substituted C1-C12 aminoalkyl or a protecting group.
In certain instances, the bridge of a bicyclic sugar moiety is, -[C(Ra)(Rb)]n-, -[C(Ra)(Rb)]n-O-, -C(RaRb)-N(R)-O- or -C(RaRb)-O-N(R)-. In certain instances, the bridge is 4'-CH2-2', 4'-(CH2)2-2', 4'-(CH2)3-2', 4'-CH2-O-2', 4'-(CH2)2-O-2', 4'-CH2-O-N(R)-2' and 4'-CH2-N(R)-O-2'- wherein each R is, independently, H, a protecting group or C1-C12 alkyl.
In certain instances, bicyclic nucleosides are further defined by isomeric configuration. For example, a nucleoside comprising a 4'-(CH2)-O-2' bridge, may be in the α-L configuration or in the β-D configuration. Previously, α-L-methyleneoxy (4'-CH2-O-2') BNA's have been incorporated into antisense oligonucleotides that showed antisense activity (Frieden et al., Nucleic Acids Research, 2003, 21, 6365-6372).
In certain instances, bicyclic nucleosides include those having a 4' to 2' bridge wherein such bridges include without limitation, α-L-4'-(CH2)-O-2', β-D-4'-CH2-O-2', 4'-(CH2)2-O-2', 4'-CH2-ON(R)-2', 4'-CH2-N(R)-O-2', 4'-CH(CH3)-O-2', 4'-CH2-S-2', 4'-CH2-N(R)-2', 4'-CH2-CH(CH3)-2', and 4'-(CH2)3-2', wherein R is H, a protecting group or C1-C12 alkyl.
In certaininstance, bicyclic nucleosides have the formula: wherein:
  • Bx is a heterocyclic base moiety;
  • -Qa-Qb-Qc- is -CH2-N(Rc)-CH2-, -C(=O)-N(Rc)-CH2-, -CH2-O-N(Rc)-, -CH2-N(Rc)-O- or - N(Rc)-O-CH2;
  • Rc is C1-C12 alkyl or an amino protecting group; and
  • Ta and Tb are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium.
In certain instances, bicyclic nucleosides have the formula: wherein:
  • Bx is a heterocyclic base moiety;
  • Ta and Tb are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
  • Za is C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, substituted C1-C6 alkyl, substituted C2-C6 alkenyl, substituted C2-C6 alkynyl, acyl, substituted acyl, substituted amide, thiol or substituted thiol.
In one instance, each of the substituted groups, is, independently, mono or poly substituted with substituent groups independently selected from halogen, oxo, hydroxyl, OJc, NJcJd, SJc, N3, OC(=X)Jc, and NJeC(=X)NJcJd, wherein each Jc, Jd and Je is, independently, H, C1-C6 alkyl, or substituted C1-C6 alkyl and X is O or NJc.
In certain instances, bicyclic nucleosides have the formula: wherein:
  • Bx is a heterocyclic base moiety;
  • Ta and Tb are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
  • Zb is C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, substituted C1-C6 alkyl, substituted C2-C6 alkenyl, substituted C2-C6 alkynyl or substituted acyl (C(=O)-).
In certain instances, bicyclic nucleosides have the formula: wherein:
  • Bx is a heterocyclic base moiety;
  • Ta and Tb are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
  • Rd is C1-C6 alkyl, substituted C1-C6 alkyl, C2-C6 alkenyl, substituted C2-C6 alkenyl, C2-C6 alkynyl or substituted C2-C6 alkynyl;
  • each qa, qb, qc and qd is, independently, H, halogen, C1-C6 alkyl, substituted C1-C6 alkyl, C2-C6 alkenyl, substituted C2-C6 alkenyl, C2-C6 alkynyl or substituted C2-C6 alkynyl, C1-C6 alkoxyl, substituted C1-C6 alkoxyl, acyl, substituted acyl, C1-C6 aminoalkyl or substituted C1-C6 aminoalkyl;
In certain instances, bicyclic nucleosides have the formula: wherein:
  • Bx is a heterocyclic base moiety;
  • Ta and Tb are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
  • qa, qb, qe and qf are each, independently, hydrogen, halogen, C1-C12 alkyl, substituted C1-C12 alkyl, C2-C12 alkenyl, substituted C2-C12 alkenyl, C2-C12 alkynyl, substituted C2-C12 alkynyl, C1-C12 alkoxy, substituted C1-C12 alkoxy, OJj, SJj, SOJj, SO2Jj, NJjJk, N3, CN, C(=O)OJj, C(=O)NJjJk, C(=O)Jj, O-C(=O)NJjJk, N(H)C(=NH)NJjJk, N(H)C(=O)NJjJk or N(H)C(=S)NJjJk;
  • or qe and qf together are =C(qg)(qh);
  • qg and qh are each, independently, H, halogen, C1-C12 alkyl or substituted C1-C12 alkyl.
The synthesis and preparation of adenine, cytosine, guanine, 5-methyl-cytosine, thymine and uracil bicyclic nucleosides having a 4'-CH2-O-2' bridge, along with their oligomerization, and nucleic acid recognition properties have been described (Koshkin et al., Tetrahedron, 1998, 54, 3607-3630). The synthesis of bicyclic nucleosides has also been described in WO 98/39352 and WO 99/14226 .
Analogs of various bicyclic nucleosides that have 4' to 2' bridging groups such as 4'-CH2-O-2' and 4'-CH2-S-2', have also been prepared (Kumar et al., Bioorg. Med. Chem. Lett., 1998, 8, 2219-2222). Preparation of oligodeoxyribonucleotide duplexes comprising bicyclic nucleosides for use as substrates for nucleic acid polymerases has also been described ( Wengel et al., WO 99/14226 ). Furthermore, synthesis of 2'-amino-BNA, a novel conformationally restricted high-affinity oligonucleotide analog has been described in the art (Singh et al., J. Org. Chem., 1998, 63, 10035-10039). In addition, 2'-amino- and 2'-methylamino-BNA's have been prepared and the thermal stability of their duplexes with complementary RNA and DNA strands has been previously reported.
In certain instances, bicyclic nucleosides have the formula: wherein:
  • Bx is a heterocyclic base moiety;
  • Ta and Tb are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
  • each qi, qj, qk and q1 is, independently, H, halogen, C1-C12 alkyl, substituted C1-C12 alkyl, C2-C12 alkenyl, substituted C2-C12 alkenyl, C2-C12 alkynyl, substituted C2-C12 alkynyl, C1-C12 alkoxyl, substituted C1-C12 alkoxyl, OJj, SJj, SOJj, SO2Jj, NJjJk, N3, CN, C(=O)OJj, C(=O)NJjJk, C(=O)Jj, O-C(=O)NJjJk, N(H)C(=NH)NJjJk, N(H)C(=O)NJjJk or N(H)C(=S)NJjJk; and
  • qi and qj or qi and qk together are =C(qg)(qh), wherein qg and qh are each, independently, H, halogen, C1-C12 alkyl or substituted C1-C12 alkyl.
One carbocyclic bicyclic nucleoside having a 4'-(CH2)3-2' bridge and the alkenyl analog bridge 4'-CH=CH-CH2-2' have been described (Frier et al., Nucleic Acids Research, 1997, 25(22), 4429-4443 and Albaek et al., J. Org. Chem., 2006, 71, 7731-7740). The synthesis and preparation of carbocyclic bicyclic nucleosides along with their oligomerization and biochemical studies have also been described (Srivastava et al., J. Am. Chem. Soc. 2007,129(26), 8362-8379).
In certain instances, bicyclic nucleosides include, but are not limited to, (A) α-L-methyleneoxy (4'-CH2-O-2') BNA, (B) β-D-methyleneoxy (4'-CH2-O-2') BNA, (C) ethyleneoxy (4'-(CH2)2-O-2') BNA, (D) aminooxy (4'-CH2-O-N(R)-2') BNA, (E) oxyamino (4'-CH2-N(R)-O-2') BNA, (F) methyl(methyleneoxy) (4'-CH(CH3)-O-2') BNA (also referred to as constrained ethyl or cEt), (G) methylene-thio (4'-CH2-S-2') BNA, (H) methylene-amino (4'-CH2-N(R)-2') BNA, (I) methyl carbocyclic (4'-CH2-CH(CH3)-2') BNA, (J) propylene carbocyclic (4'-(CH2)3-2') BNA, and (K) vinyl BNA as depicted below. wherein Bx is the base moiety and R is, independently, H, a protecting group, C1-C6 alkyl or C1-C6 alkoxy.
As used herein, the term "modified tetrahydropyran nucleoside" or "modified THP nucleoside" means a nucleoside having a six-membered tetrahydropyran "sugar" substituted for the pentofuranosyl residue in normal nucleosides and can be referred to as a sugar surrogate. Modified THP nucleosides include, but are not limited to, what is referred to in the art as hexitol nucleic acid (HNA), anitol nucleic acid (ANA), manitol nucleic acid (MNA) (see Leumann, Bioorg. Med. Chem., 2002, 10, 841-854) or fluoro HNA (F-HNA) having a tetrahydropyranyl ring system as illustrated below.
In certain instance, sugar surrogates are selected having the formula: wherein:
  • Bx is a heterocyclic base moiety;
  • T3 and T4 are each, independently, an internucleoside linking group linking the tetrahydropyran nucleoside analog to the oligomeric compound or one of T3 and T4 is an internucleoside linking group linking the tetrahydropyran nucleoside analog to an oligomeric compound or oligonucleotide and the other of T3 and T4 is H, a hydroxyl protecting group, a linked conjugate group or a 5' or 3'-terminal group;
  • q1, q2, q3, q4, q5, q6 and q7 are each independently, H, C1-C6 alkyl, substituted C1-C6 alkyl, C2-C6 alkenyl, substituted C2-C6 alkenyl, C2-C6 alkynyl or substituted C2-C6 alkynyl; and
  • one of R1 and R2 is hydrogen and the other is selected from halogen, substituted or unsubstituted alkoxy, NJ1J2, SJ1, N3, OC(=X)J1, OC(=X)NJ1J2, NJ3C(=X)NJ1J2 and CN, wherein X is O, S or NJ1 and each J1, J2 and J3 is, independently, H or C1-C6 alkyl.
In certain instances, q1, q2, q3, q4, q5, q6 and q7 are each H. In certain instances, at least one of q1, q2, q3, q4, q5, q6 and q7 is other than H. In certain instances, at least one of q1, q2, q3, q4, q5, q6 and q7 is methyl. In certain instances, THP nucleosides are provided wherein one of R1 and R2 is F. In certain instances, R1 is fluoro and R2 is H; R1 is methoxy and R2 is H, and R1 is methoxyethoxy and R2 is H.
In certain instances, sugar surrogates comprise rings having more than 5 atoms and more than one heteroatom. For example nucleosides comprising morpholino sugar moieties and their use in oligomeric compounds has been reported (see for example: Braasch et al., Biochemistry, 2002, 41, 4503-4510; and U.S. Patents 5,698,685 ; 5,166,315 ; 5,185,444 ; and 5,034,506 ). As used here, the term "morpholino" means a sugar surrogate having the following formula:
In certain instances, morpholinos may be modified, for example by adding or altering various substituent groups from the above morpholino structure. Such sugar surrogates are referred to herein as "modifed morpholinos."
Combinations of modifications are also provided without limitation, such as 2'-F-5'-methyl substituted nucleosides (see PCT International Application WO 2008/101157 published on 8/21/08 for other disclosed 5', 2'-bis substituted nucleosides) and replacement of the ribosyl ring oxygen atom with S and further substitution at the 2'-position (see published U.S. Patent Application US2005-0130923, published on June 16, 2005 ) or alternatively 5'-substitution of a bicyclic nucleic acid (see PCT International Application WO 2007/134181 , published on 11/22/07 wherein a 4'-CH2-O-2' bicyclic nucleoside is further substituted at the 5' position with a 5'-methyl or a 5'-vinyl group). The synthesis and preparation of carbocyclic bicyclic nucleosides along with their oligomerization and biochemical studies have also been described (see, e.g., Srivastava et al., J. Am. Chem. Soc. 2007,129(26), 8362-8379).
In certain instances, antisense compounds comprise one or more modified cyclohexenyl nucleosides, which is a nucleoside having a six-membered cyclohexenyl in place of the pentofuranosyl residue in naturally occurring nucleosides. Modified cyclohexenyl nucleosides include, but are not limited to those described in the art (see for example commonly owned, published PCT Application WO 2010/036696, published on April 10, 2010 , Robeyns et al., J. Am. Chem. Soc., 2008, 130(6), 1979-1984; Horváth et al., Tetrahedron Letters, 2007, 48, 3621-3623; Nauwelaerts et al., J. Am. Chem. Soc., 2007, 129(30), 9340-9348; Gu et al.,, Nucleosides, Nucleotides & Nucleic Acids, 2005, 24(5-7), 993-998; Nauwelaerts et al., Nucleic Acids Research, 2005, 33(8), 2452-2463; Robeyns et al., Acta Crystallographica, Section F: Structural Biology and Crystallization Communications, 2005, F61(6), 585-586; Gu et al., Tetrahedron, 2004, 60(9), 2111-2123; Gu et al., Oligonucleotides, 2003, 13(6), 479-489; Wang et al., J. Org. Chem., 2003, 68, 4499-4505; Verbeure et al., Nucleic Acids Research, 2001, 29(24), 4941-4947; Wang et al., J. Org. Chem., 2001, 66, 8478-82; Wang et al., Nucleosides, Nucleotides & Nucleic Acids, 2001, 20(4-7), 785-788; Wang et al., J. Am. Chem., 2000, 122, 8595-8602; Published PCT application, WO 06/047842 ; and Published PCT Application WO 01/049687 ). Certain modified cyclohexenyl nucleosides have Formula X. wherein independently for each of said at least one cyclohexenyl nucleoside analog of Formula X:
  • Bx is a heterocyclic base moiety;
  • T3 and T4 are each, independently, an internucleoside linking group linking the cyclohexenyl nucleoside analog to an antisense compound or one of T3 and T4 is an internucleoside linking group linking the tetrahydropyran nucleoside analog to an antisense compound and the other of T3 and T4 is H, a hydroxyl protecting group, a linked conjugate group, or a 5'-or 3'-terminal group; and
  • q1, q2, q3, q4, q5, q6, q7, q8 and q9 are each, independently, H, C1-C6 alkyl, substituted C1-C6 alkyl, C2-C6 alkenyl, substituted C2-C6 alkenyl, C2-C6 alkynyl, substituted C2-C6 alkynyl or other sugar substituent group.
Many other monocyclic, bicyclic and tricyclic ring systems are known in the art and are suitable as sugar surrogates that can be used to modify nucleosides for incorporation into oligomeric compounds as provided herein (see for example review article: Leumann, Christian J. Bioorg. & Med. Chem., 2002, 10, 841-854). Such ring systems can undergo various additional substitutions to further enhance their activity.
As used herein, "2'-modified sugar" means a furanosyl sugar modified at the 2' position. In certain instances, such modifications include substituents selected from: a halide, including, but not limited to substituted and unsubstituted alkoxy, substituted and unsubstituted thioalkyl, substituted and unsubstituted amino alkyl, substituted and unsubstituted alkyl, substituted and unsubstituted allyl, and substituted and unsubstituted alkynyl. In certain instances, 2' modifications are selected from substituents including, but not limited to: O[(CH2)nO]mCH3, O(CH2)nNH2, O(CH2)nCH3, O(CH2)nF, O(CH2)nONH2, OCH2C(=O)N(H)CH3, and O(CH2)nON[(CH2)nCH3]2, where n and m are from 1 to about 10. Other 2'- substituent groups can also be selected from: C1-C12 alkyl, substituted alkyl, alkenyl, alkynyl, alkaryl, aralkyl, O-alkaryl or O-aralkyl, SH, SCH3, OCN, Cl, Br, CN, F, CF3, OCF3, SOCH3, SO2CH3, ONO2, NO2, N3, NH2, heterocycloalkyl, heterocycloalkaryl, aminoalkylamino, polyalkylamino, substituted silyl, an RNA cleaving group, a reporter group, an intercalator, a group for improving pharmacokinetic properties, or a group for improving the pharmacodynamic properties of an antisense compound, and other substituents having similar properties. In certain instances, modifed nucleosides comprise a 2'-MOE side chain (Baker et al., J. Biol. Chem., 1997, 272, 11944-12000). Such 2'-MOE substitution have been described as having improved binding affinity compared to unmodified nucleosides and to other modified nucleosides, such as 2'- O-methyl, O-propyl, and O-aminopropyl. Oligonucleotides having the 2'-MOE substituent also have been shown to be antisense inhibitors of gene expression with promising features for in vivo use (Martin, Helv. Chim. Acta, 1995, 78, 486-504; Altmann et al., Chimia, 1996, 50, 168-176; Altmann et al., Biochem. Soc. Trans., 1996, 24, 630-637; and Altmann et al., Nucleosides Nucleotides, 1997, 16, 917-926).
As used herein, "2'-modified" or "2'-substituted" refers to a nucleoside comprising a sugar comprising a substituent at the 2' position other than H or OH. 2'-modified nucleosides, include, but are not limited to, bicyclic nucleosides wherein the bridge connecting two carbon atoms of the sugar ring connects the 2' carbon and another carbon of the sugar ring; and nucleosides with non-bridging 2'substituents, such as allyl, amino, azido, thio, O-allyl, O-C1-C10 alkyl, -OCF3, O-(CH2)2-O-CH3, 2'-O(CH2)2SCH3, O-(CH2)2-O-N(Rm)(Rn), or O-CH2-C(=O)-N(Rm)(Rn), where each Rm and Rn is, independently, H or substituted or unsubstituted C1-C10 alkyl. 2'-modifed nucleosides may further comprise other modifications, for example at other positions of the sugar and/or at the nucleobase.
As used herein, "2'-F" refers to a nucleoside comprising a sugar comprising a fluoro group at the 2' position of the sugar ring.
As used herein, "2'-OMe" or "2'-OCH3", "2'-O-methyl" or "2'-methoxy" each refers to a nucleoside comprising a sugar comprising an -OCH3 group at the 2' position of the sugar ring.
As used herein, "MOE" or "2'-MOE" or "2'-OCH2CH2OCH3" or "2'-O-methoxyethyl" each refers to a nucleoside comprising a sugar comprising a -OCH2CH2OCH3 group at the 2' position of the sugar ring.
Methods for the preparations of modified sugars are well known to those skilled in the art. Some representative U.S. patents that teach the preparation of such modified sugars include without limitation, U.S.: 4,981,957 ; 5,118,800 ; 5,319,080 ; 5,359,044 ; 5,393,878 ; 5,446,137 ; 5,466,786 ; 5,514,785 ; 5,519,134 ; 5,567,811 ; 5,576,427 ; 5,591,722 ; 5,597,909 ; 5,610,300 ; 5,627,053 ; 5,639,873 ; 5,646,265 ; 5,670,633 ; 5,700,920 ; 5,792,847 and 6,600,032 and International Application PCT/US2005/019219, filed June 2, 2005 and published as WO 2005/121371 on December 22, 2005 .
As used herein, "oligonucleotide" refers to a compound comprising a plurality of linked nucleosides. In certain instances, one or more of the plurality of nucleosides is modified. In certain instances, an oligonucleotide comprises one or more ribonucleosides (RNA) and/or deoxyribonucleosides (DNA).
In nucleotides having modified sugar moieties, the nucleobase moieties (natural, modified or a combination thereof) are maintained for hybridization with an appropriate nucleic acid target.
In certain instances, antisense compounds comprise one or more nucleosides having modified sugar moieties. In certain instances, the modified sugar moiety is 2'-MOE. In certain instances, the 2'-MOE modified nucleosides are arranged in a gapmer motif. In certain instances, the modified sugar moiety is a bicyclic nucleoside having a (4'-CH(CH3)-O-2') bridging group. In certain instances, the (4'-CH(CH3)-O-2') modified nucleosides are arranged throughout the wings of a gapmer motif.
Compositions and Methods for Formulating Pharmaceutical Compositions
Oligonucleotides may be admixed with pharmaceutically acceptable active or inert substances for the preparation of pharmaceutical compositions or formulations. Compositions and methods for the formulation of pharmaceutical compositions are dependent upon a number of criteria, including, but not limited to, route of administration, extent of disease, or dose to be administered.
An antisense compound targeted to a SOD-1 nucleic acid can be utilized in pharmaceutical compositions by combining the antisense compound with a suitable pharmaceutically acceptable diluent or carrier. A pharmaceutically acceptable diluent includes phosphate-buffered saline (PBS). PBS is a diluent suitable for use in compositions to be delivered parenterally. Accordingly, in one instance, employed in the methods described herein is a pharmaceutical composition comprising an antisense compound targeted to a SOD-1 nucleic acid and a pharmaceutically acceptable diluent. In certain instances, the pharmaceutically acceptable diluent is PBS. In certain instances, the antisense compound is a modified oligonucleotide.
Pharmaceutical compositions comprising antisense compounds encompass any pharmaceutically acceptable salts, esters, or salts of such esters, or any other oligonucleotide which, upon administration to an animal, including a human, is capable of providing (directly or indirectly) the biologically active metabolite or residue thereof. Accordingly, for example, the disclosure is also drawn to pharmaceutically acceptable salts of antisense compounds, prodrugs, pharmaceutically acceptable salts of such prodrugs, and other bioequivalents. Suitable pharmaceutically acceptable salts include, but are not limited to, sodium and potassium salts.
A prodrug can include the incorporation of additional nucleosides at one or both ends of an antisense compound which are cleaved by endogenous nucleases within the body, to form the active antisense compound.
Conjugated Antisense Compounds
Antisense compounds may be covalently linked to one or more moieties or conjugates which enhance the activity, cellular distribution or cellular uptake of the resulting oligonucleotides. Typical conjugate groups include cholesterol moieties and lipid moieties. Additional conjugate groups include carbohydrates, phospholipids, biotin, phenazine, folate, phenanthridine, anthraquinone, acridine, fluoresceins, rhodamines, coumarins, and dyes.
Antisense compounds can also be modified to have one or more stabilizing groups that are generally attached to one or both termini of antisense compounds to enhance properties such as, for example, nuclease stability. Included in stabilizing groups are cap structures. These terminal modifications protect the antisense compound having terminal nucleic acid from exonuclease degradation, and can help in delivery and/or localization within a cell. The cap can be present at the 5'-terminus (5'-cap), or at the 3'-terminus (3'-cap), or can be present on both termini. Cap structures are well known in the art and include, for example, inverted deoxy abasic caps. Further 3' and 5'-stabilizing groups that can be used to cap one or both ends of an antisense compound to impart nuclease stability include those disclosed in WO 03/004602 published on January 16, 2003 .
Cell culture and antisense compounds treatment
The effects of antisense compounds on the level, activity or expression of SOD-1 nucleic acids can be tested in vitro in a variety of cell types. Cell types used for such analyses are available from commerical vendors (e.g. American Type Culture Collection, Manassus, VA; Zen-Bio, Inc., Research Triangle Park, NC; Clonetics Corporation, Walkersville, MD) and are cultured according to the vendor's instructions using commercially available reagents (e.g. Invitrogen Life Technologies, Carlsbad, CA). Illustrative cell types include, but are not limited to, HepG2 cells, Hep3B cells, primary hepatocytes, A431 cells, and SH-SY5Y cells.
In vitro testing of oligonucleotides
Described herein are methods for treatment of cells with oligonucleotides, which can be modified appropriately for treatment with other antisense compounds.
Cells may be treated with oligonucleotides when the cells reach approximately 60-80% confluency in culture.
One reagent commonly used to introduce oligonucleotides into cultured cells includes the cationic lipid transfection reagent LIPOFECTIN (Invitrogen, Carlsbad, CA). Oligonucleotides may be mixed with LIPOFECTIN in OPTI-MEM 1 (Invitrogen, Carlsbad, CA) to achieve the desired final concentration of oligonucleotide and a LIPOFECTIN concentration that may range from 2 to 12 ug/mL per 100 nM oligonucleotide.
Another reagent used to introduce oligonucleotides into cultured cells includes LIPOFECTAMINE (Invitrogen, Carlsbad, CA). Oligonucleotide is mixed with LIPOFECTAMINE in OPTI-MEM 1 reduced serum medium (Invitrogen, Carlsbad, CA) to achieve the desired concentration of oligonucleotide and a LIPOFECTAMINE concentration that may range from 2 to 12 ug/mL per 100 nM oligonucleotide.
Another technique used to introduce oligonucleotides into cultured cells includes electroporation.
Cells are treated with oligonucleotides by routine methods. Cells may be harvested 16-24 hours after oligonucleotide treatment, at which time RNA or protein levels of target nucleic acids are measured by methods known in the art and described herein. In general, when treatments are performed in multiple replicates, the data are presented as the average of the replicate treatments.
The concentration of oligonucleotide used varies from cell line to cell line. Methods to determine the optimal oligonucleotide concentration for a particular cell line are well known in the art. Oligonucleotides are typically used at concentrations ranging from 1 nM to 300 nM when transfected with LIPOFECTAMINE. Oligonucleotides are used at higher concentrations ranging from 625 to 20,000 nM when transfected using electroporation.
RNA Isolation
RNA analysis can be performed on total cellular RNA or poly(A)+ mRNA. Methods of RNA isolation are well known in the art. RNA is prepared using methods well known in the art, for example, using the TRIZOL Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer's recommended protocols.
Analysis of inhibition of target levels or expression
Inhibition of levels or expression of a SOD-1 nucleic acid can be assayed in a variety of ways known in the art. For example, target nucleic acid levels can be quantitated by, e.g., Northern blot analysis, competitive polymerase chain reaction (PCR), or quantitaive real-time PCR. RNA analysis can be performed on total cellular RNA or poly(A)+ mRNA. Methods of RNA isolation are well known in the art. Northern blot analysis is also routine in the art. Quantitative real-time PCR can be conveniently accomplished using the commercially available ABI PRISM 7600, 7700, or 7900 Sequence Detection System, available from PE-Applied Biosystems, Foster City, CA and used according to manufacturer's instructions.
Quantitative Real-Time PCR Analysis of Target RNA Levels
Quantitation of target RNA levels may be accomplished by quantitative real-time PCR using the ABI PRISM 7600, 7700, or 7900 Sequence Detection System (PE-Applied Biosystems, Foster City, CA) according to manufacturer's instructions. Methods of quantitative real-time PCR are well known in the art.
Prior to real-time PCR, the isolated RNA is subjected to a reverse transcriptase (RT) reaction, which produces complementary DNA (cDNA) that is then used as the substrate for the real-time PCR amplification. The RT and real-time PCR reactions are performed sequentially in the same sample well. RT and real-time PCR reagents may be obtained from Invitrogen (Carlsbad, CA). RT real-time-PCR reactions are carried out by methods well known to those skilled in the art.
Gene (or RNA) target quantities obtained by real time PCR are normalized using either the expression level of a gene whose expression is constant, such as cyclophilin A, or by quantifying total RNA using RIBOGREEN (Invitrogen, Inc. Carlsbad, CA). Cyclophilin A expression is quantified by real time PCR, by being run simultaneously with the target, multiplexing, or separately. Total RNA is quantified using RIBOGREEN RNA quantification reagent (Invetrogen, Inc. Eugene, OR). Methods of RNA quantification by RIBOGREEN are SOD-1ght in Jones, L.J., et al, (Analytical Biochemistry, 1998, 265, 368-374). A CYTOFLUOR 4000 instrument (PE Applied Biosystems) is used to measure RIBOGREEN fluorescence.
Probes and primers are designed to hybridize to a SOD-1 nucleic acid. Methods for designing real-time PCR probes and primers are well known in the art, and may include the use of software such as PRIMER EXPRESS Software (Applied Biosystems, Foster City, CA).
Analysis of Protein Levels
Antisense inhibition of SOD-1 nucleic acids can be assessed by measuring SOD-1 protein levels. Protein levels of SOD-1 can be evaluated or quantitated in a variety of ways well known in the art, such as immunoprecipitation, Western blot analysis (immunoblotting), enzyme-linked immunosorbent assay (ELISA), quantitative protein assays, protein activity assays (for example, caspase activity assays), immunohistochemistry, immunocytochemistry or fluorescence-activated cell sorting (FACS). Antibodies directed to a target can be identified and obtained from a variety of sources, such as the MSRS catalog of antibodies (Aerie Corporation, Birmingham, MI), or can be prepared via conventional monoclonal or polyclonal antibody generation methods well known in the art. In certain instances, the compounds herein provide improved reduction in protein levels.
In vivo testing of antisense compounds
Antisense compounds, for example, modified oligonucleotides, are tested in animals to assess their ability to inhibit expression of SOD-1 and produce phenotypic changes, such as, improved motor function. In certain instances, motor function is measured by walking initiation analysis, rotarod, grip strength, pole climb, open field performance, balance beam, hindpaw footprint testing in the animal. Testing may be performed in normal animals, or in experimental disease models. For administration to animals, oligonucleotides are formulated in a pharmaceutically acceptable diluent, such as phosphate-buffered saline. Administration includes parenteral routes of administration, such as intraperitoneal, intravenous, and subcutaneous. Oligonucleotide dosage and dosing frequency depends upon multiple factors such as, but not limited to, route of administration and animal body weight. Following a period of treatment with oligonucleotides, RNA is isolated from CNS tissue or CSF and changes in SOD-1 nucleic acid expression are measured.
Certain Indications
In certain instances, described herein are methods, compounds, and compositions of treating an individual comprising administering one or more pharmaceutical compositions described herein. In certain instances, the individual has a neurodegenerative disease. In certain instances, the individual is at risk for developing a neurodegenerative disease, including, but not limited to, amyotrophic lateral sclerosis (ALS). In certain instances, the individual has been identified as having a SOD-1 associated disease. In certain instances, described herein are methods for prophylactically reducing SOD-1 expression in an individual. Certain instances include treating an individual in need thereof by administering to an individual a therapeutically effective amount of an antisense compound targeted to a SOD-1 nucleic acid.
In one instance, administration of a therapeutically effective amount of an antisense compound targeted to a SOD-1 nucleic acid is accompanied by monitoring of SOD-1 levels in an individual, to determine an individual's response to administration of the antisense compound. An individual's response to administration of the antisense compound may be used by a physician to determine the amount and duration of therapeutic intervention.
In certain instances, administration of an antisense compound targeted to a SOD-1 nucleic acid results in reduction of SOD-1 expression by at least 15, 20, 25, 30, 35, 40, 45, 50, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100%, or a range defined by any two of these values. In certain instances, administration of an antisense compound targeted to a SOD-1 nucleic acid results in improved motor function in an animal. In certain instances, administration of a SOD-1 antisense compound improves motor function by at least 15, 20, 25, 30, 35, 40, 45, 50, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100%, or a range defined by any two of these values.
In certain instances, pharmaceutical compositions comprising an antisense compound targeted to SOD-1 are used for the preparation of a medicament for treating a patient suffering or susceptible to a neurodegenerative disease including amyotrophic lateral sclerosis (ALS).
Certain Comparator Compositions
Antisense oligonucleotides targeting human SOD-1 were described in an earlier publication (see WO 2005/040180 ). Several oligonucleotides (ISIS 333611, ISIS 146144, ISIS 146145, ISIS 150437, ISIS 150441, ISIS 150443, ISIS 150444, ISIS 150445, ISIS 150446, ISIS 150447, ISIS 150448, ISIS 150449, ISIS 150452, ISIS 150454, ISIS 150458, ISIS 150460, ISIS 150462-150467, ISIS 150470, ISIS 150472, ISIS 150474, ISIS 150475, ISIS 150476, ISIS 150479-150483, ISIS 150488, ISIS 150489, ISIS 150490, ISIS 150491-150493, ISIS 150495-150498, ISIS 150511, ISIS 333605, ISIS 333606, ISIS 333609-333617, ISIS 333619, ISIS 333620-333636, ISIS 333638, and ISIS 333640) described therein, were used as comparator compounds throughout select screens for new antisense compounds described herein.
In certain instances, ISIS 333611, a 5-10-5 MOE gapmer, having a sequence of (from 5' to 3') CCGTCGCCCTTCAGCACGCA (incorporated herein as SEQ ID NO: 21), wherein each internucleoside linkage is a phosphorothioate linkage, each cytosine is a 5-methylcytosine, and each of nucleosides 1-5 and 16-20 (from 5' to 3') comprise a 2'-O-methoxyethyl moiety was used as a comparator compound. ISIS 333611 was selected as a comparator compound because it exhibited high levels of dose-dependent inhibition in various studies as described in WO 2005/040180 . Additionally, phase 1 human clinical trials were completed using ISIS 333611. See, MILLER et al., "An antisense oligonucleotide against SOD1 delivered intrathecally for patients with SOD1 familial amyotrophic lateral sclerosis: a phase 1, randomised, first-in-man study" Lancet Neurol. (2013) 12(5): 435-442. Thus, ISIS 333611 was deemed a highly efficacious and potent compound with an acceptable safety profile (such that it was tested in human patients).
In certain instances, the compounds described herein benefit from one or more improved properties relative to the antisense compounds described in WO 2005/040180 . Some of the improved properties are demonstrated in the examples provided herein. In certain instances, compounds described herein are more efficacious, potent, and/or tolerable in various in vitro and in vivo studies than comparator compounds described herein, including ISIS 333611. In certain instances, ISIS 666853, ISIS 666859, ISIS 666919, ISIS 666921, ISIS 666922, ISIS 666869, ISIS 666870, and ISIS 666867 are more efficacious and/or potent in various in vitro and in vivo studies than comparator compounds described herein, including ISIS 333611. In certain instances, ISIS 666853, ISIS 666859, ISIS 666919, ISIS 666921, ISIS 666922, ISIS 666869, ISIS 666870, and ISIS 666867 are more tolerable in one or more tolerability assays in animals than comparator compounds described herein, including ISIS 333611. This is despite 333611 being sufficiently well tolerated to progress to human clinical trials.
In certain instances, certain compounds described herein are more efficacious than comparator compounds by virtue of an in vitro IC50 of less than 2 µM, less than 1.9 µM, less than 1.8 µM, less than 1.7 µM, less than 1.6 µM, less than 1.5 µM, less than 1.4 µM, less than 1.3 µM, less than 1.2 µM, less than 1.1 µM, less than 1 µM, less than 0.9 µM, less than 0.8 µM, less than 0.7 µM, less than 0.6 µM, or less than 0.5 µM less than 0.4 µM, less than 0.3 µM, less than 0.2 µM, less than 0.1 µM, when tested in human cells, for example, in the HepG2 A431 or SH-SY5Y cell lines (For example, see Examples 6-11).
In certain instances, certain compounds described herein are more efficacious than comparator compounds by virtue of their ability to inhibit SOD-1 expression in vivo. In certain instances, the compounds inhibit SOD-1 in lumbar spinal cord and cervical spinal cord by at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90% or at least 95% in, for example, a transgenic animal model.
In certain instances, certain compounds described herein are more tolerable than comparator compounds on the basis of reduced microglial marker levels (e.g.,IBA1), reduced astrocytic marker levels (e.g., GFAP), and/or FOB scores in rats, mice, and/or monkeys. See, for example, Examples 14, 15, 18, and 19.
ISIS 666853
For example, as provided in Example 12 (hereinbelow), ISIS 666853 achieved 81% inhibition in lumbar spinal cord and 74% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
For example, as provided in Example 14 (hereinbelow), ISIS 666853 achieved a FOB score of 0 whereas ISIS 333611 achieved a FOB score of 4 in Sprague-Dawley rats after 3 hours when treated with 3 mg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666853 treated rats as compared to ISIS 333611 treated rats.
For example, as provided in Example 15 (hereinbelow), ISIS 666853 achieved an ED50 of 81.3 and 242.6 in lumbar tissue and cervical tissue (respectively) in SOD-1 transgenic rats when treated intrathecally with 10, 30, 100, 300, or 3000 µg of oligonucleotide. ED50 in lumbar and cervical tissues could not be calculated in ISIS 333611 treated transgenic rats because the highest concentration tested (3000 µg) filed to inhibit human SOD-1 mRNA greater than 55-65%.
For example, as provided in Example 16 (hereinbelow), at doses of 1 mg and 3 mg ISIS 666853 achieved 3 hour FOB scores of 0.0 and 0.5 (respectively) whereas ISIS 333611 achieved FOB scores of 3.0 and 4.9 (respectively). At doses of 1 mg and 3 mg ISIS 666853 achieved 8 week FOB scores of 0.0 and 0.0 (respectively) whereas ISIS 333611 achieved FOB scores of 0.0 and 1.2 (respectively).
For example, as provided in Example 17 (hereinbelow), ISIS 666853 achieved an ED50 of 136 and 188 in lumbar tissue and cortex tissue (respectively) whereas ISIS 333611 achieved an ED50 of 401 and 786 in lumbar tissue and cortex tissue (respectively) in SOD-1 transgenic mice when treated with an intracerebral ventricular bolus of 10, 30, 100, 300, or 700 µg of oligonucleotide.
For example, as provided in Example 18 (hereinbelow), ISIS 666853 achieved a FOB score of 1.25 whereas ISIS 333611 achieved a FOB score of 6.5 in C57bl6 mice after 3 hours when treated with 700 µg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666853 treated mice as compared to ISIS 333611 treated mice.
ISIS 666859
For example, as provided in Example 12 (hereinbelow), ISIS 666859 achieved 79% inhibition in lumbar spinal cord and 64% inhibition in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
For example, as provided in Example 14 (hereinbelow), ISIS 666859 achieved a FOB score of 1 whereas ISIS 333611 achieved a FOB score of 4 in Sprague-Dawley rats after 3 hours when treated with 3 mg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666859 treated rats as compared to ISIS 333611 treated rats.
For example, as provided in Example 15 (hereinbelow), ISIS 666859 achieved an ED50 of 74.0 and 358.8 in lumbar tissue and cervical tissue (respectively) in SOD-1 transgenic rats when treated intrathecally with 10, 30, 100, 300, or 3000 µg of oligonucleotide. ED50 in lumbar and cervical tissues could not be calculated in ISIS 333611 treated transgenic rats because the highest concentration tested (3000 µg) filed to inhibit human SOD-1 mRNA greater than 55-65%.
For example, as provided in Example 16 (hereinbelow), at doses of 1 mg and 3 mg ISIS 666859 achieved 3 hour FOB scores of 0.0 and 2.1 (respectively) whereas ISIS 333611 achieved FOB scores of 3.0 and 4.9 (respectively). At doses of 1 mg and 3 mg ISIS 666859 achieved 8 week FOB scores of 0.0 and 0.3 (respectively) whereas ISIS 333611 achieved FOB scores of 0.0 and 1.2 (respectively).
For example, as provided in Example 17 (hereinbelow), ISIS 666859 achieved an ED50 of 106 and 206 in lumbar tissue and cortex tissue (respectively) whereas ISIS 333611 achieved an ED50 of 401 and 786 in lumbar tissue and cortex tissue (respectively) in SOD-1 transgenic mice when treated with an intracerebral ventricular bolus of 10, 30, 100, 300, or 700 µg of oligonucleotide.
For example, as provided in Example 18 (hereinbelow), ISIS 666859 achieved a FOB score of 1.75 whereas ISIS 333611 achieved a FOB score of 6.5 in C57bl6 mice after 3 hours when treated with 700 µg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666859 treated mice as compared to ISIS 333611 treated mice.
ISIS 666919
For example, as provided in Example 12 (hereinbelow), ISIS 666919 achieved 76% inhibition in lumbar spinal cord and 68% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
For example, as provided in Example 14 (hereinbelow), ISIS 666919 achieved a FOB score of 2 whereas ISIS 333611 achieved a FOB score of 4 in Sprague-Dawley rats after 3 hours when treated with 3 mg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666919 treated rats as compared to ISIS 333611 treated rats.
For example, as provided in Example 15 (hereinbelow), ISIS 666919 achieved an ED50 of 104.1 and 613.5 in lumbar tissue and cervical tissue (respectively) in SOD-1 transgenic rats when treated intrathecally with 10, 30, 100, 300, or 3000 µg of oligonucleotide. ED50 in lumbar and cervical tissues could not be calculated in ISIS 333611 treated transgenic rats because the highest concentration tested (3000 µg) filed to inhibit human SOD-1 mRNA greater than 55-65%.
For example, as provided in Example 16 (hereinbelow), at doses of 1 mg and 3 mg ISIS 666919 achieved 3 hour FOB scores of 1.3 and 3.5 (respectively) whereas ISIS 333611 achieved FOB scores of 3.0 and 4.9 (respectively). At doses of 1 mg and 3 mg ISIS 666919 achieved 8 week FOB scores of 0.0 and 0.1 (respectively) whereas ISIS 333611 achieved FOB scores of 0.0 and 1.2 (respectively).
For example, as provided in Example 17 (hereinbelow), ISIS 666919 achieved an ED50 of 168 in lumbar tissue whereas ISIS 333611 achieved an ED50 of 401 in lumbar tissue in SOD-1 transgenic mice when treated with an intracerebral ventricular bolus of 10, 30, 100, 300, or 700 µg of oligonucleotide.
For example, as provided in Example 18 (hereinbelow), ISIS 666919 achieved a FOB score of 0.0 whereas ISIS 333611 achieved a FOB score of 6.5 in C57bl6 mice after 3 hours when treated with 700 µg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666919 treated mice as compared to ISIS 333611 treated mice.
ISIS 666921
For example, as provided in Example 12 (hereinbelow), ISIS 66621 achieved 71% inhibition in lumbar spinal cord and 65% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
For example, as provided in Example 14 (hereinbelow), ISIS 666921 achieved a FOB score of 2 whereas ISIS 333611 achieved a FOB score of 4 in Sprague-Dawley rats after 3 hours when treated with 3 mg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666919 treated rats as compared to ISIS 333611 treated rats.
ISIS 666922
For example, as provided in Example 12 (hereinbelow), ISIS 666922 achieved 67% inhibition in lumbar spinal cord and 62% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
For example, as provided in Example 14 (hereinbelow), ISIS 666922 achieved a FOB score of 3 whereas ISIS 333611 achieved a FOB score of 4 in Sprague-Dawley rats after 3 hours when treated with 3 mg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666919 treated rats as compared to ISIS 333611 treated rats.
ISIS 666869
For example, as provided in Example 12 (hereinbelow), ISIS 666869 achieved 82% inhibition in lumbar spinal cord and 81% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
ISIS 666870
For example, as provided in Example 12 (hereinbelow), ISIS 666870 achieved 76% inhibition in lumbar spinal cord and 68% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
For example, as provided in Example 15 (hereinbelow), ISIS 666870 achieved an ED50 of 139.4 and 1111 in lumbar tissue and cervical tissue (respectively) in SOD-1 transgenic rats when treated intrathecally with 10, 30, 100, 300, or 3000 µg of oligonucleotide. ED50 in lumbar and cervical tissues could not be calculated in ISIS 333611 treated transgenic rats because the highest concentration tested (3000 µg) filed to inhibit human SOD-1 mRNA greater than 55-65%.
For example, as provided in Example 17 (hereinbelow), ISIS 666870 achieved an ED50 of 148 and 409 in lumbar tissue and cortex tissue (respectively) whereas ISIS 333611 achieved an ED50 of 401 and 786 in lumbar tissue and cortex tissue (respectively) in SOD-1 transgenic mice when treated with an intracerebral ventricular bolus of 10, 30, 100, 300, or 700 µg of oligonucleotide.
For example, as provided in Example 18 (hereinbelow), ISIS 666870 achieved a FOB score of 4.75 whereas ISIS 333611 achieved a FOB score of 6.5 in C57bl6 mice after 3 hours when treated with 700 µg of oligonucleotide.
ISIS 666867
For example, as provided in Example 12 (hereinbelow), ISIS 666867 achieved 59% inhibition in lumbar spinal cord and 48% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
Certain Compositions 1. ISIS 666853
In certain instances, ISIS 666853 is characterized as a 5-10-5 MOE gapmer, having a sequence of (from 5' to 3') CAGGATACATTTCTACAGCT (incorporated herein as SEQ ID NO: 725), wherein each of nucleosides 1-5 and 16-20 are 2'-O-methoxyethylribose modified nucleosides, and each of nucleosides 6-15 are 2'-deoxynucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 4 to 5, 16 to 17, and 18 to 19 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 3 to 4, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 13 to 14, 14 to 15, 15 to 16, 17 to 18, and 19 to 20 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666853 is described by the following chemical notation: mCes Aeo Ges Geo Aes Tds Ads mCds Ads Tds Tds Tds mCds Tds Ads mCeo Aes Geo mCes Te; wherein,
A =
an adenine,
mC =
a 5-methylcytosine
G =
a guanine,
T =
a thymine,
e =
a 2'-O-methoxyethylribose modified sugar,
d =
a 2'-deoxyribose sugar,
s =
a phosphorothioate internucleoside linkage, and
o =
a phosphodiester internucleoside linkage.
In certain instances, ISIS 666853 is described by the following chemical structure:
2. ISIS 666859
In certain instances, ISIS 666859 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') TTAATGTTTATCAGGAT (incorporated herein as SEQ ID NO: 1351), consisting of seventeen nucleosides, wherein each of nucleosides 1-4 and 15-17 are 2'-O-methoxyethylribose nucleosides, wherein each of nucleosides 13 and 14 are cEt modified nucleosides, wherein each of nucleosides 5-12 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 13 to 14, 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 4 to 5, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5 -methylcytosine.
In certain instances, ISIS 666859 is described by the following chemical notation: Tes Teo Aeo Aes Tds Gds Tds Tds Tds Ads Tds mCds Ako Gko Ges Aes Te; wherein,
A =
an adenine,
mC =
a 5-methylcytosine
G =
a guanine,
T =
a thymine,
e =
a 2'-O-methoxyethylribose modified sugar,
k =
a cEt modified sugar,
d =
a 2'-deoxyribose sugar,
s =
a phosphorothioate internucleoside linkage, and
o =
a phosphodiester internucleoside linkage.
In certain instances, ISIS 666859 is described by the following chemical structure:
3. ISIS 666919
In certain instances, ISIS 666919 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') GGATACATTTCTACAGC (incorporated herein as SEQ ID NO: 1342), consisting of seventeen nucleosides, wherein each of nucleosides 1-4 and 16-17 are 2'-O-methoxyethylribose modified nucleosides, wherein each of nucleosides 14 and 15 are cEt modified nucleosides, wherein each of nucleosides 5-13 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 4 to 5, and 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 13 to 14, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666919 is described by the following chemical notation: Ges Geo Aeo Teo Ads mCds Ads Tds Tds Tds mCds Tds Ads mCko Aks Ges mCe; wherein,
A =
an adenine,
mC =
a 5-methylcytosine
G =
a guanine,
T =
a thymine,
e =
a 2'-O-methoxyethylribose modified sugar,
k =
a cEt modified sugar,
d =
a 2'-deoxyribose sugar,
s =
a phosphorothioate internucleoside linkage, and
o =
a phosphodiester internucleoside linkage.
In certain instances, ISIS 666919 is described by the following chemical structure:
4. ISIS 666921
In certain instances, ISIS 666921 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') GGATACATTTCTACAGC (incorporated herein as SEQ ID NO: 1342), consisting of seventeen nucleosides, wherein each of nucleosides 1-5 and 16-17 are 2'-O-methoxyethylribose modified nucleosides, wherein each of nucleosides 14-15 are cEt modified nucleosides, wherein each of nucleosides 6-13 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 4 to 5, and 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 13 to 14, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666921 is described by the following chemical notation: Ges Geo Aeo Teo Aes mCds Ads Tds Tds Tds mCds Tds Ads mCko Aks Ges mCe; wherein,
A =
an adenine,
mC =
a 5-methylcytosine
G =
a guanine,
T =
a thymine,
e =
a 2'-O-methoxyethylribose modified sugar,
k =
a cEt modified sugar,
d =
a 2'-deoxyribose sugar,
s =
a phosphorothioate internucleoside linkage, and
o =
a phosphodiester internucleoside linkage.
In certain instances, ISIS 666921 is described by the following chemical structure:
5. ISIS 666922
In certain instances, ISIS 666922 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') GGATACATTTCTACAGC (incorporated herein as SEQ ID NO: 1342), consisting of seventeen nucleosides, wherein each of nucleosides 1-4 and 15-17 are 2'-O-methoxyethylribose modified nucleosides, wherein each of nucleosides 5 and 14 are cEt modified nucleosides, wherein each of nucleosides 6-13 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 4 to 5, and 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 13 to 14, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666922 is described by the following chemical notation: Ges Geo Aeo Teo Aks mCds Ads Tds Tds Tds mCds Tds Ads mCko Aes Ges mCe; wherein,
A =
an adenine,
mC =
a 5-methylcytosine
G =
a guanine,
T =
a thymine,
e =
a 2'-O-methoxyethylribose modified sugar,
k =
a cEt modified sugar,
d =
a 2'-deoxyribose sugar,
s =
a phosphorothioate internucleoside linkage, and
o =
a phosphodiester internucleoside linkage.
In certain instances, ISIS 666922 is described by the following chemical structure:
6. ISIS 666869
In certain instances, ISIS 666869 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') AGTGTTTAATGTTTATC (incorporated herein as SEQ ID NO: 1173), consisting of seventeen nucleosides, wherein each of nucleosides 1, 3, 14, and 16-17 are 2'-O-methoxyethylribose modified nucleosides, wherein each of nucleosides 2, 4, 13, and 15 are cEt modified nucleosides, wherein each of nucleosides 5-12 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 13 to 14, and 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 4 to 5, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666869 is described by the following chemical notation: Aes Gko Teo Gks Tds Tds Tds Ads Ads Tds Gds Tds Tko Teo Aks Tes mCe; wherein,
A =
an adenine,
mC =
a 5-methylcytosine
G =
a guanine,
T =
a thymine,
e =
a 2'-O-methoxyethylribose modified sugar,
k =
a cEt modified sugar,
d =
a 2'-deoxyribose sugar,
s =
a phosphorothioate internucleoside linkage, and
o =
a phosphodiester internucleoside linkage.
In certain instances, ISIS 666869 is described by the following chemical structure:
7. ISIS 666870
In certain instances, ISIS 666870 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') AGTGTTTAATGTTTATC (incorporated herein as SEQ ID NO: 1173), consisting of seventeen nucleosides, wherein each of nucleosides 1, 3, 13-17 are 2'-O-methoxyethylribose modified nucleosides, wherein each of nucleosides 2 and 4 are cEt modified nucleosides, wherein each of nucleosides 5-12 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 13 to 14, and 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 4 to 5, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666870 is described by the following chemical notation: Aes Gko Teo Gks Tds Tds Tds Ads Ads Tds Gds Tds Teo Teo Aes Tes mCe; wherein,
A =
an adenine,
mC =
a 5-methylcytosine
G =
a guanine,
T =
a thymine,
e =
a 2'-O-methoxyethylribose modified sugar,
k =
a cEt modified sugar,
d =
a 2'-deoxyribose sugar,
s =
a phosphorothioate internucleoside linkage, and
o =
a phosphodiester internucleoside linkage.
In certain instances, ISIS 666870 is described by the following chemical structure:
8. ISIS 666867
In certain instances, ISIS 666867 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') AGTGTTTAATGTTTATC (incorporated herein as SEQ ID NO: 1173), consisting of seventeen nucleosides, wherein each of nucleosides 1-2 and 13-17 are 2'-O-methoxyethylribose modified nucleosides, wherein each of nucleosides 3 and 4 are cEt modified nucleosides, wherein each of nucleosides 5-12 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 13 to 14, and 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 4 to 5, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666867 is described by the following chemical notation: Aes Geo Tko Gks Tds Tds Tds Ads Ads Tds Gds Tds Teo Teo Aes Tes mCe; wherein,
A =
an adenine,
mC =
a 5-methylcytosine
G =
a guanine,
T =
a thymine,
e =
a 2'-O-methoxyethylribose modified sugar,
k =
a cEt modified sugar,
d =
a 2'-deoxyribose sugar,
s =
a phosphorothioate internucleoside linkage, and
o =
a phosphodiester internucleoside linkage.
In certain instances, ISIS 666867 is described by the following chemical structure:
EXAMPLES Non-limiting disclosure and incorporation by reference
While certain compounds, compositions, and methods described herein have been described with specificity in accordance with certain instances, the following examples serve only to illustrate the compounds described herein and are not intended to limit the same.
Example 1: Inhibition of human superoxide dismutase 1, soluble (SOD-1) in HepG2 cells by MOE gapmers
Modified oligonucleotides were designed targeting a superoxide dismutase 1, soluble (SOD-1) nucleic acid and were tested for their effects on SOD-1 mRNA in vitro. ISIS 146144, ISIS 146145, ISIS 150437, ISIS 150441, ISIS 150443, ISIS 150444, ISIS 150445, ISIS 150446, ISIS 150447, ISIS 150448, ISIS 150449, ISIS 150452, ISIS 150454, ISIS 150458, ISIS 150460, ISIS 150462-150467, ISIS 150470, ISIS 150472, ISIS 150474, ISIS 150475, ISIS 150476, ISIS 150479-150483, ISIS 150488, ISIS 150489, ISIS 150490, ISIS 150491-150493, ISIS 150495-150498, ISIS 150511, ISIS 333605, ISIS 333606, ISIS 333609-333617, ISIS 333619, ISIS 333620-333636, ISIS 333638, and ISIS 333640, previously disclosed in WO 2005/040180, were also included in this assay. ISIS 333611, previously disclosed in WO 2005/040180 , was also designated as a benchmark or comparator oligonucleotide. ISIS 333611 was recently tested in human clinical trials. See, MILLER et al., "An antisense oligonucleotide against SOD1 delivered intrathecally for patients with SOD1 familial amyotrophic lateral sclerosis: a phase 1, randomised, first-in-man study" Lancet Neurol. (2013) 12(5): 435-442.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cultured HepG2 cells at a density of 20,000 cells per well were transfected using electroporation with 7,000 nM modified oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR.
Human primer probe set RTS3898 (forward sequence CTCTCAGGAGACCATTGCATCA, designated herein as SEQ ID NO: 11; reverse sequence TCCTGTCTTTGTACTTTCTTCATTTCC; designated herein as SEQ ID NO: 12; probe sequence CCGCACACTGGTGGTCCATGAAAA, designated herein as SEQ ID NO: 13) was used to measure mRNA levels. In cases where the oligonucleotide overlapped the amplicon of the primer probe set, an alternative primer probe set, HTS90 (forward sequence CGTGGCCTAGCGAGTTATGG, designated herein as SEQ ID NO: 14; reverse sequence GAAATTGATGATGCCCTGCA; designated herein as SEQ ID NO: 15; probe sequence ACGAAGGCCGTGTGCGTGCTGX, designated herein as SEQ ID NO: 16), was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. 'n.d.' indicates that inhibition levels were not measured using the particular primer probe set.
The newly designed modified oligonucleotides in the Tables below were designed as 5-10-5 MOE gapmers. The 5-10-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of ten 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five nucleosides each. Each nucleoside in the 5' wing segment and each nucleoside in the 3' wing segment has a 2'-MOE modification. The internucleoside linkages throughout each gapmer are phosphorothioate linkages. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). 'n/a' indicates that the modified oligonucleotide does not target that particular gene sequence with 100% complementarity. Table 1
Percent Inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence % inhibition with RTS3898 SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
590065 1 20 CGCCCACTCTGGCCCCAAAC 7 807 826 118
590066 35 54 CCGCGACTACTTTATAGGCC 5 841 860 119
333611 167 186 CCGTCGCCCTTCAGCACGCA 85 973 992 21
590067 202 221 CCTTCTGCTCGAAATTGATG 74 1008 1027 120
590068 203 222 TCCTTCTGCTCGAAATTGAT 58 n/a n/a 121
590069 204 223 TTCCTTCTGCTCGAAATTGA 50 n/a n/a 122
590070 205 224 TTTCCTTCTGCTCGAAATTG 47 n/a n/a 123
590071 206 225 CTTTCCTTCTGCTCGAAATT 31 n/a n/a 124
590072 207 226 ACTTTCCTTCTGCTCGAAAT 42 n/a n/a 125
590073 208 227 TACTTTCCTTCTGCTCGAAA 38 n/a n/a 126
590074 209 228 TTACTTTCCTTCTGCTCGAA 33 n/a n/a 127
590075 210 229 ATTACTTTCCTTCTGCTCGA 39 n/a n/a 128
590076 211 230 CATTACTTTCCTTCTGCTCG 28 n/a n/a 129
590077 212 231 CCATTACTTTCCTTCTGCTC 58 n/a n/a 130
590078 213 232 TCCATTACTTTCCTTCTGCT 58 n/a n/a 131
590079 214 233 GTCCATTACTTTCCTTCTGC 69 n/a n/a 132
590080 215 234 GGTCCATTACTTTCCTTCTG 68 n/a n/a 133
590081 216 235 TGGTCCATTACTTTCCTTCT 61 n/a n/a 134
590082 217 236 CTGGTCCATTACTTTCCTTC 69 n/a n/a 135
590083 218 237 ACTGGTCCATTACTTTCCTT 54 4972 4991 136
150445 219 238 CACTGGTCCATTACTTTCCT 84 4973 4992 22
590084 220 239 TCACTGGTCCATTACTTTCC 65 4974 4993 137
590085 221 240 TTCACTGGTCCATTACTTTC 45 4975 4994 138
590086 222 241 CTTCACTGGTCCATTACTTT 43 4976 4995 139
590087 223 242 CCTTCACTGGTCCATTACTT 67 4977 4996 140
590088 224 243 ACCTTCACTGGTCCATTACT 59 4978 4997 141
436841 225 244 CACCTTCACTGGTCCATTAC 65 4979 4998 142
150446 226 245 ACACCTTCACTGGTCCATTA 83 4980 4999 23
393336 227 246 CACACCTTCACTGGTCCATT 81 4981 5000 143
150447 228 247 CCACACCTTCACTGGTCCAT 89 4982 5001 24
590089 229 248 CCCACACCTTCACTGGTCCA 82 4983 5002 144
590090 230 249 CCCCACACCTTCACTGGTCC 89 4984 5003 145
590091 231 250 TCCCCACACCTTCACTGGTC 84 4985 5004 146
590092 232 251 TTCCCCACACCTTCACTGGT 61 4986 5005 147
590093 233 252 CTTCCCCACACCTTCACTGG 60 4987 5006 148
590094 234 253 GCTTCCCCACACCTTCACTG 78 4988 5007 149
590095 235 254 TGCTTCCCCACACCTTCACT 72 4989 5008 150
590096 236 255 ATGCTTCCCCACACCTTCAC 76 4990 5009 151
393337 237 256 AATGCTTCCCCACACCTTCA 76 4991 5010 152
590097 238 257 TAATGCTTCCCCACACCTTC 68 4992 5011 153
590098 264 283 TCCATGCAGGCCTTCAGTCA 63 5018 5037 154
590099 265 284 ATCCATGCAGGCCTTCAGTC 64 5019 5038 155
590100 266 285 AATCCATGCAGGCCTTCAGT 52 5020 5039 156
590101 267 286 GAATCCATGCAGGCCTTCAG 53 5021 5040 157
590102 268 287 GGAATCCATGCAGGCCTTCA 65 5022 5041 158
393339 269 288 TGGAATCCATGCAGGCCTTC 43 5023 5042 159
590103 270 289 ATGGAATCCATGCAGGCCTT 56 5024 5043 160
590104 271 290 CATGGAATCCATGCAGGCCT 57 5025 5044 161
590105 272 291 ACATGGAATCCATGCAGGCC 52 5026 5045 162
590106 273 292 AACATGGAATCCATGCAGGC 54 5027 5046 163
590107 274 293 GAACATGGAATCCATGCAGG 51 5028 5047 164
590108 275 294 TGAACATGGAATCCATGCAG 58 5029 5048 165
393340 276 295 ATGAACATGGAATCCATGCA 62 5030 5049 166
590109 316 335 GACCTGCACTGGTACAGCCT 69 7632 7651 167
436847 317 336 GGACCTGCACTGGTACAGCC 74 7633 7652 168
590110 318 337 AGGACCTGCACTGGTACAGC 70 7634 7653 169
590111 319 338 GAGGACCTGCACTGGTACAG 74 7635 7654 170
590112 320 339 TGAGGACCTGCACTGGTACA 68 7636 7655 171
590113 321 340 GTGAGGACCTGCACTGGTAC 80 7637 7656 172
393343 322 341 AGTGAGGACCTGCACTGGTA 79 7638 7657 173
590114 323 342 AAGTGAGGACCTGCACTGGT 65 7639 7658 174
590115 324 343 AAAGTGAGGACCTGCACTGG 48 7640 7659 175
590116 325 344 TAAAGTGAGGACCTGCACTG 51 7641 7660 176
436848 326 345 TTAAAGTGAGGACCTGCACT 59 7642 7661 177
590117 327 346 ATTAAAGTGAGGACCTGCAC 43 7643 7662 178
590118 328 347 GATTAAAGTGAGGACCTGCA 43 7644 7663 179
590119 329 348 GGATTAAAGTGAGGACCTGC 67 7645 7664 180
590120 330 349 AGGATTAAAGTGAGGACCTG 63 7646 7665 181
436849 331 350 GAGGATTAAAGTGAGGACCT 64 7647 7666 182
393344 332 351 AGAGGATTAAAGTGAGGACC 59 7648 7667 183
590121 333 352 TAGAGGATTAAAGTGAGGAC 52 7649 7668 184
590122 334 353 ATAGAGGATTAAAGTGAGGA 36 7650 7669 185
590123 335 354 GATAGAGGATTAAAGTGAGG 25 7651 7670 186
590124 336 355 GGATAGAGGATTAAAGTGAG 34 7652 7671 187
590125 337 356 TGGATAGAGGATTAAAGTGA 49 7653 7672 188
590126 338 357 CTGGATAGAGGATTAAAGTG 34 7654 7673 189
590127 339 358 TCTGGATAGAGGATTAAAGT 39 7655 7674 190
590128 360 379 ATCCTTTGGCCCACCGTGTT 60 7676 7695 191
Table 2
Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID : 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence % inhibition with RTS3898 % inhibition with HTS90 SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 CCGTCGCCCTTCAGCACGCA 76 95 973 992 21
393347 361 380 CATCCTTTGGCCCACCGTGT 70 72 7677 7696 192
590129 362 381 TCATCCTTTGGCCCACCGTG 66 68 7678 7697 193
590130 363 382 TTCATCCTTTGGCCCACCGT 53 55 7679 7698 194
590131 364 383 CTTCATCCTTTGGCCCACCG 52 50 7680 7699 195
590132 365 384 TCTTCATCCTTTGGCCCACC 61 64 7681 7700 196
590133 366 385 CTCTTCATCCTTTGGCCCAC 45 54 7682 7701 197
590134 367 386 TCTCTTCATCCTTTGGCCCA 44 34 7683 7702 198
590135 368 387 CTCTCTTCATCCTTTGGCCC 52 49 7684 7703 199
590136 369 388 CCTCTCTTCATCCTTTGGCC 48 47 7685 7704 200
590137 370 389 GCCTCTCTTCATCCTTTGGC 35 44 n/a n/a 201
590138 371 390 TGCCTCTCTTCATCCTTTGG 52 45 n/a n/a 202
590139 372 391 ATGCCTCTCTTCATCCTTTG 50 45 n/a n/a 203
590140 373 392 CATGCCTCTCTTCATCCTTT 49 27 n/a n/a 204
590141 374 393 ACATGCCTCTCTTCATCCTT 34 18 n/a n/a 205
590142 375 394 AACATGCCTCTCTTCATCCT 38 35 n/a n/a 206
333612 376 395 CAACATGCCTCTCTTCATCC 34 33 n/a n/a 25
333613 377 396 CCAACATGCCTCTCTTCATC 46 55 n/a n/a 26
333614 378 397 TCCAACATGCCTCTCTTCAT 42 48 n/a n/a 27
333615 379 398 CTCCAACATGCCTCTCTTCA 42 15 n/a n/a 28
333616 380 399 TCTCCAACATGCCTCTCTTC 35 44 n/a n/a 29
333617 381 400 GTCTCCAACATGCCTCTCTT 42 47 n/a n/a 30
590143 501 520 TGCTTTTTCATGGACCACCA n.d. 65 n/a n/a 207
590144 502 521 CTGCTTTTTCATGGACCACC n.d. 70 n/a n/a 208
590145 503 522 TCTGCTTTTTCATGGACCAC n.d. 64 n/a n/a 209
436860 504 523 ATCTGCTTTTTCATGGACCA n.d. 65 n/a n/a 210
590146 505 524 CATCTGCTTTTTCATGGACC n.d. 68 9655 9674 211
590147 506 525 TCATCTGCTTTTTCATGGAC n.d. 59 9656 9675 212
393359 507 526 GTCATCTGCTTTTTCATGGA n.d. 56 9657 9676 213
590148 508 527 AGTCATCTGCTTTTTCATGG n.d. 45 9658 9677 214
590149 509 528 AAGTCATCTGCTTTTTCATG n.d. 23 9659 9678 215
590150 510 529 CAAGTCATCTGCTTTTTCAT n.d. 43 9660 9679 216
590151 511 530 CCAAGTCATCTGCTTTTTCA n.d. 72 9661 9680 217
489513 512 531 CCCAAGTCATCTGCTTTTTC n.d. 73 9662 9681 218
590152 513 532 GCCCAAGTCATCTGCTTTTT n.d. 74 9663 9682 219
436861 514 533 TGCCCAAGTCATCTGCTTTT n.d. 75 9664 9683 220
590153 515 534 TTGCCCAAGTCATCTGCTTT n.d. 47 9665 9684 221
393360 516 535 TTTGCCCAAGTCATCTGCTT n.d. 57 9666 9685 222
590154 517 536 CTTTGCCCAAGTCATCTGCT n.d. 79 9667 9686 223
590155 518 537 CCTTTGCCCAAGTCATCTGC n.d. 67 9668 9687 224
590156 519 538 ACCTTTGCCCAAGTCATCTG n.d. 57 9669 9688 225
333620 520 539 CACCTTTGCCCAAGTCATCT n.d. 68 9670 9689 31
333621 521 540 CCACCTTTGCCCAAGTCATC n.d. 72 9671 9690 32
333622 522 541 TCCACCTTTGCCCAAGTCAT n.d. 77 9672 9691 33
333623 523 542 TTCCACCTTTGCCCAAGTCA n.d. 73 9673 9692 34
333624 524 543 TTTCCACCTTTGCCCAAGTC n.d. 77 9674 9693 35
333625 525 544 ATTTCCACCTTTGCCCAAGT n.d. 79 9675 9694 36
333626 526 545 CATTTCCACCTTTGCCCAAG n.d. 72 9676 9695 37
333627 527 546 TCATTTCCACCTTTGCCCAA n.d. 55 9677 9696 38
333628 528 547 TTCATTTCCACCTTTGCCCA n.d. 59 9678 9697 39
333629 529 548 CTTCATTTCCACCTTTGCCC n.d. 73 9679 9698 40
333630 530 549 TCTTCATTTCCACCTTTGCC n.d. 76 9680 9699 41
333631 531 550 TTCTTCATTTCCACCTTTGC n.d. 62 9681 9700 42
333632 532 551 TTTCTTCATTTCCACCTTTG n.d. 64 9682 9701 43
333633 533 552 CTTTCTTCATTTCCACCTTT n.d. 69 9683 9702 44
333634 534 553 ACTTTCTTCATTTCCACCTT n.d. 55 9684 9703 45
333635 535 554 TACTTTCTTCATTTCCACCT n.d. 72 9685 9704 46
489517 582 601 CCCAATTACACCACAAGCCA 68 72 9732 9751 226
436863 583 602 TCCCAATTACACCACAAGCC 83 86 9733 9752 227
590157 584 603 ATCCCAATTACACCACAAGC 64 62 9734 9753 228
590158 585 604 GATCCCAATTACACCACAAG 51 61 9735 9754 229
590159 586 605 CGATCCCAATTACACCACAA 60 55 9736 9755 230
590160 587 606 GCGATCCCAATTACACCACA 59 63 9737 9756 231
150463 588 607 GGCGATCCCAATTACACCAC 78 79 9738 9757 47
393363 589 608 GGGCGATCCCAATTACACCA 65 65 9739 9758 232
590161 590 609 TGGGCGATCCCAATTACACC 56 60 9740 9759 233
590162 591 610 TTGGGCGATCCCAATTACAC 48 51 9741 9760 234
489518 592 611 ATTGGGCGATCCCAATTACA 51 59 9742 9761 235
436864 593 612 TATTGGGCGATCCCAATTAC 39 41 9743 9762 236
590163 594 613 TTATTGGGCGATCCCAATTA 35 34 9744 9763 237
590164 595 614 TTTATTGGGCGATCCCAATT 42 44 9745 9764 238
590165 596 615 GTTTATTGGGCGATCCCAAT 58 61 9746 9765 239
393364 597 616 TGTTTATTGGGCGATCCCAA 60 69 9747 9766 240
590166 598 617 ATGTTTATTGGGCGATCCCA 51 54 9748 9767 241
590167 599 618 AATGTTTATTGGGCGATCCC 48 45 9749 9768 242
590168 600 619 GAATGTTTATTGGGCGATCC 60 65 9750 9769 243
150464 601 620 GGAATGTTTATTGGGCGATC 58 63 9751 9770 48
393365 607 626 TCCAAGGGAATGTTTATTGG 50 58 9757 9776 244
Table 3
Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence % inhibition with RTS3898 SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 CCGTCGCCCTTCAGCACGCA 80 973 992 21
590169 608 627 ATCCAAGGGAATGTTTATTG 63 9758 9777 245
590170 609 628 CATCCAAGGGAATGTTTATT 53 9759 9778 246
590171 610 629 ACATCCAAGGGAATGTTTAT 49 9760 9779 247
590172 611 630 TACATCCAAGGGAATGTTTA 56 9761 9780 248
489519 612 631 CTACATCCAAGGGAATGTTT 60 9762 9781 249
590173 613 632 ACTACATCCAAGGGAATGTT 61 9763 9782 250
590174 614 633 GACTACATCCAAGGGAATGT 65 9764 9783 251
393366 615 634 AGACTACATCCAAGGGAATG 58 9765 9784 252
590175 616 635 CAGACTACATCCAAGGGAAT 50 9766 9785 253
436865 617 636 TCAGACTACATCCAAGGGAA 69 9767 9786 254
590176 618 637 CTCAGACTACATCCAAGGGA 78 9768 9787 255
150465 619 638 CCTCAGACTACATCCAAGGG 91 9769 9788 49
590177 620 639 GCCTCAGACTACATCCAAGG 90 9770 9789 256
590178 621 640 GGCCTCAGACTACATCCAAG 92 9771 9790 257
489520 622 641 GGGCCTCAGACTACATCCAA 88 9772 9791 258
590179 643 662 CAGGATAACAGATGAGTTAA 79 9793 9812 259
590180 644 663 GCAGGATAACAGATGAGTTA 83 9794 9813 260
590181 645 664 AGCAGGATAACAGATGAGTT 81 9795 9814 261
590182 646 665 TAGCAGGATAACAGATGAGT 68 9796 9815 262
590183 647 666 CTAGCAGGATAACAGATGAG 74 9797 9816 263
590184 648 667 GCTAGCAGGATAACAGATGA 70 9798 9817 264
393370 649 668 AGCTAGCAGGATAACAGATG 61 9799 9818 265
590185 650 669 CAGCTAGCAGGATAACAGAT 78 9800 9819 266
590186 651 670 ACAGCTAGCAGGATAACAGA 72 9801 9820 267
489522 652 671 TACAGCTAGCAGGATAACAG 78 9802 9821 268
590187 653 672 CTACAGCTAGCAGGATAACA 88 9803 9822 269
378879 654 673 TCTACAGCTAGCAGGATAAC 86 9804 9823 270
590188 655 674 TTCTACAGCTAGCAGGATAA 85 9805 9824 271
393371 656 675 TTTCTACAGCTAGCAGGATA 84 9806 9825 272
436868 657 676 ATTTCTACAGCTAGCAGGAT 81 9807 9826 273
590189 658 677 CATTTCTACAGCTAGCAGGA 87 9808 9827 274
590190 659 678 ACATTTCTACAGCTAGCAGG 92 9809 9828 275
590191 660 679 TACATTTCTACAGCTAGCAG 88 9810 9829 276
590192 661 680 ATACATTTCTACAGCTAGCA 88 9811 9830 277
489523 662 681 GATACATTTCTACAGCTAGC 93 9812 9831 278
590193 683 702 ACAGTGTTTAATGTTTATCA 74 9833 9852 279
590194 684 703 TACAGTGTTTAATGTTTATC 64 9834 9853 280
590195 685 704 TTACAGTGTTTAATGTTTAT 56 9835 9854 281
590196 686 705 ATTACAGTGTTTAATGTTTA 50 9836 9855 282
590197 687 706 GATTACAGTGTTTAATGTTT 74 9837 9856 283
590198 688 707 AGATTACAGTGTTTAATGTT 37 9838 9857 284
590199 689 708 AAGATTACAGTGTTTAATGT 58 9839 9858 285
393375 690 709 TAAGATTACAGTGTTTAATG 58 9840 9859 286
590200 691 710 TTAAGATTACAGTGTTTAAT 46 9841 9860 287
436876 772 791 CAAATCTTCCAAGTGATCAT 36 9922 9941 288
590201 773 792 ACAAATCTTCCAAGTGATCA 33 9923 9942 289
590202 774 793 TACAAATCTTCCAAGTGATC 34 9924 9943 290
150474 775 794 ATACAAATCTTCCAAGTGAT 47 9925 9944 50
590203 776 795 TATACAAATCTTCCAAGTGA 29 9926 9945 291
393382 777 796 CTATACAAATCTTCCAAGTG 41 9927 9946 292
436877 778 797 ACTATACAAATCTTCCAAGT 45 9928 9947 293
590204 779 798 AACTATACAAATCTTCCAAG 27 9929 9948 294
590205 780 799 AAACTATACAAATCTTCCAA 33 9930 9949 295
590206 781 800 AAAACTATACAAATCTTCCA 35 9931 9950 296
489533 782 801 TAAAACTATACAAATCTTCC 26 9932 9951 297
590207 783 802 ATAAAACTATACAAATCTTC 19 9933 9952 298
590208 784 803 TATAAAACTATACAAATCTT 2 9934 9953 299
590209 785 804 TTATAAAACTATACAAATCT 7 9935 9954 300
590210 786 805 TTTATAAAACTATACAAATC 0 9936 9955 301
590211 787 806 TTTTATAAAACTATACAAAT 4 9937 9956 302
590212 788 807 GTTTTATAAAACTATACAAA 5 9938 9957 303
590213 789 808 AGTTTTATAAAACTATACAA 3 9939 9958 304
436878 790 809 GAGTTTTATAAAACTATACA 7 9940 9959 305
150475 791 810 TGAGTTTTATAAAACTATAC 28 9941 9960 51
489536 812 831 CATTGAAACAGACATTTTAA 28 9962 9981 306
150479 813 832 TCATTGAAACAGACATTTTA 36 9963 9982 52
393385 814 833 GTCATTGAAACAGACATTTT 50 9964 9983 307
590214 815 834 GGTCATTGAAACAGACATTT 45 9965 9984 308
590215 816 835 AGGTCATTGAAACAGACATT 47 9966 9985 309
590216 817 836 CAGGTCATTGAAACAGACAT 39 9967 9986 310
590217 818 837 ACAGGTCATTGAAACAGACA 44 9968 9987 311
590218 819 838 TACAGGTCATTGAAACAGAC 42 9969 9988 312
150480 820 839 ATACAGGTCATTGAAACAGA 46 9970 9989 53
393386 821 840 AATACAGGTCATTGAAACAG 36 9971 9990 313
489537 822 841 AAATACAGGTCATTGAAACA 12 9972 9991 314
590219 823 842 AAAATACAGGTCATTGAAAC 16 9973 9992 315
590220 824 843 CAAAATACAGGTCATTGAAA 21 9974 9993 316
Table 4
Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence % inhibition with RTS3898 SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
590251 n/a n/a CCTTGCCTTCTGCTCGAAAT 57 1013 1032 317
590252 n/a n/a AATAAAGTTGACCTCTTTTT 45 5479 5498 318
590253 n/a n/a CTCTGATATAAAAATCTTGT 54 8142 8161 319
590254 n/a n/a GCCCCGCGGCGGCCTCGGTC 38 1238 1257 320
590255 n/a n/a GCTATCGCCATTATTACAAG 38 7722 7741 321
590256 n/a n/a CTCAAATGTGAAAGTTGTCC 57 3414 3433 322
590257 n/a n/a GTTCTATATTCAATAAATGC 37 7925 7944 323
590258 n/a n/a AATTAAAGTTCCCAAATACA 0 7578 7597 324
590259 n/a n/a GATCATTACAAAAGTTAAGA 17 6150 6169 325
590260 n/a n/a CCTTCTCTGCCCTTGCAGCC 55 1685 1704 326
590261 n/a n/a ACCCAAATAACTATGTTGTA n.d. 9394 9413 327
590262 n/a n/a CCAGGTTTTAAACTTAACAA n.d. 8890 8909 328
590263 n/a n/a ATCTCAGGACTAAAATAAAC 44 3663 3682 329
590264 n/a n/a AAATAACTATGTTGTAGACC n.d. 9390 9409 330
590265 n/a n/a AAGAACCTTTTCCAGAAAAT 37 2449 2468 331
590266 n/a n/a GGAACAGAAACAAGTCTATG 25 7458 7477 332
590267 n/a n/a AGAAAGCTATCGCCATTATT 27 7727 7746 333
590268 n/a n/a TTCCCAAATACATTCTAAAA 7 7570 7589 334
590269 n/a n/a AACTGCTCTAGGCCTGTGTC 53 4787 4806 335
590270 n/a n/a AAATGGATCAAATCTGATCA 31 6595 6614 336
590271 n/a n/a GTAGGTGCACATCAAAATCA 58 1928 1947 337
590272 n/a n/a TCTGATATAAAAATCTTGTC 28 8141 8160 338
590273 n/a n/a ACCATATGAACTCCAGAAAG 45 7741 7760 339
590274 n/a n/a AACATCAAGGTAGTTCATGA 10 8379 8398 340
590275 n/a n/a GCAATTACAGAAATGGATCA 42 6605 6624 341
590276 n/a n/a TTTTAAGCATATTCCAAAGT 45 6331 6350 342
590277 n/a n/a TCAACCCCCAGCTCAAACAC 26 6174 6193 343
590278 n/a n/a AGAAAAATAACATTAATCCT n.d. 9541 9560 344
590279 n/a n/a AAGATTTTAAACACGGAATA 31 3085 3104 345
146145 165 184 GTCGCCCTTCAGCACGCACA 82 971 990 54
333611 167 186 CCGTCGCCCTTCAGCACGCA 81 973 992 21
590250 399 418 AGCAGTCACATTGCCCAAGT 75 8454 8473 346
489525 682 701 CAGTGTTTAATGTTTATCAG 69 9832 9851 347
436879 825 844 GCAAAATACAGGTCATTGAA 49 9975 9994 348
590221 826 845 GGCAAAATACAGGTCATTGA 54 9976 9995 349
590222 827 846 TGGCAAAATACAGGTCATTG 52 9977 9996 350
393387 828 847 CTGGCAAAATACAGGTCATT 51 9978 9997 351
590223 829 848 TCTGGCAAAATACAGGTCAT 47 9979 9998 352
590224 830 849 GTCTGGCAAAATACAGGTCA 44 9980 9999 353
590225 831 850 AGTCTGGCAAAATACAGGTC 50 9981 10000 354
489538 832 851 AAGTCTGGCAAAATACAGGT 38 9982 10001 355
590226 833 852 TAAGTCTGGCAAAATACAGG 33 9983 10002 356
590227 834 853 TTAAGTCTGGCAAAATACAG 20 9984 10003 357
150482 853 872 TTTAATACCCATCTGTGATT 29 10003 10022 55
590228 854 873 GTTTAATACCCATCTGTGAT 33 10004 10023 358
150483 855 874 AGTTTAATACCCATCTGTGA 44 10005 10024 56
590229 856 875 AAGTTTAATACCCATCTGTG 51 10006 10025 359
590230 857 876 CAAGTTTAATACCCATCTGT 42 10007 10026 360
590231 858 877 ACAAGTTTAATACCCATCTG 38 10008 10027 361
393389 859 878 GACAAGTTTAATACCCATCT 48 10009 10028 362
590232 860 879 TGACAAGTTTAATACCCATC 55 10010 10029 363
590233 861 880 CTGACAAGTTTAATACCCAT 49 10011 10030 364
489541 862 881 TCTGACAAGTTTAATACCCA 52 10012 10031 365
590234 863 882 TTCTGACAAGTTTAATACCC 39 10013 10032 366
590235 864 883 ATTCTGACAAGTTTAATACC 21 10014 10033 367
590236 865 884 AATTCTGACAAGTTTAATAC 4 10015 10034 368
393390 866 885 AAATTCTGACAAGTTTAATA 7 10016 10035 369
590237 867 886 GAAATTCTGACAAGTTTAAT 5 10017 10036 370
436881 868 887 AGAAATTCTGACAAGTTTAA 33 10018 10037 371
590238 869 888 AAGAAATTCTGACAAGTTTA 20 10019 10038 372
590239 891 910 TTATTCACAGGCTTGAATGA 23 10041 10060 373
489544 892 911 TTTATTCACAGGCTTGAATG 41 10042 10061 374
590240 893 912 TTTTATTCACAGGCTTGAAT 40 10043 10062 375
436884 894 913 TTTTTATTCACAGGCTTGAA 31 10044 10063 376
590241 895 914 GTTTTTATTCACAGGCTTGA 39 10045 10064 377
150488 896 915 GGTTTTTATTCACAGGCTTG 51 10046 10065 57
590242 897 916 GGGTTTTTATTCACAGGCTT 46 10047 10066 378
150489 898 917 AGGGTTTTTATTCACAGGCT 52 10048 10067 58
590243 899 918 CAGGGTTTTTATTCACAGGC 49 10049 10068 379
590244 900 919 ACAGGGTTTTTATTCACAGG 38 10050 10069 380
590245 901 920 TACAGGGTTTTTATTCACAG 34 10051 10070 381
150490 902 921 ATACAGGGTTTTTATTCACA 30 10052 10071 59
590246 903 922 CATACAGGGTTTTTATTCAC 34 10053 10072 382
150491 904 923 CCATACAGGGTTTTTATTCA 34 10054 10073 60
590247 905 924 GCCATACAGGGTTTTTATTC 34 10055 10074 383
590248 906 925 TGCCATACAGGGTTTTTATT 33 10056 10075 384
393393 907 926 GTGCCATACAGGGTTTTTAT 43 10057 10076 385
590249 908 927 AGTGCCATACAGGGTTTTTA 12 10058 10077 386
Table 5
Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence % inhibition with RTS3898 SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 CCGTCGCCCTTCAGCACGCA 86 973 992 21
590280 n/a n/a TGGAAAAACTCAAATGTGAA 51 3422 3441 387
590281 n/a n/a TTTCCCTTTCTTTTCCACAC 76 5738 5757 388
590282 n/a n/a TCTTTCCCTTTCTTTTCCAC 65 5740 5759 389
590283 n/a n/a TACCTTCTCTGCCCTTGCAG 74 1687 1706 390
590284 n/a n/a GCAAGGGCCAAGGCTGCTGC 75 6879 6898 391
590285 n/a n/a AAAGCTAAATTATGAATTAA 12 7592 7611 392
590286 n/a n/a CTAATGAAGGCTCAGTATGA 59 3193 3212 393
590287 n/a n/a GGAGTCAAATGCCAAAGAAC 60 2463 2482 394
590288 n/a n/a TGAATTAAAGTTCCCAAATA 5 7580 7599 395
590289 n/a n/a ACTTGGTGCAGGCAGAATAT 63 6916 6935 396
590290 n/a n/a CCTCTGATATAAAAATCTTG 67 8143 8162 397
590291 n/a n/a AAAGTTGGAGAGAGTTTCTG 8 4940 4959 398
590292 n/a n/a TCTCTGCCCTTGCAGCCCAA 80 1682 1701 399
590293 n/a n/a TTACTTGGTGCAGGCAGAAT 56 6918 6937 400
590294 n/a n/a AATGGAGTCAAATGCCAAAG 66 2466 2485 401
590295 n/a n/a TATGAATTAAAGTTCCCAAA 20 7582 7601 402
590296 n/a n/a AGTTCTATATTCAATAAATG 21 7926 7945 403
590297 n/a n/a TACAAGTAGTATACCATATG 33 7753 7772 404
590298 n/a n/a TAGCCTTAGAGCTGTACAAA 70 1553 1572 405
590299 n/a n/a GTCCCCATTTGTCAATTCCT 71 7882 7901 406
590300 n/a n/a AACCTGCCTACTGGCAGAGC 59 2095 2114 407
590301 n/a n/a CTTGTTCCCACACTCAATGC 56 4747 4766 408
590302 n/a n/a ACAAGTCATGATAACCTGCA 61 8952 8971 409
590303 n/a n/a TGTTTTCCAAACTCAGATCT 52 8796 8815 410
590304 n/a n/a AGAACCTCATAATATTAGAA 9 9557 9576 411
590305 n/a n/a GGTTTTAAACTTAACAAAAT 1 8887 8906 412
590306 n/a n/a CTCTGGTGTATTTTTAGTAA 65 1831 1850 413
590307 n/a n/a TATCTCTGCATATCTGGAAA 71 3034 3053 414
590308 n/a n/a CAGCCTTTTTAACCCAAAAG 68 4407 4426 415
590309 n/a n/a TGGAATGCTCCACTATCCAA 57 3012 3031 416
590310 n/a n/a CGTTCAGAAGTTTGTCTCTG 67 2126 2145 417
590311 n/a n/a CTGCTCAGGGAAGGTGGAAA 53 2922 2941 418
590312 n/a n/a TCAAGAGAAGCTAGGAAAAC 50 3154 3173 419
590313 n/a n/a TCCCTTTCTTTTCCACACCT 74 5736 5755 420
590314 n/a n/a TTGTTCCCACACTCAATGCA 56 4746 4765 421
590315 n/a n/a TCACCAGCACAGCACAACAC 58 5076 5095 422
590316 n/a n/a CCTGGGATCATTACAAAAGT 42 6155 6174 423
590317 n/a n/a AGTAGTATACCATATGAACT 35 7749 7768 424
590318 n/a n/a TCTAATATGGTCAAATGTAA 27 8779 8798 425
590319 n/a n/a GGTTGGGCTCTGGTGTATTT 64 1838 1857 426
590320 n/a n/a TGCCCTTTACTTGGTGCAGG 56 6924 6943 427
590321 n/a n/a AGAGAGTTTCTGAACAAAGA 24 4932 4951 428
590322 n/a n/a GAATTTCAGCAATTACAGAA 33 6613 6632 429
590323 n/a n/a ACAAGTTAAACAAGTCATGA 9 8961 8980 430
590324 n/a n/a TGTGCCCTTTACTTGGTGCA 47 6926 6945 431
590325 n/a n/a TTAGGAGGAGGAAAAGGACC 23 1719 1738 432
590326 n/a n/a ACTGGCAGAGCAATTTTAAA 25 2086 2105 433
590327 n/a n/a AGTCAAATGCCAAAGAACCT 58 2461 2480 434
590328 n/a n/a AAGCATCAGATGGATTAGGG 17 8411 8430 435
590329 n/a n/a GTCCGCGGGACCCTCAGGAA 54 1414 1433 436
590330 n/a n/a CAATTACAGAAATGGATCAA 42 6604 6623 437
590331 n/a n/a GCTGTCAAGTAATCACTACC 27 9606 9625 438
590332 n/a n/a AGTGCAAAGTTGGAGAGAGT 33 4945 4964 439
590333 n/a n/a ACTTGCTTCCAATCCCAAAT 78 6436 6455 440
590334 n/a n/a AACTCAAATGTGAAAGTTGT 51 3416 3435 441
590335 n/a n/a TTTTAGTAAGATCTTCAAAT 14 1820 1839 442
590336 n/a n/a ATTTCAGCAATTACAGAAAT 27 6611 6630 443
590337 n/a n/a TTAAGTGTCCCCATTTGTCA 56 7888 7907 444
590338 n/a n/a TTAGCAACCTGCCTACTGGC 57 2100 2119 445
590339 n/a n/a TATTACAAGAGTTAAGCATC 41 7711 7730 446
590340 n/a n/a ATGTTGAATATACATGTACA 36 4545 4564 447
590341 n/a n/a TTTGTCTCTGACCATCTTAG 74 2116 2135 448
590342 n/a n/a TTTTCCACCAGTTGGTAACT 59 2253 2272 449
590343 n/a n/a CAACAGCTTCCCACAAGTTA 28 8973 8992 450
590344 n/a n/a CAAATGTGAAAGTTGTCCCT 62 3412 3431 451
590345 n/a n/a GCTACCTTCTCTGCCCTTGC 73 1689 1708 452
590346 n/a n/a TCTTAGCAGAACAGTGTTCT 51 8743 8762 453
590347 n/a n/a ATACATTCTAAAAAGAAACA 41 7563 7582 454
590348 n/a n/a GCACATATTTACAAGTAGTA 58 7762 7781 455
590349 n/a n/a GGGTCACCAGCACAGCACAA 35 5079 5098 456
590350 n/a n/a GTGCAAGGGCCAAGGCTGCT 66 6881 6900 457
590351 n/a n/a ACCTGGGTTCATGCATGGAT 72 2902 2921 458
590352 n/a n/a ATCACTATTTGAAACTAAAT 0 6569 6588 459
590353 n/a n/a ATACAATAAAGTTGACCTCT 64 5483 5502 460
590354 n/a n/a TTTTAAACTTAACAAAATGT 10 8885 8904 461
590355 n/a n/a CTCCCCGCGCTCCCGCCACG 15 1268 1287 462
590356 n/a n/a GAAGGCTCAGTATGAAGAGA 65 3188 3207 463
Table 6
Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence % inhibition with RTS3898 SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 CCGTCGCCCTTCAGCACGCA 87 973 992 21
590357 n/a n/a AGAAAACAGCTGATTTACCT 40 4915 4934 464
590358 n/a n/a CCACAAGTTAAACAAGTCAT n.d. 8963 8982 465
590359 n/a n/a CAAATTTGCAAACAAGTAGC 61 8331 8350 466
590360 n/a n/a CCTAATTTGAACTGCAAGTA n.d. 8665 8684 467
590361 n/a n/a AAAAAACTCATCTCCCCAGC 70 6969 6988 468
590362 n/a n/a AGGCTCAGTATGAAGAGATC 67 3186 3205 469
590363 n/a n/a TGTTATCAAGAGCACAGGGC 58 3383 3402 470
590364 n/a n/a CCTCAAAAGGGAGATGGTAA 41 4768 4787 471
590365 n/a n/a AGTATGGGTCACCAGCACAG 71 5084 5103 472
590366 n/a n/a TCACAATCTAGTGCAGTTAC 70 5584 5603 473
590367 n/a n/a CAAGTGAGAAACCCAATCCT n.d. 8856 8875 474
590368 n/a n/a AGAAAATCTGGCCATTTTAA n.d. 8832 8851 475
590369 n/a n/a ACAGGTAATGGTGCTCCGTG 71 3716 3735 476
590370 n/a n/a TGAAAGGCTTTCAGAAAACA 44 8102 8121 477
590371 n/a n/a CAGGCAAGTTACAGGAAGCA 64 6687 6706 478
590372 n/a n/a CAGCAAGCTGCTTAACTGCT 65 4800 4819 479
590373 n/a n/a TGTTGCAAAGACATTACCTT n.d. 9455 9474 480
590374 n/a n/a GAAACTAAATTAGCAAGATG 43 6559 6578 481
590375 n/a n/a TCAAGAGCACAGGGCCAAAA 60 3378 3397 482
590376 n/a n/a AGGAGGAGGAAAAGGACCTC 53 1717 1736 483
590377 n/a n/a CCTCAGCCTTTTTAACCCAA 73 4410 4429 484
590378 n/a n/a CTATGTTGTAGACCACCACA n.d. 9384 9403 485
590379 n/a n/a CTCCGTGGCTACATACAGAA 66 3703 3722 486
590380 n/a n/a TTTATCTGGATCTTTAGAAA n.d. 8642 8661 487
590381 n/a n/a AAAAAAAGGAAAGTGAAAGT n.d. 9279 9298 488
590382 n/a n/a GGTTCATGCATGGATTCTCA 76 2897 2916 489
590383 n/a n/a CTGCAAAGTGTCACACAAAC 76 1630 1649 490
590384 n/a n/a TTCAGAAGTACCAAAGGGTA 53 8227 8246 491
590385 n/a n/a TAAAAGCATTCCAGCATTTG 44 7848 7867 492
590386 n/a n/a TAGTATACCATATGAACTCC 73 7747 7766 493
590387 n/a n/a TGCATATCTGGAAAGCTGGA 59 3028 3047 494
590388 n/a n/a CTTAACTGCTCTAGGCCTGT 54 4790 4809 495
590389 n/a n/a AGGCACCGACCGGGCGGCAC 21 1155 1174 496
590390 n/a n/a TGCAAAGTTGGAGAGAGTTT 32 4943 4962 497
590391 n/a n/a TCCTCAAAAGGGAGATGGTA 37 4769 4788 498
590392 n/a n/a AGTATACCATATGAACTCCA 76 7746 7765 499
590393 n/a n/a TATTTGTACATGTTGAATAT 2 4554 4573 500
590394 n/a n/a ACCCAAAAGGTGTATGTCTC 71 4396 4415 501
590395 n/a n/a CTTTGGAAAAAAAGGAAAGT n.d. 9285 9304 502
590396 n/a n/a GGGAGAAAGGCAGGCAAGTT 20 6697 6716 503
590397 n/a n/a TTAAGCCCAGGAAGTAAAAG 9 7862 7881 504
590398 n/a n/a AGACATTACCTTTAAACATT n.d. 9447 9466 505
590399 n/a n/a GTGGCTTAAGAAATGCTCCG 26 2050 2069 506
590400 n/a n/a GTGAGAAGGGAACAGAAACA 48 7466 7485 507
590401 n/a n/a AAAAGCATCAGATGGATTAG 21 8413 8432 508
590402 n/a n/a TTCCACCAGTTGGTAACTTC 78 2251 2270 509
590403 n/a n/a TTTTTAGTAAGATCTTCAAA 15 1821 1840 510
590404 n/a n/a ATCTGTGTCCAAATCCCAGG 59 4847 4866 511
590405 n/a n/a TAAGATCTTCAAATAAGCTA 33 1814 1833 512
590406 n/a n/a ATCAACTCTTTCCCTTTCTT 63 5746 5765 513
590407 n/a n/a TGTGTCCTCAAAAGGGAGAT 37 4773 4792 514
590408 n/a n/a TACCTCCTCCCAACAATACC n.d. 9590 9609 515
590409 n/a n/a TTCTGCTTTACAACTATGGC n.d. 9133 9152 516
590410 n/a n/a GTACATGTTGAATATACATG 35 4549 4568 517
590411 n/a n/a TTTGTGGCTAATCTTAAGGT 47 5699 5718 518
590412 n/a n/a TCCTGCCTCAGCCTTTTTAA 34 4415 4434 519
590413 n/a n/a CGGTGTCCGCGGGACCCTCA 59 1418 1437 520
590414 n/a n/a GAAATGGATCAAATCTGATC 50 6596 6615 521
590415 n/a n/a GGTAGTTCATGAGCTAAATT 31 8371 8390 522
590416 n/a n/a AATGGAGTCTCGACTAGTTT 62 8072 8091 523
590417 n/a n/a CAAGTATGGGTCACCAGCAC 57 5086 5105 524
590418 n/a n/a GGTGTCCGCGGGACCCTCAG 40 1417 1436 525
590419 n/a n/a CGCCACGCGCAGGCCCAGCC 37 1255 1274 526
590420 n/a n/a TCTAGGCCTGTGTCCTCAAA 75 4781 4800 527
590421 n/a n/a ACTGTCCTGGGCTAATGAAG 36 3204 3223 528
590422 n/a n/a AAGCATCTTGTTACCTCTCT 52 7698 7717 529
590423 n/a n/a GCCCAGGAAGTAAAAGCATT 38 7858 7877 530
590424 n/a n/a GTAAGATCTTCAAATAAGCT 46 1815 1834 531
590425 n/a n/a AAAGGGAGATGGTAATCTTG 48 4763 4782 532
590426 n/a n/a GCCAAGGCTGCTGCCTTACA 66 6873 6892 533
590427 n/a n/a CAGACTAACTGTTCCTGTCC 43 2363 2382 534
590428 n/a n/a TTTGTCAATTCCTTTAAGCC 39 7875 7894 535
590429 n/a n/a ACTACCTCCTCCCAACAATA n.d. 9592 9611 536
590430 n/a n/a TACCTCTCTTCATCCTTTGG 50 7687 7706 537
590431 n/a n/a ACTGCTCTAGGCCTGTGTCC 59 4786 4805 538
590432 n/a n/a CCTCCTCCCAACAATACCCA n.d. 9588 9607 539
590433 n/a n/a GGCAGGCAAGTTACAGGAAG 42 6689 6708 540
Table 7
Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence % inhibition with RTS3898 SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
592596 2 21 TCGCCCACTCTGGCCCCAAA 86 808 827 541
592597 4 23 CCTCGCCCACTCTGGCCCCA 89 810 829 542
592598 6 25 CGCCTCGCCCACTCTGGCCC 56 812 831 543
592599 8 27 CGCGCCTCGCCCACTCTGGC 68 814 833 544
592600 10 29 TCCGCGCCTCGCCCACTCTG 64 816 835 545
592601 12 31 CCTCCGCGCCTCGCCCACTC 83 818 837 546
592602 14 33 GACCTCCGCGCCTCGCCCAC 89 820 839 547
592603 16 35 CAGACCTCCGCGCCTCGCCC 88 822 841 548
592604 18 37 GCCAGACCTCCGCGCCTCGC 79 824 843 549
592605 20 39 AGGCCAGACCTCCGCGCCTC 89 826 845 550
592606 22 41 ATAGGCCAGACCTCCGCGCC 88 828 847 551
592607 24 43 TTATAGGCCAGACCTCCGCG 75 830 849 552
592608 26 45 CTTTATAGGCCAGACCTCCG 21 832 851 553
592609 28 47 TACTTTATAGGCCAGACCTC 76 834 853 554
592610 30 49 ACTACTTTATAGGCCAGACC 60 836 855 555
592611 32 51 CGACTACTTTATAGGCCAGA 0 838 857 556
592612 34 53 CGCGACTACTTTATAGGCCA 0 840 859 557
592613 36 55 TCCGCGACTACTTTATAGGC 0 842 861 558
592614 38 57 TCTCCGCGACTACTTTATAG 7 844 863 559
592615 40 59 CGTCTCCGCGACTACTTTAT 0 846 865 560
592616 42 61 CCCGTCTCCGCGACTACTTT 0 848 867 561
592617 44 63 ACCCCGTCTCCGCGACTACT 0 850 869 562
592618 46 65 GCACCCCGTCTCCGCGACTA 0 852 871 563
592619 48 67 CAGCACCCCGTCTCCGCGAC 0 854 873 564
592620 50 69 ACCAGCACCCCGTCTCCGCG 0 856 875 565
592621 52 71 AAACCAGCACCCCGTCTCCG 2 858 877 566
592622 54 73 GCAAACCAGCACCCCGTCTC 4 860 879 567
592623 56 75 ACGCAAACCAGCACCCCGTC 0 862 881 568
592624 58 77 CGACGCAAACCAGCACCCCG 0 864 883 569
592625 60 79 TACGACGCAAACCAGCACCC 0 866 885 570
592626 62 81 ACTACGACGCAAACCAGCAC 0 868 887 571
592627 64 83 AGACTACGACGCAAACCAGC 1 870 889 572
592628 66 85 GGAGACTACGACGCAAACCA 0 872 891 573
592629 68 87 CAGGAGACTACGACGCAAAC 0 874 893 574
592630 70 89 TGCAGGAGACTACGACGCAA 0 876 895 575
592631 72 91 GCTGCAGGAGACTACGACGC 1 878 897 576
150511 74 93 ACGCTGCAGGAGACTACGAC 0 880 899 61
592632 90 109 GCAACGGAAACCCCAGACGC 2 896 915 577
592633 92 111 CTGCAACGGAAACCCCAGAC 0 898 917 578
592634 94 113 GACTGCAACGGAAACCCCAG 0 900 919 579
345715 95 114 GGACTGCAACGGAAACCCCA 0 901 920 580
592635 96 115 AGGACTGCAACGGAAACCCC 1 902 921 581
150437 98 117 CGAGGACTGCAACGGAAACC 6 904 923 62
592636 100 119 TCCGAGGACTGCAACGGAAA 6 906 925 582
592637 102 121 GTTCCGAGGACTGCAACGGA 12 908 927 583
592638 104 123 TGGTTCCGAGGACTGCAACG 0 910 929 584
592639 106 125 CCTGGTTCCGAGGACTGCAA 32 912 931 585
592640 108 127 GTCCTGGTTCCGAGGACTGC 68 914 933 586
345717 110 129 AGGTCCTGGTTCCGAGGACT 65 916 935 587
592641 112 131 CGAGGTCCTGGTTCCGAGGA 84 918 937 588
592642 114 133 GCCGAGGTCCTGGTTCCGAG 86 920 939 589
592643 116 135 ACGCCGAGGTCCTGGTTCCG 78 922 941 590
592644 118 137 CCACGCCGAGGTCCTGGTTC 79 924 943 591
345719 120 139 GGCCACGCCGAGGTCCTGGT 63 926 945 592
150441 122 141 TAGGCCACGCCGAGGTCCTG 81 928 947 63
592645 124 143 GCTAGGCCACGCCGAGGTCC 63 930 949 593
592646 126 145 TCGCTAGGCCACGCCGAGGT 56 932 951 594
592647 128 147 ACTCGCTAGGCCACGCCGAG 48 934 953 595
345721 130 149 TAACTCGCTAGGCCACGCCG 63 936 955 596
592648 132 151 CATAACTCGCTAGGCCACGC 38 938 957 597
592649 134 153 GCCATAACTCGCTAGGCCAC 52 940 959 598
592650 136 155 TCGCCATAACTCGCTAGGCC 59 942 961 599
592651 138 157 CGTCGCCATAACTCGCTAGG 55 944 963 600
592652 156 175 CAGCACGCACACGGCCTTCG 56 962 981 601
333605 158 177 TTCAGCACGCACACGGCCTT 85 964 983 64
333606 160 179 CCTTCAGCACGCACACGGCC 82 966 985 65
146144 162 181 GCCCTTCAGCACGCACACGG 58 968 987 66
333609 164 183 TCGCCCTTCAGCACGCACAC 79 970 989 67
146145 165 184 GTCGCCCTTCAGCACGCACA 86 971 990 54
333610 166 185 CGTCGCCCTTCAGCACGCAC 79 972 991 68
333611 167 186 CCGTCGCCCTTCAGCACGCA 83 973 992 21
592653 168 187 GCCGTCGCCCTTCAGCACGC 79 974 993 602
592654 169 188 GGCCGTCGCCCTTCAGCACG 72 975 994 603
592655 170 189 GGGCCGTCGCCCTTCAGCAC 51 976 995 604
592656 172 191 CTGGGCCGTCGCCCTTCAGC 45 978 997 605
592657 174 193 CACTGGGCCGTCGCCCTTCA 33 980 999 606
592658 176 195 TGCACTGGGCCGTCGCCCTT 72 982 1001 607
592659 178 197 CCTGCACTGGGCCGTCGCCC 76 984 1003 608
Table 8
Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence % inhibition with RTS3898 SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 CCGTCGCCCTTCAGCACGCA 87 973 992 21
150443 180 199 GCCCTGCACTGGGCCGTCGC 65 986 1005 69
592660 182 201 ATGCCCTGCACTGGGCCGTC 52 988 1007 609
592661 184 203 TGATGCCCTGCACTGGGCCG 30 990 1009 610
592662 186 205 GATGATGCCCTGCACTGGGC 38 992 1011 611
592663 188 207 TTGATGATGCCCTGCACTGG 36 994 1013 612
150444 190 209 AATTGATGATGCCCTGCACT 48 996 1015 70
592664 192 211 GAAATTGATGATGCCCTGCA 35 998 1017 15
592665 194 213 TCGAAATTGATGATGCCCTG 40 1000 1019 614
592666 196 215 GCTCGAAATTGATGATGCCC 68 1002 1021 615
592667 198 217 CTGCTCGAAATTGATGATGC 63 1004 1023 616
592668 200 219 TTCTGCTCGAAATTGATGAT 47 1006 1025 617
592669 239 258 TTAATGCTTCCCCACACCTT 68 4993 5012 618
592670 241 260 CTTTAATGCTTCCCCACACC 71 4995 5014 619
592671 243 262 TCCTTTAATGCTTCCCCACA 69 4997 5016 620
150448 245 264 AGTCCTTTAATGCTTCCCCA 76 4999 5018 71
592672 247 266 TCAGTCCTTTAATGCTTCCC 75 5001 5020 621
592673 249 268 AGTCAGTCCTTTAATGCTTC 58 5003 5022 622
592674 251 270 TCAGTCAGTCCTTTAATGCT 46 5005 5024 623
592675 253 272 CTTCAGTCAGTCCTTTAATG 41 5007 5026 624
592676 255 274 GCCTTCAGTCAGTCCTTTAA 62 5009 5028 625
150449 257 276 AGGCCTTCAGTCAGTCCTTT 65 5011 5030 72
592677 259 278 GCAGGCCTTCAGTCAGTCCT 69 5013 5032 626
592678 261 280 ATGCAGGCCTTCAGTCAGTC 65 5015 5034 627
592679 263 282 CCATGCAGGCCTTCAGTCAG 53 5017 5036 628
592680 277 296 CATGAACATGGAATCCATGC 63 5031 5050 629
592681 279 298 CTCATGAACATGGAATCCAT 60 5033 5052 630
592682 281 300 AACTCATGAACATGGAATCC 56 5035 5054 631
592683 284 303 CCAAACTCATGAACATGGAA 60 5038 5057 632
592684 286 305 CTCCAAACTCATGAACATGG 69 5040 5059 633
592685 288 307 ATCTCCAAACTCATGAACAT 40 5042 5061 634
592686 290 309 TTATCTCCAAACTCATGAAC 35 5044 5063 635
592687 292 311 TATTATCTCCAAACTCATGA 26 5046 5065 636
592688 294 313 TGTATTATCTCCAAACTCAT 41 5048 5067 637
150452 296 315 GCTGTATTATCTCCAAACTC 51 5050 5069 73
592689 298 317 CTGCTGTATTATCTCCAAAC 43 5052 5071 638
592690 300 319 GCCTGCTGTATTATCTCCAA 37 n/a n/a 639
592691 302 321 CAGCCTGCTGTATTATCTCC 33 n/a n/a 640
592692 304 323 TACAGCCTGCTGTATTATCT 27 n/a n/a 641
592693 306 325 GGTACAGCCTGCTGTATTAT 21 n/a n/a 642
592694 308 327 CTGGTACAGCCTGCTGTATT 23 n/a n/a 643
592695 310 329 CACTGGTACAGCCTGCTGTA 46 n/a n/a 644
592696 312 331 TGCACTGGTACAGCCTGCTG 40 n/a n/a 645
592697 314 333 CCTGCACTGGTACAGCCTGC 62 n/a n/a 646
592698 340 359 TTCTGGATAGAGGATTAAAG 41 7656 7675 647
592699 342 361 TTTTCTGGATAGAGGATTAA 29 7658 7677 648
592700 344 363 TGTTTTCTGGATAGAGGATT 51 7660 7679 649
592701 346 365 CGTGTTTTCTGGATAGAGGA 64 7662 7681 650
592702 348 367 ACCGTGTTTTCTGGATAGAG 44 7664 7683 651
592703 350 369 CCACCGTGTTTTCTGGATAG 62 7666 7685 652
592704 352 371 GCCCACCGTGTTTTCTGGAT 60 7668 7687 653
592705 354 373 TGGCCCACCGTGTTTTCTGG 62 7670 7689 654
592706 356 375 TTTGGCCCACCGTGTTTTCT 49 7672 7691 655
592707 358 377 CCTTTGGCCCACCGTGTTTT 52 7674 7693 656
592708 382 401 AGTCTCCAACATGCCTCTCT 53 n/a n/a 657
592709 384 403 CAAGTCTCCAACATGCCTCT 39 n/a n/a 658
489501 386 405 CCCAAGTCTCCAACATGCCT 75 8441 8460 659
150454 388 407 TGCCCAAGTCTCCAACATGC 86 8443 8462 74
592710 390 409 ATTGCCCAAGTCTCCAACAT 71 8445 8464 660
592711 392 411 ACATTGCCCAAGTCTCCAAC 64 8447 8466 661
592712 394 413 TCACATTGCCCAAGTCTCCA 59 8449 8468 662
489502 396 415 AGTCACATTGCCCAAGTCTC 70 8451 8470 663
592713 398 417 GCAGTCACATTGCCCAAGTC 70 8453 8472 664
592714 400 419 CAGCAGTCACATTGCCCAAG 84 8455 8474 665
592715 402 421 GTCAGCAGTCACATTGCCCA 83 8457 8476 666
592716 404 423 TTGTCAGCAGTCACATTGCC 59 8459 8478 667
489503 406 425 CTTTGTCAGCAGTCACATTG 47 8461 8480 668
592717 408 427 ATCTTTGTCAGCAGTCACAT 54 8463 8482 669
592718 410 429 CCATCTTTGTCAGCAGTCAC 76 8465 8484 670
592719 412 431 CACCATCTTTGTCAGCAGTC 75 8467 8486 671
592720 414 433 CACACCATCTTTGTCAGCAG 66 8469 8488 672
489504 416 435 GCCACACCATCTTTGTCAGC 60 8471 8490 673
592721 418 437 CGGCCACACCATCTTTGTCA 62 8473 8492 674
592722 420 439 ATCGGCCACACCATCTTTGT 57 8475 8494 675
592723 422 441 ACATCGGCCACACCATCTTT 54 8477 8496 676
150458 424 443 ACACATCGGCCACACCATCT 77 8479 8498 75
489505 426 445 AGACACATCGGCCACACCAT 84 8481 8500 677
592724 428 447 ATAGACACATCGGCCACACC 66 8483 8502 678
Table 9
Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence % inhibition with RTS3898 % inhibition with HTS90 SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 CCGTCGCCCTTCAGCACGCA 87 n.d. 973 992 21
592725 430 449 CAATAGACACATCGGCCACA 67 65 8485 8504 679
592726 432 451 TTCAATAGACACATCGGCCA 62 66 8487 8506 680
592727 434 453 TCTTCAATAGACACATCGGC 56 49 8489 8508 681
489506 436 455 AATCTTCAATAGACACATCG 25 28 8491 8510 682
592728 438 457 AGAATCTTCAATAGACACAT 12 0 8493 8512 683
592729 440 459 ACAGAATCTTCAATAGACAC 24 16 8495 8514 684
592730 442 461 TCACAGAATCTTCAATAGAC 34 24 8497 8516 685
592731 444 463 GATCACAGAATCTTCAATAG 15 14 8499 8518 686
489507 446 465 GAGATCACAGAATCTTCAAT 42 46 8501 8520 687
592732 448 467 GTGAGATCACAGAATCTTCA n.d. 58 8503 8522 688
592733 450 469 GAGTGAGATCACAGAATCTT n.d. 45 8505 8524 689
592734 452 471 GAGAGTGAGATCACAGAATC n.d. 48 8507 8526 690
592735 454 473 CTGAGAGTGAGATCACAGAA n.d. 66 8509 8528 691
489508 456 475 TCCTGAGAGTGAGATCACAG n.d. 60 8511 8530 692
333619 458 477 TCTCCTGAGAGTGAGATCAC n.d. 65 8513 8532 76
592736 460 479 GGTCTCCTGAGAGTGAGATC n.d. 40 8515 8534 693
592737 462 481 ATGGTCTCCTGAGAGTGAGA n.d. 37 8517 8536 694
592738 464 483 CAATGGTCTCCTGAGAGTGA n.d. 41 8519 8538 695
489509 466 485 TGCAATGGTCTCCTGAGAGT n.d. 43 8521 8540 696
592739 468 487 GATGCAATGGTCTCCTGAGA n.d. 16 8523 8542 697
592740 470 489 ATGATGCAATGGTCTCCTGA n.d. 6 8525 8544 698
592741 472 491 CAATGATGCAATGGTCTCCT n.d. 0 8527 8546 699
592742 474 493 GCCAATGATGCAATGGTCTC n.d. 25 8529 8548 700
489510 476 495 CGGCCAATGATGCAATGGTC n.d. 32 8531 8550 701
592743 478 497 TGCGGCCAATGATGCAATGG n.d. 14 8533 8552 702
592744 480 499 TGTGCGGCCAATGATGCAAT n.d. 0 8535 8554 703
592745 482 501 AGTGTGCGGCCAATGATGCA n.d. 7 8537 8556 704
592746 484 503 CCAGTGTGCGGCCAATGATG n.d. 25 8539 8558 705
489511 486 505 CACCAGTGTGCGGCCAATGA n.d. 28 8541 8560 706
150460 488 507 ACCACCAGTGTGCGGCCAAT n.d. 52 8543 8562 77
592747 490 509 GGACCACCAGTGTGCGGCCA n.d. 44 n/a n/a 707
592748 492 511 ATGGACCACCAGTGTGCGGC n.d. 40 n/a n/a 708
150462 494 513 TCATGGACCACCAGTGTGCG n.d. 39 n/a n/a 78
592749 496 515 TTTCATGGACCACCAGTGTG n.d. 35 n/a n/a 709
592750 498 517 TTTTTCATGGACCACCAGTG n.d. 23 n/a n/a 710
592751 500 519 GCTTTTTCATGGACCACCAG n.d. 63 n/a n/a 711
333636 536 555 GTACTTTCTTCATTTCCACC n.d. 65 9686 9705 79
333638 538 557 TTGTACTTTCTTCATTTCCA n.d. 66 9688 9707 80
333640 540 559 CTTTGTACTTTCTTCATTTC n.d. 37 9690 9709 81
592752 543 562 TGTCTTTGTACTTTCTTCAT n.d. 63 9693 9712 712
592753 545 564 CCTGTCTTTGTACTTTCTTC n.d. 74 9695 9714 713
592754 547 566 TTCCTGTCTTTGTACTTTCT n.d. 72 9697 9716 714
592755 549 568 GTTTCCTGTCTTTGTACTTT n.d. 57 9699 9718 715
592756 568 587 AAGCCAAACGACTTCCAGCG 72 66 9718 9737 716
592757 570 589 ACAAGCCAAACGACTTCCAG 72 74 9720 9739 717
489516 572 591 CCACAAGCCAAACGACTTCC 85 82 9722 9741 718
592758 574 593 CACCACAAGCCAAACGACTT 72 73 9724 9743 719
592759 576 595 TACACCACAAGCCAAACGAC 74 68 9726 9745 720
592760 578 597 ATTACACCACAAGCCAAACG 67 61 9728 9747 721
592761 580 599 CAATTACACCACAAGCCAAA 64 56 9730 9749 722
150466 640 659 GATAACAGATGAGTTAAGGG 66 65 9790 9809 82
489521 642 661 AGGATAACAGATGAGTTAAG 79 78 9792 9811 723
592762 663 682 GGATACATTTCTACAGCTAG 91 87 9813 9832 724
592763 665 684 CAGGATACATTTCTACAGCT 92 89 9815 9834 725
592764 667 686 ATCAGGATACATTTCTACAG 88 83 9817 9836 726
592765 669 688 TTATCAGGATACATTTCTAC 77 72 9819 9838 727
592766 671 690 GTTTATCAGGATACATTTCT 90 89 9821 9840 728
592767 673 692 ATGTTTATCAGGATACATTT 82 76 9823 9842 729
592768 675 694 TAATGTTTATCAGGATACAT 80 79 9825 9844 730
592769 677 696 TTTAATGTTTATCAGGATAC 82 78 9827 9846 731
592770 679 698 TGTTTAATGTTTATCAGGAT 79 75 9829 9848 732
592771 681 700 AGTGTTTAATGTTTATCAGG 84 81 9831 9850 733
489526 692 711 TTTAAGATTACAGTGTTTAA 36 38 9842 9861 734
592772 694 713 CTTTTAAGATTACAGTGTTT 46 47 9844 9863 735
592773 696 715 CACTTTTAAGATTACAGTGT 39 42 9846 9865 736
592774 698 717 TACACTTTTAAGATTACAGT 21 24 9848 9867 737
592775 700 719 ATTACACTTTTAAGATTACA 3 0 9850 9869 738
489527 702 721 CAATTACACTTTTAAGATTA 0 0 9852 9871 739
150467 704 723 CACAATTACACTTTTAAGAT 58 73 9854 9873 83
592776 706 725 CACACAATTACACTTTTAAG 29 5 9856 9875 740
592777 708 727 GTCACACAATTACACTTTTA 59 49 9858 9877 741
592778 710 729 AAGTCACACAATTACACTTT 40 34 9860 9879 742
489528 712 731 AAAAGTCACACAATTACACT 31 27 9862 9881 743
592779 714 733 GAAAAAGTCACACAATTACA 21 7 9864 9883 744
592780 716 735 CTGAAAAAGTCACACAATTA 18 13 9866 9885 745
592781 718 737 CTCTGAAAAAGTCACACAAT 32 26 9868 9887 746
592782 720 739 AACTCTGAAAAAGTCACACA 35 20 9870 9889 747
Table 10
Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence % inhibition with RTS3898 SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 CCGTCGCCCTTCAGCACGCA 74 973 992 21
489529 722 741 GCAACTCTGAAAAAGTCACA 41 9872 9891 748
592783 724 743 AAGCAACTCTGAAAAAGTCA 34 9874 9893 749
592784 727 746 TTAAAGCAACTCTGAAAAAG 4 9877 9896 750
592785 729 748 CTTTAAAGCAACTCTGAAAA 36 9879 9898 751
592786 731 750 TACTTTAAAGCAACTCTGAA 28 9881 9900 752
592787 733 752 GGTACTTTAAAGCAACTCTG 48 9883 9902 753
592788 735 754 CAGGTACTTTAAAGCAACTC 38 9885 9904 754
592789 737 756 TACAGGTACTTTAAAGCAAC 20 9887 9906 755
592790 739 758 ACTACAGGTACTTTAAAGCA 26 9889 9908 756
592791 741 760 TCACTACAGGTACTTTAAAG 34 9891 9910 757
592792 743 762 TCTCACTACAGGTACTTTAA 50 9893 9912 758
592793 745 764 TTTCTCACTACAGGTACTTT 36 9895 9914 759
592794 747 766 AGTTTCTCACTACAGGTACT 53 9897 9916 760
592795 749 768 TCAGTTTCTCACTACAGGTA 37 9899 9918 761
150470 751 770 AATCAGTTTCTCACTACAGG 30 9901 9920 84
592796 753 772 TAAATCAGTTTCTCACTACA 21 9903 9922 762
150472 755 774 CATAAATCAGTTTCTCACTA 37 9905 9924 85
592797 757 776 ATCATAAATCAGTTTCTCAC 35 9907 9926 763
592798 759 778 TGATCATAAATCAGTTTCTC 35 9909 9928 764
592799 761 780 AGTGATCATAAATCAGTTTC 5 9911 9930 765
592800 763 782 CAAGTGATCATAAATCAGTT 21 9913 9932 766
592801 765 784 TCCAAGTGATCATAAATCAG 41 9915 9934 767
592802 767 786 CTTCCAAGTGATCATAAATC 44 9917 9936 768
592803 769 788 ATCTTCCAAGTGATCATAAA 30 9919 9938 769
592804 771 790 AAATCTTCCAAGTGATCATA 32 9921 9940 770
489534 792 811 CTGAGTTTTATAAAACTATA 4 9942 9961 771
150476 794 813 AACTGAGTTTTATAAAACTA 9 9944 9963 86
592805 796 815 TTAACTGAGTTTTATAAAAC 14 9946 9965 772
592806 798 817 TTTTAACTGAGTTTTATAAA 3 9948 9967 773
592807 800 819 CATTTTAACTGAGTTTTATA 13 9950 9969 774
489535 802 821 GACATTTTAACTGAGTTTTA 34 9952 9971 775
592808 804 823 CAGACATTTTAACTGAGTTT 40 9954 9973 776
592809 806 825 AACAGACATTTTAACTGAGT 36 9956 9975 777
592810 808 827 GAAACAGACATTTTAACTGA 25 9958 9977 778
592811 810 829 TTGAAACAGACATTTTAACT 24 9960 9979 779
592812 835 854 TTTAAGTCTGGCAAAATACA 23 9985 10004 780
592813 837 856 GATTTAAGTCTGGCAAAATA 31 9987 10006 781
592814 839 858 GTGATTTAAGTCTGGCAAAA 41 9989 10008 782
592815 841 860 CTGTGATTTAAGTCTGGCAA 49 9991 10010 783
592816 843 862 ATCTGTGATTTAAGTCTGGC 53 9993 10012 784
150481 845 864 CCATCTGTGATTTAAGTCTG 51 9995 10014 87
592817 847 866 ACCCATCTGTGATTTAAGTC 51 9997 10016 785
592818 849 868 ATACCCATCTGTGATTTAAG 43 9999 10018 786
592819 851 870 TAATACCCATCTGTGATTTA 42 10001 10020 787
592820 870 889 AAAGAAATTCTGACAAGTTT 22 10020 10039 788
489542 872 891 ACAAAGAAATTCTGACAAGT 13 10022 10041 789
592821 874 893 TGACAAAGAAATTCTGACAA 24 10024 10043 790
592822 876 895 AATGACAAAGAAATTCTGAC 25 10026 10045 791
592823 878 897 TGAATGACAAAGAAATTCTG 6 10028 10047 792
592824 880 899 CTTGAATGACAAAGAAATTC 24 10030 10049 793
489543 882 901 GGCTTGAATGACAAAGAAAT 29 10032 10051 794
592825 884 903 CAGGCTTGAATGACAAAGAA 35 10034 10053 795
592826 886 905 CACAGGCTTGAATGACAAAG 32 10036 10055 796
592827 888 907 TTCACAGGCTTGAATGACAA 41 10038 10057 797
592828 890 909 TATTCACAGGCTTGAATGAC 30 10040 10059 798
150492 909 928 AAGTGCCATACAGGGTTTTT 32 10059 10078 88
592829 911 930 ATAAGTGCCATACAGGGTTT 0 10061 10080 799
150493 913 932 TAATAAGTGCCATACAGGGT 24 10063 10082 89
592830 915 934 CATAATAAGTGCCATACAGG 26 10065 10084 800
150495 917 936 CTCATAATAAGTGCCATACA 35 10067 10086 90
150496 919 938 GCCTCATAATAAGTGCCATA 37 10069 10088 91
592831 921 940 TAGCCTCATAATAAGTGCCA 19 10071 10090 801
592832 923 942 AATAGCCTCATAATAAGTGC 0 10073 10092 802
592833 925 944 TTAATAGCCTCATAATAAGT 19 10075 10094 803
150497 927 946 TTTTAATAGCCTCATAATAA 17 10077 10096 92
592834 929 948 TCTTTTAATAGCCTCATAAT 27 10079 10098 804
592835 931 950 ATTCTTTTAATAGCCTCATA 27 10081 10100 805
150498 933 952 GGATTCTTTTAATAGCCTCA 39 10083 10102 93
592836 935 954 TTGGATTCTTTTAATAGCCT 24 10085 10104 806
592837 937 956 ATTTGGATTCTTTTAATAGC 0 10087 10106 807
592838 939 958 GAATTTGGATTCTTTTAATA 10 10089 10108 808
592839 941 960 TTGAATTTGGATTCTTTTAA 13 10091 10110 809
592840 943 962 GTTTGAATTTGGATTCTTTT 29 10093 10112 810
592841 945 964 TAGTTTGAATTTGGATTCTT 31 10095 10114 811
592842 947 966 TTTAGTTTGAATTTGGATTC 8 10097 10116 812
592843 949 968 TTTTTAGTTTGAATTTGGAT 10 n/a n/a 813
592844 951 970 TTTTTTTAGTTTGAATTTGG 7 n/a n/a 814
Example 2: Inhibition of human SOD-1 in HepG2 cells by MOE gapmers
Modified oligonucleotides were designed targeting a superoxide dismutase 1, soluble (SOD-1) nucleic acid and were tested for their effects on SOD-1 mRNA in vitro. ISIS 146143, ISIS 150438-150440, ISIS 150442, ISIS 150450, ISIS 150455-150457, ISIS 150459, ISIS 150461, ISIS 150469, ISIS 150473, ISIS 150478, ISIS 150484, ISIS 150486, ISIS 150494, ISIS 150508-150510, ISIS 333607, ISIS 333608, ISIS 333611, ISIS 333618, previously disclosed in WO 2005/040180 , were also included in this assay. The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cultured HepG2 cells at a density of 20,000 cells per well were transfected using electroporation with 5,000 nM modified oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR.
Human primer probe set RTS3898 was used to measure mRNA levels. In cases where the oligonucleotide overlapped the amplicon of the primer probe set, an alternative primer probe set, HTS90, was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. 'n.d.' indicates that inhibition levels were not measured using the particular primer probe set.
The newly designed modified oligonucleotides in the Tables below were designed as 5-10-5 MOE gapmers. The 5-10-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of ten 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five nucleosides each. Each nucleoside in the 5' wing segment and each nucleoside in the 3' wing segment has a 2'-MOE modification. The internucleoside linkages throughout each gapmer are phosphorothioate linkages. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). 'n/a' indicates that the modified oligonucleotide does not target that particular gene sequence with 100% complementarity. Table 11
Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence % inhibition with RTS3898 SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 CCGTCGCCCTTCAGCACGCA 64 973 992 21
596301 550 569 CGTTTCCTGTCTTTGTACTT n.d. 9700 9719 815
596302 569 588 CAAGCCAAACGACTTCCAGC 54 9719 9738 816
596303 571 590 CACAAGCCAAACGACTTCCA 47 9721 9740 817
596304 573 592 ACCACAAGCCAAACGACTTC 28 9723 9742 818
596305 575 594 ACACCACAAGCCAAACGACT 49 9725 9744 819
596306 577 596 TTACACCACAAGCCAAACGA 24 9727 9746 820
596307 641 660 GGATAACAGATGAGTTAAGG 48 9791 9810 821
596308 664 683 AGGATACATTTCTACAGCTA 79 9814 9833 822
596309 666 685 TCAGGATACATTTCTACAGC 70 9816 9835 823
596310 668 687 TAT CAGGATACATTT CTACA 58 9818 9837 824
489524 672 691 TGTTTATCAGGATACATTTC 52 9822 9841 825
596311 674 693 AATGTTTATCAGGATACATT 54 9824 9843 826
596312 676 695 TTAATGTTTATCAGGATACA 34 9826 9845 827
596313 678 697 GTTTAATGTTTATCAGGATA 71 9828 9847 828
596314 680 699 GTGTTTAATGTTTATCAGGA 73 9830 9849 829
596315 693 712 TTTTAAGATTACAGTGTTTA 13 9843 9862 830
596316 695 714 ACTTTTAAGATTACAGTGTT 24 9845 9864 831
596317 697 716 ACACTTTTAAGATTACAGTG 15 9847 9866 832
596318 699 718 TTACACTTTTAAGATTACAG 0 9849 9868 833
596319 701 720 AATTACACTTTTAAGATTAC 1 9851 9870 834
596320 705 724 ACACAATTACACTTTTAAGA 0 9855 9874 835
596321 707 726 TCACACAATTACACTTTTAA 15 9857 9876 836
596322 711 730 AAAGTCACACAATTACACTT 15 9861 9880 837
596323 715 734 TGAAAAAGTCACACAATTAC 0 9865 9884 838
596324 717 736 TCTGAAAAAGTCACACAATT 5 9867 9886 839
596325 719 738 ACTCTGAAAAAGTCACACAA 21 9869 9888 840
596326 723 742 AGCAACTCTGAAAAAGTCAC 14 9873 9892 841
596327 730 749 ACTTTAAAGCAACTCTGAAA 0 9880 9899 842
489530 732 751 GTACTTTAAAGCAACTCTGA 22 9882 9901 843
596328 734 753 AGGTACTTTAAAGCAACTCT 36 9884 9903 844
596329 740 759 CACTACAGGTACTTTAAAGC 18 9890 9909 845
150469 742 761 CTCACTACAGGTACTTTAAA 25 9892 9911 94
596330 744 763 TTCTCACTACAGGTACTTTA 28 9894 9913 846
596331 746 765 GTTTCTCACTACAGGTACTT 30 9896 9915 847
596332 748 767 CAGTTTCTCACTACAGGTAC 25 9898 9917 848
596333 750 769 ATCAGTTTCTCACTACAGGT 22 9900 9919 849
489531 752 771 AAATCAGTTTCTCACTACAG 0 9902 9921 850
596334 756 775 TCATAAATCAGTTTCTCACT 21 9906 9925 851
596335 760 779 GTGATCATAAATCAGTTTCT 37 9910 9929 852
489532 762 781 AAGTGATCATAAATCAGTTT 8 9912 9931 853
596336 764 783 CCAAGTGATCATAAATCAGT 39 9914 9933 854
436935 766 785 TTCCAAGTGATCATAAATCA 18 9916 9935 855
596337 768 787 TCTTCCAAGTGATCATAAAT 12 9918 9937 856
150473 770 789 AATCTTCCAAGTGATCATAA 4 9920 9939 95
596338 795 814 TAACTGAGTTTTATAAAACT 0 9945 9964 857
596339 807 826 AAACAGACATTTTAACTGAG 4 9957 9976 858
596340 809 828 TGAAACAGACATTTTAACTG 0 9959 9978 859
150478 811 830 ATTGAAACAGACATTTTAAC 0 9961 9980 96
596341 836 855 ATTTAAGTCTGGCAAAATAC 16 9986 10005 860
596342 840 859 TGTGATTTAAGTCTGGCAAA 34 9990 10009 861
489539 842 861 TCTGTGATTTAAGTCTGGCA 44 9992 10011 862
596343 844 863 CATCTGTGATTTAAGTCTGG 29 9994 10013 863
596344 846 865 CCCATCTGTGATTTAAGTCT 41 9996 10015 864
596345 848 867 TACCCATCTGTGATTTAAGT 50 9998 10017 865
596346 850 869 AATACCCATCTGTGATTTAA 0 10000 10019 866
489540 852 871 TTAATACCCATCTGTGATTT 11 10002 10021 867
150484 871 890 CAAAGAAATTCTGACAAGTT 7 10021 10040 97
596347 873 892 GACAAAGAAATTCTGACAAG 8 10023 10042 868
596348 877 896 GAATGACAAAGAAATTCTGA 0 10027 10046 869
596349 883 902 AGGCTTGAATGACAAAGAAA 27 10033 10052 870
150486 885 904 ACAGGCTTGAATGACAAAGA 19 10035 10054 98
596350 910 929 TAAGTGCCATACAGGGTTTT 13 10060 10079 871
596351 914 933 ATAATAAGTGCCATACAGGG 18 10064 10083 872
150494 916 935 TCATAATAAGTGCCATACAG 0 10066 10085 99
596352 918 937 CCTCATAATAAGTGCCATAC 23 10068 10087 873
596353 920 939 AGCCTCATAATAAGTGCCAT 6 10070 10089 874
596354 922 941 ATAGCCTCATAATAAGTGCC 19 10072 10091 875
596355 928 947 CTTTTAATAGCCTCATAATA 0 10078 10097 876
596356 930 949 TTCTTTTAATAGCCTCATAA 5 10080 10099 877
596357 932 951 GATTCTTTTAATAGCCTCAT 4 10082 10101 878
596358 934 953 TGGATTCTTTTAATAGCCTC 13 10084 10103 879
596359 936 955 TTTGGATTCTTTTAATAGCC 14 10086 10105 880
596360 938 957 AATTTGGATTCTTTTAATAG 14 10088 10107 881
596361 940 959 TGAATTTGGATTCTTTTAAT 0 10090 10109 882
596362 946 965 TTAGTTTGAATTTGGATTCT 0 10096 10115 883
596363 948 967 TTTTAGTTTGAATTTGGATT 0 n/a n/a 884
596364 950 969 TTTTTTAGTTTGAATTTGGA 0 n/a n/a 885
Table 12
Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO:1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence % inhibition with RTS3898 % inhibition with HTS90 SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 CCGTCGCCCTTCAGCACGCA 66 n.d. 973 992 21
596230 246 265 CAGTCCTTTAATGCTTCCCC 51 40 5000 5019 886
596231 248 267 GTCAGTCCTTTAATGCTTCC 34 34 5002 5021 887
596232 250 269 CAGTCAGTCCTTTAATGCTT 35 29 5004 5023 888
596233 252 271 TTCAGTCAGTCCTTTAATGC 24 21 5006 5025 889
596234 256 275 GGCCTTCAGTCAGTCCTTTA 41 39 5010 5029 890
150450 258 277 CAGGCCTTCAGTCAGTCCTT 56 51 5012 5031 100
596235 260 279 TGCAGGCCTTCAGTCAGTCC 42 46 5014 5033 891
596236 262 281 CATGCAGGCCTTCAGTCAGT 37 33 5016 5035 892
596237 278 297 TCATGAACATGGAATCCATG 24 19 5032 5051 893
596238 280 299 ACTCATGAACATGGAATCCA 27 20 5034 5053 894
596239 295 314 CTGTATTATCTCCAAACTCA 32 28 5049 5068 895
596240 309 328 ACTGGTACAGCCTGCTGTAT 22 28 n/a n/a 896
596241 311 330 GCACTGGTACAGCCTGCTGT 31 24 n/a n/a 897
596242 313 332 CTGCACTGGTACAGCCTGCT 38 29 n/a n/a 898
596243 315 334 ACCTGCACTGGTACAGCCTG 46 48 n/a n/a 899
596244 341 360 TTTCTGGATAGAGGATTAAA 6 14 7657 7676 900
596245 343 362 GTTTTCTGGATAGAGGATTA 28 39 7659 7678 901
596246 347 366 CCGTGTTTTCTGGATAGAGG 44 37 7663 7682 902
596247 349 368 CACCGTGTTTTCTGGATAGA 24 11 7665 7684 903
596248 351 370 CCCACCGTGTTTTCTGGATA 46 40 7667 7686 904
596249 353 372 GGCCCACCGTGTTTTCTGGA 46 41 7669 7688 905
596250 355 374 TTGGCCCACCGTGTTTTCTG 35 26 7671 7690 906
596251 357 376 CTTTGGCCCACCGTGTTTTC 31 15 7673 7692 907
596252 359 378 TCCTTTGGCCCACCGTGTTT 30 23 7675 7694 908
596253 383 402 AAGTCTCCAACATGCCTCTC 20 6 n/a n/a 909
596254 387 406 GCCCAAGTCTCCAACATGCC 61 53 8442 8461 910
596255 389 408 TTGCCCAAGTCTCCAACATG 41 33 8444 8463 911
596256 391 410 CATTGCCCAAGTCTCCAACA 39 25 8446 8465 912
150455 393 412 CACATTGCCCAAGTCTCCAA 36 19 8448 8467 101
596257 397 416 CAGTCACATTGCCCAAGTCT 40 27 8452 8471 913
596258 401 420 TCAGCAGTCACATTGCCCAA 52 42 8456 8475 914
596259 403 422 TGTCAGCAGTCACATTGCCC 55 49 8458 8477 915
596260 405 424 TTTGTCAGCAGTCACATTGC 26 16 8460 8479 916
596261 407 426 TCTTTGTCAGCAGTCACATT 20 11 8462 8481 917
596262 409 428 CATCTTTGTCAGCAGTCACA 34 13 8464 8483 918
596263 411 430 ACCATCTTTGTCAGCAGTCA 41 30 8466 8485 919
596264 415 434 CCACACCATCTTTGTCAGCA 39 20 8470 8489 920
596265 417 436 GGCCACACCATCTTTGTCAG 23 5 8472 8491 921
150456 419 438 TCGGCCACACCATCTTTGTC 32 28 8474 8493 102
150457 421 440 CATCGGCCACACCATCTTTG 34 38 8476 8495 103
596266 423 442 CACATCGGCCACACCATCTT 27 13 8478 8497 922
596267 425 444 GACACATCGGCCACACCATC 45 30 8480 8499 923
150459 427 446 TAGACACATCGGCCACACCA 46 36 8482 8501 104
596268 429 448 AATAGACACATCGGCCACAC 30 25 8484 8503 924
596269 431 450 TCAATAGACACATCGGCCAC 35 0 8486 8505 925
596270 433 452 CTTCAATAGACACATCGGCC 39 16 8488 8507 926
596271 435 454 ATCTTCAATAGACACATCGG 16 0 8490 8509 927
596272 437 456 GAATCTTCAATAGACACATC 22 11 8492 8511 928
596273 439 458 CAGAATCTTCAATAGACACA 17 0 8494 8513 929
596274 441 460 CACAGAATCTTCAATAGACA 10 14 8496 8515 930
596275 443 462 ATCACAGAATCTTCAATAGA 11 10 8498 8517 931
596276 445 464 AGATCACAGAATCTTCAATA 14 29 8500 8519 932
596277 447 466 TGAGATCACAGAATCTTCAA n.d. 30 8502 8521 933
596278 449 468 AGTGAGATCACAGAATCTTC n.d. 30 8504 8523 934
596279 453 472 TGAGAGTGAGATCACAGAAT n.d. 18 8508 8527 935
333618 457 476 CTCCTGAGAGTGAGATCACA n.d. 27 8512 8531 105
596281 459 478 GTCTCCTGAGAGTGAGATCA n.d. 23 8514 8533 936
596282 461 480 TGGTCTCCTGAGAGTGAGAT n.d. 24 8516 8535 937
596283 463 482 AATGGTCTCCTGAGAGTGAG n.d. 22 8518 8537 938
596284 465 484 GCAATGGTCTCCTGAGAGTG n.d. 57 8520 8539 939
596285 467 486 ATGCAATGGTCTCCTGAGAG n.d. 0 8522 8541 940
596286 469 488 TGATGCAATGGTCTCCTGAG n.d. 1 8524 8543 941
596287 471 490 AATGATGCAATGGTCTCCTG n.d. 0 8526 8545 942
596288 473 492 CCAATGATGCAATGGTCTCC n.d. 8 8528 8547 943
596289 475 494 GGCCAATGATGCAATGGTCT n.d. 9 8530 8549 944
596290 477 496 GCGGCCAATGATGCAATGGT n.d. 13 8532 8551 945
596291 479 498 GTGCGGCCAATGATGCAATG n.d. 12 8534 8553 946
596292 481 500 GTGTGCGGCCAATGATGCAA n.d. 15 8536 8555 947
596293 483 502 CAGTGTGCGGCCAATGATGC n.d. 0 8538 8557 948
596294 485 504 ACCAGTGTGCGGCCAATGAT n.d. 0 8540 8559 949
596295 487 506 CCACCAGTGTGCGGCCAATG n.d. 22 8542 8561 950
596296 489 508 GACCACCAGTGTGCGGCCAA n.d. 16 n/a n/a 951
596297 491 510 TGGACCACCAGTGTGCGGCC n.d. 28 n/a n/a 952
150461 493 512 CATGGACCACCAGTGTGCGG n.d. 25 n/a n/a 106
596298 495 514 TTCATGGACCACCAGTGTGC n.d. 21 n/a n/a 953
596299 497 516 TTTTCATGGACCACCAGTGT n.d. 17 n/a n/a 954
596300 499 518 CTTTTTCATGGACCACCAGT n.d. 9 n/a n/a 955
Example 3: Inhibition of human SOD-1 in HepG2 cells by deoxy, MOE and cEt gapmers
Modified oligonucleotides were designed targeting a superoxide dismutase 1, soluble (SOD-1) nucleic acid and were tested for their effects on SOD-1 mRNA in vitro. ISIS 333611, which was previously described in WO 2005/040180 , was included as a benchmark. ISIS 590067, ISIS 590074, ISIS 590082, ISIS 590130, ISIS 590138, and ISIS 590146, which are 5-10-5 MOE gapmers as described above in Example 1, were also included in this assay. ISIS 590512, which has a similar sequence as ISIS 333611 but with deoxy, MOE, and cEt sugar modifications, was also included in this study.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cultured HepG2 cells at a density of 20,000 cells per well were transfected using electroporation with 3,000 nM modified oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR.
Human primer probe set RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by PIBOGPEEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. 'n.d.' indicates that inhibition levels were not measured.
The newly designed modified oligonucleotides in the Tables below were designed as deoxy, MOE, and cEt gapmers. The gapmers are 17 nucleosides in length wherein each nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety. The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar. The internucleoside linkages throughout each gapmer are phosphorothioate linkages. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). 'n/a' indicates that the modified oligonucleotide does not target that particular gene sequence with 100% complementarity. Table 13
Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence Chemistry % inhibition SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
590434 1 17 eeekkdddddddkkeee 17 807 823 956
590435 2 18 eeekkdddddddkkeee 15 808 824 957
590436 3 19 eeekkdddddddkkeee 22 809 825 958
590437 4 20 eeekkdddddddkkeee 14 810 826 959
590438 35 51 eeekkdddddddkkeee 12 841 857 960
590439 36 52 eeekkdddddddkkeee 12 842 858 961
590440 37 53 eeekkdddddddkkeee 11 843 859 962
590441 38 54 eeekkdddddddkkeee 5 844 860 963
590442 76 92 eeekkdddddddkkeee 0 882 898 964
590443 77 93 eeekkdddddddkkeee 25 883 899 965
590444 167 183 eeekkdddddddkkeee 31 973 989 966
590445 168 184 eeekkdddddddkkeee 28 974 990 967
590512 169 185 eeekkdddddddkkeee 8 975 991 968
590446 170 186 eeekkdddddddkkeee 27 976 992 969
590447 171 187 eeekkdddddddkkeee 33 977 993 970
590448 202 218 eeekkdddddddkkeee 34 1008 1024 971
590449 203 219 eeekkdddddddkkeee 18 1009 1025 972
590450 204 220 eeekkdddddddkkeee 13 1010 1026 973
590451 205 221 eeekkdddddddkkeee 16 1011 1027 974
590452 206 222 eeekkdddddddkkeee 14 n/a n/a 975
590453 207 223 eeekkdddddddkkeee 13 n/a n/a 976
590454 208 224 eeekkdddddddkkeee 6 n/a n/a 977
590455 209 225 eeekkdddddddkkeee 0 n/a n/a 978
590456 210 226 eeekkdddddddkkeee 0 n/a n/a 979
590457 211 227 eeekkdddddddkkeee n.d. n/a n/a 980
590458 212 228 eeekkdddddddkkeee n.d. n/a n/a 981
590459 213 229 eeekkdddddddkkeee n.d. n/a n/a 982
590461 214 230 eeekkdddddddkkeee n.d. n/a n/a 983
590462 215 231 eeekkdddddddkkeee n.d. n/a n/a 984
590463 216 232 eeekkdddddddkkeee n.d. n/a n/a 985
590464 217 233 eeekkdddddddkkeee n.d. n/a n/a 986
590465 218 234 eeekkdddddddkkeee n.d. 4972 4988 987
590466 219 235 eeekkdddddddkkeee 5 4973 4989 988
590467 220 236 eeekkdddddddkkeee 11 4974 4990 989
590468 221 237 eeekkdddddddkkeee 14 4975 4991 990
590469 222 238 eeekkdddddddkkeee 12 4976 4992 991
590470 223 239 eeekkdddddddkkeee 15 4977 4993 992
590471 224 240 eeekkdddddddkkeee 14 4978 4994 993
590472 225 241 eeekkdddddddkkeee 11 4979 4995 994
590473 226 242 eeekkdddddddkkeee 8 4980 4996 995
590474 227 243 eeekkdddddddkkeee 44 4981 4997 996
590475 228 244 eeekkdddddddkkeee 53 4982 4998 997
590476 229 245 eeekkdddddddkkeee 20 4983 4999 998
590477 230 246 eeekkdddddddkkeee 12 4984 5000 999
590478 231 247 eeekkdddddddkkeee 36 4985 5001 1000
590479 232 248 eeekkdddddddkkeee 18 4986 5002 1001
590480 233 249 eeekkdddddddkkeee 14 4987 5003 1002
590481 235 251 eeekkdddddddkkeee 8 4989 5005 1003
590482 236 252 eeekkdddddddkkeee 29 4990 5006 1004
590483 237 253 eeekkdddddddkkeee 36 4991 5007 1005
590484 238 254 eeekkdddddddkkeee 43 4992 5008 1006
590485 239 255 eeekkdddddddkkeee 41 4993 5009 1007
590486 240 256 eeekkdddddddkkeee 35 4994 5010 1008
590487 241 257 eeekkdddddddkkeee 52 4995 5011 1009
590488 264 280 eeekkdddddddkkeee 37 5018 5034 1010
590489 265 281 eeekkdddddddkkeee 41 5019 5035 1011
590490 266 282 eeekkdddddddkkeee 21 5020 5036 1012
590491 267 283 eeekkdddddddkkeee 18 5021 5037 1013
590492 268 284 eeekkdddddddkkeee 27 5022 5038 1014
590493 269 285 eeekkdddddddkkeee 13 5023 5039 1015
590494 270 286 eeekkdddddddkkeee 9 5024 5040 1016
590495 271 287 eeekkdddddddkkeee 7 5025 5041 1017
590496 272 288 eeekkdddddddkkeee 12 5026 5042 1018
590497 273 289 eeekkdddddddkkeee 9 5027 5043 1019
590498 274 290 eeekkdddddddkkeee 14 5028 5044 1020
590499 275 291 eeekkdddddddkkeee 0 5029 5045 1021
590500 276 292 eeekkdddddddkkeee 10 5030 5046 1022
590501 277 293 eeekkdddddddkkeee 9 5031 5047 1023
590502 278 294 eeekkdddddddkkeee 2 5032 5048 1024
590503 279 295 eeekkdddddddkkeee 8 5033 5049 1025
590504 316 332 eeekkdddddddkkeee 3 7632 7648 1026
590505 317 333 eeekkdddddddkkeee 17 7633 7649 1027
590506 318 334 eeekkdddddddkkeee 12 7634 7650 1028
590507 319 335 eeekkdddddddkkeee 7 7635 7651 1029
590508 320 336 eeekkdddddddkkeee 7 7636 7652 1030
590509 321 337 eeekkdddddddkkeee 4 7637 7653 1031
590510 322 338 eeekkdddddddkkeee 17 7638 7654 1032
590511 323 339 eeekkdddddddkkeee 8 7639 7655 1033
Table 14
Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence Chemistry % inhibition SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
590512 169 185 eeekkdddddddkkeee 45 975 991 968
590513 324 340 eeekkdddddddkkeee 21 7640 7656 1034
590514 325 341 eeekkdddddddkkeee 21 7641 7657 1035
590515 326 342 eeekkdddddddkkeee 16 7642 7658 1036
590516 327 343 eeekkdddddddkkeee 20 7643 7659 1037
590517 328 344 eeekkdddddddkkeee 19 7644 7660 1038
590518 329 345 eeekkdddddddkkeee 14 7645 7661 1039
590519 330 346 eeekkdddddddkkeee 51 7646 7662 1040
590520 331 347 eeekkdddddddkkeee 8 7647 7663 1041
590521 332 348 eeekkdddddddkkeee 30 7648 7664 1042
590522 333 349 eeekkdddddddkkeee 23 7649 7665 1043
590523 334 350 eeekkdddddddkkeee 40 7650 7666 1044
590524 335 351 eeekkdddddddkkeee 16 7651 7667 1045
590525 336 352 eeekkdddddddkkeee 21 7652 7668 1046
590526 337 353 eeekkdddddddkkeee 9 7653 7669 1047
590527 338 354 eeekkdddddddkkeee 8 7654 7670 1048
590528 339 355 eeekkdddddddkkeee 14 7655 7671 1049
590530 340 356 eeekkdddddddkkeee 23 7656 7672 1050
590531 341 357 eeekkdddddddkkeee 26 7657 7673 1051
590532 342 358 eeekkdddddddkkeee 25 7658 7674 1052
590533 360 376 eeekkdddddddkkeee 41 7676 7692 1053
590534 361 377 eeekkdddddddkkeee 46 7677 7693 1054
590535 362 378 eeekkdddddddkkeee 39 7678 7694 1055
590536 363 379 eeekkdddddddkkeee n.d. 7679 7695 1056
590537 364 380 eeekkdddddddkkeee n.d. 7680 7696 1057
590538 365 381 eeekkdddddddkkeee n.d. 7681 7697 1058
590539 366 382 eeekkdddddddkkeee n.d. 7682 7698 1059
590540 367 383 eeekkdddddddkkeee n.d. 7683 7699 1060
590541 368 384 eeekkdddddddkkeee n.d. 7684 7700 1061
590542 369 385 eeekkdddddddkkeee n.d. 7685 7701 1062
590543 370 386 eeekkdddddddkkeee n.d. 7686 7702 1063
590544 371 387 eeekkdddddddkkeee 2 7687 7703 1064
590545 374 390 eeekkdddddddkkeee 6 n/a n/a 1065
590546 375 391 eeekkdddddddkkeee 0 n/a n/a 1066
590547 376 392 eeekkdddddddkkeee 14 n/a n/a 1067
590548 377 393 eeekkdddddddkkeee 0 n/a n/a 1068
590549 378 394 eeekkdddddddkkeee 13 n/a n/a 1069
590550 379 395 eeekkdddddddkkeee 3 n/a n/a 1070
590551 380 396 eeekkdddddddkkeee 0 n/a n/a 1071
590552 381 397 eeekkdddddddkkeee 0 n/a n/a 1072
590553 382 398 eeekkdddddddkkeee 5 n/a n/a 1073
590554 383 399 eeekkdddddddkkeee 10 n/a n/a 1074
590555 384 400 eeekkdddddddkkeee 8 n/a n/a 1075
590556 402 418 eeekkdddddddkkeee 18 8457 8473 1076
590557 403 419 eeekkdddddddkkeee 7 8458 8474 1077
590558 429 445 eeekkdddddddkkeee 21 8484 8500 1078
590559 436 452 eeekkdddddddkkeee 9 8491 8507 1079
590560 449 465 eeekkdddddddkkeee 13 8504 8520 1080
590561 501 517 eeekkdddddddkkeee 76 n/a n/a 1081
590562 502 518 eeekkdddddddkkeee 87 n/a n/a 1082
590563 503 519 eeekkdddddddkkeee 71 n/a n/a 1083
590564 504 520 eeekkdddddddkkeee 51 n/a n/a 1084
590565 505 521 eeekkdddddddkkeee 65 9655 9671 1085
590566 506 522 eeekkdddddddkkeee 55 9656 9672 1086
590567 507 523 eeekkdddddddkkeee 42 9657 9673 1087
590568 508 524 eeekkdddddddkkeee 70 9658 9674 1088
590569 509 525 eeekkdddddddkkeee 71 9659 9675 1089
590570 510 526 eeekkdddddddkkeee 74 9660 9676 1090
590571 511 527 eeekkdddddddkkeee 76 9661 9677 1091
590572 512 528 eeekkdddddddkkeee 83 9662 9678 1092
590573 513 529 eeekkdddddddkkeee 42 9663 9679 1093
590574 514 530 eeekkdddddddkkeee 50 9664 9680 1094
590575 515 531 eeekkdddddddkkeee 72 9665 9681 1095
590576 516 532 eeekkdddddddkkeee 93 9666 9682 1096
590577 517 533 eeekkdddddddkkeee 90 9667 9683 1097
590578 518 534 eeekkdddddddkkeee 92 9668 9684 1098
590579 524 540 eeekkdddddddkkeee 91 9674 9690 1099
590580 525 541 eeekkdddddddkkeee 88 9675 9691 1100
590581 526 542 eeekkdddddddkkeee 87 9676 9692 1101
590582 527 543 eeekkdddddddkkeee 78 9677 9693 1102
590583 528 544 eeekkdddddddkkeee 63 9678 9694 1103
590584 529 545 eeekkdddddddkkeee 73 9679 9695 1104
590585 530 546 eeekkdddddddkkeee 57 9680 9696 1105
590586 531 547 eeekkdddddddkkeee 33 9681 9697 1106
590587 533 549 eeekkdddddddkkeee 31 9683 9699 1107
590588 536 552 eeekkdddddddkkeee 11 9686 9702 1108
590589 537 553 eeekkdddddddkkeee 15 9687 9703 1109
590590 538 554 eeekkdddddddkkeee 18 9688 9704 1110
Table 15
Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence Chemistry % inhibition SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
590512 169 185 eeekkdddddddkkeee 21 975 991 968
590591 582 598 eeekkdddddddkkeee 21 9732 9748 1111
590592 583 599 eeekkdddddddkkeee 33 9733 9749 1112
590593 584 600 eeekkdddddddkkeee 29 9734 9750 1113
590594 585 601 eeekkdddddddkkeee 29 9735 9751 1114
590595 588 604 eeekkdddddddkkeee 3 9738 9754 1115
590596 589 605 eeekkdddddddkkeee 12 9739 9755 1116
590597 590 606 eeekkdddddddkkeee 19 9740 9756 1117
590598 591 607 eeekkdddddddkkeee 9 9741 9757 1118
590599 592 608 eeekkdddddddkkeee 18 9742 9758 1119
590600 593 609 eeekkdddddddkkeee 20 9743 9759 1120
590601 594 610 eeekkdddddddkkeee 26 9744 9760 1121
590602 595 611 eeekkdddddddkkeee 19 9745 9761 1122
590603 596 612 eeekkdddddddkkeee 3 9746 9762 1123
590604 597 613 eeekkdddddddkkeee 15 9747 9763 1124
590605 598 614 eeekkdddddddkkeee 20 9748 9764 1125
590606 599 615 eeekkdddddddkkeee 18 9749 9765 1126
590607 600 616 eeekkdddddddkkeee 21 9750 9766 1127
590608 601 617 eeekkdddddddkkeee 28 9751 9767 1128
590609 602 618 eeekkdddddddkkeee 30 9752 9768 1129
590610 603 619 eeekkdddddddkkeee 14 9753 9769 1130
590611 604 620 eeekkdddddddkkeee 15 9754 9770 1131
590612 607 623 eeekkdddddddkkeee 2 9757 9773 1132
590613 608 624 eeekkdddddddkkeee n.d. 9758 9774 1133
590614 609 625 eeekkdddddddkkeee n.d. 9759 9775 1134
590615 610 626 eeekkdddddddkkeee n.d. 9760 9776 1135
590616 611 627 eeekkdddddddkkeee n.d. 9761 9777 1136
590617 612 628 eeekkdddddddkkeee n.d. 9762 9778 1137
590618 613 629 eeekkdddddddkkeee n.d. 9763 9779 1138
590619 614 630 eeekkdddddddkkeee n.d. 9764 9780 1139
590620 615 631 eeekkdddddddkkeee n.d. 9765 9781 1140
590621 616 632 eeekkdddddddkkeee 7 9766 9782 1141
590622 617 633 eeekkdddddddkkeee 19 9767 9783 1142
590623 618 634 eeekkdddddddkkeee 39 9768 9784 1143
590624 619 635 eeekkdddddddkkeee 53 9769 9785 1144
590625 620 636 eeekkdddddddkkeee 57 9770 9786 1145
590626 621 637 eeekkdddddddkkeee 76 9771 9787 1146
590627 622 638 eeekkdddddddkkeee 58 9772 9788 1147
590628 623 639 eeekkdddddddkkeee 43 9773 9789 1148
590629 624 640 eeekkdddddddkkeee 24 9774 9790 1149
590630 625 641 eeekkdddddddkkeee 24 9775 9791 1150
590631 643 659 eeekkdddddddkkeee 11 9793 9809 1151
590632 644 660 eeekkdddddddkkeee 32 9794 9810 1152
590633 645 661 eeekkdddddddkkeee 45 9795 9811 1153
590634 646 662 eeekkdddddddkkeee 65 9796 9812 1154
590635 647 663 eeekkdddddddkkeee 58 9797 9813 1155
590636 648 664 eeekkdddddddkkeee 45 9798 9814 1156
590637 649 665 eeekkdddddddkkeee 34 9799 9815 1157
590638 650 666 eeekkdddddddkkeee 39 9800 9816 1158
590639 651 667 eeekkdddddddkkeee 10 9801 9817 1159
590640 652 668 eeekkdddddddkkeee 15 9802 9818 1160
590641 653 669 eeekkdddddddkkeee 21 9803 9819 1161
590642 654 670 eeekkdddddddkkeee 20 9804 9820 1162
590643 655 671 eeekkdddddddkkeee 40 9805 9821 1163
590644 656 672 eeekkdddddddkkeee 55 9806 9822 1164
590645 657 673 eeekkdddddddkkeee 51 9807 9823 1165
590646 658 674 eeekkdddddddkkeee 31 9808 9824 1166
590647 659 675 eeekkdddddddkkeee 38 9809 9825 1167
590648 660 676 eeekkdddddddkkeee 45 9810 9826 1168
590649 661 677 eeekkdddddddkkeee 34 9811 9827 1169
590650 664 680 eeekkdddddddkkeee 57 9814 9830 1170
590651 665 681 eeekkdddddddkkeee 40 9815 9831 1171
590652 683 699 eeekkdddddddkkeee 37 9833 9849 1172
590653 684 700 eeekkdddddddkkeee 67 9834 9850 1173
590654 685 701 eeekkdddddddkkeee 54 9835 9851 1174
590655 686 702 eeekkdddddddkkeee 56 9836 9852 1175
590656 687 703 eeekkdddddddkkeee 30 9837 9853 1176
590657 688 704 eeekkdddddddkkeee 18 9838 9854 1177
590658 689 705 eeekkdddddddkkeee 24 9839 9855 1178
590659 690 706 eeekkdddddddkkeee 10 9840 9856 1179
590660 691 707 eeekkdddddddkkeee 45 9841 9857 1180
590661 692 708 eeekkdddddddkkeee 34 9842 9858 1181
590662 693 709 eeekkdddddddkkeee 54 9843 9859 1182
590663 694 710 eeekkdddddddkkeee 54 9844 9860 1183
590664 772 788 eeekkdddddddkkeee 7 9922 9938 1184
590665 773 789 eeekkdddddddkkeee 23 9923 9939 1185
590666 774 790 eeekkdddddddkkeee 4 9924 9940 1186
590667 775 791 eeekkdddddddkkeee 18 9925 9941 1187
Table 16
Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence Chemistry % inhibition SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
590512 169 185 eeekkdddddddkkeee 16 975 991 968
590668 777 793 eeekkdddddddkkeee 17 9927 9943 1188
590669 778 794 eeekkdddddddkkeee 15 9928 9944 1189
590670 779 795 eeekkdddddddkkeee 11 9929 9945 1190
590671 780 796 eeekkdddddddkkeee 13 9930 9946 1191
590672 781 797 eeekkdddddddkkeee 10 9931 9947 1192
590673 782 798 eeekkdddddddkkeee 28 9932 9948 1193
590674 783 799 eeekkdddddddkkeee 26 9933 9949 1194
590675 786 802 eeekkdddddddkkeee 14 9936 9952 1195
590676 791 807 eeekkdddddddkkeee 22 9941 9957 1196
590677 793 809 eeekkdddddddkkeee 6 9943 9959 1197
590678 814 830 eeekkdddddddkkeee 22 9964 9980 1198
590679 815 831 eeekkdddddddkkeee 11 9965 9981 1199
590680 816 832 eeekkdddddddkkeee 10 9966 9982 1200
590681 817 833 eeekkdddddddkkeee 23 9967 9983 1201
590682 818 834 eeekkdddddddkkeee 11 9968 9984 1202
590683 819 835 eeekkdddddddkkeee 21 9969 9985 1203
590684 820 836 eeekkdddddddkkeee 14 9970 9986 1204
590685 821 837 eeekkdddddddkkeee 14 9971 9987 1205
590686 822 838 eeekkdddddddkkeee 9 9972 9988 1206
590687 823 839 eeekkdddddddkkeee 14 9973 9989 1207
590688 824 840 eeekkdddddddkkeee 6 9974 9990 1208
590689 825 841 eeekkdddddddkkeee 2 9975 9991 1209
590690 826 842 eeekkdddddddkkeee n.d. 9976 9992 1210
590691 827 843 eeekkdddddddkkeee n.d. 9977 9993 1211
590692 828 844 eeekkdddddddkkeee n.d. 9978 9994 1212
590693 829 845 eeekkdddddddkkeee n.d. 9979 9995 1213
590694 830 846 eeekkdddddddkkeee n.d. 9980 9996 1214
590695 831 847 eeekkdddddddkkeee n.d. 9981 9997 1215
590696 832 848 eeekkdddddddkkeee n.d. 9982 9998 1216
590697 833 849 eeekkdddddddkkeee n.d. 9983 9999 1217
590698 834 850 eeekkdddddddkkeee 1 9984 10000 1218
590699 835 851 eeekkdddddddkkeee 10 9985 10001 1219
590700 836 852 eeekkdddddddkkeee 4 9986 10002 1220
590701 837 853 eeekkdddddddkkeee 2 9987 10003 1221
590702 853 869 eeekkdddddddkkeee 7 10003 10019 1222
590703 854 870 eeekkdddddddkkeee 4 10004 10020 1223
590704 855 871 eeekkdddddddkkeee 2 10005 10021 1224
590705 856 872 eeekkdddddddkkeee 0 10006 10022 1225
590706 857 873 eeekkdddddddkkeee 17 10007 10023 1226
590707 858 874 eeekkdddddddkkeee 10 10008 10024 1227
590708 859 875 eeekkdddddddkkeee 12 10009 10025 1228
590709 860 876 eeekkdddddddkkeee 37 10010 10026 1229
590710 861 877 eeekkdddddddkkeee 23 10011 10027 1230
590711 862 878 eeekkdddddddkkeee 24 10012 10028 1231
590712 863 879 eeekkdddddddkkeee 27 10013 10029 1232
590713 864 880 eeekkdddddddkkeee 10 10014 10030 1233
590714 865 881 eeekkdddddddkkeee 0 10015 10031 1234
590715 866 882 eeekkdddddddkkeee 6 10016 10032 1235
590716 867 883 eeekkdddddddkkeee 9 10017 10033 1236
590717 868 884 eeekkdddddddkkeee 15 10018 10034 1237
590718 869 885 eeekkdddddddkkeee 21 10019 10035 1238
590719 870 886 eeekkdddddddkkeee 14 10020 10036 1239
590720 871 887 eeekkdddddddkkeee 8 10021 10037 1240
590721 872 888 eeekkdddddddkkeee 18 10022 10038 1241
590722 891 907 eeekkdddddddkkeee 9 10041 10057 1242
590723 892 908 eeekkdddddddkkeee 11 10042 10058 1243
590724 893 909 eeekkdddddddkkeee 0 10043 10059 1244
590725 894 910 eeekkdddddddkkeee 10 10044 10060 1245
590726 895 911 eeekkdddddddkkeee 29 10045 10061 1246
590727 896 912 eeekkdddddddkkeee 28 10046 10062 1247
590728 897 913 eeekkdddddddkkeee 31 10047 10063 1248
590729 898 914 eeekkdddddddkkeee 10 10048 10064 1249
590731 899 915 eeekkdddddddkkeee 22 10049 10065 1250
590732 900 916 eeekkdddddddkkeee 17 10050 10066 1251
590733 901 917 eeekkdddddddkkeee 24 10051 10067 1252
590734 902 918 eeekkdddddddkkeee 17 10052 10068 1253
590735 903 919 eeekkdddddddkkeee 10 10053 10069 1254
590736 904 920 eeekkdddddddkkeee 11 10054 10070 1255
590737 905 921 eeekkdddddddkkeee 3 10055 10071 1256
590738 906 922 eeekkdddddddkkeee 0 10056 10072 1257
590739 907 923 eeekkdddddddkkeee 1 10057 10073 1258
590740 908 924 eeekkdddddddkkeee 11 10058 10074 1259
590741 909 925 eeekkdddddddkkeee 9 10059 10075 1260
590742 910 926 eeekkdddddddkkeee 7 10060 10076 1261
590743 911 927 eeekkdddddddkkeee 9 10061 10077 1262
590744 938 954 eeekkdddddddkkeee 8 10088 10104 1263
590745 951 967 eeekkdddddddkkeee 12 n/a n/a 1264
Table 17
Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence Chemistry % inhibition SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 eeeeeddddddddddeeeee 66 973 992 21
590067 202 221 eeeeeddddddddddeeeee 53 1008 1027 120
590074 209 228 eeeeeddddddddddeeeee 30 n/a n/a 127
590457 211 227 eeekkdddddddkkeee 14 n/a n/a 980
590458 212 228 eeekkdddddddkkeee 22 n/a n/a 981
590459 213 229 eeekkdddddddkkeee 15 n/a n/a 982
590461 214 230 eeekkdddddddkkeee 28 n/a n/a 983
590462 215 231 eeekkdddddddkkeee 37 n/a n/a 984
590463 216 232 eeekkdddddddkkeee 18 n/a n/a 985
590082 217 236 eeeeeddddddddddeeeee 50 n/a n/a 135
590464 217 233 eeekkdddddddkkeee 33 n/a n/a 986
590465 218 234 eeekkdddddddkkeee 18 4972 4988 987
590130 363 382 eeeeeddddddddddeeeee 30 7679 7698 194
590536 363 379 eeekkdddddddkkeee 51 7679 7695 1056
590537 364 380 eeekkdddddddkkeee 38 7680 7696 1057
590538 365 381 eeekkdddddddkkeee 27 7681 7697 1058
590539 366 382 eeekkdddddddkkeee 26 7682 7698 1059
590540 367 383 eeekkdddddddkkeee 35 7683 7699 1060
590541 368 384 eeekkdddddddkkeee 15 7684 7700 1061
590542 369 385 eeekkdddddddkkeee 26 7685 7701 1062
590543 370 386 eeekkdddddddkkeee 14 7686 7702 1063
590138 371 390 eeeeeddddddddddeeeee 32 n/a n/a 202
590146 505 524 eeeeeddddddddddeeeee 46 9655 9674 211
590613 608 624 eeekkdddddddkkeee 19 9758 9774 1133
590614 609 625 eeekkdddddddkkeee 36 9759 9775 1134
590615 610 626 eeekkdddddddkkeee 32 9760 9776 1135
590616 611 627 eeekkdddddddkkeee 42 9761 9777 1136
590617 612 628 eeekkdddddddkkeee 16 9762 9778 1137
590618 613 629 eeekkdddddddkkeee 30 9763 9779 1138
590619 614 630 eeekkdddddddkkeee 30 9764 9780 1139
590620 615 631 eeekkdddddddkkeee 40 9765 9781 1140
590690 826 842 eeekkdddddddkkeee 28 9976 9992 1210
590691 827 843 eeekkdddddddkkeee 23 9977 9993 1211
590692 828 844 eeekkdddddddkkeee 43 9978 9994 1212
590693 829 845 eeekkdddddddkkeee 39 9979 9995 1213
590694 830 846 eeekkdddddddkkeee 26 9980 9996 1214
590695 831 847 eeekkdddddddkkeee 18 9981 9997 1215
590696 832 848 eeekkdddddddkkeee 0 9982 9998 1216
590697 833 849 eeekkdddddddkkeee 24 9983 9999 1217
Example 4: Inhibition of human SOD-1 in HepG2 cells by deoxy, MOE and cEt gapmers
Modified oligonucleotides were designed targeting a superoxide dismutase 1, soluble (SOD-1) nucleic acid and were tested for their effects on SOD-1 mRNA in vitro. ISIS 333611, a 5-10-5 MOE gapmer which was previously described in WO 2005/040180 , was included as a benchmark.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cultured HepG2 cells at a density of 20,000 cells per well were transfected using electroporation with 4,000 nM modified oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR.
Human primer probe set RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. 'n.d.' indicates that inhibition levels were not measured.
The newly designed modified oligonucleotides in the Tables below were designed as deoxy, MOE, and cEt gapmers or 5-10-5 gapmers. The 5-10-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of ten 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' direction comprising five nucleosides each. Each nucleoside in the 5' wing segment and each nucleoside in the 3' wing segment has a 2'-MOE modification. The deoxy, MOE and cEt oligonucleotides are 17 nucleosides in length wherein the nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety. The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar. The internucleoside linkages throughout each gapmer are phosphorothioate linkages. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). 'n/a' indicates that the modified oligonucleotide does not target that particular gene sequence with 100% complementarity. Table 18
Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence % inhibition SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
596168 3 22 CTCGCCCACTCTGGCCCCAA 45 809 828 1265
596169 5 24 GCCTCGCCCACTCTGGCCCC 37 811 830 1266
596170 7 26 GCGCCTCGCCCACTCTGGCC 33 813 832 1267
596171 9 28 CCGCGCCTCGCCCACTCTGG 27 815 834 1268
596172 11 30 CTCCGCGCCTCGCCCACTCT 40 817 836 1269
596173 13 32 ACCTCCGCGCCTCGCCCACT 77 819 838 1270
596174 15 34 AGACCTCCGCGCCTCGCCCA 72 821 840 1271
596175 17 36 CCAGACCTCCGCGCCTCGCC 46 823 842 1272
596176 19 38 GGCCAGACCTCCGCGCCTCG 49 825 844 1273
150508 21 40 TAGGCCAGACCTCCGCGCCT 33 827 846 107
596177 23 42 TATAGGCCAGACCTCCGCGC 40 829 848 1274
596178 25 44 TTTATAGGCCAGACCTCCGC 69 831 850 1275
150509 27 46 ACTTTATAGGCCAGACCTCC 64 833 852 108
596179 31 50 GACTACTTTATAGGCCAGAC 74 837 856 1276
596180 33 52 GCGACTACTTTATAGGCCAG 19 839 858 1277
596181 37 56 CTCCGCGACTACTTTATAGG 27 843 862 1278
596182 39 58 GTCTCCGCGACTACTTTATA 22 845 864 1279
596183 41 60 CCGTCTCCGCGACTACTTTA 20 847 866 1280
596184 43 62 CCCCGTCTCCGCGACTACTT 16 849 868 1281
596185 45 64 CACCCCGTCTCCGCGACTAC 13 851 870 1282
596186 47 66 AGCACCCCGTCTCCGCGACT 24 853 872 1283
596187 49 68 CCAGCACCCCGTCTCCGCGA 38 855 874 1284
596188 51 70 AACCAGCACCCCGTCTCCGC 11 857 876 1285
596189 53 72 CAAACCAGCACCCCGTCTCC 13 859 878 1286
596190 55 74 CGCAAACCAGCACCCCGTCT 21 861 880 1287
150510 57 76 GACGCAAACCAGCACCCCGT 45 863 882 109
596191 59 78 ACGACGCAAACCAGCACCCC 30 865 884 1288
596192 61 80 CTACGACGCAAACCAGCACC 19 867 886 1289
596193 63 82 GACTACGACGCAAACCAGCA 40 869 888 1290
596194 65 84 GAGACTACGACGCAAACCAG 23 871 890 1291
596195 67 86 AGGAGACTACGACGCAAACC 35 873 892 1292
596196 69 88 GCAGGAGACTACGACGCAAA 33 875 894 1293
596197 71 90 CTGCAGGAGACTACGACGCA 36 877 896 1294
596198 73 92 CGCTGCAGGAGACTACGACG 23 879 898 1295
596199 91 110 TGCAACGGAAACCCCAGACG 21 897 916 1296
596200 93 112 ACTGCAACGGAAACCCCAGA 43 899 918 1297
596201 97 116 GAGGACTGCAACGGAAACCC 24 903 922 1298
596202 99 118 CCGAGGACTGCAACGGAAAC 29 905 924 1299
596203 101 120 TTCCGAGGACTGCAACGGAA 5 907 926 1300
150438 103 122 GGTTCCGAGGACTGCAACGG 35 909 928 110
345716 105 124 CTGGTTCCGAGGACTGCAAC 51 911 930 1301
150439 107 126 TCCTGGTTCCGAGGACTGCA 24 913 932 111
596204 109 128 GGTCCTGGTTCCGAGGACTG 14 915 934 1302
150440 111 130 GAGGTCCTGGTTCCGAGGAC 31 917 936 112
596205 113 132 CCGAGGTCCTGGTTCCGAGG 18 919 938 1303
345718 115 134 CGCCGAGGTCCTGGTTCCGA 24 921 940 1304
596206 117 136 CACGCCGAGGTCCTGGTTCC 23 923 942 1305
596207 119 138 GCCACGCCGAGGTCCTGGTT 38 925 944 1306
596208 123 142 CTAGGCCACGCCGAGGTCCT 39 929 948 1307
345720 125 144 CGCTAGGCCACGCCGAGGTC 52 931 950 1308
596209 127 146 CTCGCTAGGCCACGCCGAGG 46 933 952 1309
596210 129 148 AACTCGCTAGGCCACGCCGA 44 935 954 1310
596211 131 150 ATAACTCGCTAGGCCACGCC 12 937 956 1311
596212 133 152 CCATAACTCGCTAGGCCACG 22 939 958 1312
345722 135 154 CGCCATAACTCGCTAGGCCA 59 941 960 1313
150442 137 156 GTCGCCATAACTCGCTAGGC 40 943 962 113
146143 157 176 TCAGCACGCACACGGCCTTC 52 963 982 114
195753 159 178 CTTCAGCACGCACACGGCCT 57 965 984 115
333607 161 180 CCCTTCAGCACGCACACGGC 37 967 986 116
333608 163 182 CGCCCTTCAGCACGCACACG 23 969 988 117
333611 167 186 CCGTCGCCCTTCAGCACGCA 67 973 992 21
596213 171 190 TGGGCCGTCGCCCTTCAGCA 12 977 996 1314
596214 173 192 ACTGGGCCGTCGCCCTTCAG 26 979 998 1315
596215 175 194 GCACTGGGCCGTCGCCCTTC 14 981 1000 1316
596216 177 196 CTGCACTGGGCCGTCGCCCT 24 983 1002 1317
596217 181 200 TGCCCTGCACTGGGCCGTCG 38 987 1006 1318
596218 183 202 GATGCCCTGCACTGGGCCGT 15 989 1008 1319
596219 185 204 ATGATGCCCTGCACTGGGCC 20 991 1010 1320
596220 189 208 ATTGATGATGCCCTGCACTG 8 995 1014 1321
596221 191 210 AAATTGATGATGCCCTGCAC 14 997 1016 1322
596222 193 212 CGAAATTGATGATGCCCTGC 32 999 1018 1323
596223 195 214 CTCGAAATTGATGATGCCCT 31 1001 1020 1324
596224 197 216 TGCTCGAAATTGATGATGCC 20 1003 1022 1325
596225 199 218 TCTGCTCGAAATTGATGATG 14 1005 1024 1326
596226 201 220 CTTCTGCTCGAAATTGATGA 11 1007 1026 1327
596227 240 259 TTTAATGCTTCCCCACACCT 15 4994 5013 1328
596228 242 261 CCTTTAATGCTTCCCCACAC 1 4996 5015 1329
596229 244 263 GTCCTTTAATGCTTCCCCAC 9 4998 5017 1330
Table 19
Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence Chemistry % inhibition SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
596530 164 180 eekkddddddddkkeee 74 970 986 1331
596721 164 180 eekkdddddddddkkee 81 970 986 1331
596531 165 181 eekkddddddddkkeee 75 971 987 1332
596722 165 181 eekkdddddddddkkee 60 971 987 1332
596532 166 182 eekkddddddddkkeee 67 972 988 1333
596723 166 182 eekkdddddddddkkee 73 972 988 1333
333611 167 186 eeeeeddddddddddeeeee 73 973 992 21
596720 167 183 eekkddddddddkkeee 56 973 989 966
596911 167 183 eekkdddddddddkkee 63 973 989 966
596533 168 184 eekkddddddddkkeee 60 974 990 967
596724 168 184 eekkdddddddddkkee 72 974 990 967
596534 169 185 eekkddddddddkkeee 52 975 991 968
596725 169 185 eekkdddddddddkkee 43 975 991 968
596535 170 186 eekkddddddddkkeee 71 976 992 969
596726 170 186 eekkdddddddddkkee 75 976 992 969
596536 171 187 eekkddddddddkkeee 64 977 993 970
596727 171 187 eekkdddddddddkkee 57 977 993 970
596537 577 593 eekkddddddddkkeee 48 9727 9743 1334
596728 577 593 eekkdddddddddkkee 46 9727 9743 1334
596538 578 594 eekkddddddddkkeee 27 9728 9744 1335
596729 578 594 eekkdddddddddkkee 45 9728 9744 1335
596539 579 595 eekkddddddddkkeee 56 9729 9745 1336
596730 579 595 eekkdddddddddkkee 63 9729 9745 1336
596540 580 596 eekkddddddddkkeee 60 9730 9746 1337
596731 580 596 eekkdddddddddkkee 63 9730 9746 1337
596541 581 597 eekkddddddddkkeee 46 9731 9747 1338
596732 581 597 eekkdddddddddkkee 63 9731 9747 1338
596542 582 598 eekkddddddddkkeee 62 9732 9748 1111
596733 582 598 eekkdddddddddkkee 56 9732 9748 1111
596543 583 599 eekkddddddddkkeee 58 9733 9749 1112
596734 583 599 eekkdddddddddkkee 61 9733 9749 1112
596544 584 600 eekkddddddddkkeee 66 9734 9750 1113
596735 584 600 eekkdddddddddkkee 73 9734 9750 1113
596545 585 601 eekkddddddddkkeee 63 9735 9751 1114
596736 585 601 eekkdddddddddkkee 74 9735 9751 1114
596546 588 604 eekkddddddddkkeee 41 9738 9754 1115
596737 588 604 eekkdddddddddkkee 58 9738 9754 1115
596547 589 605 eekkddddddddkkeee 57 9739 9755 1116
596738 589 605 eekkdddddddddkkee 59 9739 9755 1116
596548 590 606 eekkddddddddkkeee 31 9740 9756 1117
596739 590 606 eekkdddddddddkkee 58 9740 9756 1117
596549 591 607 eekkddddddddkkeee 33 9741 9757 1118
596740 591 607 eekkdddddddddkkee 66 9741 9757 1118
596550 592 608 eekkddddddddkkeee 30 9742 9758 1119
596741 592 608 eekkdddddddddkkee 30 9742 9758 1119
596551 593 609 eekkddddddddkkeee 19 9743 9759 1120
596742 593 609 eekkdddddddddkkee 46 9743 9759 1120
596552 594 610 eekkddddddddkkeee 14 9744 9760 1121
596743 594 610 eekkdddddddddkkee 5 9744 9760 1121
596553 595 611 eekkddddddddkkeee 2 9745 9761 1122
596744 595 611 eekkdddddddddkkee 23 9745 9761 1122
596554 596 612 eekkddddddddkkeee 19 9746 9762 1123
596745 596 612 eekkdddddddddkkee 6 9746 9762 1123
596555 597 613 eekkddddddddkkeee 41 9747 9763 1124
596746 597 613 eekkdddddddddkkee 41 9747 9763 1124
596556 598 614 eekkddddddddkkeee 34 9748 9764 1125
596747 598 614 eekkdddddddddkkee 46 9748 9764 1125
596557 599 615 eekkddddddddkkeee 54 9749 9765 1126
596748 599 615 eekkdddddddddkkee 68 9749 9765 1126
596558 600 616 eekkddddddddkkeee 50 9750 9766 1127
596749 600 616 eekkdddddddddkkee 47 9750 9766 1127
596559 601 617 eekkddddddddkkeee 76 9751 9767 1128
596750 601 617 eekkdddddddddkkee 64 9751 9767 1128
596560 602 618 eekkddddddddkkeee 61 9752 9768 1129
596751 602 618 eekkdddddddddkkee 64 9752 9768 1129
596561 603 619 eekkddddddddkkeee 47 9753 9769 1130
596752 603 619 eekkdddddddddkkee 65 9753 9769 1130
596562 604 620 eekkddddddddkkeee 37 9754 9770 1131
596753 604 620 eekkdddddddddkkee 58 9754 9770 1131
596563 608 624 eekkddddddddkkeee 43 9758 9774 1133
596754 608 624 eekkdddddddddkkee 38 9758 9774 1133
596564 609 625 eekkddddddddkkeee 57 9759 9775 1134
596755 609 625 eekkdddddddddkkee 52 9759 9775 1134
596565 610 626 eekkddddddddkkeee 27 9760 9776 1135
596756 610 626 eekkdddddddddkkee 57 9760 9776 1135
596566 611 627 eekkddddddddkkeee 35 9761 9777 1136
596757 611 627 eekkdddddddddkkee 39 9761 9777 1136
596567 616 632 eekkddddddddkkeee 42 9766 9782 1141
596758 616 632 eekkdddddddddkkee 48 9766 9782 1141
Table 20
Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence Chemistry % inhibition SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 eeeeeddddddddddeeeee 64 973 992 21
596720 167 183 eekkddddddddkkeee 56 973 989 966
596911 167 183 eekkdddddddddkkee 60 973 989 966
596568 617 633 eekkddddddddkkeee 50 9767 9783 1142
596759 617 633 eekkdddddddddkkee 57 9767 9783 1142
596569 618 634 eekkddddddddkkeee 53 9768 9784 1143
596760 618 634 eekkdddddddddkkee 55 9768 9784 1143
596570 619 635 eekkddddddddkkeee 81 9769 9785 1144
596761 619 635 eekkdddddddddkkee 78 9769 9785 1144
596571 620 636 eekkddddddddkkeee 79 9770 9786 1145
596762 620 636 eekkdddddddddkkee 78 9770 9786 1145
596572 621 637 eekkddddddddkkeee 85 9771 9787 1146
596763 621 637 eekkdddddddddkkee 76 9771 9787 1146
596573 622 638 eekkddddddddkkeee 73 9772 9788 1147
596764 622 638 eekkdddddddddkkee 87 9772 9788 1147
596574 623 639 eekkddddddddkkeee 69 9773 9789 1148
596765 623 639 eekkdddddddddkkee 82 9773 9789 1148
596575 624 640 eekkddddddddkkeee 70 9774 9790 1149
596766 624 640 eekkdddddddddkkee 76 9774 9790 1149
596576 625 641 eekkddddddddkkeee 55 9775 9791 1150
596767 625 641 eekkdddddddddkkee 58 9775 9791 1150
596577 640 656 eekkddddddddkkeee 73 9790 9806 1339
596768 640 656 eekkdddddddddkkee 86 9790 9806 1339
596578 641 657 eekkddddddddkkeee 68 9791 9807 1340
596769 641 657 eekkdddddddddkkee 80 9791 9807 1340
596579 642 658 eekkddddddddkkeee 27 9792 9808 1341
596770 642 658 eekkdddddddddkkee 42 9792 9808 1341
596580 643 659 eekkddddddddkkeee 41 9793 9809 1151
596771 643 659 eekkdddddddddkkee 28 9793 9809 1151
596581 644 660 eekkddddddddkkeee 63 9794 9810 1152
596772 644 660 eekkdddddddddkkee 63 9794 9810 1152
596582 645 661 eekkddddddddkkeee 84 9795 9811 1153
596773 645 661 eekkdddddddddkkee 86 9795 9811 1153
596583 646 662 eekkddddddddkkeee 95 9796 9812 1154
596774 646 662 eekkdddddddddkkee 96 9796 9812 1154
596584 647 663 eekkddddddddkkeee 79 9797 9813 1155
596775 647 663 eekkdddddddddkkee 86 9797 9813 1155
596585 651 667 eekkddddddddkkeee 19 9801 9817 1159
596776 651 667 eekkdddddddddkkee 43 9801 9817 1159
596586 652 668 eekkddddddddkkeee 57 9802 9818 1160
596777 652 668 eekkdddddddddkkee 54 9802 9818 1160
596587 653 669 eekkddddddddkkeee 71 9803 9819 1161
596778 653 669 eekkdddddddddkkee 61 9803 9819 1161
596588 654 670 eekkddddddddkkeee 79 9804 9820 1162
596779 654 670 eekkdddddddddkkee 83 9804 9820 1162
596589 655 671 eekkddddddddkkeee 85 9805 9821 1163
596780 655 671 eekkdddddddddkkee 86 9805 9821 1163
596590 656 672 eekkddddddddkkeee 87 9806 9822 1164
596781 656 672 eekkdddddddddkkee 91 9806 9822 1164
596591 657 673 eekkddddddddkkeee 75 9807 9823 1165
596782 657 673 eekkdddddddddkkee 83 9807 9823 1165
596592 658 674 eekkddddddddkkeee 74 9808 9824 1166
596783 658 674 eekkdddddddddkkee 79 9808 9824 1166
596593 659 675 eekkddddddddkkeee 76 9809 9825 1167
596784 659 675 eekkdddddddddkkee 84 9809 9825 1167
596594 660 676 eekkddddddddkkeee 66 9810 9826 1168
596785 660 676 eekkdddddddddkkee 75 9810 9826 1168
596595 665 681 eekkddddddddkkeee 64 9815 9831 1171
596786 665 681 eekkdddddddddkkee 77 9815 9831 1171
596596 666 682 eekkddddddddkkeee 75 9816 9832 1342
596787 666 682 eekkdddddddddkkee 84 9816 9832 1342
596597 667 683 eekkddddddddkkeee 60 9817 9833 1343
596788 667 683 eekkdddddddddkkee 77 9817 9833 1343
596598 668 684 eekkddddddddkkeee 79 9818 9834 1344
596789 668 684 eekkdddddddddkkee 85 9818 9834 1344
596599 672 688 eekkddddddddkkeee 57 9822 9838 1345
596790 672 688 eekkdddddddddkkee 67 9822 9838 1345
596600 674 690 eekkddddddddkkeee 85 9824 9840 1346
596791 674 690 eekkdddddddddkkee 88 9824 9840 1346
596601 675 691 eekkddddddddkkeee 70 9825 9841 1347
596792 675 691 eekkdddddddddkkee 83 9825 9841 1347
596602 676 692 eekkddddddddkkeee 85 9826 9842 1348
596793 676 692 eekkdddddddddkkee 81 9826 9842 1348
596603 677 693 eekkddddddddkkeee 89 9827 9843 1349
596794 677 693 eekkdddddddddkkee 90 9827 9843 1349
596604 678 694 eekkddddddddkkeee 90 9828 9844 1350
596795 678 694 eekkdddddddddkkee 85 9828 9844 1350
596605 679 695 eekkddddddddkkeee 90 9829 9845 1351
596796 679 695 eekkdddddddddkkee 92 9829 9845 1351
Example 5: Inhibition of human SOD-1 in HepG2 cells by deoxy, MOE and cEt gapmers
Modified oligonucleotides were designed targeting an SOD-1 nucleic acid and were tested for their effects on SOD-1 mRNA in vitro. ISIS 333611, a 5-10-5 MOE gapmer, which was previously described in WO 2005/040180 , was included as a benchmark.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cultured HepG2 cells at a density of 20,000 cells per well were transfected using electroporation with 5,000 nM modified oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR.
Human primer probe set RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. 'n.d.' indicates that inhibition levels were not measured.
The newly designed modified oligonucleotides in the Tables below were designed as deoxy, MOE, and cEt gapmers. The gapmers are 17 nucleosides in length wherein each nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety. The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar. The internucleoside linkages throughout each gapmer are phosphorothioate linkages. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). 'n/a' indicates that the modified oligonucleotide does not target that particular gene sequence with 100% complementarity. Table 21
Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO:1 Start Site SEQ ID NO:1 Stop Site Sequence Chemistry % inhibition SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 eeeeeddddddddddeeeee 71 973 992 21
596720 167 183 eekkddddddddkkeee 53 973 989 966
596911 167 183 eekkdddddddddkkee 61 973 989 966
596606 681 697 eekkddddddddkkeee 87 9831 9847 1352
596797 681 697 eekkdddddddddkkee 92 9831 9847 1352
596607 683 699 eekkddddddddkkeee 86 9833 9849 1172
596798 683 699 eekkdddddddddkkee 86 9833 9849 1172
596608 684 700 eekkddddddddkkeee 88 9834 9850 1173
596799 684 700 eekkdddddddddkkee 80 9834 9850 1173
596609 685 701 eekkddddddddkkeee 77 9835 9851 1174
596800 685 701 eekkdddddddddkkee 85 9835 9851 1174
596610 686 702 eekkddddddddkkeee 83 9836 9852 1175
596801 686 702 eekkdddddddddkkee 84 9836 9852 1175
596611 690 706 eekkddddddddkkeee 54 9840 9856 1179
596802 690 706 eekkdddddddddkkee 61 9840 9856 1179
596612 691 707 eekkddddddddkkeee 68 9841 9857 1180
596803 691 707 eekkdddddddddkkee 63 9841 9857 1180
596613 697 713 eekkddddddddkkeee 62 9847 9863 1353
596804 697 713 eekkdddddddddkkee 53 9847 9863 1353
596614 699 715 eekkddddddddkkeee 37 9849 9865 1354
596805 699 715 eekkdddddddddkkee 49 9849 9865 1354
596615 710 726 eekkddddddddkkeee 28 9860 9876 1355
596806 710 726 eekkdddddddddkkee 39 9860 9876 1355
596616 711 727 eekkddddddddkkeee 28 9861 9877 1356
596807 711 727 eekkdddddddddkkee 35 9861 9877 1356
596617 713 729 eekkddddddddkkeee 41 9863 9879 1357
596808 713 729 eekkdddddddddkkee 37 9863 9879 1357
596618 737 753 eekkddddddddkkeee 35 9887 9903 1358
596809 737 753 eekkdddddddddkkee 42 9887 9903 1358
596619 739 755 eekkddddddddkkeee 14 9889 9905 1359
596810 739 755 eekkdddddddddkkee 20 9889 9905 1359
596620 740 756 eekkddddddddkkeee 23 9890 9906 1360
596811 740 756 eekkdddddddddkkee 26 9890 9906 1360
596621 741 757 eekkddddddddkkeee 2 9891 9907 1361
596812 741 757 eekkdddddddddkkee 16 9891 9907 1361
596622 743 759 eekkddddddddkkeee 27 9893 9909 1362
596813 743 759 eekkdddddddddkkee 38 9893 9909 1362
596623 744 760 eekkddddddddkkeee 27 9894 9910 1363
596814 744 760 eekkdddddddddkkee 35 9894 9910 1363
596624 745 761 eekkddddddddkkeee 40 9895 9911 1364
596815 745 761 eekkdddddddddkkee 54 9895 9911 1364
596625 746 762 eekkddddddddkkeee 42 9896 9912 1365
596816 746 762 eekkdddddddddkkee 46 9896 9912 1365
596626 747 763 eekkddddddddkkeee 26 9897 9913 1366
596817 747 763 eekkdddddddddkkee 37 9897 9913 1366
596627 748 764 eekkddddddddkkeee 35 9898 9914 1367
596818 748 764 eekkdddddddddkkee 45 9898 9914 1367
596628 749 765 eekkddddddddkkeee 25 9899 9915 1368
596819 749 765 eekkdddddddddkkee 38 9899 9915 1368
596629 750 766 eekkddddddddkkeee 33 9900 9916 1369
596820 750 766 eekkdddddddddkkee 50 9900 9916 1369
596630 751 767 eekkddddddddkkeee 38 9901 9917 1370
596821 751 767 eekkdddddddddkkee 38 9901 9917 1370
596631 752 768 eekkddddddddkkeee 25 9902 9918 1371
596822 752 768 eekkdddddddddkkee 43 9902 9918 1371
596632 753 769 eekkddddddddkkeee 31 9903 9919 1372
596823 753 769 eekkdddddddddkkee 44 9903 9919 1372
596633 754 770 eekkddddddddkkeee 34 9904 9920 1373
596824 754 770 eekkdddddddddkkee 53 9904 9920 1373
596634 761 777 eekkddddddddkkeee 34 9911 9927 1374
596825 761 777 eekkdddddddddkkee 38 9911 9927 1374
596635 762 778 eekkddddddddkkeee 49 9912 9928 1375
596826 762 778 eekkdddddddddkkee 38 9912 9928 1375
596636 763 779 eekkddddddddkkeee 33 9913 9929 1376
596827 763 779 eekkdddddddddkkee 48 9913 9929 1376
596637 764 780 eekkddddddddkkeee 23 9914 9930 1377
596828 764 780 eekkdddddddddkkee 32 9914 9930 1377
596638 766 782 eekkddddddddkkeee 47 9916 9932 1378
596829 766 782 eekkdddddddddkkee 29 9916 9932 1378
596639 767 783 eekkddddddddkkeee 40 9917 9933 1379
596830 767 783 eekkdddddddddkkee 48 9917 9933 1379
596640 768 784 eekkddddddddkkeee 42 9918 9934 1380
596831 768 784 eekkdddddddddkkee 39 9918 9934 1380
596641 770 786 eekkddddddddkkeee 40 9920 9936 1381
596832 770 786 eekkdddddddddkkee 54 9920 9936 1381
596642 771 787 eekkddddddddkkeee 33 9921 9937 1382
596833 771 787 eekkdddddddddkkee 43 9921 9937 1382
596643 772 788 eekkddddddddkkeee 38 9922 9938 1184
596834 772 788 eekkdddddddddkkee 38 9922 9938 1184
Table 22
Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence Chemistry % inhibition SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 eeeeeddddddddddeeeee 62 973 992 21
596720 167 183 eekkddddddddkkeee 53 973 989 966
596911 167 183 eekkdddddddddkkee 58 973 989 966
596644 773 789 eekkddddddddkkeee 19 9923 9939 1185
596835 773 789 eekkdddddddddkkee 38 9923 9939 1185
596645 774 790 eekkddddddddkkeee 46 9924 9940 1186
596836 774 790 eekkdddddddddkkee 48 9924 9940 1186
596646 782 798 eekkddddddddkkeee 60 9932 9948 1193
596837 782 798 eekkdddddddddkkee 63 9932 9948 1193
596647 783 799 eekkddddddddkkeee 55 9933 9949 1194
596838 783 799 eekkdddddddddkkee 55 9933 9949 1194
596648 806 822 eekkddddddddkkeee 46 9956 9972 1383
596839 806 822 eekkdddddddddkkee 53 9956 9972 1383
596649 817 833 eekkddddddddkkeee 2 9967 9983 1201
596840 817 833 eekkdddddddddkkee 15 9967 9983 1201
596650 819 835 eekkddddddddkkeee 40 9969 9985 1203
596841 819 835 eekkdddddddddkkee 44 9969 9985 1203
596651 822 838 eekkddddddddkkeee 26 9972 9988 1206
596842 822 838 eekkdddddddddkkee 38 9972 9988 1206
596652 823 839 eekkddddddddkkeee 33 9973 9989 1207
596843 823 839 eekkdddddddddkkee 22 9973 9989 1207
596653 825 841 eekkddddddddkkeee 28 9975 9991 1209
596844 825 841 eekkdddddddddkkee 47 9975 9991 1209
596654 827 843 eekkddddddddkkeee 44 9977 9993 1211
596845 827 843 eekkdddddddddkkee 56 9977 9993 1211
596655 830 846 eekkddddddddkkeee 33 9980 9996 1214
596846 830 846 eekkdddddddddkkee 43 9980 9996 1214
596656 831 847 eekkddddddddkkeee 25 9981 9997 1215
596847 831 847 eekkdddddddddkkee 53 9981 9997 1215
596657 833 849 eekkddddddddkkeee 30 9983 9999 1217
596848 833 849 eekkdddddddddkkee 38 9983 9999 1217
596658 836 852 eekkddddddddkkeee 24 9986 10002 1220
596849 836 852 eekkdddddddddkkee 46 9986 10002 1220
596659 837 853 eekkddddddddkkeee 27 9987 10003 1221
596850 837 853 eekkdddddddddkkee 42 9987 10003 1221
596660 840 856 eekkddddddddkkeee 19 9990 10006 1384
596851 840 856 eekkdddddddddkkee 35 9990 10006 1384
596661 841 857 eekkddddddddkkeee 52 9991 10007 1385
596852 841 857 eekkdddddddddkkee 52 9991 10007 1385
596662 842 858 eekkddddddddkkeee 54 9992 10008 1386
596853 842 858 eekkdddddddddkkee 69 9992 10008 1386
596663 843 859 eekkddddddddkkeee 45 9993 10009 1387
596854 843 859 eekkdddddddddkkee 58 9993 10009 1387
596664 844 860 eekkddddddddkkeee n.d. 9994 10010 1388
596855 844 860 eekkdddddddddkkee 61 9994 10010 1388
596665 845 861 eekkddddddddkkeee 49 9995 10011 1389
596856 845 861 eekkdddddddddkkee 49 9995 10011 1389
596666 846 862 eekkddddddddkkeee 35 9996 10012 1390
596857 846 862 eekkdddddddddkkee 37 9996 10012 1390
596667 847 863 eekkddddddddkkeee 42 9997 10013 1391
596858 847 863 eekkdddddddddkkee 48 9997 10013 1391
596668 848 864 eekkddddddddkkeee 46 9998 10014 1392
596859 848 864 eekkdddddddddkkee 47 9998 10014 1392
596669 849 865 eekkddddddddkkeee 49 9999 10015 1393
596860 849 865 eekkdddddddddkkee 49 9999 10015 1393
596670 850 866 eekkddddddddkkeee 33 10000 10016 1394
596861 850 866 eekkdddddddddkkee 44 10000 10016 1394
596671 851 867 eekkddddddddkkeee 29 10001 10017 1395
596862 851 867 eekkdddddddddkkee 45 10001 10017 1395
596672 854 870 eekkddddddddkkeee 25 10004 10020 1223
596863 854 870 eekkdddddddddkkee 28 10004 10020 1223
596673 855 871 eekkddddddddkkeee 28 10005 10021 1224
596864 855 871 eekkdddddddddkkee 26 10005 10021 1224
596674 858 874 eekkddddddddkkeee 29 10008 10024 1227
596865 858 874 eekkdddddddddkkee 43 10008 10024 1227
596675 859 875 eekkddddddddkkeee 54 10009 10025 1228
596866 859 875 eekkdddddddddkkee 59 10009 10025 1228
596676 860 876 eekkddddddddkkeee 52 10010 10026 1229
596867 860 876 eekkdddddddddkkee 62 10010 10026 1229
596677 861 877 eekkddddddddkkeee 58 10011 10027 1230
596868 861 877 eekkdddddddddkkee 61 10011 10027 1230
596678 862 878 eekkddddddddkkeee 54 10012 10028 1231
596869 862 878 eekkdddddddddkkee 59 10012 10028 1231
596679 863 879 eekkddddddddkkeee 43 10013 10029 1232
596870 863 879 eekkdddddddddkkee 52 10013 10029 1232
596680 864 880 eekkddddddddkkeee 30 10014 10030 1233
596871 864 880 eekkdddddddddkkee 36 10014 10030 1233
596681 865 881 eekkddddddddkkeee 33 10015 10031 1234
596872 865 881 eekkdddddddddkkee 20 10015 10031 1234
Table 23
Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence Chemistry % inhibition SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
333611 167 186 eeeeeddddddddddeeeee 68 973 992 21
596720 167 183 eekkddddddddkkeee 64 973 989 966
596911 167 183 eekkdddddddddkkee 71 973 989 966
596682 884 900 eekkddddddddkkeee 24 10034 10050 1396
596873 884 900 eekkdddddddddkkee 32 10034 10050 1396
596683 885 901 eekkddddddddkkeee 54 10035 10051 1397
596874 885 901 eekkdddddddddkkee 44 10035 10051 1397
596684 889 905 eekkddddddddkkeee 34 10039 10055 1398
596875 889 905 eekkdddddddddkkee 47 10039 10055 1398
596685 890 906 eekkddddddddkkeee 28 10040 10056 1399
596876 890 906 eekkdddddddddkkee 46 10040 10056 1399
596686 891 907 eekkddddddddkkeee 20 10041 10057 1242
596877 891 907 eekkdddddddddkkee 16 10041 10057 1242
596687 892 908 eekkddddddddkkeee 19 10042 10058 1243
596878 892 908 eekkdddddddddkkee 29 10042 10058 1243
596688 893 909 eekkddddddddkkeee 24 10043 10059 1244
596879 893 909 eekkdddddddddkkee 11 10043 10059 1244
596689 894 910 eekkddddddddkkeee 26 10044 10060 1245
596880 894 910 eekkdddddddddkkee 30 10044 10060 1245
596690 895 911 eekkddddddddkkeee 44 10045 10061 1246
596881 895 911 eekkdddddddddkkee 55 10045 10061 1246
596691 896 912 eekkddddddddkkeee 43 10046 10062 1247
596882 896 912 eekkdddddddddkkee 48 10046 10062 1247
596692 899 915 eekkddddddddkkeee 38 10049 10065 1250
596883 899 915 eekkdddddddddkkee 57 10049 10065 1250
596693 903 919 eekkddddddddkkeee 29 10053 10069 1254
596884 903 919 eekkdddddddddkkee 47 10053 10069 1254
596694 904 920 eekkddddddddkkeee 13 10054 10070 1255
596885 904 920 eekkdddddddddkkee 31 10054 10070 1255
596695 907 923 eekkddddddddkkeee 13 10057 10073 1258
596886 907 923 eekkdddddddddkkee 34 10057 10073 1258
596696 908 924 eekkddddddddkkeee 13 10058 10074 1259
596887 908 924 eekkdddddddddkkee 26 10058 10074 1259
596697 909 925 eekkddddddddkkeee 21 10059 10075 1260
596888 909 925 eekkdddddddddkkee 22 10059 10075 1260
596698 910 926 eekkddddddddkkeee 20 10060 10076 1261
596889 910 926 eekkdddddddddkkee 28 10060 10076 1261
596699 911 927 eekkddddddddkkeee 20 10061 10077 1262
596890 911 927 eekkdddddddddkkee 27 10061 10077 1262
596700 912 928 eekkddddddddkkeee 15 10062 10078 1400
596891 912 928 eekkdddddddddkkee 21 10062 10078 1400
596701 913 929 eekkddddddddkkeee 26 10063 10079 1401
596892 913 929 eekkdddddddddkkee 35 10063 10079 1401
596702 914 930 eekkddddddddkkeee 36 10064 10080 1402
596893 914 930 eekkdddddddddkkee 46 10064 10080 1402
596703 915 931 eekkddddddddkkeee 40 10065 10081 1403
596894 915 931 eekkdddddddddkkee 36 10065 10081 1403
596704 916 932 eekkddddddddkkeee 22 10066 10082 1404
596895 916 932 eekkdddddddddkkee 30 10066 10082 1404
596705 917 933 eekkddddddddkkeee 27 10067 10083 1405
596896 917 933 eekkdddddddddkkee 27 10067 10083 1405
596706 918 934 eekkddddddddkkeee 32 10068 10084 1406
596897 918 934 eekkdddddddddkkee 34 10068 10084 1406
596707 919 935 eekkddddddddkkeee 28 10069 10085 1407
596898 919 935 eekkdddddddddkkee 34 10069 10085 1407
596708 920 936 eekkddddddddkkeee 30 10070 10086 1408
596899 920 936 eekkdddddddddkkee 44 10070 10086 1408
596709 921 937 eekkddddddddkkeee 29 10071 10087 1409
596900 921 937 eekkdddddddddkkee 31 10071 10087 1409
596710 922 938 eekkddddddddkkeee 41 10072 10088 1410
596901 922 938 eekkdddddddddkkee 33 10072 10088 1410
596711 923 939 eekkddddddddkkeee 16 10073 10089 1411
596902 923 939 eekkdddddddddkkee 11 10073 10089 1411
596712 924 940 eekkddddddddkkeee 11 10074 10090 1412
596903 924 940 eekkdddddddddkkee 27 10074 10090 1412
596713 925 941 eekkddddddddkkeee 20 10075 10091 1413
596904 925 941 eekkdddddddddkkee 27 10075 10091 1413
596714 926 942 eekkddddddddkkeee 20 10076 10092 1414
596905 926 942 eekkdddddddddkkee 25 10076 10092 1414
596715 931 947 eekkddddddddkkeee 45 10081 10097 1415
596906 931 947 eekkdddddddddkkee 34 10081 10097 1415
596716 932 948 eekkddddddddkkeee 52 10082 10098 1416
596907 932 948 eekkdddddddddkkee 56 10082 10098 1416
596717 936 952 eekkddddddddkkeee 14 10086 10102 1417
596908 936 952 eekkdddddddddkkee 19 10086 10102 1417
596718 938 954 eekkddddddddkkeee 23 10088 10104 1263
596909 938 954 eekkdddddddddkkee 8 10088 10104 1263
596719 949 965 eekkddddddddkkeee 31 10099 10115 1418
596910 949 965 eekkdddddddddkkee 16 10099 10115 1418
Example 6: Dose-dependent inhibition of human SOD-1 with modified oligonucleotides in HepG2 cells
Gapmers from the studies described above exhibiting significant in vitro inhibition of SOD-1 mRNA were selected and tested at various doses in HepG2 cells. Benchmark compound ISIS 333611 and other compounds previously disclosed in WO 2005/040180 , including ISIS 146144, 146145, 150445, 150446, 150447, 150454, 150463, 150465, 333606, 333609, and 333611 were also tested.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 20,000 cells per well and transfected using electroporation with 0.813 µM, 1.625 µM, 3.250 µM, 6.500 µM, and 13.000 µM concentrations of modified oligonucleotide, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe set RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells.
The half maximal inhibitory concentration (IC50) of each oligonucleotide is also presented. SOD-1 mRNA levels were significantly reduced in a dose-dependent manner in modified oligonucleotide treated cells. Table 24
ISIS No 0.813 µM 1.625 µM 3.250 µM 6.500 µM 13.000 µM
150445 7 21 44 56 82 4.4
150446 15 32 47 71 87 3.2
150447 26 43 68 81 93 2.0
150463 16 38 51 66 85 3.1
333611 18 39 57 66 79 3.0
393336 18 34 53 69 83 3.1
393343 24 32 53 73 42 5.1
436863 18 42 58 72 89 2.6
590089 28 59 70 82 90 1.5
590090 34 56 76 82 51 1.1
590091 30 44 68 84 88 1.9
590094 16 35 57 73 76 3.0
590113 34 35 57 73 84 2.3
Table 25
ISIS No 0.813 µM 1.625 µM 3.250 µM 6.500 µM 13.000 µM
150465 42 59 77 82 87 1.0
333611 17 26 40 64 82 3.8
378879 14 35 63 72 86 2.8
393371 28 42 57 74 80 2.3
489520 28 44 64 72 84 2.2
590177 53 59 69 85 88 0.7
590178 40 53 71 73 87 1.3
590180 18 42 51 64 73 3.3
590187 34 51 68 80 92 1.6
590188 30 46 61 76 88 2.0
590189 37 49 68 78 88 1.6
590190 38 58 77 84 89 1.1
590191 29 56 71 77 84 1.6
590192 37 59 72 80 87 1.2
Table 26
ISIS No 0.813 µM 1.625 µM 3.250 µM 6.500 µM 13.000 µM
146144 15 58 67 78 64 2.2
146145 31 53 67 81 90 1.6
333606 11 39 62 75 91 2.7
333609 13 37 57 71 85 2.9
333611 14 30 53 68 86 3.2
590250 8 19 47 64 84 3.9
590626 61 72 84 84 87 0.2
592630 24 33 58 70 85 2.7
592631 19 48 59 74 88 2.3
592645 20 31 53 74 89 2.8
592649 14 32 56 69 82 3.2
Table 27
ISIS No 0.813 µM 1.625 µM 3.250 µM 6.500 µM 13.000 µM
150454 13 24 49 69 83 3.5
333611 28 28 53 68 82 3.0
489505 13 24 38 56 81 4.5
489516 25 16 39 61 79 4.3
592652 11 31 52 74 46 5.1
592714 8 25 45 69 82 3.8
592715 18 35 50 70 83 3.1
592762 44 66 74 81 89 0.8
592763 50 68 74 86 95 0.7
592764 26 43 48 76 87 2.5
592766 36 53 66 77 89 1.5
592767 25 31 54 70 79 2.9
592769 35 31 56 73 80 2.5
592771 34 43 58 70 80 2.2
Example 7: Dose-dependent inhibition of human SOD-1 with modified oligonucleotides in HepG2 cells
Gapmers from the studies described above exhibiting significant in vitro inhibition of SOD-1 mRNA were selected and tested at various doses in HepG2 cells. Benchmark compound, ISIS 333611, and ISIS 333625, both of which were previously disclosed in WO 2005/040180 were also tested.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 20,000 cells per well and transfected using electroporation with 0.148 µM, 0.444 µM, 1.330 µM, 4.000 µM, and 12.000 µM concentrations of modified oligonucleotide, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe sets RTS3898 or HTS90 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells.
The half maximal inhibitory concentration (IC50) of each oligonucleotide is also presented. SOD-1 mRNA levels were significantly reduced in a dose-dependent manner in modified oligonucleotide treated cells. Table 28
ISIS No 0.148 µM 0.444 µM 1.330 µM 4.000 µM 12.000 µM
333611 6 14 29 51 78 3.2
596911 8 12 23 54 74 3.6
596720 7 14 31 55 71 3.4
596800 44 60 75 84 82 0.2
596801 33 49 69 79 83 0.5
596610 16 44 65 78 84 0.8
596799 20 45 64 75 84 0.8
596609 17 54 65 75 81 0.7
596883 13 22 36 45 51 8.6
489523 16 40 62 78 90 0.9
590181 5 17 46 70 89 1.7
436868 10 35 47 69 82 1.4
596768 16 37 62 82 89 0.9
596775 36 50 66 83 89 0.4
Table 29
ISIS No 0.148 µM 0.444 µM 1.330 µM 4.000 µM 12.000 µM
333625 0 4 17 56 84 3.3
489532 54 70 78 86 96 0.1
590154 0 14 25 56 86 2.7
596173 0 5 25 63 92 2.4
596174 7 12 37 46 84 2.8
596178 2 16 40 68 82 2.1
596179 0 17 41 64 80 2.3
596308 0 5 22 56 80 3.3
596572 18 35 62 83 90 0.9
596589 10 45 61 77 91 0.9
596600 41 56 71 85 92 0.3
596602 14 51 74 86 95 0.6
596789 22 55 69 86 91 0.5
596795 16 43 64 82 93 0.8
Example 8: Dose-dependent inhibition of human SOD-1 with modified oligonucleotides in HepG2 cells
Gapmers from the studies described above exhibiting significant in vitro inhibition of SOD-1 mRNA were selected and tested at various doses in HepG2 cells. Benchmark compound, ISIS 333611, and additional compounds including, ISIS 146143, 150442, 195753, 333607, and 333608, were previously disclosed in WO 2005/040180 were also tested.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 20,000 cells per well and transfected using electroporation with 0.1875 µM, 0.7500 µM, 3.0000 µM, and 12.0000 µM concentrations of modified oligonucleotide, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe sets RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells.
The half maximal inhibitory concentration (IC50) of each oligonucleotide is also presented. SOD-1 mRNA levels were significantly reduced in a dose-dependent manner in modified oligonucleotide treated cells. Table 30
ISIS No 0.1875 µM 0.75 µM 3.00 µM 12.00 µM
333611 0 27 60 91 2
596572 38 65 87 96 0.3
596583 62 89 95 95 <0.1
596590 40 79 89 94 0.2
596602 40 75 92 98 0.2
596603 51 79 92 96 0.1
596604 48 78 91 95 0.1
596605 50 86 90 97 0.1
596764 11 67 89 94 0.7
596768 27 49 82 92 0.7
596773 32 62 89 98 0.4
596774 56 89 93 96 <0.1
596775 31 75 90 97 0.3
596780 24 71 85 98 0.5
596781 30 80 93 97 0.3
596791 38 74 89 95 0.3
596794 43 75 91 97 0.2
596795 28 66 91 98 0.4
596796 43 78 93 98 0.2
Table 31
ISIS No 0.1875 µM 0.75 µM 3.00 µM 12.00 µM
333611 0 15 68 95 2.1
596589 35 70 90 97 0.3
596789 38 71 89 97 0.3
596600 41 73 89 95 0.2
596582 30 71 87 95 0.4
596784 26 68 89 95 0.4
596787 44 67 89 94 0.2
596779 29 71 89 97 0.4
596792 37 63 83 95 0.4
596782 27 61 85 96 0.5
596765 34 59 87 95 0.4
596793 27 65 88 96 0.5
596570 25 60 84 91 0.6
596769 21 64 85 96 0.6
596783 10 57 84 94 0.9
596584 26 67 84 93 0.5
596571 37 71 81 92 0.3
596598 30 62 81 94 0.5
596588 11 64 87 95 0.7
Table 32
ISIS No 0.1875 µM 0.75 µM 3.00 µM 12.00 µM
146143 6 12 51 88 2.5
150442 10 21 39 90 2.5
195753 13 23 48 77 2.8
333607 17 26 59 83 1.9
333608 0 2 28 92 3.7
333611 0 13 52 91 2.4
596573 26 51 77 91 0.8
596577 32 55 78 93 0.6
596591 23 51 74 91 0.8
596592 18 48 66 86 1.1
596593 16 58 78 87 0.8
596596 4 49 72 87 1.3
596761 28 55 74 91 0.7
596762 0 47 75 90 1.3
596763 0 40 78 92 1.5
596766 4 50 68 86 1.3
596785 10 47 77 91 1.1
596786 0 45 75 97 1.3
596788 9 52 81 95 1
Table 33
ISIS No 0.1875 µM 0.75 µM 3.00 µM 12.00 µM
333611 3 22 60 92 2
596302 9 27 59 89 1.9
596308 29 47 82 96 0.7
596309 13 42 75 92 1.1
596310 13 16 48 81 2.8
596313 15 37 70 88 1.3
596314 18 45 74 92 1
596606 55 78 87 93 0.1
596607 44 71 83 84 0.2
596608 46 74 84 81 0.1
596609 30 61 79 87 0.5
596610 39 69 82 86 0.3
596612 16 50 62 77 1.4
596797 67 84 94 96 <0.1
596798 42 68 86 89 0.2
596799 35 66 83 87 0.4
596800 45 73 84 87 0.2
596801 40 67 86 88 0.3
596803 28 41 63 71 1.4
Table 34
ISIS No 0.1875 µM 0.75 µM 3.00 µM 12.00 µM
333611 0 30 56 69 3.1
590475 19 39 69 88 1.2
590625 19 51 74 85 1.0
590626 42 72 88 90 0.2
590627 16 42 70 84 1.0
590634 45 72 86 92 0.2
590635 39 60 80 90 0.4
590644 44 62 80 86 0.3
590650 34 56 82 93 0.5
590653 52 78 86 85 0.1
590655 35 71 79 82 0.3
596530 25 22 72 79 2.0
596531 8 38 74 96 1.2
596559 15 36 79 95 1.1
596721 14 47 82 97 0.9
596723 12 47 79 94 1.0
596726 24 42 80 94 0.9
596735 7 32 77 96 1.3
596736 25 52 82 97 0.7
Example 9: Dose-dependent inhibition of human SOD-1 in HepG2 cells by gapmers with mixed backbone chemistry
Additional gapmers were designed based on the sequences of the oligonucleotides disclosed in studies described above. The oligonucleotides were designed as 5-10-5 MOE, 5-8-5 MOE, and deoxy, MOE and cEt oligonucleotides. The 5-10-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of ten 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' direction comprising five nucleosides each. The 5-8-5 MOE gapmers are 18 nucleosides in length, wherein the central gap segment is comprised of eight 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' direction comprising five nucleosides each. Each nucleoside in the 5' wing segment and each nucleoside in the 3' wing segment has a 2'-MOE modification. The deoxy, MOE and cEt oligonucleotides are 16 or 17 nucleosides in length wherein each nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety. The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar. The internucleoside linkages throughout each gapmer are either phosphodiester or phosphorothioate linkages. The internucleoside linkages of each oligonucleotide are denoted in the Backbone Chemistry column, where 'o' indicates a phosphodiester linkage and 's' denotes a phosphorothioate linkage. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). Table 35
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence Sugar Modifications Backbone Chemistry SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
611458 226 245 eeeeeddddddddddeeeee sooosssssssssssooos 4980 4999 23
654335 233 248 ekddddddddekekee sossssssssoooss 4987 5002 1420
611474 234 253 eeeeeddddddddddeeeee sooosssssssssssooos 4988 5007 149
654301 234 251 eeeeeddddddddeeeee sooosssssssssooss 4988 5005 1421
654336 234 249 ekddddddddekekee sossssssssoooss 4988 5003 1422
654302 235 252 eeeeeddddddddeeeee sooosssssssssooss 4989 5006 1423
654319 235 250 kekeddddddddekek sooossssssssoss 4989 5004 1424
654337 235 250 ekddddddddekekee sossssssssoooss 4989 5004 1424
654303 236 253 eeeeeddddddddeeeee sooosssssssssooss 4990 5007 1425
654320 236 251 kekeddddddddekek sooossssssssoss 4990 5005 1426
654321 237 252 kekeddddddddekek sooossssssssoss 4991 5006 1427
611475 321 340 eeeeeddddddddddeeeee sooosssssssssssooos 7637 7656 172
611460 588 607 eeeeeddddddddddeeeee sooosssssssssssooos 9738 9757 47
654304 663 680 eeeeeddddddddeeeee sooosssssssssooss 9813 9830 1429
654305 664 681 eeeeeddddddddeeeee sooosssssssssooss 9814 9831 1430
654340 664 679 ekddddddddekekee sossssssssoooss 9814 9829 1431
611492 665 684 eeeeeddddddddddeeeee sooosssssssssssooos 9815 9834 725
654306 665 682 eeeeeddddddddeeeee sooosssssssssooss 9815 9832 1432
654323 665 680 kekeddddddddekek sooossssssssoss 9815 9830 1433
654341 665 680 ekddddddddekekee sossssssssoooss 9815 9830 1433
611500 666 685 eeeeeddddddddddeeeee sooosssssssssssooos 9816 9835 823
612941 666 682 eekkdddddddddkkee sooosssssssssoss 9816 9832 1342
654307 666 683 eeeeeddddddddeeeee sooosssssssssooss 9816 9833 1434
654324 666 681 kekeddddddddekek sooossssssssoss 9816 9831 1435
654342 666 681 ekddddddddekekee sossssssssoooss 9816 9831 1435
654308 667 684 eeeeeddddddddeeeee sooosssssssssooss 9817 9834 1436
612925 676 692 eekkddddddddkkeee soosssssssssooss 9826 9842 1348
612944 676 692 eekkdddddddddkkee sooosssssssssoss 9826 9842 1348
654343 677 692 ekddddddddekekee sossssssssoooss 9827 9842 1437
612927 678 694 eekkddddddddkkeee soosssssssssooss 9828 9844 1350
654309 678 695 eeeeeddddddddeeeee sooosssssssssooss 9828 9845 1438
612928 679 695 eekkddddddddkkeee soosssssssssooss 9829 9845 1351
654310 679 696 eeeeeddddddddeeeee sooosssssssssooss 9829 9846 1439
654311 680 697 eeeeeddddddddeeeee sooosssssssssooss 9830 9847 1440
654327 680 695 kekeddddddddekek sooossssssssoss 9830 9845 1441
654346 680 695 ekddddddddekekee sossssssssoooss 9830 9845 1441
611497 681 700 eeeeeddddddddddeeeee sooosssssssssssooos 9831 9850 733
612948 681 697 eekkdddddddddkkee sooosssssssssoss 9831 9847 1352
654312 681 698 eeeeeddddddddeeeee sooosssssssssooss 9831 9848 1442
654328 681 696 kekeddddddddekek sooossssssssoss 9831 9846 1443
654347 681 696 ekddddddddekekee sossssssssoooss 9831 9846 1443
654313 682 699 eeeeeddddddddeeeee sooosssssssssooss 9832 9849 1444
654329 682 697 kekeddddddddekek sooossssssssoss 9832 9847 1445
654348 682 697 ekddddddddekekee sossssssssoooss 9832 9847 1445
612949 683 699 eekkdddddddddkkee sooosssssssssoss 9833 9849 1172
654314 683 700 eeeeeddddddddeeeee sooosssssssssooss 9833 9850 1446
654330 683 698 kekeddddddddekek sooossssssssoss 9833 9848 1447
612931 684 700 eekkddddddddkkeee soosssssssssooss 9834 9850 1173
654315 684 701 eeeeeddddddddeeeee sooosssssssssooss 9834 9851 1448
654331 684 699 kekeddddddddekek sooossssssssoss 9834 9849 1449
654350 684 699 ekddddddddekekee sossssssssoooss 9834 9849 1449
654316 685 702 eeeeeddddddddeeeee sooosssssssssooss 9835 9852 1450
612918 686 702 eeekkdddddddkkeee soosssssssssooss 9836 9852 1175
612932 686 702 eekkddddddddkkeee soosssssssssooss 9836 9852 1175
654317 686 703 eeeeeddddddddeeeee sooosssssssssooss 9836 9853 1451
654333 686 701 kekeddddddddekek sooossssssssoss 9836 9851 1452
654352 686 701 ekddddddddekekee sossssssssoooss 9836 9851 1452
654318 687 704 eeeeeddddddddeeeee sooosssssssssooss 9837 9854 1453
654334 687 702 kekeddddddddekek sooossssssssoss 9837 9852 1454
The newly designed oligonucleotides were tested at various doses in HepG2 cells. The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 20,000 cells per well and transfected using electroporation with 0.222 µM, 0.667 µM, 2.000 µM, and 6.000 µM concentrations of modified oligonucleotide, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe sets RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells.
The half maximal inhibitory concentration (IC50) of each oligonucleotide is also presented. SOD-1 mRNA levels were significantly reduced in a dose-dependent manner in modified oligonucleotide treated cells. Table 36
ISIS No 0.222 µM 0.667 µM 2.000 µM 6.000 µM
333611 0 28 53 77 1.9
611458 0 21 50 79 2.0
611460 24 34 55 79 1.3
611474 14 32 55 79 1.5
611475 0 16 35 70 3.0
611492 38 70 88 95 0.3
611497 28 55 80 89 0.6
611500 25 50 73 92 0.7
612918 51 70 74 80 <0.2
612925 53 73 90 89 <0.2
612927 64 89 92 94 <0.2
612928 67 90 94 97 <0.2
612931 68 76 84 86 <0.2
612932 61 73 88 91 <0.2
612941 62 78 91 95 <0.2
612944 47 71 82 92 0.2
612948 76 90 93 94 <0.2
612949 58 68 83 96 <0.2
654301 7 4 17 42 >6.0
Table 37
ISIS No 0.222 µM 0.667 µM 2.000 µM 6.000 µM
333611 14 20 35 69 3.0
611458 11 27 36 68 2.9
654302 0 8 38 48 6.2
654303 8 29 46 76 1.9
654304 7 28 54 79 1.7
654305 28 59 73 85 0.6
654306 38 62 82 94 0.4
654307 9 43 65 86 1.1
654308 14 31 54 84 1.4
654309 0 17 47 72 2.4
654310 10 24 28 53 6.6
654311 45 73 78 87 0.2
654312 14 39 59 77 1.3
654313 20 43 56 81 1.2
654314 33 58 74 86 0.5
654315 21 47 64 84 0.9
654316 19 30 46 70 2.0
654317 13 46 57 70 1.4
654318 17 42 54 76 1.4
Table 38
ISIS No 0.222 µM 0.667 µM 2.000 µM 6.000 µM
333611 14 19 50 73 2.1
611458 9 22 39 72 2.5
654319 19 9 31 61 5.1
654320 6 16 20 59 5.9
654321 8 14 51 76 2.1
654323 55 73 89 95 <0.2
654324 54 78 89 96 <0.2
654327 53 82 91 96 <0.2
654328 73 90 93 97 <0.2
654329 58 78 86 94 <0.2
654330 42 54 69 86 0.4
654331 53 78 82 90 <0.2
654333 50 67 81 86 0.2
654334 55 68 78 88 <0.2
654335 15 31 58 81 1.4
654336 21 36 60 75 1.3
654337 16 34 58 80 1.4
654340 36 69 83 95 0.4
654341 43 58 79 91 0.3
Table 39
ISIS No 0.222 µM 0.667 µM 2.00 µM 6.00 µM
333611 0 6 38 64 3.6
611458 3 14 36 63 3.6
654342 40 60 80 93 0.4
654343 64 81 90 94 <0.2
654346 52 73 84 93 <0.2
654347 21 38 58 81 1.2
654348 44 63 82 94 0.3
654350 40 63 76 86 0.3
654352 54 79 84 88 <0.2
Example 10: Dose-dependent inhibition of human SOD-1 by gapmers with mixed backbone chemistry
Additional gapmers were designed based on the sequences of the oligonucleotides disclosed in studies described above. The oligonucleotides were designed as deoxy, MOE and cEt oligonucleotides. The deoxy, MOE and cEt oligonucleotides are 16 or 17 nucleosides in length wherein each nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety. The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar. The internucleoside linkages throughout each gapmer are either phosphodiester or phosphorothioate linkages. The internucleoside linkages of each oligonucleotide are denoted in the Backbone Chemistry column, where 'o' indicates a phosphodiester linkage and 's' indicates a phosphorothioate linkage. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). Table 40
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence Sugar Modifications Backbone Chemistry SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
612916 664 680 eeekkdddddddkkeee soosssssssssooss 9814 9830 1170
612947 679 695 eekkdddddddddkkee sooosssssssssoss 9829 9845 1351
654322 664 679 kekeddddddddekek sooossssssssoss 9814 9829 1431
654325 667 682 kekeddddddddekek sooossssssssoss 9817 9832 1455
654326 679 694 kekeddddddddekek sooossssssssoss 9829 9844 1456
654332 685 700 kekeddddddddekek sooossssssssoss 9835 9850 1457
654338 662 677 ekddddddddekekee sossssssssoooss 9812 9827 1458
654339 663 678 ekddddddddekekee sossssssssoooss 9813 9828 1459
654344 678 693 ekddddddddekekee sossssssssoooss 9828 9843 1460
654345 679 694 ekddddddddekekee sossssssssoooss 9829 9844 1456
654349 683 698 ekddddddddekekee sossssssssoooss 9833 9848 1447
654351 685 700 ekddddddddekekee sossssssssoooss 9835 9850 1457
The newly designed oligonucleotides were tested at various doses in A431 cells. The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 5,000 cells per well and modified oligonucleotides were added to the media at 0.12 µM, 0.60 µM, 3.00 µM, and 15.00 µM concentrations of modified oligonucleotide for free uptake by the cells, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe sets RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. Table 41
ISIS No 0.12 µM 0.60 µM 3.00 µM 15.00 µM
333611 0 7 17 31
611458 5 4 4 10
612916 4 13 26 37
612918 12 26 45 47
612944 1 4 21 29
612947 12 48 54 72
654305 7 15 39 52
654306 0 25 29 50
654313 1 15 36 50
654314 2 35 52 67
654321 0 8 8 18
654322 0 13 36 59
654329 7 7 41 66
654330 6 14 15 32
654337 0 0 7 21
654338 3 3 2 11
654345 1 9 22 46
654346 0 7 21 46
Table 42
ISIS No 0.12 µM 0.60 µM 3.00 µM 15.00 µM
333611 0 0 0 2
611460 0 0 0 30
611474 0 0 11 0
612925 2 4 12 52
612927 0 38 54 68
612948 25 69 89 95
612949 22 57 73 84
654307 42 23 26 45
654308 2 31 9 18
654315 0 8 39 52
654316 0 18 26 45
654323 15 14 16 52
654324 12 22 21 34
654331 7 35 66 78
654332 2 31 47 61
654339 1 27 32 47
654340 37 0 22 12
654347 20 5 12 33
654348 2 19 33 62
Table 43
ISIS No 0.12 µM 0.60 µM 3.00 µM 15.00 µM
333611 0 0 0 1
611475 0 17 0 16
611492 13 24 41 62
612928 12 36 49 72
612931 31 68 83 86
654301 2 0 0 9
654302 0 8 3 0
654309 18 7 11 9
654310 13 19 22 7
654317 3 0 1 20
654318 4 0 33 17
654325 0 0 0 14
654326 0 15 17 48
654333 19 18 36 55
654334 0 0 0 6
654341 0 9 0 25
654342 0 0 0 18
654349 0 13 31 49
654350 10 32 66 79
Table 44
ISIS No 0.12 µM 0.60 µM 3.00 µM 15.00 µM
333611 5 0 7 3
611497 16 49 60 75
611500 9 8 21 49
612932 17 8 26 37
612941 4 12 36 51
654303 0 1 0 5
654304 9 10 27 43
654311 15 51 68 84
654312 6 26 29 33
654319 3 44 2 8
654320 4 12 5 12
654327 3 45 65 81
654328 15 44 73 85
654335 2 0 0 12
654336 0 0 0 0
654343 0 7 26 59
654344 10 30 51 72
654351 10 22 48 77
654352 8 26 57 76
Example 11: Dose-dependent inhibition of human SOD-1 by gapmers with mixed backbone chemistry
Additional gapmers were designed based on the sequences of the oligonucleotides disclosed in studies described above. The oligonucleotides were designed as 5-10-5 MOE gapmers, 4-8-5 MOE gapmers, 5-8-5 MOE gapmers, 5-8-7 MOE gapmers, 6-8-6 MOE gapmers, 6-9-5 MOE gapmers, or deoxy, MOE and cEt oligonucleotides.
The 5-10-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of ten 2'-deoxynucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five nucleosides each. The 4-8-5 MOE gapmers are 17 nucleosides in length, wherein the central gap segment is comprised of eight 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising four and five nucleosides respectively. The 5-8-5 MOE gapmers are 18 nucleosides in length, wherein the central gap segment is comprised of eight 2'-deoxynucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five nucleosides each. The 5-8-7 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of eight 2'-deoxynucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five and seven nucleosides respectively. The 6-8-6 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of eight 2'-deoxynucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising six nucleosides each. The 6-9-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of nine 2'-deoxynucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising six and five nucleosides respectively. Each nucleoside in the 5' wing segment and each nucleoside in the 3' wing segment has a 2'-MOE modification.
The deoxy, MOE and cEt oligonucleotides are 17 nucleosides in length wherein each nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety. The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar.
The internucleoside linkages throughout each gapmer are either phosphodiester or phosphorothioate linkages. The internucleoside linkages of each oligonucleotide are denoted in the Backbone Chemistry column, where 'o' indicates a phosphodiester linkage and 's' indicates a phosphorothioate linkage. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). Table 45
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence Motif Sugar Modifications Backbone Chemistry SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
666846 665 684 5-10-5 MOE eeeeeddddddddddeeeee soooossssssssssooss 9815 9834 725
666849 665 684 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooss 9815 9834 725
666853 665 684 5-10-5 MOE eeeeeddddddddddeeeee sososssssssssssosos 9815 9834 725
666859 679 695 Deoxy, MOE and cEt eeeeddddddddkkeee soosssssssssooss 9829 9845 1351
666861 679 695 Deoxy, MOE and cEt ekekddddddddeeeee soosssssssssooss 9829 9845 1351
666867 684 700 Deoxy, MOE and cEt eekkddddddddeeeee soosssssssssooss 9834 9850 1173
666869 684 700 Deoxy, MOE and cEt ekekddddddddkekee soosssssssssooss 9834 9850 1173
666870 684 700 Deoxy, MOE and cEt ekekddddddddeeeee soosssssssssooss 9834 9850 1173
666919 666 682 Deoxy, MOE and cEt eeeedddddddddkkee sooosssssssssoss 9816 9832 1342
666921 666 682 Deoxy, MOE and cEt eeeeeddddddddkkee sooosssssssssoss 9816 9832 1342
666922 666 682 Deoxy, MOE and cEt eeeekddddddddkeee sooosssssssssoss 9816 9832 1342
684059 676 692 Deoxy, MOE and cEt eeekddddddddkeeee soosssssssssooss 9826 9842 1348
684064 676 692 Deoxy, MOE and cEt eeeeddddddddkekee soosssssssssooss 9826 9842 1348
684068 676 692 4-8-5 MOE eeeeddddddddeeeee soosssssssssooss 9826 9842 1348
684087 590 607 5-8-5 MOE eeeeeddddddddeeeee sooosssssssssooss 9740 9757 613
684088 167 184 5-8-5 MOE eeeeeddddddddeeeee sooosssssssssooss 973 990 1419
684095 167 186 5-10-5 MOE eeeeeddddddddddeeeee soooossssssssssooss 973 992 21
684097 167 186 5-8-7 MOE eeeeeddddddddeeeeeee sooossssssssssoooss 973 992 21
684101 588 607 6-8-6 MOE eeeeeeddddddddeeeeee sooossssssssssoooss 9738 9757 47
684102 588 607 5-8-7 MOE eeeeeddddddddeeeeeee sooossssssssssoooss 9738 9757 47
684104 588 607 6-9-5 MOE eeeeeedddddddddeeeee soooossssssssssooss 9738 9757 47
The newly designed oligonucleotides were tested at various doses in A431 cells. The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 5,000 cells per well and modified oligonucleotides were added to the media at 0.062 µM, 0.185 µM, 0.556 µM, 1.667 µM, 5.000 µM, and 15.000 µM concentrations of modified oligonucleotide for free uptake by the cells, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe sets RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. Table 46
ISIS No 0.062 µM 0.185 µM 0.556 µM 1.667 µM 5.000 µM 15.000 µM
666846 18 28 45 70 69 81 0.8
666919 0 1 13 28 42 55 11.0
666849 33 29 52 62 74 82 0.6
666921 2 4 15 19 37 44 >15
666853 20 29 49 69 76 83 0.7
666922 8 7 30 33 66 59 4.1
666859 26 30 58 64 68 78 0.6
666861 6 21 44 76 68 77 1.1
666867 16 43 65 68 79 83 0.5
666869 52 68 79 88 89 91 <0.06
666870 24 37 57 77 81 86 0.4
Table 47
ISIS No 0.062 µM 0.185 µM 0.556 µM 1.667 µM 5.000 µM 15.000 µM
684059 7 18 38 53 68 79 1.5
684102 0 9 0 0 4 0 >15
684064 12 19 29 38 51 61 5.0
684104 0 0 0 0 0 4 >15
684068 0 4 10 33 50 56 8.0
684087 3 1 29 0 0 27 >15
684088 10 11 11 3 4 18 >15
684095 12 13 14 4 7 18 >15
684097 8 4 5 4 3 9 >15
684101 7 0 0 23 6 14 >15
The newly designed oligonucleotides were also tested at various doses in SH-SY5Y cells. The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 20,000 cells per well and modified oligonucleotides transfected using electroporation at 0.062 µM, 0.185 µM, 0.556 µM, 1.667 µM, 5.000 µM, and 15.000 µM concentrations of modified oligonucleotide, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe set RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. Table 48
ISIS No 0.062 µM 0.185 µM 0.556 µM 1.667 µM 5.000 µM 15.000 µM
666846 0 17 49 62 83 91 0.9
666919 10 3 23 35 77 78 2.2
666849 10 10 33 61 81 92 1.1
666921 0 0 12 30 56 68 4.8
666853 0 17 39 59 85 82 1.3
666922 9 0 12 33 65 76 3.2
666859 11 44 53 75 77 93 0.5
666861 0 0 34 61 81 90 1.4
666867 33 10 43 61 81 77 0.9
666869 38 49 61 83 81 84 0.2
666870 3 6 48 69 77 87 1.1
Table 49
ISIS No 0.062 µM 0.185 µM 0.556 µM 1.667 µM 5.000 µM 15.000 µM
684059 4 30 51 68 88 92 0.7
684102 5 2 16 25 36 61 12.0
684064 15 27 52 63 79 92 0.7
684104 0 3 20 38 61 84 2.6
684068 0 4 32 37 61 83 2.3
684087 0 3 21 31 47 66 5.8
684088 13 4 5 40 52 77 3.9
684095 16 5 19 36 68 80 2.4
684097 11 15 9 30 59 76 3.6
684101 0 0 8 23 49 66 6.6
Example 12: Inhibition of human SOD-1 in a transgenic rat model
Gapmers from the studies described above, including benchmark compound ISIS 333611, which was previously disclosed in WO 2005/040180 , were tested in an SOD-1 transgenic rat model (Taconic, Cat# 2148-F and 2148-M). These hemizygous rats express mutant human SOD-1 in the spinal cord.
Additional gapmers were designed based on the sequences of the oligonucleotides disclosed in studies described above. The oligonucleotides were designed as 5-9-5 MOE gapmers, 5-10-5 MOE gapmers or deoxy, MOE and cEt oligonucleotides. The 5-9-5 MOE gapmers are 19 nucleosides in length, wherein the central gap segment is comprised of nine 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five nucleosides each. The 5-10-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of ten 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five nucleosides each. Each nucleoside in the 5' wing segment and each nucleoside in the 3' wing segment has a 2'-MOE modification. The deoxy, MOE and cEt oligonucleotides are 17 nucleosides in length wherein each nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar. The internucleoside linkages throughout each gapmer are either phosphodiester or phosphorothioate linkages. The internucleoside linkages of each oligonucleotide is denoted in the Backbone Chemistry column, where 'o' indicates a phosphodiester linkage and 's' indicates a phosphorothioate linkage. All cytosine residues throughout each oligonucleotide are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Table below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). Table 50
ISIS NO SEQ ID NO: 1 Start Site SEQ ID NO: 1 Stop Site Sequence Motif Sugar Modifications Backbone Chemistry SEQ ID NO: 2 Start Site SEQ ID NO: 2 Stop Site SEQ ID NO
383872 167 186 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 973 992 21
611457 165 184 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 971 990 54
611464 164 183 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 970 989 67
611467 656 675 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 9806 9825 272
611468 583 602 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 9733 9752 227
611472 230 249 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 4984 5003 145
611473 231 250 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 4985 5004 146
611478 644 663 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 9794 9813 260
611479 645 664 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 9795 9814 261
611481 655 674 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 9805 9824 271
611484 660 679 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 9810 9829 276
611485 661 680 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 9811 9830 277
611488 124 143 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 930 949 593
611490 402 421 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 8457 8476 666
611494 671 690 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 9821 9840 728
611495 673 692 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 9823 9842 729
611498 569 588 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 9719 9738 816
611499 664 683 5-10-5 MOE eeeeeddddddddddeeeee sooosssssssssssooos 9814 9833 822
612912 621 637 Deoxy, MOE, and cEt eeekkdddddddkkeee soosssssssssooss 9771 9787 1146
612915 656 672 Deoxy, MOE, and cEt eeekkdddddddkkeee soo sssssssssooss 9806 9822 1164
612917 684 700 Deoxy, MOE, and cEt eeekkdddddddkkeee soosssssssssooss 9834 9850 1173
612919 621 637 Deoxy, MOE, and cEt eekkddddddddkkeee soosssssssssooss 9771 9787 1146
612923 656 672 Deoxy, MOE, and cEt eekkddddddddkkeee soo sssssssssooss 9806 9822 1164
612924 674 690 Deoxy, MOE, and cEt eekkddddddddkkeee soo sssssssssooss 9824 9840 1346
612934 170 186 Deoxy, MOE, and cEt eekkdddddddddkkee sooosssssssssoss 976 992 969
612935 585 601 Deoxy, MOE, and cEt eekkdddddddddkkee sooosssssssssoss 9735 9751 1114
612940 659 675 Deoxy, MOE, and cEt eekkdddddddddkkee sooosssssssssoss 9809 9825 1167
612942 668 684 Deoxy, MOE, and cEt eekkdddddddddkkee sooosssssssssoss 9818 9834 1344
612943 674 690 Deoxy, MOE, and cEt eekkdddddddddkkee sooosssssssssoss 9824 9840 1346
666854 665 681 5-9-5 MOE eeeeedddddddddeeeee sooossssssssssooss 9815 9831 1428
666855 666 682 5-9-5 MOE eeeeedddddddddeeeee sooossssssssssooss 9816 9832 1461
666857 679 695 Deoxy, MOE, and cEt eeekddddddddkeeee soosssssssssooss 9829 9845 1351
666858 679 695 Deoxy, MOE, and cEt eekkddddddddeeeee soosssssssssooss 9829 9845 1351
666864 679 695 Deoxy, MOE, and cEt kekeddddddddeeeee soosssssssssooss 9829 9845 1351
666865 679 695 Deoxy, MOE, and cEt eeeeddddddddekeke soosssssssssooss 9829 9845 1351
666866 684 700 Deoxy, MOE, and cEt eeekddddddddkeeee soosssssssssooss 9834 9850 1173
666908 686 702 Deoxy, MOE, and cEt eeeekdddddddkeeee sooossssssssooss 9836 9852 1175
666923 666 682 Deoxy, MOE, and cEt eeekddddddddkeeee sooossssssssooss 9816 9832 1342
The modified oligonucleotides were tested in a series of experiments that had similar conditions. The results for each experiment are presented in separate tables shown below. Rats were injected intrathecally with 30µL of a 16.67mg/ml solution of modified oligonucleotide diluted in PBS (500 µg final dose). A control group of rats was injected intrathecally with PBS. Inhibition levels of SOD-1 in the lumbar spinal cord, thoracic spinal cord and cervical spinal cord were assessed. The data is presented below and indicate that several modified oligonucleotides inhibited human SOD-1 levels in this model. Table 51
ISIS No Chemistry Lumbar Thoracic Cervical SEQ ID NO
333611 5-10-5 MOE with phosphorothioate backbone chemistry 51 51 47 21
383872 5-10-5 MOE with mixed backbone chemistry 29 36 26 21
611460 5-10-5 MOE with mixed backbone chemistry 55 53 25 1428
611464 5-10-5 MOE with mixed backbone chemistry 52 54 26 67
611468 5-10-5 MOE with mixed backbone chemistry 46 44 19 227
611481 5-10-5 MOE with mixed backbone chemistry 39 44 33 271
Table 52
ISIS No Chemistry Lumbar Thoracic Cervical SEQ ID NO
611473 5-10-5 MOE with mixed backbone chemistry 47 42 5 146
611474 5-10-5 MOE with mixed backbone chemistry 75 65 65 149
611479 5-10-5 MOE with mixed backbone chemistry 24 13 20 261
611484 5-10-5 MOE with mixed backbone chemistry 51 31 41 276
611485 5-10-5 MOE with mixed backbone chemistry 52 40 35 277
611492 5-10-5 MOE with mixed backbone chemistry 57 44 43 725
Table 53
ISIS No Chemistry Lumbar Thoracic Cervical SEQ ID NO
611472 5-10-5 MOE with mixed backbone chemistry 0 19 15 145
611478 5-10-5 MOE with mixed backbone chemistry 16 33 24 260
611490 5-10-5 MOE with mixed backbone chemistry 53 55 44 666
611494 5-10-5 MOE with mixed backbone chemistry 34 39 38 728
611495 5-10-5 MOE with mixed backbone chemistry 33 19 38 729
611498 5-10-5 MOE with mixed backbone chemistry 30 43 27 816
611499 5-10-5 MOE with mixed backbone chemistry 45 56 40 822
611500 5-10-5 MOE with mixed backbone chemistry 56 58 52 823
Table 54
ISIS No Chemistry Lumbar Thoracic Cervical SEQ ID NO
611457 5-10-5 MOE with mixed backbone chemistry 56 46 43 54
611467 5-10-5 MOE with mixed backbone chemistry 21 28 22 272
611488 5-10-5 MOE with mixed backbone chemistry 14 23 4 593
612917 Deoxy, MOE, and cEt with mixed backbone chemistry 47 55 37 1173
612923 Deoxy, MOE, and cEt with mixed backbone chemistry 53 63 45 1164
612925 Deoxy, MOE, and cEt with mixed backbone chemistry 67 69 63 1348
612928 Deoxy, MOE, and cEt with mixed backbone chemistry 84 85 81 1351
Table 55
ISIS No Chemistry Lumbar Thoracic Cervical SEQ ID NO
612912 Deoxy, MOE, and cEt with mixed backbone chemistry 59 60 48 1146
612919 Deoxy, MOE, and cEt with mixed backbone chemistry 60 60 58 1146
612916 Deoxy, MOE, and cEt with mixed backbone chemistry 72 69 69 1170
612931 Deoxy, MOE, and cEt with mixed backbone chemistry 81 79 72 1173
612932 Deoxy, MOE, and cEt with mixed backbone chemistry 21 26 24 1175
Table 56
ISIS No Chemistry Lumbar Thoracic Cervical SEQ ID NO
612915 Deoxy, MOE, and cEt with mixed backbone chemistry 54 48 52 1164
612918 Deoxy, MOE, and cEt with mixed backbone chemistry 73 69 64 1175
612927 Deoxy, MOE, and cEt with mixed backbone chemistry 82 75 62 1350
612934 Deoxy, MOE, and cEt with mixed backbone chemistry 59 44 48 969
612935 Deoxy, MOE, and cEt with mixed backbone chemistry 64 54 62 1114
612940 Deoxy, MOE, and cEt with mixed backbone chemistry 11 26 17 1167
612941 Deoxy, MOE, and cEt with mixed backbone chemistry 81 75 71 1342
612942 Deoxy, MOE, and cEt with mixed backbone chemistry 40 42 41 1344
612943 Deoxy, MOE, and cEt with mixed backbone chemistry 61 54 51 1346
612944 Deoxy, MOE, and cEt with mixed backbone chemistry 59 52 51 1348
Table 57
ISIS No Chemistry Lumbar Thoracic Cervical SEQ ID NO
612924 Deoxy, MOE, and cEt with mixed backbone chemistry 42 64 53 1346
612947 Deoxy, MOE, and cEt with mixed backbone chemistry 68 75 74 1351
612948 Deoxy, MOE, and cEt with mixed backbone chemistry 80 90 87 1352
612949 Deoxy, MOE, and cEt with mixed backbone chemistry 73 82 85 1172
Table 58
ISIS No Chemistry Lumbar Cervical SEQ ID NO
654304 5-8-5 MOE with mixed backbone chemistry 28 6 1429
654305 5-8-5 MOE with mixed backbone chemistry 14 0 1430
654306 5-8-5 MOE with mixed backbone chemistry 36 0 1432
654307 5-8-5 MOE with mixed backbone chemistry 17 0 1432
Table 59
ISIS No Chemistry Lumbar Cervical SEQ ID NO
654334 Deoxy, MOE, and cEt with mixed backbone chemistry 39 19 1454
666854 5-9-5 MOE with mixed backbone chemistry 52 39 1428
666855 5-9-5 MOE with mixed backbone chemistry 37 17 1461
666857 Deoxy, MOE, and cEt with mixed backbone chemistry 59 39 1351
666858 Deoxy, MOE, and cEt with mixed backbone chemistry 38 22 1351
666859 Deoxy, MOE, and cEt with mixed backbone chemistry 79 64 1351
666864 Deoxy, MOE, and cEt with mixed backbone chemistry 50 40 1351
666865 Deoxy, MOE, and cEt with mixed backbone chemistry 73 44 1351
666866 Deoxy, MOE, and cEt with mixed backbone chemistry 67 56 1173
666908 Deoxy, MOE, and cEt with mixed backbone chemistry 38 13 1175
666923 Deoxy, MOE, and cEt with mixed backbone chemistry 45 26 1342
Table 60
ISIS No Chemistry Lumbar Cervical SEQ ID NO
654323 Deoxy, MOE, and cEt with mixed backbone chemistry 53 35 1433
666846 5-10-5 MOE with mixed backbone chemistry 64 50 725
666849 5-10-5 MOE with mixed backbone chemistry 63 55 725
666853 5-10-5 MOE with mixed backbone chemistry 81 74 725
666861 Deoxy, MOE, and cEt with mixed backbone chemistry 55 47 1351
666867 Deoxy, MOE, and cEt with mixed backbone chemistry 59 48 1173
666869 Deoxy, MOE, and cEt with mixed backbone chemistry 82 81 1173
666870 Deoxy, MOE, and cEt with mixed backbone chemistry 76 68 1173
666919 Deoxy, MOE, and cEt with mixed backbone chemistry 76 68 1342
666921 Deoxy, MOE, and cEt with mixed backbone chemistry 71 65 1342
666922 Deoxy, MOE, and cEt with mixed backbone chemistry 67 62 1342
Table 61
ISIS No Chemistry Lumbar SEQ ID NO
684059 Deoxy, MOE, and cEt with mixed backbone chemistry 54 1348
684064 Deoxy, MOE, and cEt with mixed backbone chemistry 51 1348
684068 4-8-5 MOE with mixed backbone chemistry 18 1348
684087 5-8-5 MOE with mixed backbone chemistry 37 613
684088 5-8-5 MOE with mixed backbone chemistry 31 1419
684095 5-10-5 MOE with mixed backbone chemistry 34 21
684097 5-8-7 MOE with mixed backbone chemistry 22 21
684101 6-8-6 MOE with mixed backbone chemistry 22 47
684104 6-9-5 MOE with mixed backbone chemistry 11 47
Example 13: Dose-dependent inhibition of human SOD-1 with modified oligonucleotides in LLC-MK2 cells
Gapmers from the studies described above, including benchmark compound ISIS 333611, exhibiting significant in vitro inhibition of SOD-1 mRNA were selected and tested at various doses in LLC-MK2 cells. The cross-reactivity of the human modified oligonucleotides tested in this study with the rhesus monkey genomic sequence (the complement of GENBANK Accession No. NW_001114168.1 truncated from nucleotides 2258000 to 2271000, designated herein as SEQ ID NO: 3) is shown in the Table below. Table 62
ISIS No Start Site of SEQ ID NO: 3 Mismatches
333611 1572 2
436839 1564 0
436854 9049 0
436867 10347 0
666853 10375 1
666859 10389 1
666919 10376 1
666921 10376 1
Cells were plated at a density of 20,000 cells per well and transfected using electroporation with 0.078 µM, 0.156 µM, 0.313 µM, 0.625 µM, 1.25 µM, 2.50 µM, 5.00 µM, and 10.000 µM concentrations of modified oligonucleotide, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR Primer probe set RTS3121 (forward sequence TGGAGATAATACACAAGGCTGTACCA, designated herein as SEQ ID NO: 17; reverse sequence CAACATGCCTCTCTTCATCCTTT, designated herein as SEQ ID NO: 18; probe sequence ATCCTCTATCCAGACAACACGGTGGGC, designated herein as SEQ ID NO: 19) was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. The half maximal inhibitory concentration (IC50) of each oligonucleotide is also presented. As presented in the Table, several of the newly designed oligonucleotides were more potent than the benchmark, ISIS 336611. Table 63
ISIS No 0.078 µM 0.156 µM 0.313 µM 0.625 µM 1.25 µM 2.50 µM 5.00 µM 10.00 µM
333611 3 2 0 0 17 15 19 40 >10
436839 0 0 5 0 20 22 37 61 7.1
436854 34 34 40 39 52 65 69 84 1.2
436867 3 0 11 18 34 49 70 87 2.2
666853 7 34 20 39 60 80 79 92 1.0
666859 0 9 20 18 15 25 30 44 >10
666919 11 15 16 36 51 65 73 84 1.4
666921 0 13 28 37 50 52 62 74 1.8
Example 14: Tolerability of SOD-1 modified oligonucleotides in a rat model
Gapmers from the studies described above, including benchmark compound ISIS 333611, which was previously disclosed in WO 2005/040180 , were tested for tolerability in Sprague-Dawley rats.
The modified oligonucleotides were tested in a series of experiments that had similar conditions. Rats were injected intrathecally with3 mg of a single dose of ISIS oligonucleotide. A control group of rats was injected intrathecally with PBS. Acute tolerability was assessed 3 hours post-dose using a functional observational battery (FOB). This score is used to evaluate the acute tolerability of a compound with lower scores denoting better tolerated compounds. Control animals usually have a score of '0' or '1'. At 3 hours post injection, the rats are observed by placing each rat on the cage top and evaluating certain functions, assigning a number of '0' or '1' depending on whether the rat exhibits normal function in the region of interest (0) or does not (1) for each function, and then adding the total scores. Seven regions are assessed, including tail, hind paws, hind legs, hind end, front posture, fore paws, and head. The results of the scoring are presented in the Table below. As presented in the Table, several newly designed oligonucleotides demonstrated more acute tolerability compared to the benchmark, ISIS 333611. Table 64
ISIS No Target Start Site on SEQ ID NO: 1 Chemistry FOB score
333611 167 5-10-5 MOE with phosphorothioate backbone 4
684073 167 Deoxy, MOE, and cEt with mixed backbone 3
684081 167 Deoxy, MOE, and cEt with mixed backbone 1
684088 167 5-8-5 MOE with mixed backbone 0
684093 167 5-9-5 MOE with mixed backbone 0
684095 167 5-10-5 MOE with mixed backbone 0
684096 167 6-8-6 MOE with mixed backbone 0
684097 167 5-8-7 MOE with mixed backbone 0
684098 167 7-8-5 MOE with mixed backbone 0
684099 167 6-9-5 MOE with mixed backbone 0
684074 168 Deoxy, MOE, and cEt with mixed backbone 0
684082 168 Deoxy, MOE, and cEt with mixed backbone 1
684089 168 5-8-5 MOE with mixed backbone 0
684094 168 5-9-5 MOE with mixed backbone 1
684075 169 Deoxy, MOE, and cEt with mixed backbone 3
684083 169 Deoxy, MOE, and cEt with mixed backbone 3
684090 169 5-8-5 MOE with mixed backbone 2
684076 170 Deoxy, MOE, and cEt with mixed backbone 2
684084 170 Deoxy, MOE, and cEt with mixed backbone 4
611474 234 5-10-5 MOE with mixed backbone 4
654301 234 5-8-5 MOE with mixed backbone 3
654302 235 5-8-5 MOE with mixed backbone 1
654303 236 5-8-5 MOE with mixed backbone 0
684069 588 Deoxy, MOE, and cEt with mixed backbone 0
684077 588 Deoxy, MOE, and cEt with mixed backbone 1
684085 588 5-8-5 MOE with mixed backbone 0
684091 588 5-9-5 MOE with mixed backbone 0
684100 588 5-10-5 MOE with mixed backbone 0
684101 588 6-8-6 MOE with mixed backbone 0
684102 588 5-8-7 MOE with mixed backbone 0
684103 588 7-8-5 MOE with mixed backbone 0
684104 588 6-9-5 MOE with mixed backbone 0
684070 589 Deoxy, MOE, and cEt with mixed backbone 0
684078 589 Deoxy, MOE, and cEt with mixed backbone 0
684086 589 5-8-5 MOE with mixed backbone 0
684092 589 5-9-5 MOE with mixed backbone 0
684071 590 Deoxy, MOE, and cEt with mixed backbone 0
684079 590 Deoxy, MOE, and cEt with mixed backbone 0
684087 590 5-8-5 MOE with mixed backbone 0
684072 591 Deoxy, MOE, and cEt with mixed backbone 1
684080 591 Deoxy, MOE, and cEt with mixed backbone 1
654304 663 5-8-5 MOE with mixed backbone 3
612916 664 Deoxy, MOE, and cEt with mixed backbone 0
654305 664 5-8-5 MOE with mixed backbone 2
611492 665 5-10-5 MOE with mixed backbone 0
654306 665 5-8-5 MOE with mixed backbone 3
654323 665 Deoxy, MOE, and cEt with mixed backbone 0
654341 665 Deoxy, MOE, and cEt with mixed backbone 0
666846 665 5-10-5 MOE with mixed backbone 0
666849 665 5-10-5 MOE with mixed backbone 0
666851 665 5-10-5 MOE with mixed backbone 1
666853 665 5-10-5 MOE with mixed backbone 0
666854 665 5-9-5 MOE with mixed backbone 1
611500 666 5-10-5 MOE with mixed backbone 0
612941 666 Deoxy, MOE, and cEt with mixed backbone 3
654307 666 5-8-5 MOE with mixed backbone 2
654342 666 Deoxy, MOE, and cEt with mixed backbone 2
666845 666 5-10-5 MOE with mixed backbone 0
666848 666 5-10-5 MOE with mixed backbone 1
666850 666 5-10-5 MOE with mixed backbone 0
666852 666 5-10-5 MOE with mixed backbone 1
666855 666 5-9-5 MOE with mixed backbone 1
666917 666 Deoxy, MOE, and cEt with mixed backbone 3
666918 666 Deoxy, MOE, and cEt with mixed backbone 3
666919 666 Deoxy, MOE, and cEt with mixed backbone 2
666920 666 Deoxy, MOE, and cEt with mixed backbone 1
666921 666 Deoxy, MOE, and cEt with mixed backbone 2
666922 666 Deoxy, MOE, and cEt with mixed backbone 3
666923 666 Deoxy, MOE, and cEt with mixed backbone 2
666856 667 5-9-5 MOE with mixed backbone 3
612925 676 Deoxy, MOE, and cEt with mixed backbone 4
684059 676 Deoxy, MOE, and cEt with mixed backbone 4
684060 676 Deoxy, MOE, and cEt with mixed backbone 3
684061 676 Deoxy, MOE, and cEt with mixed backbone 4
684062 676 Deoxy, MOE, and cEt with mixed backbone 4
684063 676 Deoxy, MOE, and cEt with mixed backbone 5
684064 676 Deoxy, MOE, and cEt with mixed backbone 4
684065 676 Deoxy, MOE, and cEt with mixed backbone 4
684066 676 Deoxy, MOE, and cEt with mixed backbone 4
684067 676 Deoxy, MOE, and cEt with mixed backbone 5
684068 676 4-8-5 MOE with mixed backbone 4
612927 678 Deoxy, MOE, and cEt with mixed backbone 4
654309 678 5-8-5 MOE with mixed backbone 4
612928 679 Deoxy, MOE, and cEt with mixed backbone 2
612947 679 Deoxy, MOE, and cEt with mixed backbone 7
654310 679 5-8-5 MOE with mixed backbone 3
666857 679 Deoxy, MOE, and cEt with mixed backbone 1
666858 679 Deoxy, MOE, and cEt with mixed backbone 1
666859 679 Deoxy, MOE, and cEt with mixed backbone 1
666860 679 Deoxy, MOE, and cEt with mixed backbone 0
666861 679 Deoxy, MOE, and cEt with mixed backbone 5
666862 679 Deoxy, MOE, and cEt with mixed backbone 1
666863 679 Deoxy, MOE, and cEt with mixed backbone 4
666864 679 Deoxy, MOE, and cEt with mixed backbone 4
666865 679 Deoxy, MOE, and cEt with mixed backbone 5
611497 681 5-10-5 MOE with mixed backbone 5
612948 681 Deoxy, MOE, and cEt with mixed backbone 3
666847 681 5-10-5 MOE with mixed backbone 7
612949 683 Deoxy, MOE, and cEt with mixed backbone 4
612931 684 Deoxy, MOE, and cEt with mixed backbone 4
666866 684 Deoxy, MOE, and cEt with mixed backbone 6
666867 684 Deoxy, MOE, and cEt with mixed backbone 6
666868 684 Deoxy, MOE, and cEt with mixed backbone 6
666869 684 Deoxy, MOE, and cEt with mixed backbone 6
666870 684 Deoxy, MOE, and cEt with mixed backbone 6
666871 684 Deoxy, MOE, and cEt with mixed backbone 6
666872 684 Deoxy, MOE, and cEt with mixed backbone 6
666873 684 Deoxy, MOE, and cEt with mixed backbone 6
666874 684 Deoxy, MOE, and cEt with mixed backbone 5
612918 686 Deoxy, MOE, and cEt with mixed backbone 4
612932 686 Deoxy, MOE, and cEt with mixed backbone 2
666906 686 Deoxy, MOE, and cEt with mixed backbone 2
666907 686 Deoxy, MOE, and cEt with mixed backbone 3
666908 686 Deoxy, MOE, and cEt with mixed backbone 1
666909 686 Deoxy, MOE, and cEt with mixed backbone 0
666910 686 Deoxy, MOE, and cEt with mixed backbone 2
666911 686 Deoxy, MOE, and cEt with mixed backbone 0
666912 686 Deoxy, MOE, and cEt with mixed backbone 0
666913 686 Deoxy, MOE, and cEt with mixed backbone 0
666914 686 Deoxy, MOE, and cEt with mixed backbone 0
666915 686 Deoxy, MOE, and cEt with mixed backbone 1
666916 686 Deoxy, MOE, and cEt with mixed backbone 1
654318 687 5-8-5 MOE with mixed backbone 1
654334 687 Deoxy, MOE, and cEt with mixed backbone 3
Tolerability was also assessed 8 weeks post-dose by measuring the levels of IBA1, a microglial marker, and GFAP, an astrocytic marker, in the lumbar spinal cord region. Both IBA1 and GFAP are markers of CNS inflammation (Frank, MG, Brain Behav. Immun. 2007, 21, 47-59), hence the higher the level of either marker, the less tolerable the antisense oligonucleotide is deemed to be in this rat model.
IBA1 mRNA levels were measured with primer probe set rAIF1_LTS00219 (forward sequence AGGAGAAAAACAAAGAACACCAGAA, designated herein as SEQ ID NO: 5; reverse sequence CAATTAGGGCAACTCAGAAATAGCT, designated herein as SEQ ID NO: 6; probe sequence CCAACTGGTCCCCCAGCCAAGA, designated herein as SEQ ID NO: 7). GFAP mRNA levels were measured with primer probe set mGFAP_LTS00370 (forward sequence GAAACCAGCCTGGACACCAA, designated herein as SEQ ID NO: 8; reverse sequence TCCACAGTCTTTACCACGATGTTC, designated herein as SEQ ID NO: 9; probe sequence TCCGTGTCAGAAGGCCACCTCAAGA, designated herein as SEQ ID NO: 10).
The results are presented in the Table below. As presented in the Table, several newly designed oligonucleotides were more tolerable compared to the benchmark, ISIS 333611. Table 65
ISIS No. IBA1 GFAP
333611 341 314
654301 149 137
654302 261 129
654303 110 80
654304 143 130
654305 185 158
654306 110 106
654307 152 144
654309 195 169
654310 119 141
654318 93 81
654323 125 113
654334 114 75
654341 209 224
654342 473 485
666845 389 416
666846 173 171
666847 271 297
666848 399 377
666849 140 150
666850 246 252
666851 246 199
666852 282 266
666853 168 147
666854 135 123
666855 238 221
666856 253 209
666857 242 182
666858 169 134
666859 185 162
666861 161 152
666862 254 285
666863 216 185
666864 174 154
666865 251 232
666866 281 135
666867 132 112
666868 199 211
666869 262 207
666870 201 189
666871 192 214
666872 441 136
666873 340 277
666874 204 199
666917 292 244
666919 115 85
666920 155 102
666921 108 82
666922 123 82
666923 118 93
684059 168 162
684060 158 141
684061 335 263
684062 218 265
684064 191 168
684065 245 304
684066 313 376
684067 171 151
684068 157 135
684085 459 586
684086 187 227
684087 215 263
684088 151 183
684089 507 667
684090 130 170
684091 350 426
684092 366 333
684093 412 264
684094 294 373
684095 213 215
684096 404 335
684097 217 206
684098 378 438
684099 534 473
684100 276 259
684101 153 125
684102 237 242
684103 588 416
684104 221 193
Example 15: Dose dependent inhibition of human SOD-1 in a transgenic rat model
Gapmers from the studies described above, including benchmark compound ISIS 333611, were tested in an SOD-1 transgenic rat model (Taconic, Cat# 2148-F and 2148-M). These hemizygous rats express mutant human SOD-1 in the spinal cord, many brain regions, and peripheral organs.
Rats were injected intrathecally with 10, 30, 100, 300, 1000, or 3000 µg of a gapmer listed in the table below or with only PBS. Two weeks later, the animals were sacrificed. Inhibition of SOD-1 mRNA in the lumbar spinal cord, cervical spinal cord, rostral cortex, and caudal cortex was assessed by RT-PCR using primer probe set RTS3898, described in Example 1. The data is presented below as ED50 values, and indicates that the oligonucleotides inhibited SOD1 mRNA in multiple CNS tissues more potently than Isis 333611. Indeed, ED50 values for Isis No. 333611 could not even be calculated, as indicated by an entry of "n/a," because even the highest concentration tested (3000 µg) did not inhibit SOD-1 mRNA greater than 55-65%. "n.d." indicates that there is no data available for the indicated sample. Table 66
Isis No. SEQ ID NO.
Lumbar Cervical Rostral Caudal
333611 n/a n/a n.d. n.d. 21
666853 81.3 242.6 6434 931 725
666859 74.0 358.8 2360 1113 1351
666870 139.4 1111 5511 2105 1173
666919 104.1 613.5 > 6000 2655 1342
Example 16: Tolerability of SOD-1 modified oligonucleotides in rats
Gapmers from the studies described above, including benchmark compound ISIS 333611, were tested for tolerability in Sprague-Dawley rats. Groups of 4 to 6 rats were injected intrathecally with 1 mg or 3 mg of a single dose of an ISIS oligonucleotide. A control group of rats was injected intrathecally with PBS. Acute tolerability was assessed 3 hours post-dose, as described in Example 14. The results for the 1 mg dose are the averages for each group following one experiment. The results for the 3 mg dose are the averages for each group across two replicate experiments. The results of the study, presented in the table below, indicate that several newly designed oligonucleotides were more tolerable than the benchmark, ISIS 333611. Table 67
Isis No. 3 hour FOB 8 week FOB
1 mg 3 mg 1 mg 3 mg
333611 3.0 4.9 0.0 1.2
666853 0.0 0.5 0.0 0.0
666859 0.0 2.1 0.0 0.3
666870 2.3 5.8 0.0 0.8
666919 1.3 3.5 0.0 0.1
Example 17: Dose dependent inhibition of human SOD-1 in a transgenic mouse model
In order to confirm the results obtained in transgenic rats in another species, gapmers from the studies described above were tested in an SOD-1 transgenic mouse model that expresses the same G93A human mutant SOD1 gene that the transgenic rat expresses (see Examples 12 and 15).
Mice received an intracerebral ventricular bolus (ICVB) of 10, 30, 100, 300, or 700 µg of a gapmer listed in the table below, or PBS. Two weeks later, the animals were sacrificed. Inhibition of SOD-1 mRNA in the lumbar spinal cord and cortex was assessed by RT-PCR using primer probe set RTS3898, described in Example 1. The data is presented below as ED50 values, and indicates that the oligonucleotides inhibited SOD1 mRNA more potently than Isis 333611 in both rats and mice. Table 68
Isis No.
333611 401 786
666853 136 188
666859 106 206
666870 148 409
666919 168 1211
Example 18: Tolerability of SOD-1 modified oligonucleotides in mice
Gapmers from the studies described above, including benchmark compound ISIS 333611, were tested for tolerability in C57bl6 mice. Mice were injected stereotaxically into the cerebral ventricles with 700ug of a single dose of ISIS oligonucleotide. A control group of mice was injected into the cerebral ventricle with PBS. Acute tolerability was assessed at 3 hours post injection using a functional observation battery (FOB) different from that used for the rats. Each mouse was evaluated according to 7 different criteria. The 7 criteria are (1) the mouse was bright, alert, and responsive; (2) the mouse was standing or hunched without stimuli; (3) the mouse shows any movement without stimuli (4) the mouse demonstrates forward movement after its lifted; (5) the mouse demonstrates any movement after its lifted; (6) the mouse responds to a tail pinch; (7) regular breathing. For each of the 7 different criteria, each mouse was given a sub-score of 0 if it met the criteria or 1 if it did not. After all of the 7 criteria were evaluated, the sub-scores were summed for each mouse and then averaged for each group. For example, if a mouse was bright, alert, and responsive 3 hours after the 700 µg ICV dose, and met all other other criteria, it would get a summed score of 0. If another mouse was not bright, alert, and responsive 3 hours after the 700 µg ICV dose but met all other criteria, it would receive a score of 1. Saline treated mice generally receive a score of 0. A score at the top end of the range would be suggestive of acute toxicity.
Body weights were measured throughout the study and are reported below as percent change at 8 weeks relative to baseline. Long term tolerability was assessed 8 weeks post-dose by measuring the levels of IBA1 and GFAP, as described in Example 14. IBA1 and GFAP mRNA levels are reported relative to PBS treated animals. The results of the study, presented in the tables below, indicate that several newly designed oligonucleotides were more tolerable, in rats and mice, compared to the benchmark, ISIS 333611. Table 69
Isis No. 3 hour FOB Body weight (% change)
333611 6.5 3.8
666853 1.25 8.0
666859 1.75 14.0
666870 4.75 7.3
666919 0.0 5.2
Table 70
Isis No. IBA1 (% PBS) GFAP (% PBS)
Lumbar Cortex Lumbar Cortex
333611 130.3 134.3 117.5 207.7
666853 102.8 109.3 103.3 103.7
666859 110.4 98.2 109.0 72.8
666870 158.8 117.8 106.7 128.6
666919 115.0 97.9 99.8 84.3
Example 19: Dose dependent inhibition of monkey SOD-1 in cynomolgus monkey
Isis No. 666853 was tested in cynomolgus monkey. There is one mismatch between Isis No. 666853 and cynomolgus monkey SOD-1, and there are 17 contiguous bases in Isis No. 666853 that are 100% complementary to cynomolgus monkey SOD-1.
Groups of 6-10 male and female monkeys received an intrathecal lumbar bolus of PBS or 4, 12, or 35 mg of Isis No. 666853 on days 1, 14, 28, 56, and 84 of the study. Each group received the same dose on all five dosing days. On day 91, the animals were sacrificed. Inhibition of SOD-1 mRNA in the lumbar, thoracic, and cervical spinal cord and frontal cortex, motor cortex, hippocampus, pons, and cerebellum was assessed by RT-PCR using primer probe set RTS3898. The data is presented below as the average percent inhibition for each treatment group, relative to the PBS treated group. The results indicate that Isis No. 666853 inhibited SOD-1 mRNA in multiple target tissues in cynomolgus monkey.
Treatment with 666853 was well tolerated for the duration of the 13 week study and there were no clinical observations of adverse reactions in monkeys. Table 71
Amount of 666853 per dose (mg) Inhibition (%)
Lumbar Thoracic Cervical Frontal cortex Motor cortex Hippocampus Pons Cerebellum
4 44.4 27.1 20.1 21.5 21.6 32.0 6.8 15.4
12 75.4 69.0 42.1 56.7 55.7 31.8 13.2 33.3
35 87.0 74.8 72.1 80.5 82.6 80.1 48.6 48.4
SEQUENCE LISTING
  • <110> Isis Pharmaceuticals, Inc.
  • <120> COMPOSITIONS FOR MODULATING SOD-1 EXPRESSION
  • <130> BIOL0240WO
  • <150> 61/973,803 <151> 2014-04-01
  • <160> 1461
  • <170> PatentIn version 3.5
  • <210> 1 <211> 981 <212> DNA <213> Homo sapiens
  • <400> 1
  • <210> 2 <211> 11001 <212> DNA <213> Homo sapiens
  • <400> 2
  • <210> 3 <211> 13001 <212> DNA <213> Macaca mulata
  • <400> 3
  • <210> 4
  • <400> 4 000
  • <210> 5 <211> 25 <212> DNA <213> Artificial sequence
  • <220> <223> Primer
  • <400> 5 aggagaaaaa caaagaacac cagaa   25
  • <210> 6 <211> 25 <212> DNA <213> Artificial sequence
  • <220> <223> Primer
  • <400> 6 caattagggc aactcagaaa tagct   25
  • <210> 7 <211> 22 <212> DNA <213> Artificial sequence
  • <220> <223> Probe
  • <400> 7 ccaactggtc ccccagccaa ga   22
  • <210> 8 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Primer
  • <400> 8 gaaaccagcc tggacaccaa   20
  • <210> 9 <211> 24 <212> DNA <213> Artificial sequence
  • <220> <223> Primer
  • <400> 9 tccacagtct ttaccacgat gttc   24
  • <210> 10 <211> 25 <212> DNA <213> Artificial sequence
  • <220> <223> Probe
  • <400> 10 tccgtgtcag aaggccacct caaga   25
  • <210> 11 <211> 22 <212> DNA <213> Artificial sequence
  • <220> <223> Primer
  • <400> 11 ctctcaggag accattgcat ca   22
  • <210> 12 <211> 27 <212> DNA <213> Artificial sequence
  • <220> <223> Primer
  • <400> 12 tcctgtcttt gtactttctt catttcc   27
  • <210> 13 <211> 24 <212> DNA <213> Artificial sequence
  • <220> <223> Probe
  • <400> 13 ccgcacactg gtggtccatg aaaa   24
  • <210> 14 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Primer
  • <400> 14 cgtggcctag cgagttatgg   20
  • <210> 15 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Primer
  • <400> 15 gaaattgatg atgccctgca   20
  • <210> 16 <211> 21 <212> DNA <213> Artificial sequence
  • <220> <223> Probe
  • <400> 16 acgaaggccg tgtgcgtgct g   21
  • <210> 17 <211> 26 <212> DNA <213> Artificial sequence
  • <220> <223> Primer
  • <400> 17 tggagataat acacaaggct gtacca   26
  • <210> 18 <211> 23 <212> DNA <213> Artificial sequence
  • <220> <223> Primer
  • <400> 18 caacatgcct ctcttcatcc ttt   23
  • <210> 19 <211> 27 <212> DNA <213> Artificial sequence
  • <220> <223> Probe
  • <400> 19 atcctctatc cagacaacac ggtgggc   27
  • <210> 20
  • <400> 20 000
  • <210> 21 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 21 ccgtcgccct tcagcacgca   20
  • <210> 22 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 22 cactggtcca ttactttcct   20
  • <210> 23 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 23 acaccttcac tggtccatta   20
  • <210> 24 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 24 ccacaccttc actggtccat   20
  • <210> 25 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 25 caacatgcct ctcttcatcc   20
  • <210> 26 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 26 ccaacatgcc tctcttcatc   20
  • <210> 27 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 27 tccaacatgc ctctcttcat   20
  • <210> 28 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 28 ctccaacatg cctctcttca   20
  • <210> 29 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 29 tctccaacat gcctctcttc   20
  • <210> 30 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 30 gtctccaaca tgcctctctt   20
  • <210> 31 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 31 cacctttgcc caagtcatct   20
  • <210> 32 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 32 ccacctttgc ccaagtcatc   20
  • <210> 33 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 33 tccacctttg cccaagtcat   20
  • <210> 34 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 34 ttccaccttt gcccaagtca   20
  • <210> 35 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 35 tttccacctt tgcccaagtc   20
  • <210> 36 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 36 atttccacct ttgcccaagt   20
  • <210> 37 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 37 catttccacc tttgcccaag   20
  • <210> 38 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 38 tcatttccac ctttgcccaa   20
  • <210> 39 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 39 ttcatttcca cctttgccca   20
  • <210> 40 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 40 cttcatttcc acctttgccc   20
  • <210> 41 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 41 tcttcatttc cacctttgcc   20
  • <210> 42 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 42 ttcttcattt ccacctttgc   20
  • <210> 43 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 43 tttcttcatt tccacctttg   20
  • <210> 44 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 44 ctttcttcat ttccaccttt   20
  • <210> 45 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 45 actttcttca tttccacctt   20
  • <210> 46 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 46 tactttcttc atttccacct   20
  • <210> 47 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 47 ggcgatccca attacaccac   20
  • <210> 48 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 48 ggaatgttta ttgggcgatc   20
  • <210> 49 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 49 cctcagacta catccaaggg   20
  • <210> 50 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 50 atacaaatct tccaagtgat   20
  • <210> 51 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 51 tgagttttat aaaactatac   20
  • <210> 52 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 52 tcattgaaac agacatttta   20
  • <210> 53 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 53 atacaggtca ttgaaacaga   20
  • <210> 54 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 54 gtcgcccttc agcacgcaca   20
  • <210> 55 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 55 tttaataccc atctgtgatt   20
  • <210> 56 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 56 agtttaatac ccatctgtga   20
  • <210> 57 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 57 ggtttttatt cacaggcttg   20
  • <210> 58 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 58 agggttttta ttcacaggct   20
  • <210> 59 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 59 atacagggtt tttattcaca   20
  • <210> 60 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 60 ccatacaggg tttttattca   20
  • <210> 61 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 61 acgctgcagg agactacgac   20
  • <210> 62 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 62 cgaggactgc aacggaaacc   20
  • <210> 63 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 63 taggccacgc cgaggtcctg   20
  • <210> 64 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 64 ttcagcacgc acacggcctt   20
  • <210> 65 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 65 ccttcagcac gcacacggcc   20
  • <210> 66 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 66 gcccttcagc acgcacacgg   20
  • <210> 67 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 67 tcgcccttca gcacgcacac   20
  • <210> 68 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 68 cgtcgccctt cagcacgcac   20
  • <210> 69 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 69 gccctgcact gggccgtcgc   20
  • <210> 70 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 70 aattgatgat gccctgcact   20
  • <210> 71 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 71 agtcctttaa tgcttcccca   20
  • <210> 72 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 72 aggccttcag tcagtccttt   20
  • <210> 73 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 73 gctgtattat ctccaaactc   20
  • <210> 74 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 74 tgcccaagtc tccaacatgc   20
  • <210> 75 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 75 acacatcggc cacaccatct   20
  • <210> 76 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 76 tctcctgaga gtgagatcac   20
  • <210> 77 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 77 accaccagtg tgcggccaat   20
  • <210> 78 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 78 tcatggacca ccagtgtgcg   20
  • <210> 79 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 79 gtactttctt catttccacc   20
  • <210> 80 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 80 ttgtactttc ttcatttcca   20
  • <210> 81 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 81 ctttgtactt tcttcatttc   20
  • <210> 82 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 82 gataacagat gagttaaggg   20
  • <210> 83 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 83 cacaattaca cttttaagat   20
  • <210> 84 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 84 aatcagtttc tcactacagg   20
  • <210> 85 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 85 cataaatcag tttctcacta   20
  • <210> 86 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 86 aactgagttt tataaaacta   20
  • <210> 87 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 87 ccatctgtga tttaagtctg   20
  • <210> 88 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 88 aagtgccata cagggttttt   20
  • <210> 89 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 89 taataagtgc catacagggt   20
  • <210> 90 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 90 ctcataataa gtgccataca   20
  • <210> 91 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 91 gcctcataat aagtgccata   20
  • <210> 92 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 92 ttttaatagc ctcataataa   20
  • <210> 93 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 93 ggattctttt aatagcctca   20
  • <210> 94 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 94 ctcactacag gtactttaaa   20
  • <210> 95 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 95 aatcttccaa gtgatcataa   20
  • <210> 96 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 96 attgaaacag acattttaac   20
  • <210> 97 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 97 caaagaaatt ctgacaagtt   20
  • <210> 98 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 98 acaggcttga atgacaaaga   20
  • <210> 99 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 99 tcataataag tgccatacag   20
  • <210> 100 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 100 caggccttca gtcagtcctt   20
  • <210> 101 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 101 cacattgccc aagtctccaa   20
  • <210> 102 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 102 tcggccacac catctttgtc   20
  • <210> 103 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 103 catcggccac accatctttg   20
  • <210> 104 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 104 tagacacatc ggccacacca   20
  • <210> 105 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 105 ctcctgagag tgagatcaca   20
  • <210> 106 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 106 catggaccac cagtgtgcgg   20
  • <210> 107 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 107 taggccagac ctccgcgcct   20
  • <210> 108 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 108 actttatagg ccagacctcc   20
  • <210> 109 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 109 gacgcaaacc agcaccccgt   20
  • <210> 110 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 110 ggttccgagg actgcaacgg   20
  • <210> 111 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 111 tcctggttcc gaggactgca   20
  • <210> 112 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 112 gaggtcctgg ttccgaggac   20
  • <210> 113 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 113 gtcgccataa ctcgctaggc   20
  • <210> 114 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 114 tcagcacgca cacggccttc   20
  • <210> 115 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 115 cttcagcacg cacacggcct   20
  • <210> 116 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 116 cccttcagca cgcacacggc   20
  • <210> 117 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 117 cgcccttcag cacgcacacg   20
  • <210> 118 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 118 cgcccactct ggccccaaac   20
  • <210> 119 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 119 ccgcgactac tttataggcc   20
  • <210> 120 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 120 ccttctgctc gaaattgatg   20
  • <210> 121 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 121 tccttctgct cgaaattgat   20
  • <210> 122 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 122 ttccttctgc tcgaaattga   20
  • <210> 123 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 123 tttccttctg ctcgaaattg   20
  • <210> 124 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 124 ctttccttct gctcgaaatt   20
  • <210> 125 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 125 actttccttc tgctcgaaat   20
  • <210> 126 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 126 tactttcctt ctgctcgaaa   20
  • <210> 127 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 127 ttactttcct tctgctcgaa   20
  • <210> 128 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 128 attactttcc ttctgctcga   20
  • <210> 129 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 129 cattactttc cttctgctcg   20
  • <210> 130 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 130 ccattacttt ccttctgctc   20
  • <210> 131 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 131 tccattactt tccttctgct   20
  • <210> 132 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 132 gtccattact ttccttctgc   20
  • <210> 133 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 133 ggtccattac tttccttctg   20
  • <210> 134 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 134 tggtccatta ctttccttct   20
  • <210> 135 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 135 ctggtccatt actttccttc   20
  • <210> 136 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 136 actggtccat tactttcctt   20
  • <210> 137 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 137 tcactggtcc attactttcc   20
  • <210> 138 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 138 ttcactggtc cattactttc   20
  • <210> 139 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 139 cttcactggt ccattacttt   20
  • <210> 140 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 140 ccttcactgg tccattactt   20
  • <210> 141 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 141 accttcactg gtccattact   20
  • <210> 142 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 142 caccttcact ggtccattac   20
  • <210> 143 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 143 cacaccttca ctggtccatt   20
  • <210> 144 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 144 cccacacctt cactggtcca   20
  • <210> 145 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 145 ccccacacct tcactggtcc   20
  • <210> 146 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 146 tccccacacc ttcactggtc   20
  • <210> 147 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 147 ttccccacac cttcactggt   20
  • <210> 148 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 148 cttccccaca ccttcactgg   20
  • <210> 149 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 149 gcttccccac accttcactg   20
  • <210> 150 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 150 tgcttcccca caccttcact   20
  • <210> 151 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 151 atgcttcccc acaccttcac   20
  • <210> 152 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 152 aatgcttccc cacaccttca   20
  • <210> 153 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 153 taatgcttcc ccacaccttc   20
  • <210> 154 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 154 tccatgcagg ccttcagtca   20
  • <210> 155 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 155 atccatgcag gccttcagtc   20
  • <210> 156 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 156 aatccatgca ggccttcagt   20
  • <210> 157 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 157 gaatccatgc aggccttcag   20
  • <210> 158 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 158 ggaatccatg caggccttca   20
  • <210> 159 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 159 tggaatccat gcaggccttc   20
  • <210> 160 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 160 atggaatcca tgcaggcctt   20
  • <210> 161 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 161 catggaatcc atgcaggcct   20
  • <210> 162 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 162 acatggaatc catgcaggcc   20
  • <210> 163 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 163 aacatggaat ccatgcaggc   20
  • <210> 164 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 164 gaacatggaa tccatgcagg   20
  • <210> 165 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 165 tgaacatgga atccatgcag   20
  • <210> 166 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 166 atgaacatgg aatccatgca   20
  • <210> 167 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 167 gacctgcact ggtacagcct   20
  • <210> 168 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 168 ggacctgcac tggtacagcc   20
  • <210> 169 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 169 aggacctgca ctggtacagc   20
  • <210> 170 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 170 gaggacctgc actggtacag   20
  • <210> 171 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 171 tgaggacctg cactggtaca   20
  • <210> 172 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 172 gtgaggacct gcactggtac   20
  • <210> 173 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 173 agtgaggacc tgcactggta   20
  • <210> 174 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 174 aagtgaggac ctgcactggt   20
  • <210> 175 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 175 aaagtgagga cctgcactgg   20
  • <210> 176 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 176 taaagtgagg acctgcactg   20
  • <210> 177 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 177 ttaaagtgag gacctgcact   20
  • <210> 178 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 178 attaaagtga ggacctgcac   20
  • <210> 179 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 179 gattaaagtg aggacctgca   20
  • <210> 180 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 180 ggattaaagt gaggacctgc   20
  • <210> 181 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 181 aggattaaag tgaggacctg   20
  • <210> 182 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 182 gaggattaaa gtgaggacct   20
  • <210> 183 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 183 agaggattaa agtgaggacc   20
  • <210> 184 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 184 tagaggatta aagtgaggac   20
  • <210> 185 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 185 atagaggatt aaagtgagga   20
  • <210> 186 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 186 gatagaggat taaagtgagg   20
  • <210> 187 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 187 ggatagagga ttaaagtgag   20
  • <210> 188 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 188 tggatagagg attaaagtga   20
  • <210> 189 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 189 ctggatagag gattaaagtg   20
  • <210> 190 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 190 tctggataga ggattaaagt   20
  • <210> 191 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 191 atcctttggc ccaccgtgtt   20
  • <210> 192 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 192 catcctttgg cccaccgtgt   20
  • <210> 193 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 193 tcatcctttg gcccaccgtg   20
  • <210> 194 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 194 ttcatccttt ggcccaccgt   20
  • <210> 195 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 195 cttcatcctt tggcccaccg 20
  • <210> 196 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 196 tcttcatcct ttggcccacc 20
  • <210> 197 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 197 ctcttcatcc tttggcccac 20
  • <210> 198 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 198 tctcttcatc ctttggccca 20
  • <210> 199 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 199 ctctcttcat cctttggccc 20
  • <210> 200 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 200 cctctcttca tcctttggcc   20
  • <210> 201 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 201 gcctctcttc atcctttggc   20
  • <210> 202 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 202 tgcctctctt catcctttgg   20
  • <210> 203 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 203 atgcctctct tcatcctttg   20
  • <210> 204 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 204 catgcctctc ttcatccttt   20
  • <210> 205 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 205 acatgcctct cttcatcctt   20
  • <210> 206 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 206 aacatgcctc tcttcatcct   20
  • <210> 207 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 207 tgctttttca tggaccacca   20
  • <210> 208 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 208 ctgctttttc atggaccacc   20
  • <210> 209 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 209 tctgcttttt catggaccac   20
  • <210> 210 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 210 atctgctttt tcatggacca   20
  • <210> 211 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 211 catctgcttt ttcatggacc   20
  • <210> 212 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 212 tcatctgctt tttcatggac   20
  • <210> 213 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 213 gtcatctgct ttttcatgga   20
  • <210> 214 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 214 agtcatctgc tttttcatgg   20
  • <210> 215 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 215 aagtcatctg ctttttcatg   20
  • <210> 216 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 216 caagtcatct gctttttcat   20
  • <210> 217 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 217 ccaagtcatc tgctttttca   20
  • <210> 218 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 218 cccaagtcat ctgctttttc   20
  • <210> 219 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 219 gcccaagtca tctgcttttt   20
  • <210> 220 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 220 tgcccaagtc atctgctttt   20
  • <210> 221 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 221 ttgcccaagt catctgcttt   20
  • <210> 222 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 222 tttgcccaag tcatctgctt   20
  • <210> 223 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 223 ctttgcccaa gtcatctgct   20
  • <210> 224 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 224 cctttgccca agtcatctgc   20
  • <210> 225 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 225 acctttgccc aagtcatctg   20
  • <210> 226 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 226 cccaattaca ccacaagcca   20
  • <210> 227 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 227 tcccaattac accacaagcc   20
  • <210> 228 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 228 atcccaatta caccacaagc   20
  • <210> 229 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 229 gatcccaatt acaccacaag   20
  • <210> 230 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 230 cgatcccaat tacaccacaa   20
  • <210> 231 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 231 gcgatcccaa ttacaccaca   20
  • <210> 232 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 232 gggcgatccc aattacacca   20
  • <210> 233 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 233 tgggcgatcc caattacacc   20
  • <210> 234 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 234 ttgggcgatc ccaattacac   20
  • <210> 235 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 235 attgggcgat cccaattaca   20
  • <210> 236 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 236 tattgggcga tcccaattac   20
  • <210> 237 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 237 ttattgggcg atcccaatta   20
  • <210> 238 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 238 tttattgggc gatcccaatt   20
  • <210> 239 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 239 gtttattggg cgatcccaat   20
  • <210> 240 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 240 tgtttattgg gcgatcccaa   20
  • <210> 241 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 241 atgtttattg ggcgatccca   20
  • <210> 242 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 242 aatgtttatt gggcgatccc   20
  • <210> 243 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 243 gaatgtttat tgggcgatcc   20
  • <210> 244 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 244 tccaagggaa tgtttattgg   20
  • <210> 245 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 245 atccaaggga atgtttattg   20
  • <210> 246 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 246 catccaaggg aatgtttatt   20
  • <210> 247 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 247 acatccaagg gaatgtttat   20
  • <210> 248 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 248 tacatccaag ggaatgttta   20
  • <210> 249 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 249 ctacatccaa gggaatgttt   20
  • <210> 250 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 250 actacatcca agggaatgtt   20
  • <210> 251 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 251 gactacatcc aagggaatgt   20
  • <210> 252 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 252 agactacatc caagggaatg   20
  • <210> 253 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 253 cagactacat ccaagggaat   20
  • <210> 254 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 254 tcagactaca tccaagggaa   20
  • <210> 255 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 255 ctcagactac atccaaggga   20
  • <210> 256 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 256 gcctcagact acatccaagg   20
  • <210> 257 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 257 ggcctcagac tacatccaag   20
  • <210> 258 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 258 gggcctcaga ctacatccaa   20
  • <210> 259 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 259 caggataaca gatgagttaa   20
  • <210> 260 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 260 gcaggataac agatgagtta   20
  • <210> 261 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 261 agcaggataa cagatgagtt   20
  • <210> 262 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 262 tagcaggata acagatgagt   20
  • <210> 263 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 263 ctagcaggat aacagatgag   20
  • <210> 264 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 264 gctagcagga taacagatga   20
  • <210> 265 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 265 agctagcagg ataacagatg   20
  • <210> 266 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 266 cagctagcag gataacagat   20
  • <210> 267 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 267 acagctagca ggataacaga   20
  • <210> 268 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 268 tacagctagc aggataacag   20
  • <210> 269 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 269 ctacagctag caggataaca   20
  • <210> 270 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 270 tctacagcta gcaggataac   20
  • <210> 271 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 271 ttctacagct agcaggataa   20
  • <210> 272 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 272 tttctacagc tagcaggata   20
  • <210> 273 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 273 atttctacag ctagcaggat   20
  • <210> 274 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 274 catttctaca gctagcagga   20
  • <210> 275 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 275 acatttctac agctagcagg   20
  • <210> 276 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 276 tacatttcta cagctagcag   20
  • <210> 277 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 277 atacatttct acagctagca   20
  • <210> 278 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 278 gatacatttc tacagctagc   20
  • <210> 279 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 279 acagtgttta atgtttatca   20
  • <210> 280 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 280 tacagtgttt aatgtttatc   20
  • <210> 281 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 281 ttacagtgtt taatgtttat   20
  • <210> 282 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 282 attacagtgt ttaatgttta   20
  • <210> 283 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 283 gattacagtg tttaatgttt   20
  • <210> 284 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 284 agattacagt gtttaatgtt   20
  • <210> 285 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 285 aagattacag tgtttaatgt   20
  • <210> 286 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 286 taagattaca gtgtttaatg   20
  • <210> 287 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 287 ttaagattac agtgtttaat   20
  • <210> 288 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 288 caaatcttcc aagtgatcat   20
  • <210> 289 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 289 acaaatcttc caagtgatca   20
  • <210> 290 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 290 tacaaatctt ccaagtgatc   20
  • <210> 291 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 291 tatacaaatc ttccaagtga   20
  • <210> 292 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 292 ctatacaaat cttccaagtg   20
  • <210> 293 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 293 actatacaaa tcttccaagt   20
  • <210> 294 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 294 aactatacaa atcttccaag   20
  • <210> 295 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 295 aaactataca aatcttccaa   20
  • <210> 296 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 296 aaaactatac aaatcttcca   20
  • <210> 297 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 297 taaaactata caaatcttcc   20
  • <210> 298 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 298 ataaaactat acaaatcttc   20
  • <210> 299 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 299 tataaaacta tacaaatctt   20
  • <210> 300 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 300 ttataaaact atacaaatct   20
  • <210> 301 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 301 tttataaaac tatacaaatc   20
  • <210> 302 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 302 ttttataaaa ctatacaaat   20
  • <210> 303 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 303 gttttataaa actatacaaa   20
  • <210> 304 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 304 agttttataa aactatacaa   20
  • <210> 305 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 305 gagttttata aaactataca   20
  • <210> 306 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 306 cattgaaaca gacattttaa   20
  • <210> 307 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 307 gtcattgaaa cagacatttt   20
  • <210> 308 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 308 ggtcattgaa acagacattt   20
  • <210> 309 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 309 aggtcattga aacagacatt   20
  • <210> 310 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 310 caggtcattg aaacagacat   20
  • <210> 311 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 311 acaggtcatt gaaacagaca   20
  • <210> 312 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 312 tacaggtcat tgaaacagac   20
  • <210> 313 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 313 aatacaggtc attgaaacag   20
  • <210> 314 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 314 aaatacaggt cattgaaaca   20
  • <210> 315 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 315 aaaatacagg tcattgaaac   20
  • <210> 316 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 316 caaaatacag gtcattgaaa   20
  • <210> 317 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 317 ccttgccttc tgctcgaaat   20
  • <210> 318 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 318 aataaagttg acctcttttt   20
  • <210> 319 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 319 ctctgatata aaaatcttgt   20
  • <210> 320 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 320 gccccgcggc ggcctcggtc   20
  • <210> 321 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 321 gctatcgcca ttattacaag   20
  • <210> 322 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 322 ctcaaatgtg aaagttgtcc   20
  • <210> 323 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 323 gttctatatt caataaatgc   20
  • <210> 324 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 324 aattaaagtt cccaaataca   20
  • <210> 325 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 325 gatcattaca aaagttaaga   20
  • <210> 326 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 326 ccttctctgc ccttgcagcc   20
  • <210> 327 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 327 acccaaataa ctatgttgta   20
  • <210> 328 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 328 ccaggtttta aacttaacaa   20
  • <210> 329 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 329 atctcaggac taaaataaac   20
  • <210> 330 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 330 aaataactat gttgtagacc   20
  • <210> 331 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 331 aagaaccttt tccagaaaat   20
  • <210> 332 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 332 ggaacagaaa caagtctatg   20
  • <210> 333 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 333 agaaagctat cgccattatt   20
  • <210> 334 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 334 ttcccaaata cattctaaaa   20
  • <210> 335 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 335 aactgctcta ggcctgtgtc   20
  • <210> 336 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 336 aaatggatca aatctgatca   20
  • <210> 337 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 337 gtaggtgcac atcaaaatca   20
  • <210> 338 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 338 tctgatataa aaatcttgtc   20
  • <210> 339 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 339 accatatgaa ctccagaaag   20
  • <210> 340 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 340 aacatcaagg tagttcatga   20
  • <210> 341 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 341 gcaattacag aaatggatca   20
  • <210> 342 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 342 ttttaagcat attccaaagt   20
  • <210> 343 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 343 tcaaccccca gctcaaacac   20
  • <210> 344 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 344 agaaaaataa cattaatcct   20
  • <210> 345 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 345 aagattttaa acacggaata   20
  • <210> 346 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 346 agcagtcaca ttgcccaagt   20
  • <210> 347 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 347 cagtgtttaa tgtttatcag   20
  • <210> 348 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 348 gcaaaataca ggtcattgaa   20
  • <210> 349 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 349 ggcaaaatac aggtcattga   20
  • <210> 350 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 350 tggcaaaata caggtcattg   20
  • <210> 351 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 351 ctggcaaaat acaggtcatt   20
  • <210> 352 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 352 tctggcaaaa tacaggtcat   20
  • <210> 353 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 353 gtctggcaaa atacaggtca   20
  • <210> 354 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 354 agtctggcaa aatacaggtc   20
  • <210> 355 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 355 aagtctggca aaatacaggt   20
  • <210> 356 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 356 taagtctggc aaaatacagg   20
  • <210> 357 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 357 ttaagtctgg caaaatacag   20
  • <210> 358 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 358 gtttaatacc catctgtgat   20
  • <210> 359 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 359 aagtttaata cccatctgtg   20
  • <210> 360 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 360 caagtttaat acccatctgt   20
  • <210> 361 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 361 acaagtttaa tacccatctg   20
  • <210> 362 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 362 gacaagttta atacccatct   20
  • <210> 363 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 363 tgacaagttt aatacccatc   20
  • <210> 364 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 364 ctgacaagtt taatacccat   20
  • <210> 365 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 365 tctgacaagt ttaataccca   20
  • <210> 366 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 366 ttctgacaag tttaataccc   20
  • <210> 367 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 367 attctgacaa gtttaatacc   20
  • <210> 368 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 368 aattctgaca agtttaatac   20
  • <210> 369 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 369 aaattctgac aagtttaata   20
  • <210> 370 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 370 gaaattctga caagtttaat   20
  • <210> 371 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 371 agaaattctg acaagtttaa   20
  • <210> 372 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 372 aagaaattct gacaagttta   20
  • <210> 373 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 373 ttattcacag gcttgaatga   20
  • <210> 374 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 374 tttattcaca ggcttgaatg   20
  • <210> 375 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 375 ttttattcac aggcttgaat   20
  • <210> 376 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 376 tttttattca caggcttgaa   20
  • <210> 377 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 377 gtttttattc acaggcttga   20
  • <210> 378 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 378 gggtttttat tcacaggctt   20
  • <210> 379 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 379 cagggttttt attcacaggc   20
  • <210> 380 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 380 acagggtttt tattcacagg   20
  • <210> 381 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 381 tacagggttt ttattcacag   20
  • <210> 382 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 382 catacagggt ttttattcac   20
  • <210> 383 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 383 gccatacagg gtttttattc   20
  • <210> 384 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 384 tgccatacag ggtttttatt   20
  • <210> 385 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 385 gtgccataca gggtttttat   20
  • <210> 386 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 386 agtgccatac agggttttta   20
  • <210> 387 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 387 tggaaaaact caaatgtgaa   20
  • <210> 388 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 388 tttccctttc ttttccacac   20
  • <210> 389 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 389 tctttccctt tcttttccac   20
  • <210> 390 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 390 taccttctct gcccttgcag   20
  • <210> 391 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 391 gcaagggcca aggctgctgc   20
  • <210> 392 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 392 aaagctaaat tatgaattaa   20
  • <210> 393 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 393 ctaatgaagg ctcagtatga   20
  • <210> 394 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 394 ggagtcaaat gccaaagaac   20
  • <210> 395 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 395 tgaattaaag ttcccaaata   20
  • <210> 396 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 396 acttggtgca ggcagaatat   20
  • <210> 397 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 397 cctctgatat aaaaatcttg   20
  • <210> 398 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 398 aaagttggag agagtttctg   20
  • <210> 399 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 399 tctctgccct tgcagcccaa   20
  • <210> 400 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 400 ttacttggtg caggcagaat   20
  • <210> 401 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 401 aatggagtca aatgccaaag   20
  • <210> 402 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 402 tatgaattaa agttcccaaa   20
  • <210> 403 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 403 agttctatat tcaataaatg   20
  • <210> 404 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 404 tacaagtagt ataccatatg   20
  • <210> 405 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 405 tagccttaga gctgtacaaa   20
  • <210> 406 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 406 gtccccattt gtcaattcct   20
  • <210> 407 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 407 aacctgccta ctggcagagc   20
  • <210> 408 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 408 cttgttccca cactcaatgc   20
  • <210> 409 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 409 acaagtcatg ataacctgca   20
  • <210> 410 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 410 tgttttccaa actcagatct   20
  • <210> 411 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 411 agaacctcat aatattagaa   20
  • <210> 412 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 412 ggttttaaac ttaacaaaat   20
  • <210> 413 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 413 ctctggtgta tttttagtaa   20
  • <210> 414 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 414 tatctctgca tatctggaaa   20
  • <210> 415 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 415 cagccttttt aacccaaaag   20
  • <210> 416 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 416 tggaatgctc cactatccaa   20
  • <210> 417 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 417 cgttcagaag tttgtctctg   20
  • <210> 418 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 418 ctgctcaggg aaggtggaaa   20
  • <210> 419 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 419 tcaagagaag ctaggaaaac   20
  • <210> 420 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 420 tccctttctt ttccacacct   20
  • <210> 421 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 421 ttgttcccac actcaatgca   20
  • <210> 422 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 422 tcaccagcac agcacaacac   20
  • <210> 423 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 423 cctgggatca ttacaaaagt   20
  • <210> 424 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 424 agtagtatac catatgaact   20
  • <210> 425 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 425 tctaatatgg tcaaatgtaa   20
  • <210> 426 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 426 ggttgggctc tggtgtattt   20
  • <210> 427 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 427 tgccctttac ttggtgcagg   20
  • <210> 428 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 428 agagagtttc tgaacaaaga   20
  • <210> 429 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 429 gaatttcagc aattacagaa   20
  • <210> 430 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 430 acaagttaaa caagtcatga   20
  • <210> 431 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 431 tgtgcccttt acttggtgca   20
  • <210> 432 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 432 ttaggaggag gaaaaggacc   20
  • <210> 433 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 433 actggcagag caattttaaa   20
  • <210> 434 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 434 agtcaaatgc caaagaacct   20
  • <210> 435 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 435 aagcatcaga tggattaggg   20
  • <210> 436 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 436 gtccgcggga ccctcaggaa   20
  • <210> 437 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 437 caattacaga aatggatcaa   20
  • <210> 438 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 438 gctgtcaagt aatcactacc   20
  • <210> 439 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 439 agtgcaaagt tggagagagt   20
  • <210> 440 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 440 acttgcttcc aatcccaaat   20
  • <210> 441 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 441 aactcaaatg tgaaagttgt   20
  • <210> 442 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 442 ttttagtaag atcttcaaat   20
  • <210> 443 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 443 atttcagcaa ttacagaaat   20
  • <210> 444 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 444 ttaagtgtcc ccatttgtca   20
  • <210> 445 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 445 ttagcaacct gcctactggc   20
  • <210> 446 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 446 tattacaaga gttaagcatc   20
  • <210> 447 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 447 atgttgaata tacatgtaca   20
  • <210> 448 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 448 tttgtctctg accatcttag   20
  • <210> 449 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 449 ttttccacca gttggtaact   20
  • <210> 450 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 450 caacagcttc ccacaagtta   20
  • <210> 451 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 451 caaatgtgaa agttgtccct   20
  • <210> 452 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 452 gctaccttct ctgcccttgc   20
  • <210> 453 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 453 tcttagcaga acagtgttct   20
  • <210> 454 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 454 atacattcta aaaagaaaca   20
  • <210> 455 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 455 gcacatattt acaagtagta   20
  • <210> 456 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 456 gggtcaccag cacagcacaa   20
  • <210> 457 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 457 gtgcaagggc caaggctgct   20
  • <210> 458 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 458 acctgggttc atgcatggat   20
  • <210> 459 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 459 atcactattt gaaactaaat   20
  • <210> 460 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 460 atacaataaa gttgacctct   20
  • <210> 461 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 461 ttttaaactt aacaaaatgt   20
  • <210> 462 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 462 ctccccgcgc tcccgccacg   20
  • <210> 463 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 463 gaaggctcag tatgaagaga   20
  • <210> 464 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 464 agaaaacagc tgatttacct   20
  • <210> 465 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 465 ccacaagtta aacaagtcat   20
  • <210> 466 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 466 caaatttgca aacaagtagc   20
  • <210> 467 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 467 cctaatttga actgcaagta   20
  • <210> 468 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 468 aaaaaactca tctccccagc   20
  • <210> 469 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 469 aggctcagta tgaagagatc   20
  • <210> 470 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 470 tgttatcaag agcacagggc   20
  • <210> 471 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 471 cctcaaaagg gagatggtaa   20
  • <210> 472 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 472 agtatgggtc accagcacag   20
  • <210> 473 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 473 tcacaatcta gtgcagttac   20
  • <210> 474 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 474 caagtgagaa acccaatcct   20
  • <210> 475 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 475 agaaaatctg gccattttaa   20
  • <210> 476 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 476 acaggtaatg gtgctccgtg   20
  • <210> 477 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 477 tgaaaggctt tcagaaaaca   20
  • <210> 478 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 478 caggcaagtt acaggaagca   20
  • <210> 479 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 479 cagcaagctg cttaactgct   20
  • <210> 480 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 480 tgttgcaaag acattacctt   20
  • <210> 481 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 481 gaaactaaat tagcaagatg   20
  • <210> 482 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 482 tcaagagcac agggccaaaa   20
  • <210> 483 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 483 aggaggagga aaaggacctc   20
  • <210> 484 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 484 cctcagcctt tttaacccaa   20
  • <210> 485 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 485 ctatgttgta gaccaccaca   20
  • <210> 486 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 486 ctccgtggct acatacagaa   20
  • <210> 487 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 487 tttatctgga tctttagaaa   20
  • <210> 488 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 488 aaaaaaagga aagtgaaagt   20
  • <210> 489 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 489 ggttcatgca tggattctca   20
  • <210> 490 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 490 ctgcaaagtg tcacacaaac   20
  • <210> 491 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 491 ttcagaagta ccaaagggta   20
  • <210> 492 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 492 taaaagcatt ccagcatttg   20
  • <210> 493 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 493 tagtatacca tatgaactcc   20
  • <210> 494 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 494 tgcatatctg gaaagctgga   20
  • <210> 495 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 495 cttaactgct ctaggcctgt   20
  • <210> 496 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 496 aggcaccgac cgggcggcac   20
  • <210> 497 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 497 tgcaaagttg gagagagttt   20
  • <210> 498 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 498 tcctcaaaag ggagatggta   20
  • <210> 499 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 499 agtataccat atgaactcca   20
  • <210> 500 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 500 tatttgtaca tgttgaatat   20
  • <210> 501 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 501 acccaaaagg tgtatgtctc   20
  • <210> 502 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 502 ctttggaaaa aaaggaaagt   20
  • <210> 503 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 503 gggagaaagg caggcaagtt   20
  • <210> 504 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 504 ttaagcccag gaagtaaaag   20
  • <210> 505 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 505 agacattacc tttaaacatt   20
  • <210> 506 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 506 gtggcttaag aaatgctccg   20
  • <210> 507 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 507 gtgagaaggg aacagaaaca   20
  • <210> 508 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 508 aaaagcatca gatggattag   20
  • <210> 509 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 509 ttccaccagt tggtaacttc   20
  • <210> 510 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 510 tttttagtaa gatcttcaaa   20
  • <210> 511 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 511 atctgtgtcc aaatcccagg   20
  • <210> 512 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 512 taagatcttc aaataagcta   20
  • <210> 513 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 513 atcaactctt tccctttctt   20
  • <210> 514 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 514 tgtgtcctca aaagggagat   20
  • <210> 515 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 515 tacctcctcc caacaatacc   20
  • <210> 516 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 516 ttctgcttta caactatggc   20
  • <210> 517 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 517 gtacatgttg aatatacatg   20
  • <210> 518 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 518 tttgtggcta atcttaaggt   20
  • <210> 519 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 519 tcctgcctca gcctttttaa   20
  • <210> 520 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 520 cggtgtccgc gggaccctca   20
  • <210> 521 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 521 gaaatggatc aaatctgatc   20
  • <210> 522 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 522 ggtagttcat gagctaaatt   20
  • <210> 523 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 523 aatggagtct cgactagttt   20
  • <210> 524 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 524 caagtatggg tcaccagcac   20
  • <210> 525 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 525 ggtgtccgcg ggaccctcag   20
  • <210> 526 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 526 cgccacgcgc aggcccagcc   20
  • <210> 527 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 527 tctaggcctg tgtcctcaaa   20
  • <210> 528 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 528 actgtcctgg gctaatgaag   20
  • <210> 529 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 529 aagcatcttg ttacctctct   20
  • <210> 530 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 530 gcccaggaag taaaagcatt   20
  • <210> 531 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 531 gtaagatctt caaataagct   20
  • <210> 532 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 532 aaagggagat ggtaatcttg   20
  • <210> 533 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 533 gccaaggctg ctgccttaca   20
  • <210> 534 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 534 cagactaact gttcctgtcc   20
  • <210> 535 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 535 tttgtcaatt cctttaagcc   20
  • <210> 536 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 536 actacctcct cccaacaata   20
  • <210> 537 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 537 tacctctctt catcctttgg   20
  • <210> 538 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 538 actgctctag gcctgtgtcc   20
  • <210> 539 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 539 cctcctccca acaataccca   20
  • <210> 540 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 540 ggcaggcaag ttacaggaag   20
  • <210> 541 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 541 tcgcccactc tggccccaaa   20
  • <210> 542 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 542 cctcgcccac tctggcccca   20
  • <210> 543 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 543 cgcctcgccc actctggccc   20
  • <210> 544 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 544 cgcgcctcgc ccactctggc   20
  • <210> 545 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 545 tccgcgcctc gcccactctg   20
  • <210> 546 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 546 cctccgcgcc tcgcccactc   20
  • <210> 547 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 547 gacctccgcg cctcgcccac   20
  • <210> 548 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 548 cagacctccg cgcctcgccc   20
  • <210> 549 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 549 gccagacctc cgcgcctcgc   20
  • <210> 550 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 550 aggccagacc tccgcgcctc   20
  • <210> 551 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 551 ataggccaga cctccgcgcc   20
  • <210> 552 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 552 ttataggcca gacctccgcg   20
  • <210> 553 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 553 ctttataggc cagacctccg   20
  • <210> 554 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 554 tactttatag gccagacctc   20
  • <210> 555 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 555 actactttat aggccagacc   20
  • <210> 556 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 556 cgactacttt ataggccaga   20
  • <210> 557 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 557 cgcgactact ttataggcca   20
  • <210> 558 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 558 tccgcgacta ctttataggc   20
  • <210> 559 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 559 tctccgcgac tactttatag   20
  • <210> 560 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 560 cgtctccgcg actactttat   20
  • <210> 561 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 561 cccgtctccg cgactacttt   20
  • <210> 562 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 562 accccgtctc cgcgactact   20
  • <210> 563 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 563 gcaccccgtc tccgcgacta   20
  • <210> 564 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 564 cagcaccccg tctccgcgac   20
  • <210> 565 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 565 accagcaccc cgtctccgcg   20
  • <210> 566 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 566 aaaccagcac cccgtctccg   20
  • <210> 567 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 567 gcaaaccagc accccgtctc   20
  • <210> 568 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 568 acgcaaacca gcaccccgtc   20
  • <210> 569 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 569 cgacgcaaac cagcaccccg   20
  • <210> 570 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 570 tacgacgcaa accagcaccc   20
  • <210> 571 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 571 actacgacgc aaaccagcac   20
  • <210> 572 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 572 agactacgac gcaaaccagc   20
  • <210> 573 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 573 ggagactacg acgcaaacca   20
  • <210> 574 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 574 caggagacta cgacgcaaac   20
  • <210> 575 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 575 tgcaggagac tacgacgcaa   20
  • <210> 576 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 576 gctgcaggag actacgacgc   20
  • <210> 577 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 577 gcaacggaaa ccccagacgc   20
  • <210> 578 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 578 ctgcaacgga aaccccagac   20
  • <210> 579 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 579 gactgcaacg gaaaccccag   20
  • <210> 580 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 580 ggactgcaac ggaaacccca   20
  • <210> 581 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 581 aggactgcaa cggaaacccc   20
  • <210> 582 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 582 tccgaggact gcaacggaaa   20
  • <210> 583 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 583 gttccgagga ctgcaacgga   20
  • <210> 584 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 584 tggttccgag gactgcaacg   20
  • <210> 585 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 585 cctggttccg aggactgcaa   20
  • <210> 586 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 586 gtcctggttc cgaggactgc   20
  • <210> 587 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 587 aggtcctggt tccgaggact   20
  • <210> 588 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 588 cgaggtcctg gttccgagga   20
  • <210> 589 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 589 gccgaggtcc tggttccgag   20
  • <210> 590 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 590 acgccgaggt cctggttccg   20
  • <210> 591 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 591 ccacgccgag gtcctggttc   20
  • <210> 592 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 592 ggccacgccg aggtcctggt   20
  • <210> 593 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 593 gctaggccac gccgaggtcc   20
  • <210> 594 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 594 tcgctaggcc acgccgaggt   20
  • <210> 595 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 595 actcgctagg ccacgccgag   20
  • <210> 596 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 596 taactcgcta ggccacgccg   20
  • <210> 597 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 597 cataactcgc taggccacgc   20
  • <210> 598 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 598 gccataactc gctaggccac   20
  • <210> 599 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 599 tcgccataac tcgctaggcc   20
  • <210> 600 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 600 cgtcgccata actcgctagg   20
  • <210> 601 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 601 cagcacgcac acggccttcg   20
  • <210> 602 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 602 gccgtcgccc ttcagcacgc   20
  • <210> 603 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 603 ggccgtcgcc cttcagcacg   20
  • <210> 604 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 604 gggccgtcgc ccttcagcac   20
  • <210> 605 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 605 ctgggccgtc gcccttcagc   20
  • <210> 606 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 606 cactgggccg tcgcccttca   20
  • <210> 607 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 607 tgcactgggc cgtcgccctt   20
  • <210> 608 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 608 cctgcactgg gccgtcgccc   20
  • <210> 609 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 609 atgccctgca ctgggccgtc   20
  • <210> 610 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 610 tgatgccctg cactgggccg   20
  • <210> 611 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 611 gatgatgccc tgcactgggc   20
  • <210> 612 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 612 ttgatgatgc cctgcactgg   20
  • <210> 613 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 613 ggcgatccca attacacc   18
  • <210> 614 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 614 tcgaaattga tgatgccctg   20
  • <210> 615 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 615 gctcgaaatt gatgatgccc   20
  • <210> 616 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 616 ctgctcgaaa ttgatgatgc   20
  • <210> 617 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 617 ttctgctcga aattgatgat   20
  • <210> 618 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 618 ttaatgcttc cccacacctt   20
  • <210> 619 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 619 ctttaatgct tccccacacc   20
  • <210> 620 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 620 tcctttaatg cttccccaca   20
  • <210> 621 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 621 tcagtccttt aatgcttccc   20
  • <210> 622 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 622 agtcagtcct ttaatgcttc   20
  • <210> 623 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 623 tcagtcagtc ctttaatgct   20
  • <210> 624 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 624 cttcagtcag tcctttaatg   20
  • <210> 625 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 625 gccttcagtc agtcctttaa   20
  • <210> 626 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 626 gcaggccttc agtcagtcct   20
  • <210> 627 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 627 atgcaggcct tcagtcagtc   20
  • <210> 628 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 628 ccatgcaggc cttcagtcag   20
  • <210> 629 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 629 catgaacatg gaatccatgc   20
  • <210> 630 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 630 ctcatgaaca tggaatccat   20
  • <210> 631 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 631 aactcatgaa catggaatcc   20
  • <210> 632 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 632 ccaaactcat gaacatggaa   20
  • <210> 633 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 633 ctccaaactc atgaacatgg   20
  • <210> 634 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 634 atctccaaac tcatgaacat   20
  • <210> 635 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 635 ttatctccaa actcatgaac   20
  • <210> 636 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 636 tattatctcc aaactcatga   20
  • <210> 637 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 637 tgtattatct ccaaactcat   20
  • <210> 638 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 638 ctgctgtatt atctccaaac   20
  • <210> 639 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 639 gcctgctgta ttatctccaa   20
  • <210> 640 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 640 cagcctgctg tattatctcc   20
  • <210> 641 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 641 tacagcctgc tgtattatct   20
  • <210> 642 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 642 ggtacagcct gctgtattat   20
  • <210> 643 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 643 ctggtacagc ctgctgtatt   20
  • <210> 644 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 644 cactggtaca gcctgctgta   20
  • <210> 645 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 645 tgcactggta cagcctgctg   20
  • <210> 646 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 646 cctgcactgg tacagcctgc   20
  • <210> 647 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 647 ttctggatag aggattaaag   20
  • <210> 648 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 648 ttttctggat agaggattaa   20
  • <210> 649 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 649 tgttttctgg atagaggatt   20
  • <210> 650 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 650 cgtgttttct ggatagagga   20
  • <210> 651 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 651 accgtgtttt ctggatagag   20
  • <210> 652 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 652 ccaccgtgtt ttctggatag   20
  • <210> 653 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 653 gcccaccgtg ttttctggat   20
  • <210> 654 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 654 tggcccaccg tgttttctgg   20
  • <210> 655 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 655 tttggcccac cgtgttttct   20
  • <210> 656 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 656 cctttggccc accgtgtttt   20
  • <210> 657 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 657 agtctccaac atgcctctct   20
  • <210> 658 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 658 caagtctcca acatgcctct   20
  • <210> 659 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 659 cccaagtctc caacatgcct   20
  • <210> 660 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 660 attgcccaag tctccaacat   20
  • <210> 661 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 661 acattgccca agtctccaac   20
  • <210> 662 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 662 tcacattgcc caagtctcca   20
  • <210> 663 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 663 agtcacattg cccaagtctc   20
  • <210> 664 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 664 gcagtcacat tgcccaagtc   20
  • <210> 665 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 665 cagcagtcac attgcccaag   20
  • <210> 666 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 666 gtcagcagtc acattgccca   20
  • <210> 667 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 667 ttgtcagcag tcacattgcc   20
  • <210> 668 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 668 ctttgtcagc agtcacattg   20
  • <210> 669 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 669 atctttgtca gcagtcacat   20
  • <210> 670 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 670 ccatctttgt cagcagtcac   20
  • <210> 671 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 671 caccatcttt gtcagcagtc   20
  • <210> 672 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 672 cacaccatct ttgtcagcag   20
  • <210> 673 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 673 gccacaccat ctttgtcagc   20
  • <210> 674 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 674 cggccacacc atctttgtca   20
  • <210> 675 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 675 atcggccaca ccatctttgt   20
  • <210> 676 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 676 acatcggcca caccatcttt   20
  • <210> 677 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 677 agacacatcg gccacaccat   20
  • <210> 678 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 678 atagacacat cggccacacc   20
  • <210> 679 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 679 caatagacac atcggccaca   20
  • <210> 680 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 680 ttcaatagac acatcggcca   20
  • <210> 681 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 681 tcttcaatag acacatcggc   20
  • <210> 682 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 682 aatcttcaat agacacatcg   20
  • <210> 683 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 683 agaatcttca atagacacat   20
  • <210> 684 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 684 acagaatctt caatagacac   20
  • <210> 685 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 685 tcacagaatc ttcaatagac   20
  • <210> 686 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 686 gatcacagaa tcttcaatag   20
  • <210> 687 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 687 gagatcacag aatcttcaat   20
  • <210> 688 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 688 gtgagatcac agaatcttca   20
  • <210> 689 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 689 gagtgagatc acagaatctt   20
  • <210> 690 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 690 gagagtgaga tcacagaatc   20
  • <210> 691 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 691 ctgagagtga gatcacagaa   20
  • <210> 692 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 692 tcctgagagt gagatcacag   20
  • <210> 693 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 693 ggtctcctga gagtgagatc   20
  • <210> 694 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 694 atggtctcct gagagtgaga   20
  • <210> 695 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 695 caatggtctc ctgagagtga   20
  • <210> 696 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 696 tgcaatggtc tcctgagagt   20
  • <210> 697 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 697 gatgcaatgg tctcctgaga   20
  • <210> 698 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 698 atgatgcaat ggtctcctga   20
  • <210> 699 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 699 caatgatgca atggtctcct   20
  • <210> 700 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 700 gccaatgatg caatggtctc   20
  • <210> 701 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 701 cggccaatga tgcaatggtc   20
  • <210> 702 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 702 tgcggccaat gatgcaatgg   20
  • <210> 703 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 703 tgtgcggcca atgatgcaat   20
  • <210> 704 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 704 agtgtgcggc caatgatgca   20
  • <210> 705 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 705 ccagtgtgcg gccaatgatg   20
  • <210> 706 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 706 caccagtgtg cggccaatga   20
  • <210> 707 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 707 ggaccaccag tgtgcggcca   20
  • <210> 708 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 708 atggaccacc agtgtgcggc   20
  • <210> 709 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 709 tttcatggac caccagtgtg   20
  • <210> 710 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 710 tttttcatgg accaccagtg   20
  • <210> 711 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 711 gctttttcat ggaccaccag   20
  • <210> 712 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 712 tgtctttgta ctttcttcat   20
  • <210> 713 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 713 cctgtctttg tactttcttc   20
  • <210> 714 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 714 ttcctgtctt tgtactttct   20
  • <210> 715 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 715 gtttcctgtc tttgtacttt   20
  • <210> 716 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 716 aagccaaacg acttccagcg   20
  • <210> 717 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 717 acaagccaaa cgacttccag   20
  • <210> 718 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 718 ccacaagcca aacgacttcc   20
  • <210> 719 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 719 caccacaagc caaacgactt   20
  • <210> 720 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 720 tacaccacaa gccaaacgac   20
  • <210> 721 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 721 attacaccac aagccaaacg   20
  • <210> 722 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 722 caattacacc acaagccaaa   20
  • <210> 723 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 723 aggataacag atgagttaag   20
  • <210> 724 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 724 ggatacattt ctacagctag   20
  • <210> 725 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 725 caggatacat ttctacagct   20
  • <210> 726 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 726 atcaggatac atttctacag   20
  • <210> 727 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 727 ttatcaggat acatttctac   20
  • <210> 728 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 728 gtttatcagg atacatttct   20
  • <210> 729 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 729 atgtttatca ggatacattt   20
  • <210> 730 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 730 taatgtttat caggatacat   20
  • <210> 731 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 731 tttaatgttt atcaggatac   20
  • <210> 732 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 732 tgtttaatgt ttatcaggat   20
  • <210> 733 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 733 agtgtttaat gtttatcagg   20
  • <210> 734 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 734 tttaagatta cagtgtttaa   20
  • <210> 735 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 735 cttttaagat tacagtgttt   20
  • <210> 736 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 736 cacttttaag attacagtgt   20
  • <210> 737 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 737 tacactttta agattacagt   20
  • <210> 738 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 738 attacacttt taagattaca   20
  • <210> 739 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 739 caattacact tttaagatta   20
  • <210> 740 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 740 cacacaatta cacttttaag   20
  • <210> 741 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 741 gtcacacaat tacactttta   20
  • <210> 742 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 742 aagtcacaca attacacttt   20
  • <210> 743 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 743 aaaagtcaca caattacact   20
  • <210> 744 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 744 gaaaaagtca cacaattaca   20
  • <210> 745 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 745 ctgaaaaagt cacacaatta   20
  • <210> 746 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 746 ctctgaaaaa gtcacacaat   20
  • <210> 747 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 747 aactctgaaa aagtcacaca   20
  • <210> 748 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 748 gcaactctga aaaagtcaca   20
  • <210> 749 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 749 aagcaactct gaaaaagtca   20
  • <210> 750 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 750 ttaaagcaac tctgaaaaag   20
  • <210> 751 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 751 ctttaaagca actctgaaaa   20
  • <210> 752 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 752 tactttaaag caactctgaa   20
  • <210> 753 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 753 ggtactttaa agcaactctg   20
  • <210> 754 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 754 caggtacttt aaagcaactc   20
  • <210> 755 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 755 tacaggtact ttaaagcaac   20
  • <210> 756 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 756 actacaggta ctttaaagca   20
  • <210> 757 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 757 tcactacagg tactttaaag   20
  • <210> 758 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 758 tctcactaca ggtactttaa   20
  • <210> 759 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 759 tttctcacta caggtacttt   20
  • <210> 760 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 760 agtttctcac tacaggtact   20
  • <210> 761 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 761 tcagtttctc actacaggta   20
  • <210> 762 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 762 taaatcagtt tctcactaca   20
  • <210> 763 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 763 atcataaatc agtttctcac   20
  • <210> 764 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 764 tgatcataaa tcagtttctc   20
  • <210> 765 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 765 agtgatcata aatcagtttc   20
  • <210> 766 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 766 caagtgatca taaatcagtt   20
  • <210> 767 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 767 tccaagtgat cataaatcag   20
  • <210> 768 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 768 cttccaagtg atcataaatc   20
  • <210> 769 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 769 atcttccaag tgatcataaa   20
  • <210> 770 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 770 aaatcttcca agtgatcata   20
  • <210> 771 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 771 ctgagtttta taaaactata   20
  • <210> 772 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 772 ttaactgagt tttataaaac   20
  • <210> 773 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 773 ttttaactga gttttataaa   20
  • <210> 774 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 774 cattttaact gagttttata   20
  • <210> 775 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 775 gacattttaa ctgagtttta   20
  • <210> 776 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 776 cagacatttt aactgagttt   20
  • <210> 777 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 777 aacagacatt ttaactgagt   20
  • <210> 778 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 778 gaaacagaca ttttaactga   20
  • <210> 779 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 779 ttgaaacaga cattttaact   20
  • <210> 780 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 780 tttaagtctg gcaaaataca   20
  • <210> 781 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 781 gatttaagtc tggcaaaata   20
  • <210> 782 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 782 gtgatttaag tctggcaaaa   20
  • <210> 783 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 783 ctgtgattta agtctggcaa   20
  • <210> 784 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 784 atctgtgatt taagtctggc   20
  • <210> 785 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 785 acccatctgt gatttaagtc   20
  • <210> 786 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 786 atacccatct gtgatttaag   20
  • <210> 787 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 787 taatacccat ctgtgattta   20
  • <210> 788 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 788 aaagaaattc tgacaagttt   20
  • <210> 789 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 789 acaaagaaat tctgacaagt   20
  • <210> 790 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 790 tgacaaagaa attctgacaa   20
  • <210> 791 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 791 aatgacaaag aaattctgac   20
  • <210> 792 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 792 tgaatgacaa agaaattctg   20
  • <210> 793 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 793 cttgaatgac aaagaaattc   20
  • <210> 794 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 794 ggcttgaatg acaaagaaat   20
  • <210> 795 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 795 caggcttgaa tgacaaagaa   20
  • <210> 796 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 796 cacaggcttg aatgacaaag   20
  • <210> 797 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 797 ttcacaggct tgaatgacaa   20
  • <210> 798 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 798 tattcacagg cttgaatgac   20
  • <210> 799 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 799 ataagtgcca tacagggttt   20
  • <210> 800 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 800 cataataagt gccatacagg   20
  • <210> 801 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 801 tagcctcata ataagtgcca   20
  • <210> 802 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 802 aatagcctca taataagtgc   20
  • <210> 803 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 803 ttaatagcct cataataagt   20
  • <210> 804 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 804 tcttttaata gcctcataat   20
  • <210> 805 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 805 attcttttaa tagcctcata   20
  • <210> 806 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 806 ttggattctt ttaatagcct   20
  • <210> 807 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 807 atttggattc ttttaatagc   20
  • <210> 808 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 808 gaatttggat tcttttaata   20
  • <210> 809 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 809 ttgaatttgg attcttttaa   20
  • <210> 810 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 810 gtttgaattt ggattctttt   20
  • <210> 811 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 811 tagtttgaat ttggattctt   20
  • <210> 812 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 812 tttagtttga atttggattc   20
  • <210> 813 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 813 tttttagttt gaatttggat   20
  • <210> 814 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 814 tttttttagt ttgaatttgg   20
  • <210> 815 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 815 cgtttcctgt ctttgtactt   20
  • <210> 816 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 816 caagccaaac gacttccagc   20
  • <210> 817 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 817 cacaagccaa acgacttcca   20
  • <210> 818 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 818 accacaagcc aaacgacttc   20
  • <210> 819 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 819 acaccacaag ccaaacgact   20
  • <210> 820 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 820 ttacaccaca agccaaacga   20
  • <210> 821 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 821 ggataacaga tgagttaagg   20
  • <210> 822 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 822 aggatacatt tctacagcta   20
  • <210> 823 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 823 tcaggataca tttctacagc   20
  • <210> 824 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 824 tatcaggata catttctaca   20
  • <210> 825 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 825 tgtttatcag gatacatttc   20
  • <210> 826 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 826 aatgtttatc aggatacatt   20
  • <210> 827 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 827 ttaatgttta tcaggataca   20
  • <210> 828 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 828 gtttaatgtt tatcaggata   20
  • <210> 829 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 829 gtgtttaatg tttatcagga   20
  • <210> 830 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 830 ttttaagatt acagtgttta   20
  • <210> 831 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 831 acttttaaga ttacagtgtt   20
  • <210> 832 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 832 acacttttaa gattacagtg   20
  • <210> 833 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 833 ttacactttt aagattacag   20
  • <210> 834 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 834 aattacactt ttaagattac   20
  • <210> 835 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 835 acacaattac acttttaaga   20
  • <210> 836 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 836 tcacacaatt acacttttaa   20
  • <210> 837 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 837 aaagtcacac aattacactt   20
  • <210> 838 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 838 tgaaaaagtc acacaattac   20
  • <210> 839 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 839 tctgaaaaag tcacacaatt   20
  • <210> 840 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 840 actctgaaaa agtcacacaa   20
  • <210> 841 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 841 agcaactctg aaaaagtcac   20
  • <210> 842 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 842 actttaaagc aactctgaaa   20
  • <210> 843 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 843 gtactttaaa gcaactctga   20
  • <210> 844 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 844 aggtacttta aagcaactct   20
  • <210> 845 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 845 cactacaggt actttaaagc   20
  • <210> 846 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 846 ttctcactac aggtacttta   20
  • <210> 847 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 847 gtttctcact acaggtactt   20
  • <210> 848 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 848 cagtttctca ctacaggtac   20
  • <210> 849 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 849 atcagtttct cactacaggt   20
  • <210> 850 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 850 aaatcagttt ctcactacag   20
  • <210> 851 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 851 tcataaatca gtttctcact   20
  • <210> 852 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 852 gtgatcataa atcagtttct   20
  • <210> 853 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 853 aagtgatcat aaatcagttt   20
  • <210> 854 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 854 ccaagtgatc ataaatcagt   20
  • <210> 855 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 855 ttccaagtga tcataaatca   20
  • <210> 856 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 856 tcttccaagt gatcataaat   20
  • <210> 857 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 857 taactgagtt ttataaaact   20
  • <210> 858 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 858 aaacagacat tttaactgag   20
  • <210> 859 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 859 tgaaacagac attttaactg   20
  • <210> 860 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 860 atttaagtct ggcaaaatac   20
  • <210> 861 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 861 tgtgatttaa gtctggcaaa   20
  • <210> 862 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 862 tctgtgattt aagtctggca   20
  • <210> 863 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 863 catctgtgat ttaagtctgg   20
  • <210> 864 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 864 cccatctgtg atttaagtct   20
  • <210> 865 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 865 tacccatctg tgatttaagt   20
  • <210> 866 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 866 aatacccatc tgtgatttaa   20
  • <210> 867 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 867 ttaataccca tctgtgattt   20
  • <210> 868 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 868 gacaaagaaa ttctgacaag   20
  • <210> 869 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 869 gaatgacaaa gaaattctga   20
  • <210> 870 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 870 aggcttgaat gacaaagaaa   20
  • <210> 871 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 871 taagtgccat acagggtttt   20
  • <210> 872 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 872 ataataagtg ccatacaggg   20
  • <210> 873 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 873 cctcataata agtgccatac   20
  • <210> 874 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 874 agcctcataa taagtgccat   20
  • <210> 875 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 875 atagcctcat aataagtgcc   20
  • <210> 876 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 876 cttttaatag cctcataata   20
  • <210> 877 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 877 ttcttttaat agcctcataa   20
  • <210> 878 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 878 gattctttta atagcctcat   20
  • <210> 879 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 879 tggattcttt taatagcctc   20
  • <210> 880 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 880 tttggattct tttaatagcc   20
  • <210> 881 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 881 aatttggatt cttttaatag   20
  • <210> 882 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 882 tgaatttgga ttcttttaat   20
  • <210> 883 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 883 ttagtttgaa tttggattct   20
  • <210> 884 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 884 ttttagtttg aatttggatt   20
  • <210> 885 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 885 ttttttagtt tgaatttgga   20
  • <210> 886 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 886 cagtccttta atgcttcccc   20
  • <210> 887 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 887 gtcagtcctt taatgcttcc   20
  • <210> 888 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 888 cagtcagtcc tttaatgctt   20
  • <210> 889 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 889 ttcagtcagt cctttaatgc   20
  • <210> 890 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 890 ggccttcagt cagtccttta   20
  • <210> 891 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 891 tgcaggcctt cagtcagtcc   20
  • <210> 892 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 892 catgcaggcc ttcagtcagt   20
  • <210> 893 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 893 tcatgaacat ggaatccatg   20
  • <210> 894 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 894 actcatgaac atggaatcca   20
  • <210> 895 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 895 ctgtattatc tccaaactca   20
  • <210> 896 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 896 actggtacag cctgctgtat   20
  • <210> 897 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 897 gcactggtac agcctgctgt   20
  • <210> 898 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 898 ctgcactggt acagcctgct   20
  • <210> 899 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 899 acctgcactg gtacagcctg   20
  • <210> 900 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 900 tttctggata gaggattaaa   20
  • <210> 901 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 901 gttttctgga tagaggatta   20
  • <210> 902 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 902 ccgtgttttc tggatagagg   20
  • <210> 903 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 903 caccgtgttt tctggataga   20
  • <210> 904 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 904 cccaccgtgt tttctggata   20
  • <210> 905 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 905 ggcccaccgt gttttctgga   20
  • <210> 906 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 906 ttggcccacc gtgttttctg   20
  • <210> 907 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 907 ctttggccca ccgtgttttc   20
  • <210> 908 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 908 tcctttggcc caccgtgttt   20
  • <210> 909 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 909 aagtctccaa catgcctctc   20
  • <210> 910 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 910 gcccaagtct ccaacatgcc   20
  • <210> 911 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 911 ttgcccaagt ctccaacatg   20
  • <210> 912 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 912 cattgcccaa gtctccaaca   20
  • <210> 913 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 913 cagtcacatt gcccaagtct   20
  • <210> 914 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 914 tcagcagtca cattgcccaa   20
  • <210> 915 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 915 tgtcagcagt cacattgccc   20
  • <210> 916 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 916 tttgtcagca gtcacattgc   20
  • <210> 917 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 917 tctttgtcag cagtcacatt   20
  • <210> 918 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 918 catctttgtc agcagtcaca   20
  • <210> 919 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 919 accatctttg tcagcagtca   20
  • <210> 920 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 920 ccacaccatc tttgtcagca   20
  • <210> 921 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 921 ggccacacca tctttgtcag   20
  • <210> 922 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 922 cacatcggcc acaccatctt   20
  • <210> 923 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 923 gacacatcgg ccacaccatc   20
  • <210> 924 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 924 aatagacaca tcggccacac   20
  • <210> 925 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 925 tcaatagaca catcggccac   20
  • <210> 926 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 926 cttcaataga cacatcggcc   20
  • <210> 927 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 927 atcttcaata gacacatcgg   20
  • <210> 928 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 928 gaatcttcaa tagacacatc   20
  • <210> 929 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 929 cagaatcttc aatagacaca   20
  • <210> 930 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 930 cacagaatct tcaatagaca   20
  • <210> 931 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 931 atcacagaat cttcaataga   20
  • <210> 932 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 932 agatcacaga atcttcaata   20
  • <210> 933 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 933 tgagatcaca gaatcttcaa   20
  • <210> 934 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 934 agtgagatca cagaatcttc   20
  • <210> 935 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 935 tgagagtgag atcacagaat   20
  • <210> 936 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 936 gtctcctgag agtgagatca   20
  • <210> 937 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 937 tggtctcctg agagtgagat   20
  • <210> 938 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 938 aatggtctcc tgagagtgag   20
  • <210> 939 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 939 gcaatggtct cctgagagtg   20
  • <210> 940 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 940 atgcaatggt ctcctgagag   20
  • <210> 941 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 941 tgatgcaatg gtctcctgag   20
  • <210> 942 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 942 aatgatgcaa tggtctcctg   20
  • <210> 943 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 943 ccaatgatgc aatggtctcc   20
  • <210> 944 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 944 ggccaatgat gcaatggtct   20
  • <210> 945 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 945 gcggccaatg atgcaatggt   20
  • <210> 946 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 946 gtgcggccaa tgatgcaatg   20
  • <210> 947 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 947 gtgtgcggcc aatgatgcaa   20
  • <210> 948 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 948 cagtgtgcgg ccaatgatgc   20
  • <210> 949 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 949 accagtgtgc ggccaatgat   20
  • <210> 950 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 950 ccaccagtgt gcggccaatg   20
  • <210> 951 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 951 gaccaccagt gtgcggccaa   20
  • <210> 952 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 952 tggaccacca gtgtgcggcc   20
  • <210> 953 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 953 ttcatggacc accagtgtgc   20
  • <210> 954 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 954 ttttcatgga ccaccagtgt   20
  • <210> 955 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 955 ctttttcatg gaccaccagt   20
  • <210> 956 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 956 ccactctggc cccaaac   17
  • <210> 957 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 957 cccactctgg ccccaaa   17
  • <210> 958 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 958 gcccactctg gccccaa   17
  • <210> 959 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 959 cgcccactct ggcccca   17
  • <210> 960 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 960 cgactacttt ataggcc   17
  • <210> 961 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 961 gcgactactt tataggc   17
  • <210> 962 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 962 cgcgactact ttatagg   17
  • <210> 963 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 963 ccgcgactac tttatag   17
  • <210> 964 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 964 cgctgcagga gactacg   17
  • <210> 965 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 965 acgctgcagg agactac   17
  • <210> 966 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 966 tcgcccttca gcacgca   17
  • <210> 967 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 967 gtcgcccttc agcacgc   17
  • <210> 968 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 968 cgtcgccctt cagcacg   17
  • <210> 969 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 969 ccgtcgccct tcagcac   17
  • <210> 970 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 970 gccgtcgccc ttcagca   17
  • <210> 971 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 971 tctgctcgaa attgatg   17
  • <210> 972 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 972 ttctgctcga aattgat   17
  • <210> 973 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 973 cttctgctcg aaattga   17
  • <210> 974 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 974 ccttctgctc gaaattg   17
  • <210> 975 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 975 tccttctgct cgaaatt   17
  • <210> 976 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 976 ttccttctgc tcgaaat   17
  • <210> 977 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 977 tttccttctg ctcgaaa   17
  • <210> 978 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 978 ctttccttct gctcgaa   17
  • <210> 979 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 979 actttccttc tgctcga   17
  • <210> 980 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 980 tactttcctt ctgctcg   17
  • <210> 981 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 981 ttactttcct tctgctc   17
  • <210> 982 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 982 attactttcc ttctgct   17
  • <210> 983 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 983 cattactttc cttctgc   17
  • <210> 984 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 984 ccattacttt ccttctg   17
  • <210> 985 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 985 tccattactt tccttct   17
  • <210> 986 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 986 gtccattact ttccttc   17
  • <210> 987 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 987 ggtccattac tttcctt   17
  • <210> 988 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 988 tggtccatta ctttcct   17
  • <210> 989 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 989 ctggtccatt actttcc   17
  • <210> 990 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 990 actggtccat tactttc   17
  • <210> 991 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 991 cactggtcca ttacttt   17
  • <210> 992 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 992 tcactggtcc attactt   17
  • <210> 993 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 993 ttcactggtc cattact   17
  • <210> 994 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 994 cttcactggt ccattac   17
  • <210> 995 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 995 ccttcactgg tccatta   17
  • <210> 996 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 996 accttcactg gtccatt   17
  • <210> 997 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 997 caccttcact ggtccat   17
  • <210> 998 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 998 acaccttcac tggtcca   17
  • <210> 999 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 999 cacaccttca ctggtcc   17
  • <210> 1000 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1000 ccacaccttc actggtc   17
  • <210> 1001 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1001 cccacacctt cactggt   17
  • <210> 1002 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1002 ccccacacct tcactgg   17
  • <210> 1003 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1003 ttccccacac cttcact   17
  • <210> 1004 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1004 cttccccaca ccttcac   17
  • <210> 1005 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1005 gcttccccac accttca   17
  • <210> 1006 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1006 tgcttcccca caccttc   17
  • <210> 1007 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1007 atgcttcccc acacctt   17
  • <210> 1008 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1008 aatgcttccc cacacct   17
  • <210> 1009 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1009 taatgcttcc ccacacc   17
  • <210> 1010 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1010 atgcaggcct tcagtca   17
  • <210> 1011 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1011 catgcaggcc ttcagtc   17
  • <210> 1012 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1012 ccatgcaggc cttcagt   17
  • <210> 1013 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1013 tccatgcagg ccttcag   17
  • <210> 1014 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1014 atccatgcag gccttca   17
  • <210> 1015 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1015 aatccatgca ggccttc   17
  • <210> 1016 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1016 gaatccatgc aggcctt   17
  • <210> 1017 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1017 ggaatccatg caggcct   17
  • <210> 1018 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1018 tggaatccat gcaggcc   17
  • <210> 1019 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1019 atggaatcca tgcaggc   17
  • <210> 1020 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1020 catggaatcc atgcagg   17
  • <210> 1021 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1021 acatggaatc catgcag   17
  • <210> 1022 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1022 aacatggaat ccatgca   17
  • <210> 1023 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1023 gaacatggaa tccatgc   17
  • <210> 1024 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1024 tgaacatgga atccatg   17
  • <210> 1025 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1025 atgaacatgg aatccat   17
  • <210> 1026 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1026 ctgcactggt acagcct   17
  • <210> 1027 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1027 cctgcactgg tacagcc   17
  • <210> 1028 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1028 acctgcactg gtacagc   17
  • <210> 1029 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1029 gacctgcact ggtacag   17
  • <210> 1030 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1030 ggacctgcac tggtaca   17
  • <210> 1031 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1031 aggacctgca ctggtac   17
  • <210> 1032 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1032 gaggacctgc actggta   17
  • <210> 1033 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1033 tgaggacctg cactggt   17
  • <210> 1034 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1034 gtgaggacct gcactgg   17
  • <210> 1035 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1035 agtgaggacc tgcactg   17
  • <210> 1036 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1036 aagtgaggac ctgcact   17
  • <210> 1037 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1037 aaagtgagga cctgcac   17
  • <210> 1038 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1038 taaagtgagg acctgca   17
  • <210> 1039 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1039 ttaaagtgag gacctgc   17
  • <210> 1040 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1040 attaaagtga ggacctg   17
  • <210> 1041 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1041 gattaaagtg aggacct   17
  • <210> 1042 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1042 ggattaaagt gaggacc   17
  • <210> 1043 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1043 aggattaaag tgaggac   17
  • <210> 1044 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1044 gaggattaaa gtgagga   17
  • <210> 1045 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1045 agaggattaa agtgagg   17
  • <210> 1046 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1046 tagaggatta aagtgag   17
  • <210> 1047 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1047 atagaggatt aaagtga   17
  • <210> 1048 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1048 gatagaggat taaagtg   17
  • <210> 1049 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1049 ggatagagga ttaaagt   17
  • <210> 1050 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1050 tggatagagg attaaag   17
  • <210> 1051 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1051 ctggatagag gattaaa   17
  • <210> 1052 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1052 tctggataga ggattaa   17
  • <210> 1053 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1053 ctttggccca ccgtgtt   17
  • <210> 1054 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1054 cctttggccc accgtgt   17
  • <210> 1055 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1055 tcctttggcc caccgtg   17
  • <210> 1056 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1056 atcctttggc ccaccgt   17
  • <210> 1057 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1057 catcctttgg cccaccg   17
  • <210> 1058 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1058 tcatcctttg gcccacc   17
  • <210> 1059 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1059 ttcatccttt ggcccac   17
  • <210> 1060 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1060 cttcatcctt tggccca   17
  • <210> 1061 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1061 tcttcatcct ttggccc   17
  • <210> 1062 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1062 ctcttcatcc tttggcc   17
  • <210> 1063 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1063 tctcttcatc ctttggc   17
  • <210> 1064 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1064 ctctcttcat cctttgg   17
  • <210> 1065 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1065 tgcctctctt catcctt   17
  • <210> 1066 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1066 atgcctctct tcatcct   17
  • <210> 1067 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1067 catgcctctc ttcatcc   17
  • <210> 1068 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1068 acatgcctct cttcatc   17
  • <210> 1069 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1069 aacatgcctc tcttcat   17
  • <210> 1070 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1070 caacatgcct ctcttca   17
  • <210> 1071 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1071 ccaacatgcc tctcttc   17
  • <210> 1072 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1072 tccaacatgc ctctctt   17
  • <210> 1073 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1073 ctccaacatg cctctct   17
  • <210> 1074 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1074 tctccaacat gcctctc   17
  • <210> 1075 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1075 gtctccaaca tgcctct   17
  • <210> 1076 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1076 agcagtcaca ttgccca   17
  • <210> 1077 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1077 cagcagtcac attgccc   17
  • <210> 1078 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1078 agacacatcg gccacac   17
  • <210> 1079 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1079 cttcaataga cacatcg   17
  • <210> 1080 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1080 gagatcacag aatcttc   17
  • <210> 1081 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1081 tttttcatgg accacca   17
  • <210> 1082 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1082 ctttttcatg gaccacc   17
  • <210> 1083 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1083 gctttttcat ggaccac   17
  • <210> 1084 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1084 tgctttttca tggacca   17
  • <210> 1085 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1085 ctgctttttc atggacc   17
  • <210> 1086 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1086 tctgcttttt catggac   17
  • <210> 1087 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1087 atctgctttt tcatgga   17
  • <210> 1088 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1088 catctgcttt ttcatgg   17
  • <210> 1089 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1089 tcatctgctt tttcatg   17
  • <210> 1090 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1090 gtcatctgct ttttcat   17
  • <210> 1091 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1091 agtcatctgc tttttca   17
  • <210> 1092 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1092 aagtcatctg ctttttc   17
  • <210> 1093 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1093 caagtcatct gcttttt   17
  • <210> 1094 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1094 ccaagtcatc tgctttt   17
  • <210> 1095 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1095 cccaagtcat ctgcttt   17
  • <210> 1096 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1096 gcccaagtca tctgctt   17
  • <210> 1097 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1097 tgcccaagtc atctgct   17
  • <210> 1098 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1098 ttgcccaagt catctgc   17
  • <210> 1099 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1099 ccacctttgc ccaagtc   17
  • <210> 1100 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1100 tccacctttg cccaagt   17
  • <210> 1101 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1101 ttccaccttt gcccaag   17
  • <210> 1102 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1102 tttccacctt tgcccaa   17
  • <210> 1103 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1103 atttccacct ttgccca   17
  • <210> 1104 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1104 catttccacc tttgccc   17
  • <210> 1105 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1105 tcatttccac ctttgcc   17
  • <210> 1106 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1106 ttcatttcca cctttgc   17
  • <210> 1107 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1107 tcttcatttc caccttt   17
  • <210> 1108 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1108 ctttcttcat ttccacc   17
  • <210> 1109 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1109 actttcttca tttccac   17
  • <210> 1110 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1110 tactttcttc atttcca   17
  • <210> 1111 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1111 aattacacca caagcca   17
  • <210> 1112 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1112 caattacacc acaagcc   17
  • <210> 1113 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1113 ccaattacac cacaagc   17
  • <210> 1114 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1114 cccaattaca ccacaag   17
  • <210> 1115 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1115 gatcccaatt acaccac   17
  • <210> 1116 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1116 cgatcccaat tacacca   17
  • <210> 1117 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1117 gcgatcccaa ttacacc   17
  • <210> 1118 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1118 ggcgatccca attacac   17
  • <210> 1119 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1119 gggcgatccc aattaca   17
  • <210> 1120 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1120 tgggcgatcc caattac   17
  • <210> 1121 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1121 ttgggcgatc ccaatta   17
  • <210> 1122 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1122 attgggcgat cccaatt   17
  • <210> 1123 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1123 tattgggcga tcccaat   17
  • <210> 1124 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1124 ttattgggcg atcccaa   17
  • <210> 1125 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1125 tttattgggc gatccca   17
  • <210> 1126 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1126 gtttattggg cgatccc   17
  • <210> 1127 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1127 tgtttattgg gcgatcc   17
  • <210> 1128 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1128 atgtttattg ggcgatc   17
  • <210> 1129 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1129 aatgtttatt gggcgat   17
  • <210> 1130 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1130 gaatgtttat tgggcga   17
  • <210> 1131 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1131 ggaatgttta ttgggcg   17
  • <210> 1132 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1132 aagggaatgt ttattgg   17
  • <210> 1133 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1133 caagggaatg tttattg   17
  • <210> 1134 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1134 ccaagggaat gtttatt   17
  • <210> 1135 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1135 tccaagggaa tgtttat   17
  • <210> 1136 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1136 atccaaggga atgttta   17
  • <210> 1137 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1137 catccaaggg aatgttt   17
  • <210> 1138 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1138 acatccaagg gaatgtt   17
  • <210> 1139 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1139 tacatccaag ggaatgt   17
  • <210> 1140 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1140 ctacatccaa gggaatg   17
  • <210> 1141 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1141 actacatcca agggaat   17
  • <210> 1142 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1142 gactacatcc aagggaa   17
  • <210> 1143 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1143 agactacatc caaggga   17
  • <210> 1144 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1144 cagactacat ccaaggg   17
  • <210> 1145 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1145 tcagactaca tccaagg   17
  • <210> 1146 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1146 ctcagactac atccaag   17
  • <210> 1147 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1147 cctcagacta catccaa   17
  • <210> 1148 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1148 gcctcagact acatcca   17
  • <210> 1149 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1149 ggcctcagac tacatcc   17
  • <210> 1150 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1150 gggcctcaga ctacatc   17
  • <210> 1151 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1151 gataacagat gagttaa   17
  • <210> 1152 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1152 ggataacaga tgagtta   17
  • <210> 1153 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1153 aggataacag atgagtt   17
  • <210> 1154 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1154 caggataaca gatgagt   17
  • <210> 1155 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1155 gcaggataac agatgag   17
  • <210> 1156 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1156 agcaggataa cagatga   17
  • <210> 1157 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1157 tagcaggata acagatg   17
  • <210> 1158 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1158 ctagcaggat aacagat   17
  • <210> 1159 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1159 gctagcagga taacaga   17
  • <210> 1160 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1160 agctagcagg ataacag   17
  • <210> 1161 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1161 cagctagcag gataaca   17
  • <210> 1162 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1162 acagctagca ggataac   17
  • <210> 1163 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1163 tacagctagc aggataa   17
  • <210> 1164 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1164 ctacagctag caggata   17
  • <210> 1165 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1165 tctacagcta gcaggat   17
  • <210> 1166 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1166 ttctacagct agcagga   17
  • <210> 1167 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1167 tttctacagc tagcagg   17
  • <210> 1168 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1168 atttctacag ctagcag   17
  • <210> 1169 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1169 catttctaca gctagca   17
  • <210> 1170 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1170 atacatttct acagcta   17
  • <210> 1171 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1171 gatacatttc tacagct   17
  • <210> 1172 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1172 gtgtttaatg tttatca   17
  • <210> 1173 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1173 agtgtttaat gtttatc   17
  • <210> 1174 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1174 cagtgtttaa tgtttat   17
  • <210> 1175 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1175 acagtgttta atgttta   17
  • <210> 1176 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1176 tacagtgttt aatgttt   17
  • <210> 1177 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1177 ttacagtgtt taatgtt   17
  • <210> 1178 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1178 attacagtgt ttaatgt   17
  • <210> 1179 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1179 gattacagtg tttaatg   17
  • <210> 1180 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1180 agattacagt gtttaat   17
  • <210> 1181 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1181 aagattacag tgtttaa   17
  • <210> 1182 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1182 taagattaca gtgttta   17
  • <210> 1183 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1183 ttaagattac agtgttt   17
  • <210> 1184 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1184 atcttccaag tgatcat   17
  • <210> 1185 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1185 aatcttccaa gtgatca   17
  • <210> 1186 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1186 aaatcttcca agtgatc   17
  • <210> 1187 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1187 caaatcttcc aagtgat   17
  • <210> 1188 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1188 tacaaatctt ccaagtg   17
  • <210> 1189 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1189 atacaaatct tccaagt   17
  • <210> 1190 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1190 tatacaaatc ttccaag   17
  • <210> 1191 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1191 ctatacaaat cttccaa   17
  • <210> 1192 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1192 actatacaaa tcttcca   17
  • <210> 1193 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1193 aactatacaa atcttcc   17
  • <210> 1194 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1194 aaactataca aatcttc   17
  • <210> 1195 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1195 ataaaactat acaaatc   17
  • <210> 1196 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1196 gttttataaa actatac   17
  • <210> 1197 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1197 gagttttata aaactat   17
  • <210> 1198 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1198 attgaaacag acatttt   17
  • <210> 1199 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1199 cattgaaaca gacattt   17
  • <210> 1200 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1200 tcattgaaac agacatt   17
  • <210> 1201 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1201 gtcattgaaa cagacat   17
  • <210> 1202 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1202 ggtcattgaa acagaca   17
  • <210> 1203 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1203 aggtcattga aacagac   17
  • <210> 1204 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1204 caggtcattg aaacaga   17
  • <210> 1205 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1205 acaggtcatt gaaacag   17
  • <210> 1206 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1206 tacaggtcat tgaaaca   17
  • <210> 1207 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1207 atacaggtca ttgaaac   17
  • <210> 1208 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1208 aatacaggtc attgaaa   17
  • <210> 1209 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1209 aaatacaggt cattgaa   17
  • <210> 1210 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1210 aaaatacagg tcattga   17
  • <210> 1211 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1211 caaaatacag gtcattg   17
  • <210> 1212 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1212 gcaaaataca ggtcatt   17
  • <210> 1213 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1213 ggcaaaatac aggtcat   17
  • <210> 1214 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1214 tggcaaaata caggtca   17
  • <210> 1215 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1215 ctggcaaaat acaggtc   17
  • <210> 1216 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1216 tctggcaaaa tacaggt   17
  • <210> 1217 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1217 gtctggcaaa atacagg   17
  • <210> 1218 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1218 agtctggcaa aatacag   17
  • <210> 1219 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1219 aagtctggca aaataca   17
  • <210> 1220 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1220 taagtctggc aaaatac   17
  • <210> 1221 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1221 ttaagtctgg caaaata   17
  • <210> 1222 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1222 aatacccatc tgtgatt   17
  • <210> 1223 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1223 taatacccat ctgtgat   17
  • <210> 1224 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1224 ttaataccca tctgtga   17
  • <210> 1225 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1225 tttaataccc atctgtg   17
  • <210> 1226 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1226 gtttaatacc catctgt   17
  • <210> 1227 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1227 agtttaatac ccatctg   17
  • <210> 1228 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1228 aagtttaata cccatct   17
  • <210> 1229 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1229 caagtttaat acccatc   17
  • <210> 1230 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1230 acaagtttaa tacccat   17
  • <210> 1231 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1231 gacaagttta ataccca   17
  • <210> 1232 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1232 tgacaagttt aataccc   17
  • <210> 1233 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1233 ctgacaagtt taatacc   17
  • <210> 1234 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1234 tctgacaagt ttaatac   17
  • <210> 1235 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1235 ttctgacaag tttaata   17
  • <210> 1236 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1236 attctgacaa gtttaat   17
  • <210> 1237 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1237 aattctgaca agtttaa   17
  • <210> 1238 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1238 aaattctgac aagttta   17
  • <210> 1239 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1239 gaaattctga caagttt   17
  • <210> 1240 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1240 agaaattctg acaagtt   17
  • <210> 1241 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1241 aagaaattct gacaagt   17
  • <210> 1242 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1242 ttcacaggct tgaatga   17
  • <210> 1243 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1243 attcacaggc ttgaatg   17
  • <210> 1244 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1244 tattcacagg cttgaat   17
  • <210> 1245 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1245 ttattcacag gcttgaa   17
  • <210> 1246 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1246 tttattcaca ggcttga   17
  • <210> 1247 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1247 ttttattcac aggcttg   17
  • <210> 1248 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1248 tttttattca caggctt   17
  • <210> 1249 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1249 gtttttattc acaggct   17
  • <210> 1250 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1250 ggtttttatt cacaggc   17
  • <210> 1251 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1251 gggtttttat tcacagg   17
  • <210> 1252 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1252 agggttttta ttcacag   17
  • <210> 1253 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1253 cagggttttt attcaca   17
  • <210> 1254 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1254 acagggtttt tattcac   17
  • <210> 1255 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1255 tacagggttt ttattca   17
  • <210> 1256 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1256 atacagggtt tttattc   17
  • <210> 1257 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1257 catacagggt ttttatt   17
  • <210> 1258 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1258 ccatacaggg tttttat   17
  • <210> 1259 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1259 gccatacagg gttttta   17
  • <210> 1260 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1260 tgccatacag ggttttt   17
  • <210> 1261 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1261 gtgccataca gggtttt   17
  • <210> 1262 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1262 agtgccatac agggttt   17
  • <210> 1263 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1263 ttggattctt ttaatag   17
  • <210> 1264 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1264 ttttagtttg aatttgg   17
  • <210> 1265 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1265 ctcgcccact ctggccccaa   20
  • <210> 1266 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1266 gcctcgccca ctctggcccc   20
  • <210> 1267 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1267 gcgcctcgcc cactctggcc   20
  • <210> 1268 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1268 ccgcgcctcg cccactctgg   20
  • <210> 1269 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1269 ctccgcgcct cgcccactct   20
  • <210> 1270 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1270 acctccgcgc ctcgcccact   20
  • <210> 1271 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1271 agacctccgc gcctcgccca   20
  • <210> 1272 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1272 ccagacctcc gcgcctcgcc   20
  • <210> 1273 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1273 ggccagacct ccgcgcctcg   20
  • <210> 1274 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1274 tataggccag acctccgcgc   20
  • <210> 1275 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1275 tttataggcc agacctccgc   20
  • <210> 1276 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1276 gactacttta taggccagac   20
  • <210> 1277 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1277 gcgactactt tataggccag   20
  • <210> 1278 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1278 ctccgcgact actttatagg   20
  • <210> 1279 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1279 gtctccgcga ctactttata   20
  • <210> 1280 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1280 ccgtctccgc gactacttta   20
  • <210> 1281 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1281 ccccgtctcc gcgactactt   20
  • <210> 1282 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1282 caccccgtct ccgcgactac   20
  • <210> 1283 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1283 agcaccccgt ctccgcgact   20
  • <210> 1284 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1284 ccagcacccc gtctccgcga   20
  • <210> 1285 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1285 aaccagcacc ccgtctccgc   20
  • <210> 1286 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1286 caaaccagca ccccgtctcc   20
  • <210> 1287 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1287 cgcaaaccag caccccgtct   20
  • <210> 1288 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1288 acgacgcaaa ccagcacccc   20
  • <210> 1289 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1289 ctacgacgca aaccagcacc   20
  • <210> 1290 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1290 gactacgacg caaaccagca   20
  • <210> 1291 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1291 gagactacga cgcaaaccag   20
  • <210> 1292 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1292 aggagactac gacgcaaacc   20
  • <210> 1293 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1293 gcaggagact acgacgcaaa   20
  • <210> 1294 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1294 ctgcaggaga ctacgacgca   20
  • <210> 1295 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1295 cgctgcagga gactacgacg   20
  • <210> 1296 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1296 tgcaacggaa accccagacg   20
  • <210> 1297 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1297 actgcaacgg aaaccccaga   20
  • <210> 1298 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1298 gaggactgca acggaaaccc   20
  • <210> 1299 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1299 ccgaggactg caacggaaac   20
  • <210> 1300 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1300 ttccgaggac tgcaacggaa   20
  • <210> 1301 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1301 ctggttccga ggactgcaac   20
  • <210> 1302 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1302 ggtcctggtt ccgaggactg   20
  • <210> 1303 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1303 ccgaggtcct ggttccgagg   20
  • <210> 1304 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1304 cgccgaggtc ctggttccga   20
  • <210> 1305 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1305 cacgccgagg tcctggttcc   20
  • <210> 1306 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1306 gccacgccga ggtcctggtt   20
  • <210> 1307 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1307 ctaggccacg ccgaggtcct   20
  • <210> 1308 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1308 cgctaggcca cgccgaggtc   20
  • <210> 1309 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1309 ctcgctaggc cacgccgagg   20
  • <210> 1310 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1310 aactcgctag gccacgccga   20
  • <210> 1311 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1311 ataactcgct aggccacgcc   20
  • <210> 1312 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1312 ccataactcg ctaggccacg   20
  • <210> 1313 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1313 cgccataact cgctaggcca   20
  • <210> 1314 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1314 tgggccgtcg cccttcagca   20
  • <210> 1315 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1315 actgggccgt cgcccttcag   20
  • <210> 1316 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1316 gcactgggcc gtcgcccttc   20
  • <210> 1317 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1317 ctgcactggg ccgtcgccct   20
  • <210> 1318 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1318 tgccctgcac tgggccgtcg   20
  • <210> 1319 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1319 gatgccctgc actgggccgt   20
  • <210> 1320 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1320 atgatgccct gcactgggcc   20
  • <210> 1321 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1321 attgatgatg ccctgcactg   20
  • <210> 1322 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1322 aaattgatga tgccctgcac   20
  • <210> 1323 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1323 cgaaattgat gatgccctgc   20
  • <210> 1324 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1324 ctcgaaattg atgatgccct   20
  • <210> 1325 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1325 tgctcgaaat tgatgatgcc   20
  • <210> 1326 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1326 tctgctcgaa attgatgatg   20
  • <210> 1327 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1327 cttctgctcg aaattgatga   20
  • <210> 1328 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1328 tttaatgctt ccccacacct   20
  • <210> 1329 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1329 cctttaatgc ttccccacac   20
  • <210> 1330 <211> 20 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1330 gtcctttaat gcttccccac   20
  • <210> 1331 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1331 cccttcagca cgcacac   17
  • <210> 1332 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1332 gcccttcagc acgcaca   17
  • <210> 1333 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1333 cgcccttcag cacgcac   17
  • <210> 1334 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1334 caccacaagc caaacga   17
  • <210> 1335 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1335 acaccacaag ccaaacg   17
  • <210> 1336 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1336 tacaccacaa gccaaac   17
  • <210> 1337 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1337 ttacaccaca agccaaa   17
  • <210> 1338 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1338 attacaccac aagccaa   17
  • <210> 1339 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1339 aacagatgag ttaaggg   17
  • <210> 1340 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1340 taacagatga gttaagg   17
  • <210> 1341 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1341 ataacagatg agttaag   17
  • <210> 1342 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1342 ggatacattt ctacagc   17
  • <210> 1343 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1343 aggatacatt tctacag   17
  • <210> 1344 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1344 caggatacat ttctaca   17
  • <210> 1345 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1345 ttatcaggat acatttc   17
  • <210> 1346 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1346 gtttatcagg atacatt   17
  • <210> 1347 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1347 tgtttatcag gatacat   17
  • <210> 1348 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1348 atgtttatca ggataca   17
  • <210> 1349 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1349 aatgtttatc aggatac   17
  • <210> 1350 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1350 taatgtttat caggata   17
  • <210> 1351 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1351 ttaatgttta tcaggat   17
  • <210> 1352 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1352 gtttaatgtt tatcagg   17
  • <210> 1353 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1353 cttttaagat tacagtg   17
  • <210> 1354 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1354 cacttttaag attacag   17
  • <210> 1355 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1355 tcacacaatt acacttt   17
  • <210> 1356 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1356 gtcacacaat tacactt   17
  • <210> 1357 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1357 aagtcacaca attacac   17
  • <210> 1358 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1358 aggtacttta aagcaac   17
  • <210> 1359 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1359 acaggtactt taaagca   17
  • <210> 1360 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1360 tacaggtact ttaaagc   17
  • <210> 1361 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1361 ctacaggtac tttaaag   17
  • <210> 1362 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1362 cactacaggt actttaa   17
  • <210> 1363 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1363 tcactacagg tacttta   17
  • <210> 1364 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1364 ctcactacag gtacttt   17
  • <210> 1365 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1365 tctcactaca ggtactt   17
  • <210> 1366 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1366 ttctcactac aggtact   17
  • <210> 1367 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1367 tttctcacta caggtac   17
  • <210> 1368 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1368 gtttctcact acaggta   17
  • <210> 1369 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1369 agtttctcac tacaggt   17
  • <210> 1370 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1370 cagtttctca ctacagg   17
  • <210> 1371 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1371 tcagtttctc actacag   17
  • <210> 1372 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1372 atcagtttct cactaca   17
  • <210> 1373 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1373 aatcagtttc tcactac   17
  • <210> 1374 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1374 gatcataaat cagtttc   17
  • <210> 1375 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1375 tgatcataaa tcagttt   17
  • <210> 1376 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1376 gtgatcataa atcagtt   17
  • <210> 1377 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1377 agtgatcata aatcagt   17
  • <210> 1378 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1378 caagtgatca taaatca   17
  • <210> 1379 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1379 ccaagtgatc ataaatc   17
  • <210> 1380 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1380 tccaagtgat cataaat   17
  • <210> 1381 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1381 cttccaagtg atcataa   17
  • <210> 1382 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1382 tcttccaagt gatcata   17
  • <210> 1383 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1383 agacatttta actgagt   17
  • <210> 1384 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1384 gatttaagtc tggcaaa   17
  • <210> 1385 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1385 tgatttaagt ctggcaa   17
  • <210> 1386 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1386 gtgatttaag tctggca   17
  • <210> 1387 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1387 tgtgatttaa gtctggc   17
  • <210> 1388 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1388 ctgtgattta agtctgg   17
  • <210> 1389 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1389 tctgtgattt aagtctg   17
  • <210> 1390 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1390 atctgtgatt taagtct   17
  • <210> 1391 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1391 catctgtgat ttaagtc   17
  • <210> 1392 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1392 ccatctgtga tttaagt   17
  • <210> 1393 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1393 cccatctgtg atttaag   17
  • <210> 1394 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1394 acccatctgt gatttaa   17
  • <210> 1395 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1395 tacccatctg tgattta   17
  • <210> 1396 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1396 gcttgaatga caaagaa   17
  • <210> 1397 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1397 ggcttgaatg acaaaga   17
  • <210> 1398 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1398 cacaggcttg aatgaca   17
  • <210> 1399 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1399 tcacaggctt gaatgac   17
  • <210> 1400 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1400 aagtgccata cagggtt   17
  • <210> 1401 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1401 taagtgccat acagggt   17
  • <210> 1402 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1402 ataagtgcca tacaggg   17
  • <210> 1403 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1403 aataagtgcc atacagg   17
  • <210> 1404 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1404 taataagtgc catacag   17
  • <210> 1405 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1405 ataataagtg ccataca   17
  • <210> 1406 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1406 cataataagt gccatac   17
  • <210> 1407 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1407 tcataataag tgccata   17
  • <210> 1408 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1408 ctcataataa gtgccat   17
  • <210> 1409 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1409 cctcataata agtgcca   17
  • <210> 1410 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1410 gcctcataat aagtgcc   17
  • <210> 1411 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1411 agcctcataa taagtgc   17
  • <210> 1412 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1412 tagcctcata ataagtg   17
  • <210> 1413 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1413 atagcctcat aataagt   17
  • <210> 1414 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1414 aatagcctca taataag   17
  • <210> 1415 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1415 cttttaatag cctcata   17
  • <210> 1416 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1416 tcttttaata gcctcat   17
  • <210> 1417 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1417 ggattctttt aatagcc   17
  • <210> 1418 <211> 17 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1418 ttagtttgaa tttggat   17
  • <210> 1419 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1419 gtcgcccttc agcacgca   18
  • <210> 1420 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1420 cccacacctt cactgg   16
  • <210> 1421 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1421 ttccccacac cttcactg   18
  • <210> 1422 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1422 ccccacacct tcactg   16
  • <210> 1423 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1423 cttccccaca ccttcact   18
  • <210> 1424 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1424 tccccacacc ttcact   16
  • <210> 1425 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1425 gcttccccac accttcac   18
  • <210> 1426 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1426 ttccccacac cttcac   16
  • <210> 1427 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1427 cttccccaca ccttca   16
  • <210> 1428 <211> 19 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1428 aggatacatt tctacagct   19
  • <210> 1429 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1429 atacatttct acagctag   18
  • <210> 1430 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1430 gatacatttc tacagcta   18
  • <210> 1431 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1431 tacatttcta cagcta   16
  • <210> 1432 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1432 ggatacattt ctacagct   18
  • <210> 1433 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1433 atacatttct acagct   16
  • <210> 1434 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1434 aggatacatt tctacagc   18
  • <210> 1435 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1435 gatacatttc tacagc   16
  • <210> 1436 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1436 caggatacat ttctacag   18
  • <210> 1437 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1437 atgtttatca ggatac   16
  • <210> 1438 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1438 ttaatgttta tcaggata   18
  • <210> 1439 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1439 tttaatgttt atcaggat   18
  • <210> 1440 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1440 gtttaatgtt tatcagga   18
  • <210> 1441 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1441 ttaatgttta tcagga   16
  • <210> 1442 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1442 tgtttaatgt ttatcagg   18
  • <210> 1443 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1443 tttaatgttt atcagg   16
  • <210> 1444 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1444 gtgtttaatg tttatcag   18
  • <210> 1445 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1445 gtttaatgtt tatcag   16
  • <210> 1446 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1446 agtgtttaat gtttatca   18
  • <210> 1447 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1447 tgtttaatgt ttatca   16
  • <210> 1448 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1448 cagtgtttaa tgtttatc   18
  • <210> 1449 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1449 gtgtttaatg tttatc   16
  • <210> 1450 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1450 acagtgttta atgtttat   18
  • <210> 1451 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1451 tacagtgttt aatgttta   18
  • <210> 1452 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1452 cagtgtttaa tgttta   16
  • <210> 1453 <211> 18 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1453 ttacagtgtt taatgttt   18
  • <210> 1454 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1454 acagtgttta atgttt   16
  • <210> 1455 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1455 ggatacattt ctacag   16
  • <210> 1456 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1456 taatgtttat caggat   16
  • <210> 1457 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1457 agtgtttaat gtttat   16
  • <210> 1458 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1458 catttctaca gctagc   16
  • <210> 1459 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1459 acatttctac agctag   16
  • <210> 1460 <211> 16 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1460 aatgtttatc aggata   16
  • <210> 1461 <211> 19 <212> DNA <213> Artificial sequence
  • <220> <223> Synthetic oligonucleotide
  • <400> 1461 caggatacat ttctacagc   19

Claims (10)

  1. An antisense compound according to the following formula: mCes Aeo Ges Geo Aes Tds Ads mCds Ads Tds Tds Tds mCds Tds Ads mCeo Aes Geo mCes Te (nucleobase sequence of SEQ ID NO: 725) wherein,
    A = an adenine,
    mC = a 5-methylcytosine,
    G = a guanine,
    T = a thymine,
    e = a 2'-O-methoxyethylribose modified sugar,
    d = a 2'-deoxyribose sugar,
    s = a phosphorothioate internucleoside linkage, and
    o = a phosphodiester internucleoside linkage;
    or a pharmaceutically acceptable salt thereof.
  2. The antisense compound of claim 1.
  3. The pharmaceutically acceptable salt of the antisense compound of claim 1.
  4. A pharmaceutical composition comprising the antisense compound or the pharmaceutically acceptable salt thereof of claim 1, the antisense compound of claim 2 or the pharmaceutically acceptable salt of claim 3, and at least one of a pharmaceutically acceptable carrier or diluent.
  5. The pharmaceutical composition of claim 4, wherein the pharmaceutically acceptable diluent is phosphate-buffered saline.
  6. The antisense compound or the pharmaceutically acceptable salt thereof of claim 1, the antisense compound of claim 2, the pharmaceutically acceptable salt of claim 3, or the pharmaceutical composition of claim 4 or 5, for use in therapy in a human subject.
  7. The antisense compound or the pharmaceutically acceptable salt thereof of claim 1, the antisense compound of claim 2, the pharmaceutically acceptable salt of claim 3, or the pharmaceutical composition of claim 4 or 5, for use in treating a SOD-1 associated disease.
  8. The antisense compound or the pharmaceutically acceptable salt thereof of claim 1, the antisense compound of claim 2, the pharmaceutically acceptable salt of claim 3, or the pharmaceutical composition of claim 4 or 5, for use in preventing a SOD-1 associated disease.
  9. The antisense compound, the pharmaceutically acceptable salt, or the pharmaceutical composition for the use of claim 7 or 8, wherein the SOD-1 associated disease is a neurodegenerative disorder.
  10. The antisense compound, the pharmaceutically acceptable salt, or the pharmaceutical composition for the use of claim 7 or 8, wherein the SOD-1 associated disease is amyotrophic lateral sclerosis.
HK17106942.7A 2014-04-01 2015-04-01 Compositions for modulating sod-1 expression HK1233301B (en)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
US61/973,803 2014-04-01

Publications (2)

Publication Number Publication Date
HK1233301A1 HK1233301A1 (en) 2018-01-26
HK1233301B true HK1233301B (en) 2021-03-05

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