HK1233301B - Compositions for modulating sod-1 expression - Google Patents
Compositions for modulating sod-1 expression Download PDFInfo
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- HK1233301B HK1233301B HK17106942.7A HK17106942A HK1233301B HK 1233301 B HK1233301 B HK 1233301B HK 17106942 A HK17106942 A HK 17106942A HK 1233301 B HK1233301 B HK 1233301B
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Description
Disclosed are compositions and methods for reducing expression of superoxide dismutase 1, soluble (SOD-1) mRNA and protein in an animal. Such methods are useful to treat, prevent, or ameliorate neurodegenerative diseases, including amyotrophic lateral sclerosis (ALS) by inhibiting expression of SOD-1 in an animal.
The soluble SOD-1 enzyme (also known as Cu/Zn superoxide dismutase) is one of the superoxide dismutases that provide defense against oxidative damage of biomolecules by catalyzing the dismutation of superoxide to hydrogen peroxide (H2O2) (Fridovich, Annu. Rev. Biochem., 1995, 64, 97-112). The superoxide anion (O2-) is a potentially harmful cellular by-product produced primarily by errors of oxidative phosphorylation in mitochondria (Turrens, J. Physiol. 2003, 552, 335-344)
Mutations in the SOD-1 gene are associated with a dominantly-inherited form of amyotrophic lateral sclerosis (ALS, also known as Lou Gehrig's disease) a disorder characterized by a selective degeneration of upper and lower motor neurons (Rowland, N. Engl. J. Med. 2001, 344, 1688-1700). There is a tight genetic linkage between familial ALS and missense mutations in the SOD1 gene (Rosen, Nature, 1993, 362, 59-62). The toxicity of mutant SOD1 is believed to arise from an initial misfolding (gain of function) reducing nuclear protection from the active enzyme (loss of function in the nuclei), a process that may be involved in ALS pathogenesis (Sau, Hum. Mol. Genet. 2007, 16, 1604-1618).
ALS is a devastating progressive neurodegenerative disease affecting as many as 30,000 Americans at any given time. The progressive degeneration of the motor neurons in ALS eventually leads to their death. When the motor neurons die, the ability of the brain to initiate and control muscle movement is lost. With voluntary muscle action progressively affected, patients in the later stages of the disease may become totally paralyzed.
Currently lacking are acceptable options for treating such neurodegenerative diseases. It is therefore an object herein to provide compounds and compositions for use in treating such diseases.
The present invention provides an antisense compound according to the following formula: mCes Aeo Ges Geo Aes Tds Ads mCds Ads Tds Tds Tds mCds Tds Ads mCeo Aes Geo mCes Te (nucleobase sequence of SEQ ID NO: 725)
wherein,
- A =
- an adenine,
- mC =
- a 5-methylcytosine,
- G =
- a guanine,
- T =
- a thymine,
- e =
- a 2'-O-methoxyethylribose modified sugar,
- d =
- a 2'-deoxyribose sugar,
- s =
- a phosphorothioate internucleoside linkage, and
- o =
- a phosphodiester internucleoside linkage;
The invention also provides a pharmaceutical composition comprising the antisense compound or the pharmaceutically acceptable salt thereof of the invention and at least one of a pharmaceutically acceptable carrier or diluent.
The invention further provides the antisense compound or the pharmaceutically acceptable salt thereof or the pharmaceutical composition of the invention, for use in therapy in a human subject.
The invention also provides the antisense compound or the pharmaceutically acceptable salt thereof or the pharmaceutical composition of the invention, for use in treating or preventing a SOD-1 associated disease.
Described herein are methods, compounds, and compositions for modulating expression of superoxide dismutase 1, soluble (SOD-1) mRNA and protein. In certain instances, compounds useful for modulating expression of SOD-1 mRNA and protein are antisense compounds. In certain instances, the antisense compounds are modified oligonucleotides.
In certain instances, modulation can occur in a cell or tissue. In certain instances, the cell or tissue is in an animal. In certain instances, the animal is a human. In certain instances, SOD-1 mRNA levels are reduced. In certain instances, SOD-1 protein levels are reduced. Such reduction can occur in a time-dependent manner or in a dose-dependent manner.
Also described are methods, compounds, and compositions useful for preventing, treating, and ameliorating diseases, disorders, and conditions. In certain instances, such SOD-1 related diseases, disorders, and conditions are neurodegenerative diseases. In certain instances, such neurodegenerative diseases, disorders, and conditions include amyotrophic lateral sclerosis (ALS).
Such diseases, disorders, and conditions can have one or more risk factors, causes, or outcomes in common. Certain risk factors and causes for development of ALS include growing older, having a personal or family history, or genetic predisposition. However, the majority of ALS cases are sporadic and no known risk factors are known. Certain symptoms and outcomes associated with development of ALS include but are not limited to: fasciculations, cramps, tight and stiff muscles (spasticity), muscle weakness affecting an arm or a leg, slurred and nasal speech, difficulty walking, difficulty chewing or swallowing (dysphagia), difficulty speaking or forming words (dysarthria), weakness or atrophy, spasticity, exaggerated reflexes (hyperreflexia), and presence of Babinski's sign. As ALS progresses, symptoms and outcomes by include weakening of other limbs, perhaps accompanied by twitching, muscle cramping, and exaggerated, faster reflexes; problems with chewing, swallowing, and breathing; drooling may occur; eventual paralysis; and death.
In certain instances, methods of treatment include administering an SOD-1 antisense compound to an individual in need thereof. In certain instances, methods of treatment include administering an SOD-1 modified oligonucleotide to an individual in need thereof.
It is to be understood that both the foregoing general description and the following detailed description are exemplary and explanatory only and are not restrictive of the invention, as claimed. Herein, the use of the singular includes the plural unless specifically stated otherwise. As used herein, the use of "or" means "and/or" unless stated otherwise. Additionally, as used herein, the use of "and" means "and/or" unless stated otherwise. Furthermore, the use of the term "including" as well as other forms, such as "includes" and "included", is not limiting. Also, terms such as "element" or "component" encompass both elements and components comprising one unit and elements and components that comprise more than one subunit, unless specifically stated otherwise. Also, all sequences described herein are listed 5' to 3', unless otherwise stated.
The section headings used herein are for organizational purposes only and are not to be construed as limiting the subject matter described.
Unless specific definitions are provided, the nomenclature utilized in connection with, and the procedures and techniques of, analytical chemistry, synthetic organic chemistry, and medicinal and pharmaceutical chemistry described herein are those well known and commonly used in the art. Standard techniques may be used for chemical synthesis, and chemical analysis.
Unless otherwise indicated, the following terms have the following meanings:
- "2'-deoxynucleoside" (also 2'-deoxyribonucleoside) means a nucleoside comprising 2'-H furanosyl sugar moiety, as found in naturally occurring deoxyribonucleosides (DNA). In certain instances, a 2'-deoxynucleoside may comprise a modified nucleobase or may comprise an RNA nucleobase (e.g., uracil).
- "2'-deoxyribose sugar" means a 2'-H furanosyl sugar moiety, as found in naturally occurring deoxyribonucleic acids (DNA).
- "2'-O-methoxyethyl" (also 2'-MOE and 2'-OCH2CH2-OCH3 and MOE and 2'-O-methoxyethylribose) refers to an O-methoxy-ethyl modification of the 2' position of a furanose ring. A 2'-O-methoxyethylribose modified sugar is a modified sugar.
- "2'-O-methoxyethylribose modified nucleoside" (also2'-MOE nucleoside) means a nucleoside comprising a 2'-MOE modified sugar moiety.
- "2'-substituted nucleoside" means a nucleoside comprising a substituent at the 2'-position of the furanose ring other than H or OH. In certain instances, 2' substituted nucleosides include nucleosides with bicyclic sugar modifications.
- "5-methylcytosine" means a cytosine modified with a methyl group attached to the 5 position. A 5-methylcytosine is a modified nucleobase.
"About" means within ±10% of a value. For example, if it is stated, "the compounds affected at least about 50% inhibition of SOD-1", it is implied that the SOD-1 levels are inhibited within a range of 45% and 55%. "Administered concomitantly" refers to the co-administration of two pharmaceutical agents in any manner in which the pharmacological effects of both are manifest in the patient at the same time. Concomitant administration does not require that both pharmaceutical agents be administered in a single pharmaceutical composition, in the same dosage form, or by the same route of administration. The effects of both pharmaceutical agents need not manifest themselves at the same time. The effects need only be overlapping for a period of time and need not be coextensive.
"Administering" means providing a pharmaceutical agent to an animal, and includes, but is not limited to administering by a medical professional and self-administering.
"Amelioration" refers to a lessening, slowing, stopping, or reversing of at least one indicator of the severity of a condition or disease. The severity of indicators may be determined by subjective or objective measures, which are known to those skilled in the art.
"Animal" refers to a human or non-human animal, including, but not limited to, mice, rats, rabbits, dogs, cats, pigs, and non-human primates, including, but not limited to, monkeys and chimpanzees.
"Antibody" refers to a molecule characterized by reacting specifically with an antigen in some way, where the antibody and the antigen are each defined in terms of the other. Antibody may refer to a complete antibody molecule or any fragment or region thereof, such as the heavy chain, the light chain, Fab region, and Fc region.
"Antisense activity" means any detectable or measurable activity attributable to the hybridization of an antisense compound to its target nucleic acid. In certain instances, antisense activity is a decrease in the amount or expression of a target nucleic acid or protein encoded by such target nucleic acid.
"Antisense compound" means an oligomeric compound that is capable of undergoing hybridization to a target nucleic acid through hydrogen bonding. Examples of antisense compounds include single-stranded and double-stranded compounds, such as, antisense oligonucleotides, siRNAs, shRNAs, ssRNAs, and occupancy-based compounds.
"Antisense inhibition" means reduction of target nucleic acid levels in the presence of an antisense compound complementary to a target nucleic acid compared to target nucleic acid levels or in the absence of the antisense compound.
"Antisense mechanisms" are all those mechanisms involving hybridization of a compound with a target nucleic acid, wherein the outcome or effect of the hybridization is either target degradation or target occupancy with concomitant stalling of the cellular machinery involving, for example, transcription or splicing.
"Antisense oligonucleotide" means a single-stranded oligonucleotide having a nucleobase sequence that permits hybridization to a corresponding segment of a target nucleic acid.
"Base complementarity" refers to the capacity for the precise base pairing of nucleobases of an oligonucleotide with corresponding nucleobases in a target nucleic acid (i.e., hybridization), and is mediated by Watson-Crick, Hoogsteen or reversed Hoogsteen hydrogen binding between corresponding nucleobases.
"Bicyclic sugar" means a furanose ring modified by the bridging of two atoms. A bicyclic sugar is a modified sugar.
"Bicyclic nucleic acid" or "BNA" refers to a nucleoside or nucleotide wherein the furanose portion of the nucleoside or nucleotide includes a bridge connecting two carbon atoms on the furanose ring, thereby forming a bicyclic ring system.
"Cap structure" or "terminal cap moiety" means chemical modifications, which have been incorporated at either terminus of an antisense compound.
"cEt" or "constrained ethyl" or "cEt modified sugar" means a bicyclic nucleoside having a sugar moiety comprising a bridge connecting the 4'-carbon and the 2'-carbon, wherein the bridge has the formula: 4'-CH(CH3)-O-2'. A cEt modified sugar is a modified sugar.
"cEt modified nucleoside" means a bicyclic nucleoside having a sugar moiety comprising a bridge connecting the 4'-carbon and the 2'-carbon, wherein the bridge has the formula: 4'-CH(CH3)-O-2'. A cEt modified sugar is a modified sugar.
"Chemically distinct region" refers to a region of an antisense compound that is in some way chemically different than another region of the same antisense compound. For example, a region having 2'-O-methoxyethyl nucleosides is chemically distinct from a region having nucleosides without 2'-O-methoxyethyl modifications.
"Chimeric antisense compound" means an antisense compound that has at least two chemically distinct regions, each position having a plurality of subunits.
"Co-administration" means administration of two or more pharmaceutical agents to an individual. The two or more pharmaceutical agents may be in a single pharmaceutical composition, or may be in separate pharmaceutical compositions. Each of the two or more pharmaceutical agents may be administered through the same or different routes of administration. Co-administration encompasses parallel or sequential administration.
"Complementarity" means the capacity for pairing between nucleobases of a first nucleic acid and a second nucleic acid.
"Comprise," "comprises," and "comprising" will be understood to imply the inclusion of a stated step or element or group of steps or elements but not the exclusion of any other step or element or group of steps or elements.
"Contiguous nucleobases" means nucleobases immediately adjacent to each other. "Designing" or "designed to" refer to the process of designing an oligomeric compound that specifically hybridizes with a selected nucleic acid molecule.
"Diluent" means an ingredient in a composition that lacks pharmacological activity, but is pharmaceutically necessary or desirable. For example, in drugs that are injected, the diluent may be a liquid, e.g. saline solution.
"Dose" means a specified quantity of a pharmaceutical agent provided in a single administration, or in a specified time period. In certain instances, a dose may be administered in one, two, or more boluses, tablets, or injections. For example, in certain instances where subcutaneous administration is desired, the desired dose requires a volume not easily accommodated by a single injection, therefore, two or more injections may be used to achieve the desired dose. In certain instances, the pharmaceutical agent is administered by infusion over an extended period of time or continuously. Doses may be stated as the amount of pharmaceutical agent per hour, day, week, or month.
"Effective amount" in the context of modulating an activity or of treating or preventing a condition means the administration of that amount of pharmaceutical agent to a subject in need of such modulation, treatment, or prophylaxis, either in a single dose or as part of a series, that is effective for modulation of that effect, or for treatment or prophylaxis or improvement of that condition. The effective amount may vary among individuals depending on the health and physical condition of the individual to be treated, the taxonomic group of the individuals to be treated, the formulation of the composition, assessment of the individual's medical condition, and other relevant factors.
"Efficacy" means the ability to produce a desired effect.
"Expression" includes all the functions by which a gene's coded information is converted into structures present and operating in a cell. Such structures include, but are not limited to the products of transcription and translation.
"Fully complementary" or "100% complementary" means each nucleobase of a first nucleic acid has a complementary nucleobase in a second nucleic acid. In certain instances, a first nucleic acid is an antisense compound and a target nucleic acid is a second nucleic acid.
"Gapmer" means a chimeric antisense compound in which an internal region having a plurality of nucleosides that support RNase H cleavage is positioned between external regions having one or more nucleosides, wherein the nucleosides comprising the internal region are chemically distinct from the nucleoside or nucleosides comprising the external regions. The internal region may be referred to as a "gap" and the external regions may be referred to as the "wings."
"Gap-narrowed" means a chimeric antisense compound having a gap segment of 9 or fewer contiguous 2'-deoxyribonucleosides positioned between and immediately adjacent to 5' and 3' wing segments having from 1 to 6 nucleosides.
"Gap-widened" means a chimeric antisense compound having a gap segment of 12 or more contiguous 2'-deoxyribonucleosides positioned between and immediately adjacent to 5' and 3' wing segments having from 1 to 6 nucleosides.
"Hybridization" means the annealing of complementary nucleic acid molecules. In certain instances, complementary nucleic acid molecules include, but are not limited to, an antisense compound and a target nucleic acid. In certain instances, complementary nucleic acid molecules include, but are not limited to, an oligonucleotide and a nucleic acid target.
"Identifying an animal having a SOD-1 associated disease" means identifying an animal having been diagnosed with a SOD-1 associated disease or predisposed to develop a SOD-1 associated disease. Individuals predisposed to develop a SOD-1 associated disease include those having one or more risk factors for developing a SOD-1 associated disease, including, growing older, having a personal or family history, or genetic predisposition of one or more SOD-1 associated diseases. Such identification may be accomplished by any method including evaluating an individual's medical history and standard clinical tests or assessments, such as genetic testing.
"Immediately adjacent" means there are no intervening elements between the immediately adjacent elements.
"Individual" means a human or non-human animal selected for treatment or therapy.
"Inhibiting SOD-1" means reducing the level or expression of a SOD-1 mRNA and/or protein. In certain instances, SOD-1 mRNA and/or protein levels are inhibited in the presence of an antisense compound targeting SOD-1, including a modified oligonucleotide targeting SOD-1, as compared to expression of SOD-1 mRNA and/or protein levels in the absence of a SOD-1 antisense compound, such as a modified oligonucleotide.
"Inhibiting the expression or activity" refers to a reduction or blockade of the expression or activity and does not necessarily indicate a total elimination of expression or activity.
"Internucleoside linkage" refers to the chemical bond between nucleosides. "Linked nucleosides" means adjacent nucleosides linked together by an internucleoside linkage.
"Mismatch" or "non-complementary nucleobase" refers to the case when a nucleobase of a first nucleic acid is not capable of pairing with the corresponding nucleobase of a second or target nucleic acid.
"Mixed backbone" means a pattern of internucleoside linkages including at least two different internucleoside linkages. For example, an oligonucleotide with a mixed backbone may include at least one phosphodiester linkage and at least one phosphorothioate linkage.
"Modified internucleoside linkage" refers to a substitution or any change from a naturally occurring internucleoside bond (i.e., a phosphodiester internucleoside bond).
"Modified nucleobase" means any nucleobase other than adenine, cytosine, guanine, thymidine, or uracil. An "unmodified nucleobase" means the purine bases adenine (A) and guanine (G), and the pyrimidine bases thymine (T), cytosine (C), and uracil (U).
A "modified nucleoside" means a nucleoside having, independently, a modified sugar moiety and/or modified nucleobase.
"Modified nucleotide" means a nucleotide having, independently, a modified sugar moiety, modified internucleoside linkage, and/or modified nucleobase.
"Modified oligonucleotide" means an oligonucleotide comprising at least one modified internucleoside linkage, modified sugar, and/or modified nucleobase.
"Modified sugar" means substitution and/or any change from a natural sugar moiety.
"Monomer" means a single unit of an oligomer. Monomers include, but are not limited to, nucleosides and nucleotides, whether naturally occurring or modified.
"Motif" means the pattern of unmodified and modified nucleosides in an antisense compound.
"Natural sugar moiety" means a sugar moiety found in DNA (2'-H) or RNA (2'-OH).
"Naturally occurring internucleoside linkage" means a 3' to 5' phosphodiester linkage.
"Non-complementary nucleobase" refers to a pair of nucleobases that do not form hydrogen bonds with one another or otherwise support hybridization.
"Nucleic acid" refers to molecules composed of monomeric nucleotides. A nucleic acid includes, but is not limited to, ribonucleic acids (RNA), deoxyribonucleic acids (DNA), single-stranded nucleic acids, double-stranded nucleic acids, small interfering ribonucleic acids (siRNA), and microRNAs (miRNA).
"Nucleobase" means a heterocyclic moiety capable of pairing with a base of another nucleic acid.
"Nucleobase complementarity" refers to a nucleobase that is capable of base pairing with another nucleobase. For example, in DNA, adenine (A) is complementary to thymine (T). For example, in RNA, adenine (A) is complementary to uracil (U). In certain instances, complementary nucleobase refers to a nucleobase of an antisense compound that is capable of base pairing with a nucleobase of its target nucleic acid. For example, if a nucleobase at a certain position of an antisense compound is capable of hydrogen bonding with a nucleobase at a certain position of a target nucleic acid, then the position of hydrogen bonding between the oligonucleotide and the target nucleic acid is considered to be complementary at that nucleobase pair.
"Nucleobase sequence" means the order of contiguous nucleobases independent of any sugar, linkage, and/or nucleobase modification.
"Nucleoside" means a nucleobase linked to a sugar.
"Nucleoside mimetic" includes those structures used to replace the sugar or the sugar and the base and not necessarily the linkage at one or more positions of an oligomeric compound such as for example nucleoside mimetics having morpholino, cyclohexenyl, cyclohexyl, tetrahydropyranyl, bicyclo, or tricyclo sugar mimetics, e.g., non furanose sugar units. Nucleotide mimetic includes those structures used to replace the nucleoside and the linkage at one or more positions of an oligomeric compound such as for example peptide nucleic acids or morpholinos (morpholinos linked by -N(H)-C(=O)-O- or other non-phosphodiester linkage). Sugar surrogate overlaps with the slightly broader term nucleoside mimetic but is intended to indicate replacement of the sugar unit (furanose ring) only. The tetrahydropyranyl rings provided herein are illustrative of an example of a sugar surrogate wherein the furanose sugar group has been replaced with a tetrahydropyranyl ring system. "Mimetic" refers to groups that are substituted for a sugar, a nucleobase, and/or internucleoside linkage. Generally, a mimetic is used in place of the sugar or sugar-internucleoside linkage combination, and the nucleobase is maintained for hybridization to a selected target.
"Nucleotide" means a nucleoside having a phosphate group covalently linked to the sugar portion of the nucleoside.
"Off-target effect" refers to an unwanted or deleterious biological effect associated with modulation of RNA or protein expression of a gene other than the intended target nucleic acid.
"Oligomeric compound" or "oligomer" means a polymer of linked monomeric subunits which is capable of hybridizing to at least a region of a nucleic acid molecule.
"Oligonucleotide" means a polymer of linked nucleosides each of which can be modified or unmodified, independent one from another.
"Parenteral administration" means administration through injection (e.g., bolus injection) or infusion. Parenteral administration includes subcutaneous administration, intravenous administration, intramuscular administration, intraarterial administration, intraperitoneal administration, or intracranial administration, e.g., intrathecal or intracerebroventricular administration.
"Peptide" means a molecule formed by linking at least two amino acids by amide bonds. Without limitation, as used herein, peptide refers to polypeptides and proteins.
"Pharmaceutical agent" means a substance that provides a therapeutic benefit when administered to an individual. For example, in certain instances, a modified oligonucleotide targeted to SOD-1 is a pharmaceutical agent.
"Pharmaceutical composition" means a mixture of substances suitable for administering to a subject. For example, a pharmaceutical composition may comprise a modified oligonucleotide and a sterile aqueous solution.
"Pharmaceutically acceptable derivative" encompasses pharmaceutically acceptable salts, conjugates, prodrugs or isomers of the compounds described herein.
"Pharmaceutically acceptable salts" means physiologically and pharmaceutically acceptable salts of antisense compounds, i.e., salts that retain the desired biological activity of the parent oligonucleotide and do not impart undesired toxicological effects thereto.
"Phosphorothioate linkage" means a linkage between nucleosides where the phosphodiester bond is modified by replacing one of the non-bridging oxygen atoms with a sulfur atom. A phosphorothioate linkage is a modified internucleoside linkage.
"Portion" means a defined number of contiguous (i.e., linked) nucleobases of a nucleic acid. In certain instances, a portion is a defined number of contiguous nucleobases of a target nucleic acid. In certain instance, a portion is a defined number of contiguous nucleobases of an antisense compound.
"Prevent" or "preventing" refers to delaying or forestalling the onset or development of a disease, disorder, or condition for a period of time from minutes to days, weeks to months, or indefinitely.
"Prodrug" means a therapeutic agent that is prepared in an inactive form that is converted to an active form (i.e., drug) within the body or cells thereof by the action of endogenous enzymes or other chemicals and/or conditions.
"Prophylactically effective amount" refers to an amount of a pharmaceutical agent that provides a prophylactic or preventative benefit to an animal.
"Region" is defined as a portion of the target nucleic acid having at least one identifiable structure, function, or characteristic.
"Ribonucleotide" means a nucleotide having a hydroxy at the 2' position of the sugar portion of the nucleotide. Ribonucleotides may be modified with any of a variety of substituents.
"Salts" mean a physiologically and pharmaceutically acceptable salts of antisense compounds, i.e., salts that retain the desired biological activity of the parent oligonucleotide and do not impart undesired toxicological effects thereto.
"Segments" are defined as smaller or sub-portions of regions within a target nucleic acid.
"Shortened" or "truncated" versions of oligonucleotides SOD-1ght herein have one, two or more nucleosides deleted.
"Side effects" means physiological responses attributable to a treatment other than desired effects. In certain instances, side effects include, without limitation, injection site reactions, liver function test abnormalities, renal function abnormalities, liver toxicity, renal toxicity, central nervous system abnormalities, and myopathies.
"Single-stranded oligonucleotide" means an oligonucleotide which is not hybridized to a complementary strand.
"Sites," as used herein, are defined as unique nucleobase positions within a target nucleic acid. "Slows progression" means decrease in the development of the disease.
"SOD-1" means the mammalian gene superoxide dismutase 1, soluble (SOD-1), including the human gene superoxide dismutase 1, soluble (SOD-1).
"SOD-1 associated disease" means any disease associated with any SOD-1 nucleic acid or expression product thereof. Such diseases may include a neurodegenerative disease. Such neurodegenerative diseases may include amyotrophic lateral sclerosis (ALS).
"SOD-1 mRNA" means any messenger RNA expression product of a DNA sequence encoding SOD-1.
"SOD-1 nucleic acid" means any nucleic acid encoding SOD-1. For example, in certain instances, a SOD-1 nucleic acid includes a DNA sequence encoding SOD-1, an RNA sequence transcribed from DNA encoding SOD-1 (including genomic DNA comprising introns and exons), and a mRNA sequence encoding SOD-1. "SOD-1 mRNA" means a mRNA encoding a SOD-1 protein.
"SOD-1 protein" means the polypeptide expression product of a SOD-1 nucleic acid.
"Specifically hybridizable" refers to an antisense compound having a sufficient degree of complementarity between an oligonucleotide and a target nucleic acid to induce a desired effect, while exhibiting minimal or no effects on non-target nucleic acids under conditions in which specific binding is desired, i.e., under physiological conditions in the case of in vivo assays and therapeutic treatments.
"Stringent hybridization conditions" or "stringent conditions" refer to conditions under which an oligomeric compound will hybridize to its target sequence, but to a minimal number of other sequences.
"Subject" means a human or non-human animal selected for treatment or therapy.
"Sugar chemistry motif" means a pattern of sugar modifications including at least two different sugar modifications. For example, an oligonucleotide with a mixed backbone may include at least one 2'-O-methoxyethyl modified nucleoside, and/or one cEt modified nucleoside, and/or one 2'-deoxynucleoside.
"Target" refers to a protein, the modulation of which is desired.
"Target gene" refers to a gene encoding a target.
"Targeting" or "targeted" means the process of design and selection of an antisense compound that will specifically hybridize to a target nucleic acid and induce a desired effect.
"Target nucleic acid," "target RNA," and "target RNA transcript" and "nucleic acid target" all mean a nucleic acid capable of being targeted by antisense compounds.
"Target region" means a portion of a target nucleic acid to which one or more antisense compounds is targeted.
"Target segment" means the sequence of nucleotides of a target nucleic acid to which an antisense compound is targeted. "5' target site" refers to the 5'-most nucleotide of a target segment. "3' target site" refers to the 3'-most nucleotide of a target segment.
"Therapeutically effective amount" means an amount of a pharmaceutical agent that provides a therapeutic benefit to an individual.
"Treat" or "treating" or "treatment" refers administering a composition to effect an alteration or improvement of the disease or condition.
"Unmodified nucleobases" mean the purine bases adenine (A) and guanine (G), and the pyrimidine bases thymine (T), cytosine (C) and uracil (U).
"Unmodified nucleotide" means a nucleotide composed of naturally occuring nucleobases, sugar moieties, and internucleoside linkages. In certain instances, an unmodified nucleotide is an RNA nucleotide (i.e. β-D-ribonucleosides) or a DNA nucleotide (i.e. β-D-deoxyribonucleoside).
"Wing segment" means a plurality of nucleosides modified to impart to an oligonucleotide properties such as enhanced inhibitory activity, increased binding affinity for a target nucleic acid, or resistance to degradation by in vivo nucleases.
Certain instances herein are methods, compounds, and compositions for inhibiting SOD-1 mRNA and protein expression. Certain instances herein are methods, compounds, and composition for decreasing SOD-1 mRNA and protein levels.
Certain instances are antisense compounds targeted to a SOD-1 nucleic acid. In certain instances, the SOD-1 nucleic acid is the sequence set forth in GENBANK Accession No. NM_000454.4 (incorporated herein as SEQ ID NO: 1), GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000 (incorporated herein as SEQ ID NO: 2), and the complement of GENBANK Accession No. NW_001114168.1 truncated from nucleotides 2258000 to 2271000 (incorporated herein as SEQ ID NO: 3).
Certain instances are methods for the treatment, prevention, or amelioration of diseases, disorders, and conditions associated with SOD-1 in an individual in need thereof. Also contemplated are methods for the preparation of a medicament for the treatment, prevention, or amelioration of a disease, disorder, or condition associated with SOD-1. SOD-1 associated diseases, disorders, and conditions include neurodegenerative diseases. In certain instances, SOD-1 associated diseases include amyotrophic lateral sclerosis (ALS).
An exemplary instance is a compound consisting of a modified oligonucleotide according to the following formula:
An exemplary instance is therefore a compound consisting of a modified oligonucleotide according to the following formula: mCes Aeo Ges Geo Aes Tds Ads mCds Ads Tds Tds Tds mCds Tds Ads mCeo Aes Geo mCes Te; wherein,
- A =
- an adenine,
- mC =
- a 5-methylcytosine,
- G =
- a guanine,
- T =
- a thymine,
- e =
- a 2'-O-methoxyethylribose modified sugar,
- d =
- a 2'-deoxyribose sugar,
- s =
- a phosphorothioate internucleoside linkage, and
- o =
- a phosphodiester internucleoside linkage.
Another exemplary instance is a composition comprising the compound or salt thereof and at least one of a pharmaceutically acceptable carrier or diluent. Another exemplary instance is the use of the compound or composition for the manufacture of a medicament for treating a neurodegenerative disorder. An exemplary instance is therefore the use of the compound or composition for the manufacture of a medicament for treating ALS.
Oligomeric compounds include, but are not limited to, oligonucleotides, oligonucleosides, oligonucleotide analogs, oligonucleotide mimetics, antisense compounds, antisense oligonucleotides, modified oligonucleotides, and siRNAs. An oligomeric compound may be "antisense" to a target nucleic acid, meaning that is is capable of undergoing hybridization to a target nucleic acid through hydrogen bonding.
In certain instances, an antisense compound has a nucleobase sequence that, when written in the 5' to 3' direction, comprises the reverse complement of the target segment of a target nucleic acid to which it is targeted. In certain such instances, an oligonucleotide has a nucleobase sequence that, when written in the 5' to 3' direction, comprises the reverse complement of the target segment of a target nucleic acid to which it is targeted.
In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 12 to 30 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 12 to 25 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 12 to 22 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 14 to 20 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 15 to 25 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 18 to 22 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 19 to 21 subunits in length. In certain instances, the antisense compound is 8 to 80, 12 to 50, 13 to 30, 13 to 50, 14 to 30, 14 to 50, 15 to 30, 15 to 50, 16 to 30, 16 to 50, 17 to 30, 17 to 50, 18 to 30, 18 to 50, 19 to 30, 19 to 50, or 20 to 30 linked subunits in length.
In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 12 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 13 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 14 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 15 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 16 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 17 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 18 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 19 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 20 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 21 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 22 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 23 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 24 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 25 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 26 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 27 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 28 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 29 subunits in length. In certain instances, an antisense compound targeted to a SOD-1 nucleic acid is 30 subunits in length. In certain instances, the antisense compound targeted to a SOD-1 nucleic acid is 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, or 80 linked subunits in length, or a range defined by any two of the above values. In certain instances the antisense compound is a modified oligonucleotide, and the linked subunits are nucleosides.
In certain instances, oligonucleotides targeted to a SOD-1 nucleic acid may be shortened or truncated. For example, a single subunit may be deleted from the 5' end (5' truncation), or alternatively from the 3' end (3' truncation). A shortened or truncated antisense compound targeted to a SOD-1 nucleic acid may have two subunits deleted from the 5' end, or alternatively may have two subunits deleted from the 3' end, of the antisense compound. Alternatively, the deleted nucleosides may be dispersed throughout the antisense compound, for example, in an antisense compound having one nucleoside deleted from the 5' end and one nucleoside deleted from the 3' end.
When a single additional subunit is present in a lengthened antisense compound, the additional subunit may be located at the 5' or 3' end of the antisense compound. When two or more additional subunits are present, the added subunits may be adjacent to each other, for example, in an antisense compound having two subunits added to the 5' end (5' addition), or alternatively to the 3' end (3' addition), of the antisense compound. Alternatively, the added subunits may be dispersed throughout the antisense compound, for example, in an antisense compound having one subunit added to the 5' end and one subunit added to the 3' end.
It is possible to increase or decrease the length of an antisense compound, such as a modified oligonucleotide, and/or introduce mismatch bases without eliminating activity. For example, in Woolf et al. (Proc. Natl. Acad. Sci. USA 89:7305-7309, 1992), a series of oligonucleotides 13-25 nucleobases in length were tested for their ability to induce cleavage of a target RNA in an oocyte injection model. Oligonucleotides 25 nucleobases in length with 8 or 11 mismatch bases near the ends of the oligonucleotides were able to direct specific cleavage of the target mRNA, albeit to a lesser extent than oligonucleotides that contained no mismatches. Similarly, target specific cleavage was achieved using 13 nucleobase oligonucleotides, including those with 1 or 3 mismatches.
Gautschi et al (J. Natl. Cancer Inst. 93:463-471, March 2001) demonstrated the ability of an oligonucleotide having 100% complementarity to the bcl-2 mRNA and having 3 mismatches to the bcl-xL mRNA to reduce the expression of both bcl-2 and bcl-xL in vitro and in vivo. Furthermore, this oligonucleotide demonstrated potent anti-tumor activity in vivo.
Maher and Dolnick (Nuc. Acid. Res. 16:3341-3358,1988) tested a series of tandem 14 nucleobase oligonucleotides, and a 28 and 42 nucleobase oligonucleotides comprised of the sequence of two or three of the tandem oligonucleotides, respectively, for their ability to arrest translation of human DHFR in a rabbit reticulocyte assay. Each of the three 14 nucleobase oligonucleotides alone was able to inhibit translation, albeit at a more modest level than the 28 or 42 nucleobase oligonucleotides.
In certain instances, antisense compounds targeted to a SOD-1 nucleic acid have chemically modified subunits arranged in patterns, or motifs, to confer to the antisense compounds properties such as enhanced inhibitory activity, increased binding affinity for a target nucleic acid, or resistance to degradation by in vivo nucleases.
Chimeric antisense compounds typically contain at least one region modified so as to confer increased resistance to nuclease degradation, increased cellular uptake, increased binding affinity for the target nucleic acid, and/or increased inhibitory activity. A second region of a chimeric antisense compound may optionally serve as a substrate for the cellular endonuclease RNase H, which cleaves the RNA strand of an RNA:DNA duplex.
Antisense compounds having a gapmer motif are considered chimeric antisense compounds. In a gapmer an internal region having a plurality of nucleotides that supports RNaseH cleavage is positioned between external regions having a plurality of nucleotides that are chemically distinct from the nucleosides of the internal region. In the case of an oligonucleotide having a gapmer motif, the gap segment generally serves as the substrate for endonuclease cleavage, while the wing segments comprise modified nucleosides. In certain instances, the regions of a gapmer are differentiated by the types of sugar moieties comprising each distinct region. The types of sugar moieties that are used to differentiate the regions of a gapmer may in some instances include β-D-ribonucleosides, β-D-deoxyribonucleosides, 2'-modified nucleosides (such 2'-modified nucleosides may include 2'-MOE, and 2'-O-CH3, among others), and bicyclic sugar modified nucleosides (such bicyclic sugar modified nucleosides may include those having a 4'-(CH2)n-O-2' bridge, where n=1 or n=2 and 4'-CH2-O-CH2-2'). In certain instances, wings may include several modified sugar moieties, including, for example 2'-MOE. In certain instances, wings may include several modified and unmodified sugar moieties. In certain instances, wings may include various combinations of 2'-MOE nucleosides and 2'-deoxynucleosides.
Each distinct region may comprise uniform sugar moieties, variant, or alternating sugar moieties. The wing-gap-wing motif is frequently described as "X-Y-Z", where "X" represents the length of the 5' wing, "Y" represents the length of the gap, and "Z" represents the length of the 3' wing. "X" and "Z" may comprise uniform, variant, or alternating sugar moieties. In certain instances, "X" and "Y" may include one or more 2'-deoxynucleosides. "Y" may comprise 2'-deoxynucleosides. As used herein, a gapmer described as "X-Y-Z" has a configuration such that the gap is positioned immediately adjacent to each of the 5' wing and the 3' wing. Thus, no intervening nucleotides exist between the 5' wing and gap, or the gap and the 3' wing. Any of the antisense compounds described herein can have a gapmer motif. In certain instances, "X" and "Z" are the same; in other instances they are different.
In certain instances, gapmers described herein include, for example 20-mers having a motif of 5-10-5.
In certain instances, gapmers described herein include, for example 19-mers having a motif of 5-9-5.
In certain instances, gapmers described herein include, for example 18-mers having a motif of 5-8-5.
In certain instances, gapmers described herein include, for example 18-mers having a motif of 4-8-5.
In certain instances, gapmers described herein include, for example 18-mers having a motif of 5-8-7.
In certain instances, gapmers described herein include, for example 18-mers having a motif of 6-8-6.
In certain instances, gapmers described herein include, for example 18-mers having a motif of 6-8-5.
In certain instances, the modified oligonucleotide contains at least one 2'-O-methoxyethyl modified nucleoside , at least one cEt modified nucleoside , and at least one 2'-deoxynucleoside. In certain instances, the modified oligonucleotide has a sugar chemistry motif of any of the following:
- ekddddddddekekee
- kekeddddddddekek
- eeeedddddddddkkee
- eeeeddddddddekeke
- eeeeddddddddkekee
- eeeeddddddddkkeee
- eeeeeddddddddkkee
- eeeekddddddddkeee
- eeeekdddddddkeeee
- eeekddddddddkeeee
- eeekkdddddddkkeee
- eekkdddddddddkkee
- eekkddddddddeeeee
- eekkddddddddkkeee
- ekekddddddddeeeee
- ekekddddddddkekee
- kekeddddddddeeeee, wherein e =a 2'-O-methoxyethylribose modified sugar,k =a cEt modified sugar,d =a 2'-deoxyribose sugar,
Nucleotide sequences that encode SOD-1 include, without limitation, the following: GENBANK Accession No. NM_000454.4 (incorporated herein as SEQ ID NO: 1), GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000 (incorporated herein as SEQ ID NO: 2), and the complement of GENBANK Accession No. NW_001114168.1 truncated from nucleotides 2258000 to 2271000 (incorporated herein as SEQ ID NO: 3).
It is understood that the sequence set forth in each SEQ ID NO in the Examples contained herein is independent of any modification to a sugar moiety, an internucleoside linkage, or a nucleobase. As such, antisense compounds defined by a SEQ ID NO may comprise, independently, one or more modifications to a sugar moiety, an internucleoside linkage, or a nucleobase. Antisense compounds described by Isis Number (Isis No) indicate a combination of nucleobase sequence and motif.
In certain instances, a target region is a structurally defined region of the target nucleic acid. For example, a target region may encompass a 3' UTR, a 5' UTR, an exon, an intron, an exon/intron junction, a coding region, a translation initiation region, translation termination region, or other defined nucleic acid region. The structurally defined regions for SOD-1 can be obtained by accession number from sequence databases such as NCBI. In certain instances, a target region may encompass the sequence from a 5' target site of one target segment within the target region to a 3' target site of another target segment within the same target region.
Targeting includes determination of at least one target segment to which an antisense compound hybridizes, such that a desired effect occurs. In certain instances, the desired effect is a reduction in mRNA target nucleic acid levels. In certain instances, the desired effect is reduction of levels of protein encoded by the target nucleic acid or a phenotypic change associated with the target nucleic acid.
A target region may contain one or more target segments. Multiple target segments within a target region may be overlapping. Alternatively, they may be non-overlapping. In certain instances, target segments within a target region are separated by no more than about 300 nucleotides. In certain instances, target segments within a target region are separated by a number of nucleotides that is, is about, is no more than, is no more than about, 250, 200, 150, 100, 90, 80, 70, 60, 50, 40, 30, 20, or 10 nucleotides on the target nucleic acid, or is a range defined by any two of the preceeding values. In certain instances, target segments within a target region are separated by no more than, or no more than about, 5 nucleotides on the target nucleic acid. In certain instances, target segments are contiguous. Contemplated are target regions defined by a range having a starting nucleic acid that is any of the 5' target sites or 3' target sites listed herein.
Suitable target segments may be found within a 5' UTR, a coding region, a 3' UTR, an intron, an exon, or an exon/intron junction. Target segments containing a start codon or a stop codon are also suitable target segments. A suitable target segment may specifcally exclude a certain structurally defined region such as the start codon or stop codon.
The determination of suitable target segments may include a comparison of the sequence of a target nucleic acid to other sequences throughout the genome. For example, the BLAST algorithm may be used to identify regions of similarity amongst different nucleic acids. This comparison can prevent the selection of antisense compound sequences that may hybridize in a non-specific manner to sequences other than a selected target nucleic acid (i.e., non-target or off-target sequences).
There may be variation in activity (e.g., as defined by percent reduction of target nucleic acid levels) of the antisense compounds within an active target region. In certain instances, reductions in SOD-1 mRNA levels are indicative of inhibition of SOD-1 expression. Reductions in levels of a SOD-1 protein are also indicative of inhibition of target mRNA expression. Phenotypic changes are indicative of inhibition of SOD-1 expression. Improvement in neurological function is indicative of inhibition of SOD-1 expression. Improved motor function is indicative of inhibition of SOD-1 expression.
In some instances, hybridization occurs between an antisense compound disclosed herein and a SOD-1 nucleic acid. The most common mechanism of hybridization involves hydrogen bonding (e.g., Watson-Crick, Hoogsteen or reversed Hoogsteen hydrogen bonding) between complementary nucleobases of the nucleic acid molecules.
Hybridization can occur under varying conditions. Stringent conditions are sequence-dependent and are determined by the nature and composition of the nucleic acid molecules to be hybridized.
Methods of determining whether a sequence is specifically hybridizable to a target nucleic acid are well known in the art. In certain instances, the antisense compounds described herein are specifically hybridizable with a SOD-1 nucleic acid.
An antisense compound and a target nucleic acid are complementary to each other when a sufficient number of nucleobases of the antisense compound can hydrogen bond with the corresponding nucleobases of the target nucleic acid, such that a desired effect will occur (e.g., antisense inhibition of a target nucleic acid, such as a SOD-1 nucleic acid).
Non-complementary nucleobases between an antisense compound and a SOD-1 nucleic acid may be tolerated provided that the antisense compound remains able to specifically hybridize to a target nucleic acid. Moreover, an antisense compound may hybridize over one or more segments of a SOD-1 nucleic acid such that intervening or adjacent segments are not involved in the hybridization event (e.g., a loop structure, mismatch or hairpin structure).
In certain instances, the antisense compounds described herein, or a specified portion thereof, are, or are at least, 70%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% complementary to a SOD-1 nucleic acid, a target region, target segment, or specified portion thereof. Percent complementarity of an antisense compound with a target nucleic acid can be determined using routine methods.
For example, an antisense compound in which 18 of 20 nucleobases of the antisense compound are complementary to a target region, and would therefore specifically hybridize, would represent 90 percent complementarity. In this example, the remaining noncomplementary nucleobases may be clustered or interspersed with complementary nucleobases and need not be contiguous to each other or to complementary nucleobases. As such, an antisense compound which is 18 nucleobases in length having 4 (four) noncomplementary nucleobases which are flanked by two regions of complete complementarity with the target nucleic acid would have 77.8% overall complementarity with the target nucleic acid and would thus fall within the scope of the present invention. Percent complementarity of an antisense compound with a region of a target nucleic acid can be determined routinely using BLAST programs (basic local alignment search tools) and PowerBLAST programs known in the art (Altschul et al., J. Mol. Biol., 1990, 215, 403 410; Zhang and Madden, Genome Res., 1997, 7, 649 656). Percent homology, sequence identity or complementarity, can be determined by, for example, the Gap program (Wisconsin Sequence Analysis Package, Version 8 for Unix, Genetics Computer Group, University Research Park, Madison Wis.), using default settings, which uses the algorithm of Smith and Waterman (Adv. Appl. Math., 1981, 2, 482 489).
In certain instances, the antisense compounds described herein, or specified portions thereof, are fully complementary (i.e., 100% complementary) to a target nucleic acid, or specified portion thereof. For example, an antisense compound may be fully complementary to a SOD-1 nucleic acid, or a target region, or a target segment or target sequence thereof. As used herein, "fully complementary" means each nucleobase of an antisense compound is capable of precise base pairing with the corresponding nucleobases of a target nucleic acid. For example, a 20 nucleobase antisense compound is fully complementary to a target sequence that is 400 nucleobases long, so long as there is a corresponding 20 nucleobase portion of the target nucleic acid that is fully complementary to the antisense compound. Fully complementary can also be used in reference to a specified portion of the first and /or the second nucleic acid. For example, a 20 nucleobase portion of a 30 nucleobase antisense compound can be "fully complementary" to a target sequence that is 400 nucleobases long. The 20 nucleobase portion of the 30 nucleobase oligonucleotide is fully complementary to the target sequence if the target sequence has a corresponding 20 nucleobase portion wherein each nucleobase is complementary to the 20 nucleobase portion of the antisense compound. At the same time, the entire 30 nucleobase antisense compound may or may not be fully complementary to the target sequence, depending on whether the remaining 10 nucleobases of the antisense compound are also complementary to the target sequence.
The location of a non-complementary nucleobase may be at the 5' end or 3' end of the antisense compound. Alternatively, the non-complementary nucleobase or nucleobases may be at an internal position of the antisense compound. When two or more non-complementary nucleobases are present, they may be contiguous (i.e., linked) or non-contiguous. In one instance, a non-complementary nucleobase is located in the wing segment of a gapmer oligonucleotide.
In certain instances, antisense compounds that are, or are up to 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 nucleobases in length comprise no more than 4, no more than 3, no more than 2, or no more than 1 non-complementary nucleobase(s) relative to a target nucleic acid, such as a SOD-1 nucleic acid, or specified portion thereof.
In certain instances, antisense compounds that are, or are up to 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 nucleobases in length comprise no more than 6, no more than 5, no more than 4, no more than 3, no more than 2, or no more than 1 non-complementary nucleobase(s) relative to a target nucleic acid, such as a SOD-1 nucleic acid, or specified portion thereof.
The antisense compounds described herein also include those which are complementary to a portion of a target nucleic acid. As used herein, "portion" refers to a defined number of contiguous (i.e. linked) nucleobases within a region or segment of a target nucleic acid. A "portion" can also refer to a defined number of contiguous nucleobases of an antisense compound. In certain instances, the antisense compounds, are complementary to at least an 8 nucleobase portion of a target segment. In certain instances, the antisense compounds are complementary to at least a 9 nucleobase portion of a target segment. In certain instances, the antisense compounds are complementary to at least a 10 nucleobase portion of a target segment. In certain instances, the antisense compounds, are complementary to at least an 11 nucleobase portion of a target segment. In certain instances, the antisense compounds, are complementary to at least a 12 nucleobase portion of a target segment. In certain instances, the antisense compounds, are complementary to at least a 13 nucleobase portion of a target segment. In certain instances, the antisense compounds, are complementary to at least a 14 nucleobase portion of a target segment. In certain instances, the antisense compounds, are complementary to at least a 15 nucleobase portion of a target segment. Also contemplated are antisense compounds that are complementary to at least a 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, or more nucleobase portion of a target segment, or a range defined by any two of these values.
The antisense compounds described herein may also have a defined percent identity to a particular nucleotide sequence, SEQ ID NO, or compound represented by a specific Isis number, or portion thereof. As used herein, an antisense compound is identical to the sequence disclosed herein if it has the same nucleobase pairing ability. For example, a RNA which contains uracil in place of thymidine in a disclosed DNA sequence would be considered identical to the DNA sequence since both uracil and thymidine pair with adenine. Shortened and lengthened versions of the antisense compounds described herein as well as compounds having non-identical bases relative to the antisense compounds described herein also are contemplated. The non-identical bases may be adjacent to each other or dispersed throughout the antisense compound. Percent identity of an antisense compound is calculated according to the number of bases that have identical base pairing relative to the sequence to which it is being compared.
In certain instances, the antisense compounds, or portions thereof, are at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99% or 100% identical to one or more of the antisense compounds or SEQ ID NOs, or a portion thereof, disclosed herein.
In certain instances, a portion of the antisense compound is compared to an equal length portion of the target nucleic acid. In certain instances, an 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleobase portion is compared to an equal length portion of the target nucleic acid.
In certain instances, a portion of the oligonucleotide is compared to an equal length portion of the target nucleic acid. In certain instances, an 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleobase portion is compared to an equal length portion of the target nucleic acid.
A nucleoside is a base-sugar combination. The nucleobase (also known as base) portion of the nucleoside is normally a heterocyclic base moiety. Nucleotides are nucleosides that further include a phosphate group covalently linked to the sugar portion of the nucleoside. For those nucleosides that include a pentofuranosyl sugar, the phosphate group can be linked to the 2', 3' or 5' hydroxyl moiety of the sugar. Oligonucleotides are formed through the covalent linkage of adjacent nucleosides to one another, to form a linear polymeric oligonucleotide. Within the oligonucleotide structure, the phosphate groups are commonly referred to as forming the internucleoside linkages of the oligonucleotide.
Modifications to antisense compounds encompass substitutions or changes to internucleoside linkages, sugar moieties, or nucleobases. Modified antisense compounds are often preferred over native forms because of desirable properties such as, for example, enhanced cellular uptake, enhanced affinity for nucleic acid target, increased stability in the presence of nucleases, or increased inhibitory activity.
Chemically modified nucleosides may also be employed to increase the binding affinity of a shortened or truncated oligonucleotide for its target nucleic acid. Consequently, comparable results can often be obtained with shorter antisense compounds that have such chemically modified nucleosides.
The naturally occuring internucleoside linkage of RNA and DNA is a 3' to 5' phosphodiester linkage. Antisense compounds having one or more modified, i.e. non-naturally occurring, internucleoside linkages are often selected over antisense compounds having naturally occurring internucleoside linkages because of desirable properties such as, for example, enhanced cellular uptake, enhanced affinity for target nucleic acids, and increased stability in the presence of nucleases.
Oligonucleotides having modified internucleoside linkages include internucleoside linkages that retain a phosphorus atom as well as internucleoside linkages that do not have a phosphorus atom. Representative phosphorus containing internucleoside linkages include, but are not limited to, phosphodiesters, phosphotriesters, methylphosphonates, phosphoramidate, and phosphorothioates. Methods of preparation of phosphorous-containing and non-phosphorous-containing linkages are well known.
In certain instances, modified oligonucleotides targeted to a SOD-1 nucleic acid comprise one or more modified internucleoside linkages. In certain instances, the modified internucleoside linkages are interspersed throughout the antisense compound. In certain instances, the modified internucleoside linkages are phosphorothioate linkages. In certain instances, each internucleoside linkage of a modified oligonucleotide is a phosphorothioate internucleoside linkage.
In certain instances, the modified oligonucleotides targeted to a SOD-1 nucleic acid comprise one or more phosphodiester internucleoside linkages. In certain instances, modified oligonucleotides targeted to a SOD-1 nucleic acid comprise at least one phosphorothioate internucleoside linkage and at least one phosphodiester internucleoside linkage. In certain instances, the modified oligonucleotide has a mixed backbone motif of the following:
- sossssssssoooss,
- sooossssssssoss,
- sooosssssssssoss,
- soosssssssssooss,
- sooossssssssooss,
- sooosssssssssooss,
- sooossssssssssooss,
- sooosssssssssssooos,
- soooossssssssssooss,
- sooosssssssssssooss,
- sososssssssssssosos, and
- sooossssssssssoooss, wherein s =a phosphorothioate internucleoside linkage, ando =a phosphodiester internucleoside linkage.
Antisense compounds of the invention can optionally contain one or more nucleosides wherein the sugar group has been modified. Such sugar modified nucleosides may impart enhanced nuclease stability, increased binding affinity, or some other beneficial biological property to the antisense compounds. In certain instances, nucleosides comprise chemically modified ribofuranose ring moieties. Examples of chemically modified ribofuranose rings include without limitation, addition of substitutent groups (including 5' and 2' substituent groups, bridging of non-geminal ring atoms to form bicyclic nucleic acids (BNA), replacement of the ribosyl ring oxygen atom with S, N(R), or C(R1)(R2) (R, R1 and R2 are each independently H, C1-C12 alkyl or a protecting group) and combinations thereof. Examples of chemically modified sugars include 2'-F-5'-methyl substituted nucleoside (see PCT International Application WO 2008/101157 Published on 8/21/08 for other disclosed 5',2'-bis substituted nucleosides) or replacement of the ribosyl ring oxygen atom with S with further substitution at the 2'-position (see published U.S. Patent Application US2005-0130923, published on June 16, 2005 ) or alternatively 5'-substitution of a BNA (see PCT International Application WO 2007/134181 Published on 11/22/07 wherein LNA is substituted with for example a 5'-methyl or a 5'-vinyl group).
Examples of nucleosides having modified sugar moieties include without limitation nucleosides comprising 5'-vinyl, 5'-methyl (R or S), 4'-S, 2'-F, 2'-OCH3, 2'-OCH2CH3, 2'-OCH2CH2F and 2'-O(CH2)2OCH3 substituent groups. The substituent at the 2' position can also be selected from allyl, amino, azido, thio, O-allyl, O-C1-C10 alkyl, OCF3, OCH2F, O(CH2)2SCH3, O(CH2)2-O-N(Rm)(Rn), O-CH2-C(=O)-N(Rm)(Rn), and O-CH2-C(=O)-N(R1)-(CH2)2-N(Rm)(Rn), where each R1, Rm and Rn is, independently, H or substituted or unsubstituted C1-C20 alkyl.
As used herein, "bicyclic nucleosides" refer to modified nucleosides comprising a bicyclic sugar moiety. Examples of bicyclic nucleic acids (BNAs) include without limitation nucleosides comprising a bridge between the 4' and the 2' ribosyl ring atoms. In certain instances, antisense compounds described herein include one or more BNA nucleosides wherein the bridge comprises one of the formulas: 4'-(CH2)-O-2' (LNA); 4'-(CH2)-S-2'; 4'-(CH2)2-O-2' (ENA); 4'-CH(CH3)-O-2' and 4'-CH(CH2OCH3)-O-2' (and analogs thereof see U.S. Patent 7,399,845, issued on July 15, 2008 ); 4'-C(CH3)(CH3)-O-2' (and analogs thereof see PCT/US2008/068922 published as WO/2009/006478, published January 8, 2009 ); 4'-CH2-N(OCH3)-2' (and analogs thereof see PCT/US2008/064591 published as WO/2008/150729, published December 11, 2008 ); 4-CH2-ON(CH3)-2' (see published U.S. Patent Application US2004-0171570, published September 2, 2004 ); 4'-CH2-N(R)-O-2', wherein R is H, C1-C12 alkyl, or a protecting group (see U.S. Patent 7,427,672, issued on September 23, 2008 ); 4'-CH2-C(H)(CH3)-2' (see Chattopadhyaya et al., J. Org. Chem., 2009, 74, 118-134); and 4'-CH2-C(=CH2)-2' (and analogs thereof see PCT/US2008/066154 published as WO 2008/154401, published on December 8, 2008 ).
Further bicyclic nucleosides have been reported in published literature (see for example: Srivastava et al., J. Am. Chem. Soc., 2007, 129(26) 8362-8379; Frieden et al., Nucleic Acids Research, 2003, 21, 6365-6372; Elayadi et al., Curr. Opinion Invens. Drugs, 2001, 2, 558-561; Braasch et al., Chem. Biol., 2001, 8, 1-7; Orum et al., Curr. Opinion Mol. Ther., 2001, 3, 239-243; Wahlestedt et al., Proc. Natl. Acad. Sci. U. S. A., 2000, 97, 5633-5638; Singh et al., Chem. Commun., 1998, 4, 455-456; Koshkin et al., Tetrahedron, 1998, 54, 3607-3630; Kumar et al., Bioorg. Med. Chem. Lett., 1998, 8, 2219-2222; Singh et al., J. Org. Chem., 1998, 63, 10035-10039; U.S. Patents Nos.: 7,399,845 ; 7,053,207 ; 7,034,133 ; 6,794,499 ; 6,770,748 ; 6,670,461 ; 6,525,191 ; 6,268,490 ; U.S. Patent Publication Nos.: US2008-0039618 ; US2007-0287831 ; US2004-0171570 ; U.S. Patent Applications, Serial Nos.: 12/129,154 ; 61/099,844 ; 61/097,787 ; 61/086,231 ; 61/056,564 ; 61/026,998 ; 61/026,995 ; 60/989,574 ; International applications WO 2007/134181 ; WO 2005/021570 ; WO 2004/106356 ; WO 94/14226 ; and PCT International Applications Nos.: PCT/US2008/068922 ; PCT/US2008/066154 ; and PCT/US2008/064591 ). Each of the foregoing bicyclic nucleosides can be prepared having one or more stereochemical sugar configurations including for example α-L-ribofuranose and β-D-ribofuranose (see PCT international application PCT/DK98/00393, published on March 25, 1999 as WO 99/14226 ).
As used herein, "monocylic nucleosides" refer to nucleosides comprising modified sugar moieties that are not bicyclic sugar moieties. In certain instances, the sugar moiety, or sugar moiety analogue, of a nucleoside may be modified or substituted at any position.
As used herein, "4'-2' bicyclic nucleoside" or "4' to 2' bicyclic nucleoside" refers to a bicyclic nucleoside comprising a furanose ring comprising a bridge connecting two carbon atoms of the furanose ring connects the 2' carbon atom and the 4' carbon atom of the sugar ring.
In certain instances, bicyclic sugar moieties of BNA nucleosides include, but are not limited to, compounds having at least one bridge between the 4' and the 2' carbon atoms of the pentofuranosyl sugar moiety including without limitation, bridges comprising 1 or from 1 to 4 linked groups independently selected from -[C(Ra)(Rb)]n-, -C(Ra)=C(Rb)-, -C(Ra)=N-, -C(=NRa)-, - C(=O)-, -C(=S)-, -O-, -Si(Ra)2-, -S(=O)x-, and -N(Ra)-; wherein: x is 0, 1, or 2; n is 1, 2, 3, or 4; each Ra and Rb is, independently, H, a protecting group, hydroxyl, C1-C12 alkyl, substituted C1-C12 alkyl, C2-C12 alkenyl, substituted C2-C12 alkenyl, C2-C12 alkynyl, substituted C2-C12 alkynyl, C5-C20 aryl, substituted C5-C20 aryl, heterocycle radical, substituted heterocycle radical, heteroaryl, substituted heteroaryl, C5-C7 alicyclic radical, substituted C5-C7 alicyclic radical, halogen, OJ1, NJ1J2, SJ1, N3, COOJ1, acyl (C(=O)-H), substituted acyl, CN, sulfonyl (S(=O)2-J1), or sulfoxyl (S(=O)-J1); and
each J1 and J2 is, independently, H, C1-C12 alkyl, substituted C1-C12 alkyl, C2-C12 alkenyl, substituted C2-C12 alkenyl, C2-C12 alkynyl, substituted C2-C12 alkynyl, C5-C20 aryl, substituted C5-C20 aryl, acyl (C(=O)-H), substituted acyl, a heterocycle radical, a substituted heterocycle radical, C1-C12 aminoalkyl, substituted C1-C12 aminoalkyl or a protecting group.
In certain instances, the bridge of a bicyclic sugar moiety is, -[C(Ra)(Rb)]n-, -[C(Ra)(Rb)]n-O-, -C(RaRb)-N(R)-O- or -C(RaRb)-O-N(R)-. In certain instances, the bridge is 4'-CH2-2', 4'-(CH2)2-2', 4'-(CH2)3-2', 4'-CH2-O-2', 4'-(CH2)2-O-2', 4'-CH2-O-N(R)-2' and 4'-CH2-N(R)-O-2'- wherein each R is, independently, H, a protecting group or C1-C12 alkyl.
In certain instances, bicyclic nucleosides are further defined by isomeric configuration. For example, a nucleoside comprising a 4'-(CH2)-O-2' bridge, may be in the α-L configuration or in the β-D configuration. Previously, α-L-methyleneoxy (4'-CH2-O-2') BNA's have been incorporated into antisense oligonucleotides that showed antisense activity (Frieden et al., Nucleic Acids Research, 2003, 21, 6365-6372).
In certain instances, bicyclic nucleosides include those having a 4' to 2' bridge wherein such bridges include without limitation, α-L-4'-(CH2)-O-2', β-D-4'-CH2-O-2', 4'-(CH2)2-O-2', 4'-CH2-ON(R)-2', 4'-CH2-N(R)-O-2', 4'-CH(CH3)-O-2', 4'-CH2-S-2', 4'-CH2-N(R)-2', 4'-CH2-CH(CH3)-2', and 4'-(CH2)3-2', wherein R is H, a protecting group or C1-C12 alkyl.
In certaininstance, bicyclic nucleosides have the formula:
wherein:
- Bx is a heterocyclic base moiety;
- -Qa-Qb-Qc- is -CH2-N(Rc)-CH2-, -C(=O)-N(Rc)-CH2-, -CH2-O-N(Rc)-, -CH2-N(Rc)-O- or - N(Rc)-O-CH2;
- Rc is C1-C12 alkyl or an amino protecting group; and
- Ta and Tb are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium.
In certain instances, bicyclic nucleosides have the formula:
wherein:
- Bx is a heterocyclic base moiety;
- Ta and Tb are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
- Za is C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, substituted C1-C6 alkyl, substituted C2-C6 alkenyl, substituted C2-C6 alkynyl, acyl, substituted acyl, substituted amide, thiol or substituted thiol.
In one instance, each of the substituted groups, is, independently, mono or poly substituted with substituent groups independently selected from halogen, oxo, hydroxyl, OJc, NJcJd, SJc, N3, OC(=X)Jc, and NJeC(=X)NJcJd, wherein each Jc, Jd and Je is, independently, H, C1-C6 alkyl, or substituted C1-C6 alkyl and X is O or NJc.
In certain instances, bicyclic nucleosides have the formula:
wherein:
- Bx is a heterocyclic base moiety;
- Ta and Tb are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
- Zb is C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, substituted C1-C6 alkyl, substituted C2-C6 alkenyl, substituted C2-C6 alkynyl or substituted acyl (C(=O)-).
In certain instances, bicyclic nucleosides have the formula:
wherein:
- Bx is a heterocyclic base moiety;
- Ta and Tb are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
- Rd is C1-C6 alkyl, substituted C1-C6 alkyl, C2-C6 alkenyl, substituted C2-C6 alkenyl, C2-C6 alkynyl or substituted C2-C6 alkynyl;
- each qa, qb, qc and qd is, independently, H, halogen, C1-C6 alkyl, substituted C1-C6 alkyl, C2-C6 alkenyl, substituted C2-C6 alkenyl, C2-C6 alkynyl or substituted C2-C6 alkynyl, C1-C6 alkoxyl, substituted C1-C6 alkoxyl, acyl, substituted acyl, C1-C6 aminoalkyl or substituted C1-C6 aminoalkyl;
In certain instances, bicyclic nucleosides have the formula:
wherein:
- Bx is a heterocyclic base moiety;
- Ta and Tb are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
- qa, qb, qe and qf are each, independently, hydrogen, halogen, C1-C12 alkyl, substituted C1-C12 alkyl, C2-C12 alkenyl, substituted C2-C12 alkenyl, C2-C12 alkynyl, substituted C2-C12 alkynyl, C1-C12 alkoxy, substituted C1-C12 alkoxy, OJj, SJj, SOJj, SO2Jj, NJjJk, N3, CN, C(=O)OJj, C(=O)NJjJk, C(=O)Jj, O-C(=O)NJjJk, N(H)C(=NH)NJjJk, N(H)C(=O)NJjJk or N(H)C(=S)NJjJk;
- or qe and qf together are =C(qg)(qh);
- qg and qh are each, independently, H, halogen, C1-C12 alkyl or substituted C1-C12 alkyl.
The synthesis and preparation of adenine, cytosine, guanine, 5-methyl-cytosine, thymine and uracil bicyclic nucleosides having a 4'-CH2-O-2' bridge, along with their oligomerization, and nucleic acid recognition properties have been described (Koshkin et al., Tetrahedron, 1998, 54, 3607-3630). The synthesis of bicyclic nucleosides has also been described in WO 98/39352 and WO 99/14226 .
Analogs of various bicyclic nucleosides that have 4' to 2' bridging groups such as 4'-CH2-O-2' and 4'-CH2-S-2', have also been prepared (Kumar et al., Bioorg. Med. Chem. Lett., 1998, 8, 2219-2222). Preparation of oligodeoxyribonucleotide duplexes comprising bicyclic nucleosides for use as substrates for nucleic acid polymerases has also been described ( Wengel et al., WO 99/14226 ). Furthermore, synthesis of 2'-amino-BNA, a novel conformationally restricted high-affinity oligonucleotide analog has been described in the art (Singh et al., J. Org. Chem., 1998, 63, 10035-10039). In addition, 2'-amino- and 2'-methylamino-BNA's have been prepared and the thermal stability of their duplexes with complementary RNA and DNA strands has been previously reported.
In certain instances, bicyclic nucleosides have the formula:
wherein:
- Bx is a heterocyclic base moiety;
- Ta and Tb are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
- each qi, qj, qk and q1 is, independently, H, halogen, C1-C12 alkyl, substituted C1-C12 alkyl, C2-C12 alkenyl, substituted C2-C12 alkenyl, C2-C12 alkynyl, substituted C2-C12 alkynyl, C1-C12 alkoxyl, substituted C1-C12 alkoxyl, OJj, SJj, SOJj, SO2Jj, NJjJk, N3, CN, C(=O)OJj, C(=O)NJjJk, C(=O)Jj, O-C(=O)NJjJk, N(H)C(=NH)NJjJk, N(H)C(=O)NJjJk or N(H)C(=S)NJjJk; and
- qi and qj or qi and qk together are =C(qg)(qh), wherein qg and qh are each, independently, H, halogen, C1-C12 alkyl or substituted C1-C12 alkyl.
One carbocyclic bicyclic nucleoside having a 4'-(CH2)3-2' bridge and the alkenyl analog bridge 4'-CH=CH-CH2-2' have been described (Frier et al., Nucleic Acids Research, 1997, 25(22), 4429-4443 and Albaek et al., J. Org. Chem., 2006, 71, 7731-7740). The synthesis and preparation of carbocyclic bicyclic nucleosides along with their oligomerization and biochemical studies have also been described (Srivastava et al., J. Am. Chem. Soc. 2007,129(26), 8362-8379).
In certain instances, bicyclic nucleosides include, but are not limited to, (A) α-L-methyleneoxy (4'-CH2-O-2') BNA, (B) β-D-methyleneoxy (4'-CH2-O-2') BNA, (C) ethyleneoxy (4'-(CH2)2-O-2') BNA, (D) aminooxy (4'-CH2-O-N(R)-2') BNA, (E) oxyamino (4'-CH2-N(R)-O-2') BNA, (F) methyl(methyleneoxy) (4'-CH(CH3)-O-2') BNA (also referred to as constrained ethyl or cEt), (G) methylene-thio (4'-CH2-S-2') BNA, (H) methylene-amino (4'-CH2-N(R)-2') BNA, (I) methyl carbocyclic (4'-CH2-CH(CH3)-2') BNA, (J) propylene carbocyclic (4'-(CH2)3-2') BNA, and (K) vinyl BNA as depicted below.
wherein Bx is the base moiety and R is, independently, H, a protecting group, C1-C6 alkyl or C1-C6 alkoxy.
As used herein, the term "modified tetrahydropyran nucleoside" or "modified THP nucleoside" means a nucleoside having a six-membered tetrahydropyran "sugar" substituted for the pentofuranosyl residue in normal nucleosides and can be referred to as a sugar surrogate. Modified THP nucleosides include, but are not limited to, what is referred to in the art as hexitol nucleic acid (HNA), anitol nucleic acid (ANA), manitol nucleic acid (MNA) (see Leumann, Bioorg. Med. Chem., 2002, 10, 841-854) or fluoro HNA (F-HNA) having a tetrahydropyranyl ring system as illustrated below.
In certain instance, sugar surrogates are selected having the formula:
wherein:
- Bx is a heterocyclic base moiety;
- T3 and T4 are each, independently, an internucleoside linking group linking the tetrahydropyran nucleoside analog to the oligomeric compound or one of T3 and T4 is an internucleoside linking group linking the tetrahydropyran nucleoside analog to an oligomeric compound or oligonucleotide and the other of T3 and T4 is H, a hydroxyl protecting group, a linked conjugate group or a 5' or 3'-terminal group;
- q1, q2, q3, q4, q5, q6 and q7 are each independently, H, C1-C6 alkyl, substituted C1-C6 alkyl, C2-C6 alkenyl, substituted C2-C6 alkenyl, C2-C6 alkynyl or substituted C2-C6 alkynyl; and
- one of R1 and R2 is hydrogen and the other is selected from halogen, substituted or unsubstituted alkoxy, NJ1J2, SJ1, N3, OC(=X)J1, OC(=X)NJ1J2, NJ3C(=X)NJ1J2 and CN, wherein X is O, S or NJ1 and each J1, J2 and J3 is, independently, H or C1-C6 alkyl.
In certain instances, q1, q2, q3, q4, q5, q6 and q7 are each H. In certain instances, at least one of q1, q2, q3, q4, q5, q6 and q7 is other than H. In certain instances, at least one of q1, q2, q3, q4, q5, q6 and q7 is methyl. In certain instances, THP nucleosides are provided wherein one of R1 and R2 is F. In certain instances, R1 is fluoro and R2 is H; R1 is methoxy and R2 is H, and R1 is methoxyethoxy and R2 is H.
In certain instances, sugar surrogates comprise rings having more than 5 atoms and more than one heteroatom. For example nucleosides comprising morpholino sugar moieties and their use in oligomeric compounds has been reported (see for example: Braasch et al., Biochemistry, 2002, 41, 4503-4510; and U.S. Patents 5,698,685 ; 5,166,315 ; 5,185,444 ; and 5,034,506 ). As used here, the term "morpholino" means a sugar surrogate having the following formula:
In certain instances, morpholinos may be modified, for example by adding or altering various substituent groups from the above morpholino structure. Such sugar surrogates are referred to herein as "modifed morpholinos."
Combinations of modifications are also provided without limitation, such as 2'-F-5'-methyl substituted nucleosides (see PCT International Application WO 2008/101157 published on 8/21/08 for other disclosed 5', 2'-bis substituted nucleosides) and replacement of the ribosyl ring oxygen atom with S and further substitution at the 2'-position (see published U.S. Patent Application US2005-0130923, published on June 16, 2005 ) or alternatively 5'-substitution of a bicyclic nucleic acid (see PCT International Application WO 2007/134181 , published on 11/22/07 wherein a 4'-CH2-O-2' bicyclic nucleoside is further substituted at the 5' position with a 5'-methyl or a 5'-vinyl group). The synthesis and preparation of carbocyclic bicyclic nucleosides along with their oligomerization and biochemical studies have also been described (see, e.g., Srivastava et al., J. Am. Chem. Soc. 2007,129(26), 8362-8379).
In certain instances, antisense compounds comprise one or more modified cyclohexenyl nucleosides, which is a nucleoside having a six-membered cyclohexenyl in place of the pentofuranosyl residue in naturally occurring nucleosides. Modified cyclohexenyl nucleosides include, but are not limited to those described in the art (see for example commonly owned, published PCT Application WO 2010/036696, published on April 10, 2010 , Robeyns et al., J. Am. Chem. Soc., 2008, 130(6), 1979-1984; Horváth et al., Tetrahedron Letters, 2007, 48, 3621-3623; Nauwelaerts et al., J. Am. Chem. Soc., 2007, 129(30), 9340-9348; Gu et al.,, Nucleosides, Nucleotides & Nucleic Acids, 2005, 24(5-7), 993-998; Nauwelaerts et al., Nucleic Acids Research, 2005, 33(8), 2452-2463; Robeyns et al., Acta Crystallographica, Section F: Structural Biology and Crystallization Communications, 2005, F61(6), 585-586; Gu et al., Tetrahedron, 2004, 60(9), 2111-2123; Gu et al., Oligonucleotides, 2003, 13(6), 479-489; Wang et al., J. Org. Chem., 2003, 68, 4499-4505; Verbeure et al., Nucleic Acids Research, 2001, 29(24), 4941-4947; Wang et al., J. Org. Chem., 2001, 66, 8478-82; Wang et al., Nucleosides, Nucleotides & Nucleic Acids, 2001, 20(4-7), 785-788; Wang et al., J. Am. Chem., 2000, 122, 8595-8602; Published PCT application, WO 06/047842 ; and Published PCT Application WO 01/049687 ). Certain modified cyclohexenyl nucleosides have Formula X.
wherein independently for each of said at least one cyclohexenyl nucleoside analog of Formula X:
- Bx is a heterocyclic base moiety;
- T3 and T4 are each, independently, an internucleoside linking group linking the cyclohexenyl nucleoside analog to an antisense compound or one of T3 and T4 is an internucleoside linking group linking the tetrahydropyran nucleoside analog to an antisense compound and the other of T3 and T4 is H, a hydroxyl protecting group, a linked conjugate group, or a 5'-or 3'-terminal group; and
- q1, q2, q3, q4, q5, q6, q7, q8 and q9 are each, independently, H, C1-C6 alkyl, substituted C1-C6 alkyl, C2-C6 alkenyl, substituted C2-C6 alkenyl, C2-C6 alkynyl, substituted C2-C6 alkynyl or other sugar substituent group.
Many other monocyclic, bicyclic and tricyclic ring systems are known in the art and are suitable as sugar surrogates that can be used to modify nucleosides for incorporation into oligomeric compounds as provided herein (see for example review article: Leumann, Christian J. Bioorg. & Med. Chem., 2002, 10, 841-854). Such ring systems can undergo various additional substitutions to further enhance their activity.
As used herein, "2'-modified sugar" means a furanosyl sugar modified at the 2' position. In certain instances, such modifications include substituents selected from: a halide, including, but not limited to substituted and unsubstituted alkoxy, substituted and unsubstituted thioalkyl, substituted and unsubstituted amino alkyl, substituted and unsubstituted alkyl, substituted and unsubstituted allyl, and substituted and unsubstituted alkynyl. In certain instances, 2' modifications are selected from substituents including, but not limited to: O[(CH2)nO]mCH3, O(CH2)nNH2, O(CH2)nCH3, O(CH2)nF, O(CH2)nONH2, OCH2C(=O)N(H)CH3, and O(CH2)nON[(CH2)nCH3]2, where n and m are from 1 to about 10. Other 2'- substituent groups can also be selected from: C1-C12 alkyl, substituted alkyl, alkenyl, alkynyl, alkaryl, aralkyl, O-alkaryl or O-aralkyl, SH, SCH3, OCN, Cl, Br, CN, F, CF3, OCF3, SOCH3, SO2CH3, ONO2, NO2, N3, NH2, heterocycloalkyl, heterocycloalkaryl, aminoalkylamino, polyalkylamino, substituted silyl, an RNA cleaving group, a reporter group, an intercalator, a group for improving pharmacokinetic properties, or a group for improving the pharmacodynamic properties of an antisense compound, and other substituents having similar properties. In certain instances, modifed nucleosides comprise a 2'-MOE side chain (Baker et al., J. Biol. Chem., 1997, 272, 11944-12000). Such 2'-MOE substitution have been described as having improved binding affinity compared to unmodified nucleosides and to other modified nucleosides, such as 2'- O-methyl, O-propyl, and O-aminopropyl. Oligonucleotides having the 2'-MOE substituent also have been shown to be antisense inhibitors of gene expression with promising features for in vivo use (Martin, Helv. Chim. Acta, 1995, 78, 486-504; Altmann et al., Chimia, 1996, 50, 168-176; Altmann et al., Biochem. Soc. Trans., 1996, 24, 630-637; and Altmann et al., Nucleosides Nucleotides, 1997, 16, 917-926).
As used herein, "2'-modified" or "2'-substituted" refers to a nucleoside comprising a sugar comprising a substituent at the 2' position other than H or OH. 2'-modified nucleosides, include, but are not limited to, bicyclic nucleosides wherein the bridge connecting two carbon atoms of the sugar ring connects the 2' carbon and another carbon of the sugar ring; and nucleosides with non-bridging 2'substituents, such as allyl, amino, azido, thio, O-allyl, O-C1-C10 alkyl, -OCF3, O-(CH2)2-O-CH3, 2'-O(CH2)2SCH3, O-(CH2)2-O-N(Rm)(Rn), or O-CH2-C(=O)-N(Rm)(Rn), where each Rm and Rn is, independently, H or substituted or unsubstituted C1-C10 alkyl. 2'-modifed nucleosides may further comprise other modifications, for example at other positions of the sugar and/or at the nucleobase.
As used herein, "2'-F" refers to a nucleoside comprising a sugar comprising a fluoro group at the 2' position of the sugar ring.
As used herein, "2'-OMe" or "2'-OCH3", "2'-O-methyl" or "2'-methoxy" each refers to a nucleoside comprising a sugar comprising an -OCH3 group at the 2' position of the sugar ring.
As used herein, "MOE" or "2'-MOE" or "2'-OCH2CH2OCH3" or "2'-O-methoxyethyl" each refers to a nucleoside comprising a sugar comprising a -OCH2CH2OCH3 group at the 2' position of the sugar ring.
Methods for the preparations of modified sugars are well known to those skilled in the art. Some representative U.S. patents that teach the preparation of such modified sugars include without limitation, U.S.: 4,981,957 ; 5,118,800 ; 5,319,080 ; 5,359,044 ; 5,393,878 ; 5,446,137 ; 5,466,786 ; 5,514,785 ; 5,519,134 ; 5,567,811 ; 5,576,427 ; 5,591,722 ; 5,597,909 ; 5,610,300 ; 5,627,053 ; 5,639,873 ; 5,646,265 ; 5,670,633 ; 5,700,920 ; 5,792,847 and 6,600,032 and International Application PCT/US2005/019219, filed June 2, 2005 and published as WO 2005/121371 on December 22, 2005 .
As used herein, "oligonucleotide" refers to a compound comprising a plurality of linked nucleosides. In certain instances, one or more of the plurality of nucleosides is modified. In certain instances, an oligonucleotide comprises one or more ribonucleosides (RNA) and/or deoxyribonucleosides (DNA).
In nucleotides having modified sugar moieties, the nucleobase moieties (natural, modified or a combination thereof) are maintained for hybridization with an appropriate nucleic acid target.
In certain instances, antisense compounds comprise one or more nucleosides having modified sugar moieties. In certain instances, the modified sugar moiety is 2'-MOE. In certain instances, the 2'-MOE modified nucleosides are arranged in a gapmer motif. In certain instances, the modified sugar moiety is a bicyclic nucleoside having a (4'-CH(CH3)-O-2') bridging group. In certain instances, the (4'-CH(CH3)-O-2') modified nucleosides are arranged throughout the wings of a gapmer motif.
Oligonucleotides may be admixed with pharmaceutically acceptable active or inert substances for the preparation of pharmaceutical compositions or formulations. Compositions and methods for the formulation of pharmaceutical compositions are dependent upon a number of criteria, including, but not limited to, route of administration, extent of disease, or dose to be administered.
An antisense compound targeted to a SOD-1 nucleic acid can be utilized in pharmaceutical compositions by combining the antisense compound with a suitable pharmaceutically acceptable diluent or carrier. A pharmaceutically acceptable diluent includes phosphate-buffered saline (PBS). PBS is a diluent suitable for use in compositions to be delivered parenterally. Accordingly, in one instance, employed in the methods described herein is a pharmaceutical composition comprising an antisense compound targeted to a SOD-1 nucleic acid and a pharmaceutically acceptable diluent. In certain instances, the pharmaceutically acceptable diluent is PBS. In certain instances, the antisense compound is a modified oligonucleotide.
Pharmaceutical compositions comprising antisense compounds encompass any pharmaceutically acceptable salts, esters, or salts of such esters, or any other oligonucleotide which, upon administration to an animal, including a human, is capable of providing (directly or indirectly) the biologically active metabolite or residue thereof. Accordingly, for example, the disclosure is also drawn to pharmaceutically acceptable salts of antisense compounds, prodrugs, pharmaceutically acceptable salts of such prodrugs, and other bioequivalents. Suitable pharmaceutically acceptable salts include, but are not limited to, sodium and potassium salts.
A prodrug can include the incorporation of additional nucleosides at one or both ends of an antisense compound which are cleaved by endogenous nucleases within the body, to form the active antisense compound.
Antisense compounds may be covalently linked to one or more moieties or conjugates which enhance the activity, cellular distribution or cellular uptake of the resulting oligonucleotides. Typical conjugate groups include cholesterol moieties and lipid moieties. Additional conjugate groups include carbohydrates, phospholipids, biotin, phenazine, folate, phenanthridine, anthraquinone, acridine, fluoresceins, rhodamines, coumarins, and dyes.
Antisense compounds can also be modified to have one or more stabilizing groups that are generally attached to one or both termini of antisense compounds to enhance properties such as, for example, nuclease stability. Included in stabilizing groups are cap structures. These terminal modifications protect the antisense compound having terminal nucleic acid from exonuclease degradation, and can help in delivery and/or localization within a cell. The cap can be present at the 5'-terminus (5'-cap), or at the 3'-terminus (3'-cap), or can be present on both termini. Cap structures are well known in the art and include, for example, inverted deoxy abasic caps. Further 3' and 5'-stabilizing groups that can be used to cap one or both ends of an antisense compound to impart nuclease stability include those disclosed in WO 03/004602 published on January 16, 2003 .
The effects of antisense compounds on the level, activity or expression of SOD-1 nucleic acids can be tested in vitro in a variety of cell types. Cell types used for such analyses are available from commerical vendors (e.g. American Type Culture Collection, Manassus, VA; Zen-Bio, Inc., Research Triangle Park, NC; Clonetics Corporation, Walkersville, MD) and are cultured according to the vendor's instructions using commercially available reagents (e.g. Invitrogen Life Technologies, Carlsbad, CA). Illustrative cell types include, but are not limited to, HepG2 cells, Hep3B cells, primary hepatocytes, A431 cells, and SH-SY5Y cells.
Described herein are methods for treatment of cells with oligonucleotides, which can be modified appropriately for treatment with other antisense compounds.
Cells may be treated with oligonucleotides when the cells reach approximately 60-80% confluency in culture.
One reagent commonly used to introduce oligonucleotides into cultured cells includes the cationic lipid transfection reagent LIPOFECTIN (Invitrogen, Carlsbad, CA). Oligonucleotides may be mixed with LIPOFECTIN in OPTI-MEM 1 (Invitrogen, Carlsbad, CA) to achieve the desired final concentration of oligonucleotide and a LIPOFECTIN concentration that may range from 2 to 12 ug/mL per 100 nM oligonucleotide.
Another reagent used to introduce oligonucleotides into cultured cells includes LIPOFECTAMINE (Invitrogen, Carlsbad, CA). Oligonucleotide is mixed with LIPOFECTAMINE in OPTI-MEM 1 reduced serum medium (Invitrogen, Carlsbad, CA) to achieve the desired concentration of oligonucleotide and a LIPOFECTAMINE concentration that may range from 2 to 12 ug/mL per 100 nM oligonucleotide.
Another technique used to introduce oligonucleotides into cultured cells includes electroporation.
Cells are treated with oligonucleotides by routine methods. Cells may be harvested 16-24 hours after oligonucleotide treatment, at which time RNA or protein levels of target nucleic acids are measured by methods known in the art and described herein. In general, when treatments are performed in multiple replicates, the data are presented as the average of the replicate treatments.
The concentration of oligonucleotide used varies from cell line to cell line. Methods to determine the optimal oligonucleotide concentration for a particular cell line are well known in the art. Oligonucleotides are typically used at concentrations ranging from 1 nM to 300 nM when transfected with LIPOFECTAMINE. Oligonucleotides are used at higher concentrations ranging from 625 to 20,000 nM when transfected using electroporation.
RNA analysis can be performed on total cellular RNA or poly(A)+ mRNA. Methods of RNA isolation are well known in the art. RNA is prepared using methods well known in the art, for example, using the TRIZOL Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer's recommended protocols.
Inhibition of levels or expression of a SOD-1 nucleic acid can be assayed in a variety of ways known in the art. For example, target nucleic acid levels can be quantitated by, e.g., Northern blot analysis, competitive polymerase chain reaction (PCR), or quantitaive real-time PCR. RNA analysis can be performed on total cellular RNA or poly(A)+ mRNA. Methods of RNA isolation are well known in the art. Northern blot analysis is also routine in the art. Quantitative real-time PCR can be conveniently accomplished using the commercially available ABI PRISM 7600, 7700, or 7900 Sequence Detection System, available from PE-Applied Biosystems, Foster City, CA and used according to manufacturer's instructions.
Quantitation of target RNA levels may be accomplished by quantitative real-time PCR using the ABI PRISM 7600, 7700, or 7900 Sequence Detection System (PE-Applied Biosystems, Foster City, CA) according to manufacturer's instructions. Methods of quantitative real-time PCR are well known in the art.
Prior to real-time PCR, the isolated RNA is subjected to a reverse transcriptase (RT) reaction, which produces complementary DNA (cDNA) that is then used as the substrate for the real-time PCR amplification. The RT and real-time PCR reactions are performed sequentially in the same sample well. RT and real-time PCR reagents may be obtained from Invitrogen (Carlsbad, CA). RT real-time-PCR reactions are carried out by methods well known to those skilled in the art.
Gene (or RNA) target quantities obtained by real time PCR are normalized using either the expression level of a gene whose expression is constant, such as cyclophilin A, or by quantifying total RNA using RIBOGREEN (Invitrogen, Inc. Carlsbad, CA). Cyclophilin A expression is quantified by real time PCR, by being run simultaneously with the target, multiplexing, or separately. Total RNA is quantified using RIBOGREEN RNA quantification reagent (Invetrogen, Inc. Eugene, OR). Methods of RNA quantification by RIBOGREEN are SOD-1ght in Jones, L.J., et al, (Analytical Biochemistry, 1998, 265, 368-374). A CYTOFLUOR 4000 instrument (PE Applied Biosystems) is used to measure RIBOGREEN fluorescence.
Probes and primers are designed to hybridize to a SOD-1 nucleic acid. Methods for designing real-time PCR probes and primers are well known in the art, and may include the use of software such as PRIMER EXPRESS Software (Applied Biosystems, Foster City, CA).
Antisense inhibition of SOD-1 nucleic acids can be assessed by measuring SOD-1 protein levels. Protein levels of SOD-1 can be evaluated or quantitated in a variety of ways well known in the art, such as immunoprecipitation, Western blot analysis (immunoblotting), enzyme-linked immunosorbent assay (ELISA), quantitative protein assays, protein activity assays (for example, caspase activity assays), immunohistochemistry, immunocytochemistry or fluorescence-activated cell sorting (FACS). Antibodies directed to a target can be identified and obtained from a variety of sources, such as the MSRS catalog of antibodies (Aerie Corporation, Birmingham, MI), or can be prepared via conventional monoclonal or polyclonal antibody generation methods well known in the art. In certain instances, the compounds herein provide improved reduction in protein levels.
Antisense compounds, for example, modified oligonucleotides, are tested in animals to assess their ability to inhibit expression of SOD-1 and produce phenotypic changes, such as, improved motor function. In certain instances, motor function is measured by walking initiation analysis, rotarod, grip strength, pole climb, open field performance, balance beam, hindpaw footprint testing in the animal. Testing may be performed in normal animals, or in experimental disease models. For administration to animals, oligonucleotides are formulated in a pharmaceutically acceptable diluent, such as phosphate-buffered saline. Administration includes parenteral routes of administration, such as intraperitoneal, intravenous, and subcutaneous. Oligonucleotide dosage and dosing frequency depends upon multiple factors such as, but not limited to, route of administration and animal body weight. Following a period of treatment with oligonucleotides, RNA is isolated from CNS tissue or CSF and changes in SOD-1 nucleic acid expression are measured.
In certain instances, described herein are methods, compounds, and compositions of treating an individual comprising administering one or more pharmaceutical compositions described herein. In certain instances, the individual has a neurodegenerative disease. In certain instances, the individual is at risk for developing a neurodegenerative disease, including, but not limited to, amyotrophic lateral sclerosis (ALS). In certain instances, the individual has been identified as having a SOD-1 associated disease. In certain instances, described herein are methods for prophylactically reducing SOD-1 expression in an individual. Certain instances include treating an individual in need thereof by administering to an individual a therapeutically effective amount of an antisense compound targeted to a SOD-1 nucleic acid.
In one instance, administration of a therapeutically effective amount of an antisense compound targeted to a SOD-1 nucleic acid is accompanied by monitoring of SOD-1 levels in an individual, to determine an individual's response to administration of the antisense compound. An individual's response to administration of the antisense compound may be used by a physician to determine the amount and duration of therapeutic intervention.
In certain instances, administration of an antisense compound targeted to a SOD-1 nucleic acid results in reduction of SOD-1 expression by at least 15, 20, 25, 30, 35, 40, 45, 50, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100%, or a range defined by any two of these values. In certain instances, administration of an antisense compound targeted to a SOD-1 nucleic acid results in improved motor function in an animal. In certain instances, administration of a SOD-1 antisense compound improves motor function by at least 15, 20, 25, 30, 35, 40, 45, 50, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100%, or a range defined by any two of these values.
In certain instances, pharmaceutical compositions comprising an antisense compound targeted to SOD-1 are used for the preparation of a medicament for treating a patient suffering or susceptible to a neurodegenerative disease including amyotrophic lateral sclerosis (ALS).
Antisense oligonucleotides targeting human SOD-1 were described in an earlier publication (see WO 2005/040180 ). Several oligonucleotides (ISIS 333611, ISIS 146144, ISIS 146145, ISIS 150437, ISIS 150441, ISIS 150443, ISIS 150444, ISIS 150445, ISIS 150446, ISIS 150447, ISIS 150448, ISIS 150449, ISIS 150452, ISIS 150454, ISIS 150458, ISIS 150460, ISIS 150462-150467, ISIS 150470, ISIS 150472, ISIS 150474, ISIS 150475, ISIS 150476, ISIS 150479-150483, ISIS 150488, ISIS 150489, ISIS 150490, ISIS 150491-150493, ISIS 150495-150498, ISIS 150511, ISIS 333605, ISIS 333606, ISIS 333609-333617, ISIS 333619, ISIS 333620-333636, ISIS 333638, and ISIS 333640) described therein, were used as comparator compounds throughout select screens for new antisense compounds described herein.
In certain instances, ISIS 333611, a 5-10-5 MOE gapmer, having a sequence of (from 5' to 3') CCGTCGCCCTTCAGCACGCA (incorporated herein as SEQ ID NO: 21), wherein each internucleoside linkage is a phosphorothioate linkage, each cytosine is a 5-methylcytosine, and each of nucleosides 1-5 and 16-20 (from 5' to 3') comprise a 2'-O-methoxyethyl moiety was used as a comparator compound. ISIS 333611 was selected as a comparator compound because it exhibited high levels of dose-dependent inhibition in various studies as described in WO 2005/040180 . Additionally, phase 1 human clinical trials were completed using ISIS 333611. See, MILLER et al., "An antisense oligonucleotide against SOD1 delivered intrathecally for patients with SOD1 familial amyotrophic lateral sclerosis: a phase 1, randomised, first-in-man study" Lancet Neurol. (2013) 12(5): 435-442. Thus, ISIS 333611 was deemed a highly efficacious and potent compound with an acceptable safety profile (such that it was tested in human patients).
In certain instances, the compounds described herein benefit from one or more improved properties relative to the antisense compounds described in WO 2005/040180 . Some of the improved properties are demonstrated in the examples provided herein. In certain instances, compounds described herein are more efficacious, potent, and/or tolerable in various in vitro and in vivo studies than comparator compounds described herein, including ISIS 333611. In certain instances, ISIS 666853, ISIS 666859, ISIS 666919, ISIS 666921, ISIS 666922, ISIS 666869, ISIS 666870, and ISIS 666867 are more efficacious and/or potent in various in vitro and in vivo studies than comparator compounds described herein, including ISIS 333611. In certain instances, ISIS 666853, ISIS 666859, ISIS 666919, ISIS 666921, ISIS 666922, ISIS 666869, ISIS 666870, and ISIS 666867 are more tolerable in one or more tolerability assays in animals than comparator compounds described herein, including ISIS 333611. This is despite 333611 being sufficiently well tolerated to progress to human clinical trials.
In certain instances, certain compounds described herein are more efficacious than comparator compounds by virtue of an in vitro IC50 of less than 2 µM, less than 1.9 µM, less than 1.8 µM, less than 1.7 µM, less than 1.6 µM, less than 1.5 µM, less than 1.4 µM, less than 1.3 µM, less than 1.2 µM, less than 1.1 µM, less than 1 µM, less than 0.9 µM, less than 0.8 µM, less than 0.7 µM, less than 0.6 µM, or less than 0.5 µM less than 0.4 µM, less than 0.3 µM, less than 0.2 µM, less than 0.1 µM, when tested in human cells, for example, in the HepG2 A431 or SH-SY5Y cell lines (For example, see Examples 6-11).
In certain instances, certain compounds described herein are more efficacious than comparator compounds by virtue of their ability to inhibit SOD-1 expression in vivo. In certain instances, the compounds inhibit SOD-1 in lumbar spinal cord and cervical spinal cord by at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90% or at least 95% in, for example, a transgenic animal model.
In certain instances, certain compounds described herein are more tolerable than comparator compounds on the basis of reduced microglial marker levels (e.g.,IBA1), reduced astrocytic marker levels (e.g., GFAP), and/or FOB scores in rats, mice, and/or monkeys. See, for example, Examples 14, 15, 18, and 19.
For example, as provided in Example 12 (hereinbelow), ISIS 666853 achieved 81% inhibition in lumbar spinal cord and 74% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
For example, as provided in Example 14 (hereinbelow), ISIS 666853 achieved a FOB score of 0 whereas ISIS 333611 achieved a FOB score of 4 in Sprague-Dawley rats after 3 hours when treated with 3 mg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666853 treated rats as compared to ISIS 333611 treated rats.
For example, as provided in Example 15 (hereinbelow), ISIS 666853 achieved an ED50 of 81.3 and 242.6 in lumbar tissue and cervical tissue (respectively) in SOD-1 transgenic rats when treated intrathecally with 10, 30, 100, 300, or 3000 µg of oligonucleotide. ED50 in lumbar and cervical tissues could not be calculated in ISIS 333611 treated transgenic rats because the highest concentration tested (3000 µg) filed to inhibit human SOD-1 mRNA greater than 55-65%.
For example, as provided in Example 16 (hereinbelow), at doses of 1 mg and 3 mg ISIS 666853 achieved 3 hour FOB scores of 0.0 and 0.5 (respectively) whereas ISIS 333611 achieved FOB scores of 3.0 and 4.9 (respectively). At doses of 1 mg and 3 mg ISIS 666853 achieved 8 week FOB scores of 0.0 and 0.0 (respectively) whereas ISIS 333611 achieved FOB scores of 0.0 and 1.2 (respectively).
For example, as provided in Example 17 (hereinbelow), ISIS 666853 achieved an ED50 of 136 and 188 in lumbar tissue and cortex tissue (respectively) whereas ISIS 333611 achieved an ED50 of 401 and 786 in lumbar tissue and cortex tissue (respectively) in SOD-1 transgenic mice when treated with an intracerebral ventricular bolus of 10, 30, 100, 300, or 700 µg of oligonucleotide.
For example, as provided in Example 18 (hereinbelow), ISIS 666853 achieved a FOB score of 1.25 whereas ISIS 333611 achieved a FOB score of 6.5 in C57bl6 mice after 3 hours when treated with 700 µg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666853 treated mice as compared to ISIS 333611 treated mice.
For example, as provided in Example 12 (hereinbelow), ISIS 666859 achieved 79% inhibition in lumbar spinal cord and 64% inhibition in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
For example, as provided in Example 14 (hereinbelow), ISIS 666859 achieved a FOB score of 1 whereas ISIS 333611 achieved a FOB score of 4 in Sprague-Dawley rats after 3 hours when treated with 3 mg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666859 treated rats as compared to ISIS 333611 treated rats.
For example, as provided in Example 15 (hereinbelow), ISIS 666859 achieved an ED50 of 74.0 and 358.8 in lumbar tissue and cervical tissue (respectively) in SOD-1 transgenic rats when treated intrathecally with 10, 30, 100, 300, or 3000 µg of oligonucleotide. ED50 in lumbar and cervical tissues could not be calculated in ISIS 333611 treated transgenic rats because the highest concentration tested (3000 µg) filed to inhibit human SOD-1 mRNA greater than 55-65%.
For example, as provided in Example 16 (hereinbelow), at doses of 1 mg and 3 mg ISIS 666859 achieved 3 hour FOB scores of 0.0 and 2.1 (respectively) whereas ISIS 333611 achieved FOB scores of 3.0 and 4.9 (respectively). At doses of 1 mg and 3 mg ISIS 666859 achieved 8 week FOB scores of 0.0 and 0.3 (respectively) whereas ISIS 333611 achieved FOB scores of 0.0 and 1.2 (respectively).
For example, as provided in Example 17 (hereinbelow), ISIS 666859 achieved an ED50 of 106 and 206 in lumbar tissue and cortex tissue (respectively) whereas ISIS 333611 achieved an ED50 of 401 and 786 in lumbar tissue and cortex tissue (respectively) in SOD-1 transgenic mice when treated with an intracerebral ventricular bolus of 10, 30, 100, 300, or 700 µg of oligonucleotide.
For example, as provided in Example 18 (hereinbelow), ISIS 666859 achieved a FOB score of 1.75 whereas ISIS 333611 achieved a FOB score of 6.5 in C57bl6 mice after 3 hours when treated with 700 µg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666859 treated mice as compared to ISIS 333611 treated mice.
For example, as provided in Example 12 (hereinbelow), ISIS 666919 achieved 76% inhibition in lumbar spinal cord and 68% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
For example, as provided in Example 14 (hereinbelow), ISIS 666919 achieved a FOB score of 2 whereas ISIS 333611 achieved a FOB score of 4 in Sprague-Dawley rats after 3 hours when treated with 3 mg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666919 treated rats as compared to ISIS 333611 treated rats.
For example, as provided in Example 15 (hereinbelow), ISIS 666919 achieved an ED50 of 104.1 and 613.5 in lumbar tissue and cervical tissue (respectively) in SOD-1 transgenic rats when treated intrathecally with 10, 30, 100, 300, or 3000 µg of oligonucleotide. ED50 in lumbar and cervical tissues could not be calculated in ISIS 333611 treated transgenic rats because the highest concentration tested (3000 µg) filed to inhibit human SOD-1 mRNA greater than 55-65%.
For example, as provided in Example 16 (hereinbelow), at doses of 1 mg and 3 mg ISIS 666919 achieved 3 hour FOB scores of 1.3 and 3.5 (respectively) whereas ISIS 333611 achieved FOB scores of 3.0 and 4.9 (respectively). At doses of 1 mg and 3 mg ISIS 666919 achieved 8 week FOB scores of 0.0 and 0.1 (respectively) whereas ISIS 333611 achieved FOB scores of 0.0 and 1.2 (respectively).
For example, as provided in Example 17 (hereinbelow), ISIS 666919 achieved an ED50 of 168 in lumbar tissue whereas ISIS 333611 achieved an ED50 of 401 in lumbar tissue in SOD-1 transgenic mice when treated with an intracerebral ventricular bolus of 10, 30, 100, 300, or 700 µg of oligonucleotide.
For example, as provided in Example 18 (hereinbelow), ISIS 666919 achieved a FOB score of 0.0 whereas ISIS 333611 achieved a FOB score of 6.5 in C57bl6 mice after 3 hours when treated with 700 µg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666919 treated mice as compared to ISIS 333611 treated mice.
For example, as provided in Example 12 (hereinbelow), ISIS 66621 achieved 71% inhibition in lumbar spinal cord and 65% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
For example, as provided in Example 14 (hereinbelow), ISIS 666921 achieved a FOB score of 2 whereas ISIS 333611 achieved a FOB score of 4 in Sprague-Dawley rats after 3 hours when treated with 3 mg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666919 treated rats as compared to ISIS 333611 treated rats.
For example, as provided in Example 12 (hereinbelow), ISIS 666922 achieved 67% inhibition in lumbar spinal cord and 62% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
For example, as provided in Example 14 (hereinbelow), ISIS 666922 achieved a FOB score of 3 whereas ISIS 333611 achieved a FOB score of 4 in Sprague-Dawley rats after 3 hours when treated with 3 mg of oligonucleotide. Microglial marker (IBA1) levels and astrocytic marker (GFAP) levels were also reduced in ISIS 666919 treated rats as compared to ISIS 333611 treated rats.
For example, as provided in Example 12 (hereinbelow), ISIS 666869 achieved 82% inhibition in lumbar spinal cord and 81% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
For example, as provided in Example 12 (hereinbelow), ISIS 666870 achieved 76% inhibition in lumbar spinal cord and 68% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
For example, as provided in Example 15 (hereinbelow), ISIS 666870 achieved an ED50 of 139.4 and 1111 in lumbar tissue and cervical tissue (respectively) in SOD-1 transgenic rats when treated intrathecally with 10, 30, 100, 300, or 3000 µg of oligonucleotide. ED50 in lumbar and cervical tissues could not be calculated in ISIS 333611 treated transgenic rats because the highest concentration tested (3000 µg) filed to inhibit human SOD-1 mRNA greater than 55-65%.
For example, as provided in Example 17 (hereinbelow), ISIS 666870 achieved an ED50 of 148 and 409 in lumbar tissue and cortex tissue (respectively) whereas ISIS 333611 achieved an ED50 of 401 and 786 in lumbar tissue and cortex tissue (respectively) in SOD-1 transgenic mice when treated with an intracerebral ventricular bolus of 10, 30, 100, 300, or 700 µg of oligonucleotide.
For example, as provided in Example 18 (hereinbelow), ISIS 666870 achieved a FOB score of 4.75 whereas ISIS 333611 achieved a FOB score of 6.5 in C57bl6 mice after 3 hours when treated with 700 µg of oligonucleotide.
For example, as provided in Example 12 (hereinbelow), ISIS 666867 achieved 59% inhibition in lumbar spinal cord and 48% in cervical spinal cord of an SOD-1 transgenic rat model when dosed with 30 µL of 16.67 mg/ml solution of oligonucleotide diluted in PBS (500 µg final dose), whereas ISIS 333611 achieved 51% inhibition in lumbar spinal cord and 47% inhibition in cervical spinal cord.
In certain instances, ISIS 666853 is characterized as a 5-10-5 MOE gapmer, having a sequence of (from 5' to 3') CAGGATACATTTCTACAGCT (incorporated herein as SEQ ID NO: 725), wherein each of nucleosides 1-5 and 16-20 are 2'-O-methoxyethylribose modified nucleosides, and each of nucleosides 6-15 are 2'-deoxynucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 4 to 5, 16 to 17, and 18 to 19 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 3 to 4, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 13 to 14, 14 to 15, 15 to 16, 17 to 18, and 19 to 20 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666853 is described by the following chemical notation: mCes Aeo Ges Geo Aes Tds Ads mCds Ads Tds Tds Tds mCds Tds Ads mCeo Aes Geo mCes Te; wherein,
- A =
- an adenine,
- mC =
- a 5-methylcytosine
- G =
- a guanine,
- T =
- a thymine,
- e =
- a 2'-O-methoxyethylribose modified sugar,
- d =
- a 2'-deoxyribose sugar,
- s =
- a phosphorothioate internucleoside linkage, and
- o =
- a phosphodiester internucleoside linkage.
In certain instances, ISIS 666853 is described by the following chemical structure:
In certain instances, ISIS 666859 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') TTAATGTTTATCAGGAT (incorporated herein as SEQ ID NO: 1351), consisting of seventeen nucleosides, wherein each of nucleosides 1-4 and 15-17 are 2'-O-methoxyethylribose nucleosides, wherein each of nucleosides 13 and 14 are cEt modified nucleosides, wherein each of nucleosides 5-12 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 13 to 14, 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 4 to 5, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5 -methylcytosine.
In certain instances, ISIS 666859 is described by the following chemical notation: Tes Teo Aeo Aes Tds Gds Tds Tds Tds Ads Tds mCds Ako Gko Ges Aes Te; wherein,
- A =
- an adenine,
- mC =
- a 5-methylcytosine
- G =
- a guanine,
- T =
- a thymine,
- e =
- a 2'-O-methoxyethylribose modified sugar,
- k =
- a cEt modified sugar,
- d =
- a 2'-deoxyribose sugar,
- s =
- a phosphorothioate internucleoside linkage, and
- o =
- a phosphodiester internucleoside linkage.
In certain instances, ISIS 666859 is described by the following chemical structure:
In certain instances, ISIS 666919 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') GGATACATTTCTACAGC (incorporated herein as SEQ ID NO: 1342), consisting of seventeen nucleosides, wherein each of nucleosides 1-4 and 16-17 are 2'-O-methoxyethylribose modified nucleosides, wherein each of nucleosides 14 and 15 are cEt modified nucleosides, wherein each of nucleosides 5-13 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 4 to 5, and 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 13 to 14, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666919 is described by the following chemical notation: Ges Geo Aeo Teo Ads mCds Ads Tds Tds Tds mCds Tds Ads mCko Aks Ges mCe; wherein,
- A =
- an adenine,
- mC =
- a 5-methylcytosine
- G =
- a guanine,
- T =
- a thymine,
- e =
- a 2'-O-methoxyethylribose modified sugar,
- k =
- a cEt modified sugar,
- d =
- a 2'-deoxyribose sugar,
- s =
- a phosphorothioate internucleoside linkage, and
- o =
- a phosphodiester internucleoside linkage.
In certain instances, ISIS 666919 is described by the following chemical structure:
In certain instances, ISIS 666921 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') GGATACATTTCTACAGC (incorporated herein as SEQ ID NO: 1342), consisting of seventeen nucleosides, wherein each of nucleosides 1-5 and 16-17 are 2'-O-methoxyethylribose modified nucleosides, wherein each of nucleosides 14-15 are cEt modified nucleosides, wherein each of nucleosides 6-13 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 4 to 5, and 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 13 to 14, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666921 is described by the following chemical notation: Ges Geo Aeo Teo Aes mCds Ads Tds Tds Tds mCds Tds Ads mCko Aks Ges mCe; wherein,
- A =
- an adenine,
- mC =
- a 5-methylcytosine
- G =
- a guanine,
- T =
- a thymine,
- e =
- a 2'-O-methoxyethylribose modified sugar,
- k =
- a cEt modified sugar,
- d =
- a 2'-deoxyribose sugar,
- s =
- a phosphorothioate internucleoside linkage, and
- o =
- a phosphodiester internucleoside linkage.
In certain instances, ISIS 666921 is described by the following chemical structure:
In certain instances, ISIS 666922 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') GGATACATTTCTACAGC (incorporated herein as SEQ ID NO: 1342), consisting of seventeen nucleosides, wherein each of nucleosides 1-4 and 15-17 are 2'-O-methoxyethylribose modified nucleosides, wherein each of nucleosides 5 and 14 are cEt modified nucleosides, wherein each of nucleosides 6-13 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 4 to 5, and 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 13 to 14, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666922 is described by the following chemical notation: Ges Geo Aeo Teo Aks mCds Ads Tds Tds Tds mCds Tds Ads mCko Aes Ges mCe; wherein,
- A =
- an adenine,
- mC =
- a 5-methylcytosine
- G =
- a guanine,
- T =
- a thymine,
- e =
- a 2'-O-methoxyethylribose modified sugar,
- k =
- a cEt modified sugar,
- d =
- a 2'-deoxyribose sugar,
- s =
- a phosphorothioate internucleoside linkage, and
- o =
- a phosphodiester internucleoside linkage.
In certain instances, ISIS 666922 is described by the following chemical structure:
In certain instances, ISIS 666869 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') AGTGTTTAATGTTTATC (incorporated herein as SEQ ID NO: 1173), consisting of seventeen nucleosides, wherein each of nucleosides 1, 3, 14, and 16-17 are 2'-O-methoxyethylribose modified nucleosides, wherein each of nucleosides 2, 4, 13, and 15 are cEt modified nucleosides, wherein each of nucleosides 5-12 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 13 to 14, and 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 4 to 5, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666869 is described by the following chemical notation: Aes Gko Teo Gks Tds Tds Tds Ads Ads Tds Gds Tds Tko Teo Aks Tes mCe; wherein,
- A =
- an adenine,
- mC =
- a 5-methylcytosine
- G =
- a guanine,
- T =
- a thymine,
- e =
- a 2'-O-methoxyethylribose modified sugar,
- k =
- a cEt modified sugar,
- d =
- a 2'-deoxyribose sugar,
- s =
- a phosphorothioate internucleoside linkage, and
- o =
- a phosphodiester internucleoside linkage.
In certain instances, ISIS 666869 is described by the following chemical structure:
In certain instances, ISIS 666870 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') AGTGTTTAATGTTTATC (incorporated herein as SEQ ID NO: 1173), consisting of seventeen nucleosides, wherein each of nucleosides 1, 3, 13-17 are 2'-O-methoxyethylribose modified nucleosides, wherein each of nucleosides 2 and 4 are cEt modified nucleosides, wherein each of nucleosides 5-12 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 13 to 14, and 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 4 to 5, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666870 is described by the following chemical notation: Aes Gko Teo Gks Tds Tds Tds Ads Ads Tds Gds Tds Teo Teo Aes Tes mCe; wherein,
- A =
- an adenine,
- mC =
- a 5-methylcytosine
- G =
- a guanine,
- T =
- a thymine,
- e =
- a 2'-O-methoxyethylribose modified sugar,
- k =
- a cEt modified sugar,
- d =
- a 2'-deoxyribose sugar,
- s =
- a phosphorothioate internucleoside linkage, and
- o =
- a phosphodiester internucleoside linkage.
In certain instances, ISIS 666870 is described by the following chemical structure:
In certain instances, ISIS 666867 is characterized as a modified oligonucleotide having the nucleobase sequence (from 5' to 3') AGTGTTTAATGTTTATC (incorporated herein as SEQ ID NO: 1173), consisting of seventeen nucleosides, wherein each of nucleosides 1-2 and 13-17 are 2'-O-methoxyethylribose modified nucleosides, wherein each of nucleosides 3 and 4 are cEt modified nucleosides, wherein each of nucleosides 5-12 are 2'-deoxyribonucleosides, wherein the internucleoside linkages between nucleosides 2 to 3, 3 to 4, 13 to 14, and 14 to 15 are phosphodiester linkages and the internucleoside linkages between nucleosides 1 to 2, 4 to 5, 5 to 6, 6 to 7, 7 to 8, 8 to 9, 9 to 10, 10 to 11, 11 to 12, 12 to 13, 15 to 16, and 16 to 17 are phosphorothioate linkages, and wherein each cytosine is a 5-methylcytosine.
In certain instances, ISIS 666867 is described by the following chemical notation: Aes Geo Tko Gks Tds Tds Tds Ads Ads Tds Gds Tds Teo Teo Aes Tes mCe; wherein,
- A =
- an adenine,
- mC =
- a 5-methylcytosine
- G =
- a guanine,
- T =
- a thymine,
- e =
- a 2'-O-methoxyethylribose modified sugar,
- k =
- a cEt modified sugar,
- d =
- a 2'-deoxyribose sugar,
- s =
- a phosphorothioate internucleoside linkage, and
- o =
- a phosphodiester internucleoside linkage.
In certain instances, ISIS 666867 is described by the following chemical structure:
While certain compounds, compositions, and methods described herein have been described with specificity in accordance with certain instances, the following examples serve only to illustrate the compounds described herein and are not intended to limit the same.
Modified oligonucleotides were designed targeting a superoxide dismutase 1, soluble (SOD-1) nucleic acid and were tested for their effects on SOD-1 mRNA in vitro. ISIS 146144, ISIS 146145, ISIS 150437, ISIS 150441, ISIS 150443, ISIS 150444, ISIS 150445, ISIS 150446, ISIS 150447, ISIS 150448, ISIS 150449, ISIS 150452, ISIS 150454, ISIS 150458, ISIS 150460, ISIS 150462-150467, ISIS 150470, ISIS 150472, ISIS 150474, ISIS 150475, ISIS 150476, ISIS 150479-150483, ISIS 150488, ISIS 150489, ISIS 150490, ISIS 150491-150493, ISIS 150495-150498, ISIS 150511, ISIS 333605, ISIS 333606, ISIS 333609-333617, ISIS 333619, ISIS 333620-333636, ISIS 333638, and ISIS 333640, previously disclosed in WO 2005/040180, were also included in this assay. ISIS 333611, previously disclosed in WO 2005/040180 , was also designated as a benchmark or comparator oligonucleotide. ISIS 333611 was recently tested in human clinical trials. See, MILLER et al., "An antisense oligonucleotide against SOD1 delivered intrathecally for patients with SOD1 familial amyotrophic lateral sclerosis: a phase 1, randomised, first-in-man study" Lancet Neurol. (2013) 12(5): 435-442.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cultured HepG2 cells at a density of 20,000 cells per well were transfected using electroporation with 7,000 nM modified oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR.
Human primer probe set RTS3898 (forward sequence CTCTCAGGAGACCATTGCATCA, designated herein as SEQ ID NO: 11; reverse sequence TCCTGTCTTTGTACTTTCTTCATTTCC; designated herein as SEQ ID NO: 12; probe sequence CCGCACACTGGTGGTCCATGAAAA, designated herein as SEQ ID NO: 13) was used to measure mRNA levels. In cases where the oligonucleotide overlapped the amplicon of the primer probe set, an alternative primer probe set, HTS90 (forward sequence CGTGGCCTAGCGAGTTATGG, designated herein as SEQ ID NO: 14; reverse sequence GAAATTGATGATGCCCTGCA; designated herein as SEQ ID NO: 15; probe sequence ACGAAGGCCGTGTGCGTGCTGX, designated herein as SEQ ID NO: 16), was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. 'n.d.' indicates that inhibition levels were not measured using the particular primer probe set.
The newly designed modified oligonucleotides in the Tables below were designed as 5-10-5 MOE gapmers. The 5-10-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of ten 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five nucleosides each. Each nucleoside in the 5' wing segment and each nucleoside in the 3' wing segment has a 2'-MOE modification. The internucleoside linkages throughout each gapmer are phosphorothioate linkages. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). 'n/a' indicates that the modified oligonucleotide does not target that particular gene sequence with 100% complementarity.
Table 1
Table 2
Table 3
Table 4
Table 5
Table 6
Table 7
Table 8
Table 9
Table 10
| Percent Inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2 | |||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | % inhibition with RTS3898 | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 590065 | 1 | 20 | CGCCCACTCTGGCCCCAAAC | 7 | 807 | 826 | 118 |
| 590066 | 35 | 54 | CCGCGACTACTTTATAGGCC | 5 | 841 | 860 | 119 |
| 333611 | 167 | 186 | CCGTCGCCCTTCAGCACGCA | 85 | 973 | 992 | 21 |
| 590067 | 202 | 221 | CCTTCTGCTCGAAATTGATG | 74 | 1008 | 1027 | 120 |
| 590068 | 203 | 222 | TCCTTCTGCTCGAAATTGAT | 58 | n/a | n/a | 121 |
| 590069 | 204 | 223 | TTCCTTCTGCTCGAAATTGA | 50 | n/a | n/a | 122 |
| 590070 | 205 | 224 | TTTCCTTCTGCTCGAAATTG | 47 | n/a | n/a | 123 |
| 590071 | 206 | 225 | CTTTCCTTCTGCTCGAAATT | 31 | n/a | n/a | 124 |
| 590072 | 207 | 226 | ACTTTCCTTCTGCTCGAAAT | 42 | n/a | n/a | 125 |
| 590073 | 208 | 227 | TACTTTCCTTCTGCTCGAAA | 38 | n/a | n/a | 126 |
| 590074 | 209 | 228 | TTACTTTCCTTCTGCTCGAA | 33 | n/a | n/a | 127 |
| 590075 | 210 | 229 | ATTACTTTCCTTCTGCTCGA | 39 | n/a | n/a | 128 |
| 590076 | 211 | 230 | CATTACTTTCCTTCTGCTCG | 28 | n/a | n/a | 129 |
| 590077 | 212 | 231 | CCATTACTTTCCTTCTGCTC | 58 | n/a | n/a | 130 |
| 590078 | 213 | 232 | TCCATTACTTTCCTTCTGCT | 58 | n/a | n/a | 131 |
| 590079 | 214 | 233 | GTCCATTACTTTCCTTCTGC | 69 | n/a | n/a | 132 |
| 590080 | 215 | 234 | GGTCCATTACTTTCCTTCTG | 68 | n/a | n/a | 133 |
| 590081 | 216 | 235 | TGGTCCATTACTTTCCTTCT | 61 | n/a | n/a | 134 |
| 590082 | 217 | 236 | CTGGTCCATTACTTTCCTTC | 69 | n/a | n/a | 135 |
| 590083 | 218 | 237 | ACTGGTCCATTACTTTCCTT | 54 | 4972 | 4991 | 136 |
| 150445 | 219 | 238 | CACTGGTCCATTACTTTCCT | 84 | 4973 | 4992 | 22 |
| 590084 | 220 | 239 | TCACTGGTCCATTACTTTCC | 65 | 4974 | 4993 | 137 |
| 590085 | 221 | 240 | TTCACTGGTCCATTACTTTC | 45 | 4975 | 4994 | 138 |
| 590086 | 222 | 241 | CTTCACTGGTCCATTACTTT | 43 | 4976 | 4995 | 139 |
| 590087 | 223 | 242 | CCTTCACTGGTCCATTACTT | 67 | 4977 | 4996 | 140 |
| 590088 | 224 | 243 | ACCTTCACTGGTCCATTACT | 59 | 4978 | 4997 | 141 |
| 436841 | 225 | 244 | CACCTTCACTGGTCCATTAC | 65 | 4979 | 4998 | 142 |
| 150446 | 226 | 245 | ACACCTTCACTGGTCCATTA | 83 | 4980 | 4999 | 23 |
| 393336 | 227 | 246 | CACACCTTCACTGGTCCATT | 81 | 4981 | 5000 | 143 |
| 150447 | 228 | 247 | CCACACCTTCACTGGTCCAT | 89 | 4982 | 5001 | 24 |
| 590089 | 229 | 248 | CCCACACCTTCACTGGTCCA | 82 | 4983 | 5002 | 144 |
| 590090 | 230 | 249 | CCCCACACCTTCACTGGTCC | 89 | 4984 | 5003 | 145 |
| 590091 | 231 | 250 | TCCCCACACCTTCACTGGTC | 84 | 4985 | 5004 | 146 |
| 590092 | 232 | 251 | TTCCCCACACCTTCACTGGT | 61 | 4986 | 5005 | 147 |
| 590093 | 233 | 252 | CTTCCCCACACCTTCACTGG | 60 | 4987 | 5006 | 148 |
| 590094 | 234 | 253 | GCTTCCCCACACCTTCACTG | 78 | 4988 | 5007 | 149 |
| 590095 | 235 | 254 | TGCTTCCCCACACCTTCACT | 72 | 4989 | 5008 | 150 |
| 590096 | 236 | 255 | ATGCTTCCCCACACCTTCAC | 76 | 4990 | 5009 | 151 |
| 393337 | 237 | 256 | AATGCTTCCCCACACCTTCA | 76 | 4991 | 5010 | 152 |
| 590097 | 238 | 257 | TAATGCTTCCCCACACCTTC | 68 | 4992 | 5011 | 153 |
| 590098 | 264 | 283 | TCCATGCAGGCCTTCAGTCA | 63 | 5018 | 5037 | 154 |
| 590099 | 265 | 284 | ATCCATGCAGGCCTTCAGTC | 64 | 5019 | 5038 | 155 |
| 590100 | 266 | 285 | AATCCATGCAGGCCTTCAGT | 52 | 5020 | 5039 | 156 |
| 590101 | 267 | 286 | GAATCCATGCAGGCCTTCAG | 53 | 5021 | 5040 | 157 |
| 590102 | 268 | 287 | GGAATCCATGCAGGCCTTCA | 65 | 5022 | 5041 | 158 |
| 393339 | 269 | 288 | TGGAATCCATGCAGGCCTTC | 43 | 5023 | 5042 | 159 |
| 590103 | 270 | 289 | ATGGAATCCATGCAGGCCTT | 56 | 5024 | 5043 | 160 |
| 590104 | 271 | 290 | CATGGAATCCATGCAGGCCT | 57 | 5025 | 5044 | 161 |
| 590105 | 272 | 291 | ACATGGAATCCATGCAGGCC | 52 | 5026 | 5045 | 162 |
| 590106 | 273 | 292 | AACATGGAATCCATGCAGGC | 54 | 5027 | 5046 | 163 |
| 590107 | 274 | 293 | GAACATGGAATCCATGCAGG | 51 | 5028 | 5047 | 164 |
| 590108 | 275 | 294 | TGAACATGGAATCCATGCAG | 58 | 5029 | 5048 | 165 |
| 393340 | 276 | 295 | ATGAACATGGAATCCATGCA | 62 | 5030 | 5049 | 166 |
| 590109 | 316 | 335 | GACCTGCACTGGTACAGCCT | 69 | 7632 | 7651 | 167 |
| 436847 | 317 | 336 | GGACCTGCACTGGTACAGCC | 74 | 7633 | 7652 | 168 |
| 590110 | 318 | 337 | AGGACCTGCACTGGTACAGC | 70 | 7634 | 7653 | 169 |
| 590111 | 319 | 338 | GAGGACCTGCACTGGTACAG | 74 | 7635 | 7654 | 170 |
| 590112 | 320 | 339 | TGAGGACCTGCACTGGTACA | 68 | 7636 | 7655 | 171 |
| 590113 | 321 | 340 | GTGAGGACCTGCACTGGTAC | 80 | 7637 | 7656 | 172 |
| 393343 | 322 | 341 | AGTGAGGACCTGCACTGGTA | 79 | 7638 | 7657 | 173 |
| 590114 | 323 | 342 | AAGTGAGGACCTGCACTGGT | 65 | 7639 | 7658 | 174 |
| 590115 | 324 | 343 | AAAGTGAGGACCTGCACTGG | 48 | 7640 | 7659 | 175 |
| 590116 | 325 | 344 | TAAAGTGAGGACCTGCACTG | 51 | 7641 | 7660 | 176 |
| 436848 | 326 | 345 | TTAAAGTGAGGACCTGCACT | 59 | 7642 | 7661 | 177 |
| 590117 | 327 | 346 | ATTAAAGTGAGGACCTGCAC | 43 | 7643 | 7662 | 178 |
| 590118 | 328 | 347 | GATTAAAGTGAGGACCTGCA | 43 | 7644 | 7663 | 179 |
| 590119 | 329 | 348 | GGATTAAAGTGAGGACCTGC | 67 | 7645 | 7664 | 180 |
| 590120 | 330 | 349 | AGGATTAAAGTGAGGACCTG | 63 | 7646 | 7665 | 181 |
| 436849 | 331 | 350 | GAGGATTAAAGTGAGGACCT | 64 | 7647 | 7666 | 182 |
| 393344 | 332 | 351 | AGAGGATTAAAGTGAGGACC | 59 | 7648 | 7667 | 183 |
| 590121 | 333 | 352 | TAGAGGATTAAAGTGAGGAC | 52 | 7649 | 7668 | 184 |
| 590122 | 334 | 353 | ATAGAGGATTAAAGTGAGGA | 36 | 7650 | 7669 | 185 |
| 590123 | 335 | 354 | GATAGAGGATTAAAGTGAGG | 25 | 7651 | 7670 | 186 |
| 590124 | 336 | 355 | GGATAGAGGATTAAAGTGAG | 34 | 7652 | 7671 | 187 |
| 590125 | 337 | 356 | TGGATAGAGGATTAAAGTGA | 49 | 7653 | 7672 | 188 |
| 590126 | 338 | 357 | CTGGATAGAGGATTAAAGTG | 34 | 7654 | 7673 | 189 |
| 590127 | 339 | 358 | TCTGGATAGAGGATTAAAGT | 39 | 7655 | 7674 | 190 |
| 590128 | 360 | 379 | ATCCTTTGGCCCACCGTGTT | 60 | 7676 | 7695 | 191 |
| Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID : 1 and/or 2 | ||||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | % inhibition with RTS3898 | % inhibition with HTS90 | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | CCGTCGCCCTTCAGCACGCA | 76 | 95 | 973 | 992 | 21 |
| 393347 | 361 | 380 | CATCCTTTGGCCCACCGTGT | 70 | 72 | 7677 | 7696 | 192 |
| 590129 | 362 | 381 | TCATCCTTTGGCCCACCGTG | 66 | 68 | 7678 | 7697 | 193 |
| 590130 | 363 | 382 | TTCATCCTTTGGCCCACCGT | 53 | 55 | 7679 | 7698 | 194 |
| 590131 | 364 | 383 | CTTCATCCTTTGGCCCACCG | 52 | 50 | 7680 | 7699 | 195 |
| 590132 | 365 | 384 | TCTTCATCCTTTGGCCCACC | 61 | 64 | 7681 | 7700 | 196 |
| 590133 | 366 | 385 | CTCTTCATCCTTTGGCCCAC | 45 | 54 | 7682 | 7701 | 197 |
| 590134 | 367 | 386 | TCTCTTCATCCTTTGGCCCA | 44 | 34 | 7683 | 7702 | 198 |
| 590135 | 368 | 387 | CTCTCTTCATCCTTTGGCCC | 52 | 49 | 7684 | 7703 | 199 |
| 590136 | 369 | 388 | CCTCTCTTCATCCTTTGGCC | 48 | 47 | 7685 | 7704 | 200 |
| 590137 | 370 | 389 | GCCTCTCTTCATCCTTTGGC | 35 | 44 | n/a | n/a | 201 |
| 590138 | 371 | 390 | TGCCTCTCTTCATCCTTTGG | 52 | 45 | n/a | n/a | 202 |
| 590139 | 372 | 391 | ATGCCTCTCTTCATCCTTTG | 50 | 45 | n/a | n/a | 203 |
| 590140 | 373 | 392 | CATGCCTCTCTTCATCCTTT | 49 | 27 | n/a | n/a | 204 |
| 590141 | 374 | 393 | ACATGCCTCTCTTCATCCTT | 34 | 18 | n/a | n/a | 205 |
| 590142 | 375 | 394 | AACATGCCTCTCTTCATCCT | 38 | 35 | n/a | n/a | 206 |
| 333612 | 376 | 395 | CAACATGCCTCTCTTCATCC | 34 | 33 | n/a | n/a | 25 |
| 333613 | 377 | 396 | CCAACATGCCTCTCTTCATC | 46 | 55 | n/a | n/a | 26 |
| 333614 | 378 | 397 | TCCAACATGCCTCTCTTCAT | 42 | 48 | n/a | n/a | 27 |
| 333615 | 379 | 398 | CTCCAACATGCCTCTCTTCA | 42 | 15 | n/a | n/a | 28 |
| 333616 | 380 | 399 | TCTCCAACATGCCTCTCTTC | 35 | 44 | n/a | n/a | 29 |
| 333617 | 381 | 400 | GTCTCCAACATGCCTCTCTT | 42 | 47 | n/a | n/a | 30 |
| 590143 | 501 | 520 | TGCTTTTTCATGGACCACCA | n.d. | 65 | n/a | n/a | 207 |
| 590144 | 502 | 521 | CTGCTTTTTCATGGACCACC | n.d. | 70 | n/a | n/a | 208 |
| 590145 | 503 | 522 | TCTGCTTTTTCATGGACCAC | n.d. | 64 | n/a | n/a | 209 |
| 436860 | 504 | 523 | ATCTGCTTTTTCATGGACCA | n.d. | 65 | n/a | n/a | 210 |
| 590146 | 505 | 524 | CATCTGCTTTTTCATGGACC | n.d. | 68 | 9655 | 9674 | 211 |
| 590147 | 506 | 525 | TCATCTGCTTTTTCATGGAC | n.d. | 59 | 9656 | 9675 | 212 |
| 393359 | 507 | 526 | GTCATCTGCTTTTTCATGGA | n.d. | 56 | 9657 | 9676 | 213 |
| 590148 | 508 | 527 | AGTCATCTGCTTTTTCATGG | n.d. | 45 | 9658 | 9677 | 214 |
| 590149 | 509 | 528 | AAGTCATCTGCTTTTTCATG | n.d. | 23 | 9659 | 9678 | 215 |
| 590150 | 510 | 529 | CAAGTCATCTGCTTTTTCAT | n.d. | 43 | 9660 | 9679 | 216 |
| 590151 | 511 | 530 | CCAAGTCATCTGCTTTTTCA | n.d. | 72 | 9661 | 9680 | 217 |
| 489513 | 512 | 531 | CCCAAGTCATCTGCTTTTTC | n.d. | 73 | 9662 | 9681 | 218 |
| 590152 | 513 | 532 | GCCCAAGTCATCTGCTTTTT | n.d. | 74 | 9663 | 9682 | 219 |
| 436861 | 514 | 533 | TGCCCAAGTCATCTGCTTTT | n.d. | 75 | 9664 | 9683 | 220 |
| 590153 | 515 | 534 | TTGCCCAAGTCATCTGCTTT | n.d. | 47 | 9665 | 9684 | 221 |
| 393360 | 516 | 535 | TTTGCCCAAGTCATCTGCTT | n.d. | 57 | 9666 | 9685 | 222 |
| 590154 | 517 | 536 | CTTTGCCCAAGTCATCTGCT | n.d. | 79 | 9667 | 9686 | 223 |
| 590155 | 518 | 537 | CCTTTGCCCAAGTCATCTGC | n.d. | 67 | 9668 | 9687 | 224 |
| 590156 | 519 | 538 | ACCTTTGCCCAAGTCATCTG | n.d. | 57 | 9669 | 9688 | 225 |
| 333620 | 520 | 539 | CACCTTTGCCCAAGTCATCT | n.d. | 68 | 9670 | 9689 | 31 |
| 333621 | 521 | 540 | CCACCTTTGCCCAAGTCATC | n.d. | 72 | 9671 | 9690 | 32 |
| 333622 | 522 | 541 | TCCACCTTTGCCCAAGTCAT | n.d. | 77 | 9672 | 9691 | 33 |
| 333623 | 523 | 542 | TTCCACCTTTGCCCAAGTCA | n.d. | 73 | 9673 | 9692 | 34 |
| 333624 | 524 | 543 | TTTCCACCTTTGCCCAAGTC | n.d. | 77 | 9674 | 9693 | 35 |
| 333625 | 525 | 544 | ATTTCCACCTTTGCCCAAGT | n.d. | 79 | 9675 | 9694 | 36 |
| 333626 | 526 | 545 | CATTTCCACCTTTGCCCAAG | n.d. | 72 | 9676 | 9695 | 37 |
| 333627 | 527 | 546 | TCATTTCCACCTTTGCCCAA | n.d. | 55 | 9677 | 9696 | 38 |
| 333628 | 528 | 547 | TTCATTTCCACCTTTGCCCA | n.d. | 59 | 9678 | 9697 | 39 |
| 333629 | 529 | 548 | CTTCATTTCCACCTTTGCCC | n.d. | 73 | 9679 | 9698 | 40 |
| 333630 | 530 | 549 | TCTTCATTTCCACCTTTGCC | n.d. | 76 | 9680 | 9699 | 41 |
| 333631 | 531 | 550 | TTCTTCATTTCCACCTTTGC | n.d. | 62 | 9681 | 9700 | 42 |
| 333632 | 532 | 551 | TTTCTTCATTTCCACCTTTG | n.d. | 64 | 9682 | 9701 | 43 |
| 333633 | 533 | 552 | CTTTCTTCATTTCCACCTTT | n.d. | 69 | 9683 | 9702 | 44 |
| 333634 | 534 | 553 | ACTTTCTTCATTTCCACCTT | n.d. | 55 | 9684 | 9703 | 45 |
| 333635 | 535 | 554 | TACTTTCTTCATTTCCACCT | n.d. | 72 | 9685 | 9704 | 46 |
| 489517 | 582 | 601 | CCCAATTACACCACAAGCCA | 68 | 72 | 9732 | 9751 | 226 |
| 436863 | 583 | 602 | TCCCAATTACACCACAAGCC | 83 | 86 | 9733 | 9752 | 227 |
| 590157 | 584 | 603 | ATCCCAATTACACCACAAGC | 64 | 62 | 9734 | 9753 | 228 |
| 590158 | 585 | 604 | GATCCCAATTACACCACAAG | 51 | 61 | 9735 | 9754 | 229 |
| 590159 | 586 | 605 | CGATCCCAATTACACCACAA | 60 | 55 | 9736 | 9755 | 230 |
| 590160 | 587 | 606 | GCGATCCCAATTACACCACA | 59 | 63 | 9737 | 9756 | 231 |
| 150463 | 588 | 607 | GGCGATCCCAATTACACCAC | 78 | 79 | 9738 | 9757 | 47 |
| 393363 | 589 | 608 | GGGCGATCCCAATTACACCA | 65 | 65 | 9739 | 9758 | 232 |
| 590161 | 590 | 609 | TGGGCGATCCCAATTACACC | 56 | 60 | 9740 | 9759 | 233 |
| 590162 | 591 | 610 | TTGGGCGATCCCAATTACAC | 48 | 51 | 9741 | 9760 | 234 |
| 489518 | 592 | 611 | ATTGGGCGATCCCAATTACA | 51 | 59 | 9742 | 9761 | 235 |
| 436864 | 593 | 612 | TATTGGGCGATCCCAATTAC | 39 | 41 | 9743 | 9762 | 236 |
| 590163 | 594 | 613 | TTATTGGGCGATCCCAATTA | 35 | 34 | 9744 | 9763 | 237 |
| 590164 | 595 | 614 | TTTATTGGGCGATCCCAATT | 42 | 44 | 9745 | 9764 | 238 |
| 590165 | 596 | 615 | GTTTATTGGGCGATCCCAAT | 58 | 61 | 9746 | 9765 | 239 |
| 393364 | 597 | 616 | TGTTTATTGGGCGATCCCAA | 60 | 69 | 9747 | 9766 | 240 |
| 590166 | 598 | 617 | ATGTTTATTGGGCGATCCCA | 51 | 54 | 9748 | 9767 | 241 |
| 590167 | 599 | 618 | AATGTTTATTGGGCGATCCC | 48 | 45 | 9749 | 9768 | 242 |
| 590168 | 600 | 619 | GAATGTTTATTGGGCGATCC | 60 | 65 | 9750 | 9769 | 243 |
| 150464 | 601 | 620 | GGAATGTTTATTGGGCGATC | 58 | 63 | 9751 | 9770 | 48 |
| 393365 | 607 | 626 | TCCAAGGGAATGTTTATTGG | 50 | 58 | 9757 | 9776 | 244 |
| Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2 | |||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | % inhibition with RTS3898 | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | CCGTCGCCCTTCAGCACGCA | 80 | 973 | 992 | 21 |
| 590169 | 608 | 627 | ATCCAAGGGAATGTTTATTG | 63 | 9758 | 9777 | 245 |
| 590170 | 609 | 628 | CATCCAAGGGAATGTTTATT | 53 | 9759 | 9778 | 246 |
| 590171 | 610 | 629 | ACATCCAAGGGAATGTTTAT | 49 | 9760 | 9779 | 247 |
| 590172 | 611 | 630 | TACATCCAAGGGAATGTTTA | 56 | 9761 | 9780 | 248 |
| 489519 | 612 | 631 | CTACATCCAAGGGAATGTTT | 60 | 9762 | 9781 | 249 |
| 590173 | 613 | 632 | ACTACATCCAAGGGAATGTT | 61 | 9763 | 9782 | 250 |
| 590174 | 614 | 633 | GACTACATCCAAGGGAATGT | 65 | 9764 | 9783 | 251 |
| 393366 | 615 | 634 | AGACTACATCCAAGGGAATG | 58 | 9765 | 9784 | 252 |
| 590175 | 616 | 635 | CAGACTACATCCAAGGGAAT | 50 | 9766 | 9785 | 253 |
| 436865 | 617 | 636 | TCAGACTACATCCAAGGGAA | 69 | 9767 | 9786 | 254 |
| 590176 | 618 | 637 | CTCAGACTACATCCAAGGGA | 78 | 9768 | 9787 | 255 |
| 150465 | 619 | 638 | CCTCAGACTACATCCAAGGG | 91 | 9769 | 9788 | 49 |
| 590177 | 620 | 639 | GCCTCAGACTACATCCAAGG | 90 | 9770 | 9789 | 256 |
| 590178 | 621 | 640 | GGCCTCAGACTACATCCAAG | 92 | 9771 | 9790 | 257 |
| 489520 | 622 | 641 | GGGCCTCAGACTACATCCAA | 88 | 9772 | 9791 | 258 |
| 590179 | 643 | 662 | CAGGATAACAGATGAGTTAA | 79 | 9793 | 9812 | 259 |
| 590180 | 644 | 663 | GCAGGATAACAGATGAGTTA | 83 | 9794 | 9813 | 260 |
| 590181 | 645 | 664 | AGCAGGATAACAGATGAGTT | 81 | 9795 | 9814 | 261 |
| 590182 | 646 | 665 | TAGCAGGATAACAGATGAGT | 68 | 9796 | 9815 | 262 |
| 590183 | 647 | 666 | CTAGCAGGATAACAGATGAG | 74 | 9797 | 9816 | 263 |
| 590184 | 648 | 667 | GCTAGCAGGATAACAGATGA | 70 | 9798 | 9817 | 264 |
| 393370 | 649 | 668 | AGCTAGCAGGATAACAGATG | 61 | 9799 | 9818 | 265 |
| 590185 | 650 | 669 | CAGCTAGCAGGATAACAGAT | 78 | 9800 | 9819 | 266 |
| 590186 | 651 | 670 | ACAGCTAGCAGGATAACAGA | 72 | 9801 | 9820 | 267 |
| 489522 | 652 | 671 | TACAGCTAGCAGGATAACAG | 78 | 9802 | 9821 | 268 |
| 590187 | 653 | 672 | CTACAGCTAGCAGGATAACA | 88 | 9803 | 9822 | 269 |
| 378879 | 654 | 673 | TCTACAGCTAGCAGGATAAC | 86 | 9804 | 9823 | 270 |
| 590188 | 655 | 674 | TTCTACAGCTAGCAGGATAA | 85 | 9805 | 9824 | 271 |
| 393371 | 656 | 675 | TTTCTACAGCTAGCAGGATA | 84 | 9806 | 9825 | 272 |
| 436868 | 657 | 676 | ATTTCTACAGCTAGCAGGAT | 81 | 9807 | 9826 | 273 |
| 590189 | 658 | 677 | CATTTCTACAGCTAGCAGGA | 87 | 9808 | 9827 | 274 |
| 590190 | 659 | 678 | ACATTTCTACAGCTAGCAGG | 92 | 9809 | 9828 | 275 |
| 590191 | 660 | 679 | TACATTTCTACAGCTAGCAG | 88 | 9810 | 9829 | 276 |
| 590192 | 661 | 680 | ATACATTTCTACAGCTAGCA | 88 | 9811 | 9830 | 277 |
| 489523 | 662 | 681 | GATACATTTCTACAGCTAGC | 93 | 9812 | 9831 | 278 |
| 590193 | 683 | 702 | ACAGTGTTTAATGTTTATCA | 74 | 9833 | 9852 | 279 |
| 590194 | 684 | 703 | TACAGTGTTTAATGTTTATC | 64 | 9834 | 9853 | 280 |
| 590195 | 685 | 704 | TTACAGTGTTTAATGTTTAT | 56 | 9835 | 9854 | 281 |
| 590196 | 686 | 705 | ATTACAGTGTTTAATGTTTA | 50 | 9836 | 9855 | 282 |
| 590197 | 687 | 706 | GATTACAGTGTTTAATGTTT | 74 | 9837 | 9856 | 283 |
| 590198 | 688 | 707 | AGATTACAGTGTTTAATGTT | 37 | 9838 | 9857 | 284 |
| 590199 | 689 | 708 | AAGATTACAGTGTTTAATGT | 58 | 9839 | 9858 | 285 |
| 393375 | 690 | 709 | TAAGATTACAGTGTTTAATG | 58 | 9840 | 9859 | 286 |
| 590200 | 691 | 710 | TTAAGATTACAGTGTTTAAT | 46 | 9841 | 9860 | 287 |
| 436876 | 772 | 791 | CAAATCTTCCAAGTGATCAT | 36 | 9922 | 9941 | 288 |
| 590201 | 773 | 792 | ACAAATCTTCCAAGTGATCA | 33 | 9923 | 9942 | 289 |
| 590202 | 774 | 793 | TACAAATCTTCCAAGTGATC | 34 | 9924 | 9943 | 290 |
| 150474 | 775 | 794 | ATACAAATCTTCCAAGTGAT | 47 | 9925 | 9944 | 50 |
| 590203 | 776 | 795 | TATACAAATCTTCCAAGTGA | 29 | 9926 | 9945 | 291 |
| 393382 | 777 | 796 | CTATACAAATCTTCCAAGTG | 41 | 9927 | 9946 | 292 |
| 436877 | 778 | 797 | ACTATACAAATCTTCCAAGT | 45 | 9928 | 9947 | 293 |
| 590204 | 779 | 798 | AACTATACAAATCTTCCAAG | 27 | 9929 | 9948 | 294 |
| 590205 | 780 | 799 | AAACTATACAAATCTTCCAA | 33 | 9930 | 9949 | 295 |
| 590206 | 781 | 800 | AAAACTATACAAATCTTCCA | 35 | 9931 | 9950 | 296 |
| 489533 | 782 | 801 | TAAAACTATACAAATCTTCC | 26 | 9932 | 9951 | 297 |
| 590207 | 783 | 802 | ATAAAACTATACAAATCTTC | 19 | 9933 | 9952 | 298 |
| 590208 | 784 | 803 | TATAAAACTATACAAATCTT | 2 | 9934 | 9953 | 299 |
| 590209 | 785 | 804 | TTATAAAACTATACAAATCT | 7 | 9935 | 9954 | 300 |
| 590210 | 786 | 805 | TTTATAAAACTATACAAATC | 0 | 9936 | 9955 | 301 |
| 590211 | 787 | 806 | TTTTATAAAACTATACAAAT | 4 | 9937 | 9956 | 302 |
| 590212 | 788 | 807 | GTTTTATAAAACTATACAAA | 5 | 9938 | 9957 | 303 |
| 590213 | 789 | 808 | AGTTTTATAAAACTATACAA | 3 | 9939 | 9958 | 304 |
| 436878 | 790 | 809 | GAGTTTTATAAAACTATACA | 7 | 9940 | 9959 | 305 |
| 150475 | 791 | 810 | TGAGTTTTATAAAACTATAC | 28 | 9941 | 9960 | 51 |
| 489536 | 812 | 831 | CATTGAAACAGACATTTTAA | 28 | 9962 | 9981 | 306 |
| 150479 | 813 | 832 | TCATTGAAACAGACATTTTA | 36 | 9963 | 9982 | 52 |
| 393385 | 814 | 833 | GTCATTGAAACAGACATTTT | 50 | 9964 | 9983 | 307 |
| 590214 | 815 | 834 | GGTCATTGAAACAGACATTT | 45 | 9965 | 9984 | 308 |
| 590215 | 816 | 835 | AGGTCATTGAAACAGACATT | 47 | 9966 | 9985 | 309 |
| 590216 | 817 | 836 | CAGGTCATTGAAACAGACAT | 39 | 9967 | 9986 | 310 |
| 590217 | 818 | 837 | ACAGGTCATTGAAACAGACA | 44 | 9968 | 9987 | 311 |
| 590218 | 819 | 838 | TACAGGTCATTGAAACAGAC | 42 | 9969 | 9988 | 312 |
| 150480 | 820 | 839 | ATACAGGTCATTGAAACAGA | 46 | 9970 | 9989 | 53 |
| 393386 | 821 | 840 | AATACAGGTCATTGAAACAG | 36 | 9971 | 9990 | 313 |
| 489537 | 822 | 841 | AAATACAGGTCATTGAAACA | 12 | 9972 | 9991 | 314 |
| 590219 | 823 | 842 | AAAATACAGGTCATTGAAAC | 16 | 9973 | 9992 | 315 |
| 590220 | 824 | 843 | CAAAATACAGGTCATTGAAA | 21 | 9974 | 9993 | 316 |
| Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2 | |||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | % inhibition with RTS3898 | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 590251 | n/a | n/a | CCTTGCCTTCTGCTCGAAAT | 57 | 1013 | 1032 | 317 |
| 590252 | n/a | n/a | AATAAAGTTGACCTCTTTTT | 45 | 5479 | 5498 | 318 |
| 590253 | n/a | n/a | CTCTGATATAAAAATCTTGT | 54 | 8142 | 8161 | 319 |
| 590254 | n/a | n/a | GCCCCGCGGCGGCCTCGGTC | 38 | 1238 | 1257 | 320 |
| 590255 | n/a | n/a | GCTATCGCCATTATTACAAG | 38 | 7722 | 7741 | 321 |
| 590256 | n/a | n/a | CTCAAATGTGAAAGTTGTCC | 57 | 3414 | 3433 | 322 |
| 590257 | n/a | n/a | GTTCTATATTCAATAAATGC | 37 | 7925 | 7944 | 323 |
| 590258 | n/a | n/a | AATTAAAGTTCCCAAATACA | 0 | 7578 | 7597 | 324 |
| 590259 | n/a | n/a | GATCATTACAAAAGTTAAGA | 17 | 6150 | 6169 | 325 |
| 590260 | n/a | n/a | CCTTCTCTGCCCTTGCAGCC | 55 | 1685 | 1704 | 326 |
| 590261 | n/a | n/a | ACCCAAATAACTATGTTGTA | n.d. | 9394 | 9413 | 327 |
| 590262 | n/a | n/a | CCAGGTTTTAAACTTAACAA | n.d. | 8890 | 8909 | 328 |
| 590263 | n/a | n/a | ATCTCAGGACTAAAATAAAC | 44 | 3663 | 3682 | 329 |
| 590264 | n/a | n/a | AAATAACTATGTTGTAGACC | n.d. | 9390 | 9409 | 330 |
| 590265 | n/a | n/a | AAGAACCTTTTCCAGAAAAT | 37 | 2449 | 2468 | 331 |
| 590266 | n/a | n/a | GGAACAGAAACAAGTCTATG | 25 | 7458 | 7477 | 332 |
| 590267 | n/a | n/a | AGAAAGCTATCGCCATTATT | 27 | 7727 | 7746 | 333 |
| 590268 | n/a | n/a | TTCCCAAATACATTCTAAAA | 7 | 7570 | 7589 | 334 |
| 590269 | n/a | n/a | AACTGCTCTAGGCCTGTGTC | 53 | 4787 | 4806 | 335 |
| 590270 | n/a | n/a | AAATGGATCAAATCTGATCA | 31 | 6595 | 6614 | 336 |
| 590271 | n/a | n/a | GTAGGTGCACATCAAAATCA | 58 | 1928 | 1947 | 337 |
| 590272 | n/a | n/a | TCTGATATAAAAATCTTGTC | 28 | 8141 | 8160 | 338 |
| 590273 | n/a | n/a | ACCATATGAACTCCAGAAAG | 45 | 7741 | 7760 | 339 |
| 590274 | n/a | n/a | AACATCAAGGTAGTTCATGA | 10 | 8379 | 8398 | 340 |
| 590275 | n/a | n/a | GCAATTACAGAAATGGATCA | 42 | 6605 | 6624 | 341 |
| 590276 | n/a | n/a | TTTTAAGCATATTCCAAAGT | 45 | 6331 | 6350 | 342 |
| 590277 | n/a | n/a | TCAACCCCCAGCTCAAACAC | 26 | 6174 | 6193 | 343 |
| 590278 | n/a | n/a | AGAAAAATAACATTAATCCT | n.d. | 9541 | 9560 | 344 |
| 590279 | n/a | n/a | AAGATTTTAAACACGGAATA | 31 | 3085 | 3104 | 345 |
| 146145 | 165 | 184 | GTCGCCCTTCAGCACGCACA | 82 | 971 | 990 | 54 |
| 333611 | 167 | 186 | CCGTCGCCCTTCAGCACGCA | 81 | 973 | 992 | 21 |
| 590250 | 399 | 418 | AGCAGTCACATTGCCCAAGT | 75 | 8454 | 8473 | 346 |
| 489525 | 682 | 701 | CAGTGTTTAATGTTTATCAG | 69 | 9832 | 9851 | 347 |
| 436879 | 825 | 844 | GCAAAATACAGGTCATTGAA | 49 | 9975 | 9994 | 348 |
| 590221 | 826 | 845 | GGCAAAATACAGGTCATTGA | 54 | 9976 | 9995 | 349 |
| 590222 | 827 | 846 | TGGCAAAATACAGGTCATTG | 52 | 9977 | 9996 | 350 |
| 393387 | 828 | 847 | CTGGCAAAATACAGGTCATT | 51 | 9978 | 9997 | 351 |
| 590223 | 829 | 848 | TCTGGCAAAATACAGGTCAT | 47 | 9979 | 9998 | 352 |
| 590224 | 830 | 849 | GTCTGGCAAAATACAGGTCA | 44 | 9980 | 9999 | 353 |
| 590225 | 831 | 850 | AGTCTGGCAAAATACAGGTC | 50 | 9981 | 10000 | 354 |
| 489538 | 832 | 851 | AAGTCTGGCAAAATACAGGT | 38 | 9982 | 10001 | 355 |
| 590226 | 833 | 852 | TAAGTCTGGCAAAATACAGG | 33 | 9983 | 10002 | 356 |
| 590227 | 834 | 853 | TTAAGTCTGGCAAAATACAG | 20 | 9984 | 10003 | 357 |
| 150482 | 853 | 872 | TTTAATACCCATCTGTGATT | 29 | 10003 | 10022 | 55 |
| 590228 | 854 | 873 | GTTTAATACCCATCTGTGAT | 33 | 10004 | 10023 | 358 |
| 150483 | 855 | 874 | AGTTTAATACCCATCTGTGA | 44 | 10005 | 10024 | 56 |
| 590229 | 856 | 875 | AAGTTTAATACCCATCTGTG | 51 | 10006 | 10025 | 359 |
| 590230 | 857 | 876 | CAAGTTTAATACCCATCTGT | 42 | 10007 | 10026 | 360 |
| 590231 | 858 | 877 | ACAAGTTTAATACCCATCTG | 38 | 10008 | 10027 | 361 |
| 393389 | 859 | 878 | GACAAGTTTAATACCCATCT | 48 | 10009 | 10028 | 362 |
| 590232 | 860 | 879 | TGACAAGTTTAATACCCATC | 55 | 10010 | 10029 | 363 |
| 590233 | 861 | 880 | CTGACAAGTTTAATACCCAT | 49 | 10011 | 10030 | 364 |
| 489541 | 862 | 881 | TCTGACAAGTTTAATACCCA | 52 | 10012 | 10031 | 365 |
| 590234 | 863 | 882 | TTCTGACAAGTTTAATACCC | 39 | 10013 | 10032 | 366 |
| 590235 | 864 | 883 | ATTCTGACAAGTTTAATACC | 21 | 10014 | 10033 | 367 |
| 590236 | 865 | 884 | AATTCTGACAAGTTTAATAC | 4 | 10015 | 10034 | 368 |
| 393390 | 866 | 885 | AAATTCTGACAAGTTTAATA | 7 | 10016 | 10035 | 369 |
| 590237 | 867 | 886 | GAAATTCTGACAAGTTTAAT | 5 | 10017 | 10036 | 370 |
| 436881 | 868 | 887 | AGAAATTCTGACAAGTTTAA | 33 | 10018 | 10037 | 371 |
| 590238 | 869 | 888 | AAGAAATTCTGACAAGTTTA | 20 | 10019 | 10038 | 372 |
| 590239 | 891 | 910 | TTATTCACAGGCTTGAATGA | 23 | 10041 | 10060 | 373 |
| 489544 | 892 | 911 | TTTATTCACAGGCTTGAATG | 41 | 10042 | 10061 | 374 |
| 590240 | 893 | 912 | TTTTATTCACAGGCTTGAAT | 40 | 10043 | 10062 | 375 |
| 436884 | 894 | 913 | TTTTTATTCACAGGCTTGAA | 31 | 10044 | 10063 | 376 |
| 590241 | 895 | 914 | GTTTTTATTCACAGGCTTGA | 39 | 10045 | 10064 | 377 |
| 150488 | 896 | 915 | GGTTTTTATTCACAGGCTTG | 51 | 10046 | 10065 | 57 |
| 590242 | 897 | 916 | GGGTTTTTATTCACAGGCTT | 46 | 10047 | 10066 | 378 |
| 150489 | 898 | 917 | AGGGTTTTTATTCACAGGCT | 52 | 10048 | 10067 | 58 |
| 590243 | 899 | 918 | CAGGGTTTTTATTCACAGGC | 49 | 10049 | 10068 | 379 |
| 590244 | 900 | 919 | ACAGGGTTTTTATTCACAGG | 38 | 10050 | 10069 | 380 |
| 590245 | 901 | 920 | TACAGGGTTTTTATTCACAG | 34 | 10051 | 10070 | 381 |
| 150490 | 902 | 921 | ATACAGGGTTTTTATTCACA | 30 | 10052 | 10071 | 59 |
| 590246 | 903 | 922 | CATACAGGGTTTTTATTCAC | 34 | 10053 | 10072 | 382 |
| 150491 | 904 | 923 | CCATACAGGGTTTTTATTCA | 34 | 10054 | 10073 | 60 |
| 590247 | 905 | 924 | GCCATACAGGGTTTTTATTC | 34 | 10055 | 10074 | 383 |
| 590248 | 906 | 925 | TGCCATACAGGGTTTTTATT | 33 | 10056 | 10075 | 384 |
| 393393 | 907 | 926 | GTGCCATACAGGGTTTTTAT | 43 | 10057 | 10076 | 385 |
| 590249 | 908 | 927 | AGTGCCATACAGGGTTTTTA | 12 | 10058 | 10077 | 386 |
| Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2 | |||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | % inhibition with RTS3898 | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | CCGTCGCCCTTCAGCACGCA | 86 | 973 | 992 | 21 |
| 590280 | n/a | n/a | TGGAAAAACTCAAATGTGAA | 51 | 3422 | 3441 | 387 |
| 590281 | n/a | n/a | TTTCCCTTTCTTTTCCACAC | 76 | 5738 | 5757 | 388 |
| 590282 | n/a | n/a | TCTTTCCCTTTCTTTTCCAC | 65 | 5740 | 5759 | 389 |
| 590283 | n/a | n/a | TACCTTCTCTGCCCTTGCAG | 74 | 1687 | 1706 | 390 |
| 590284 | n/a | n/a | GCAAGGGCCAAGGCTGCTGC | 75 | 6879 | 6898 | 391 |
| 590285 | n/a | n/a | AAAGCTAAATTATGAATTAA | 12 | 7592 | 7611 | 392 |
| 590286 | n/a | n/a | CTAATGAAGGCTCAGTATGA | 59 | 3193 | 3212 | 393 |
| 590287 | n/a | n/a | GGAGTCAAATGCCAAAGAAC | 60 | 2463 | 2482 | 394 |
| 590288 | n/a | n/a | TGAATTAAAGTTCCCAAATA | 5 | 7580 | 7599 | 395 |
| 590289 | n/a | n/a | ACTTGGTGCAGGCAGAATAT | 63 | 6916 | 6935 | 396 |
| 590290 | n/a | n/a | CCTCTGATATAAAAATCTTG | 67 | 8143 | 8162 | 397 |
| 590291 | n/a | n/a | AAAGTTGGAGAGAGTTTCTG | 8 | 4940 | 4959 | 398 |
| 590292 | n/a | n/a | TCTCTGCCCTTGCAGCCCAA | 80 | 1682 | 1701 | 399 |
| 590293 | n/a | n/a | TTACTTGGTGCAGGCAGAAT | 56 | 6918 | 6937 | 400 |
| 590294 | n/a | n/a | AATGGAGTCAAATGCCAAAG | 66 | 2466 | 2485 | 401 |
| 590295 | n/a | n/a | TATGAATTAAAGTTCCCAAA | 20 | 7582 | 7601 | 402 |
| 590296 | n/a | n/a | AGTTCTATATTCAATAAATG | 21 | 7926 | 7945 | 403 |
| 590297 | n/a | n/a | TACAAGTAGTATACCATATG | 33 | 7753 | 7772 | 404 |
| 590298 | n/a | n/a | TAGCCTTAGAGCTGTACAAA | 70 | 1553 | 1572 | 405 |
| 590299 | n/a | n/a | GTCCCCATTTGTCAATTCCT | 71 | 7882 | 7901 | 406 |
| 590300 | n/a | n/a | AACCTGCCTACTGGCAGAGC | 59 | 2095 | 2114 | 407 |
| 590301 | n/a | n/a | CTTGTTCCCACACTCAATGC | 56 | 4747 | 4766 | 408 |
| 590302 | n/a | n/a | ACAAGTCATGATAACCTGCA | 61 | 8952 | 8971 | 409 |
| 590303 | n/a | n/a | TGTTTTCCAAACTCAGATCT | 52 | 8796 | 8815 | 410 |
| 590304 | n/a | n/a | AGAACCTCATAATATTAGAA | 9 | 9557 | 9576 | 411 |
| 590305 | n/a | n/a | GGTTTTAAACTTAACAAAAT | 1 | 8887 | 8906 | 412 |
| 590306 | n/a | n/a | CTCTGGTGTATTTTTAGTAA | 65 | 1831 | 1850 | 413 |
| 590307 | n/a | n/a | TATCTCTGCATATCTGGAAA | 71 | 3034 | 3053 | 414 |
| 590308 | n/a | n/a | CAGCCTTTTTAACCCAAAAG | 68 | 4407 | 4426 | 415 |
| 590309 | n/a | n/a | TGGAATGCTCCACTATCCAA | 57 | 3012 | 3031 | 416 |
| 590310 | n/a | n/a | CGTTCAGAAGTTTGTCTCTG | 67 | 2126 | 2145 | 417 |
| 590311 | n/a | n/a | CTGCTCAGGGAAGGTGGAAA | 53 | 2922 | 2941 | 418 |
| 590312 | n/a | n/a | TCAAGAGAAGCTAGGAAAAC | 50 | 3154 | 3173 | 419 |
| 590313 | n/a | n/a | TCCCTTTCTTTTCCACACCT | 74 | 5736 | 5755 | 420 |
| 590314 | n/a | n/a | TTGTTCCCACACTCAATGCA | 56 | 4746 | 4765 | 421 |
| 590315 | n/a | n/a | TCACCAGCACAGCACAACAC | 58 | 5076 | 5095 | 422 |
| 590316 | n/a | n/a | CCTGGGATCATTACAAAAGT | 42 | 6155 | 6174 | 423 |
| 590317 | n/a | n/a | AGTAGTATACCATATGAACT | 35 | 7749 | 7768 | 424 |
| 590318 | n/a | n/a | TCTAATATGGTCAAATGTAA | 27 | 8779 | 8798 | 425 |
| 590319 | n/a | n/a | GGTTGGGCTCTGGTGTATTT | 64 | 1838 | 1857 | 426 |
| 590320 | n/a | n/a | TGCCCTTTACTTGGTGCAGG | 56 | 6924 | 6943 | 427 |
| 590321 | n/a | n/a | AGAGAGTTTCTGAACAAAGA | 24 | 4932 | 4951 | 428 |
| 590322 | n/a | n/a | GAATTTCAGCAATTACAGAA | 33 | 6613 | 6632 | 429 |
| 590323 | n/a | n/a | ACAAGTTAAACAAGTCATGA | 9 | 8961 | 8980 | 430 |
| 590324 | n/a | n/a | TGTGCCCTTTACTTGGTGCA | 47 | 6926 | 6945 | 431 |
| 590325 | n/a | n/a | TTAGGAGGAGGAAAAGGACC | 23 | 1719 | 1738 | 432 |
| 590326 | n/a | n/a | ACTGGCAGAGCAATTTTAAA | 25 | 2086 | 2105 | 433 |
| 590327 | n/a | n/a | AGTCAAATGCCAAAGAACCT | 58 | 2461 | 2480 | 434 |
| 590328 | n/a | n/a | AAGCATCAGATGGATTAGGG | 17 | 8411 | 8430 | 435 |
| 590329 | n/a | n/a | GTCCGCGGGACCCTCAGGAA | 54 | 1414 | 1433 | 436 |
| 590330 | n/a | n/a | CAATTACAGAAATGGATCAA | 42 | 6604 | 6623 | 437 |
| 590331 | n/a | n/a | GCTGTCAAGTAATCACTACC | 27 | 9606 | 9625 | 438 |
| 590332 | n/a | n/a | AGTGCAAAGTTGGAGAGAGT | 33 | 4945 | 4964 | 439 |
| 590333 | n/a | n/a | ACTTGCTTCCAATCCCAAAT | 78 | 6436 | 6455 | 440 |
| 590334 | n/a | n/a | AACTCAAATGTGAAAGTTGT | 51 | 3416 | 3435 | 441 |
| 590335 | n/a | n/a | TTTTAGTAAGATCTTCAAAT | 14 | 1820 | 1839 | 442 |
| 590336 | n/a | n/a | ATTTCAGCAATTACAGAAAT | 27 | 6611 | 6630 | 443 |
| 590337 | n/a | n/a | TTAAGTGTCCCCATTTGTCA | 56 | 7888 | 7907 | 444 |
| 590338 | n/a | n/a | TTAGCAACCTGCCTACTGGC | 57 | 2100 | 2119 | 445 |
| 590339 | n/a | n/a | TATTACAAGAGTTAAGCATC | 41 | 7711 | 7730 | 446 |
| 590340 | n/a | n/a | ATGTTGAATATACATGTACA | 36 | 4545 | 4564 | 447 |
| 590341 | n/a | n/a | TTTGTCTCTGACCATCTTAG | 74 | 2116 | 2135 | 448 |
| 590342 | n/a | n/a | TTTTCCACCAGTTGGTAACT | 59 | 2253 | 2272 | 449 |
| 590343 | n/a | n/a | CAACAGCTTCCCACAAGTTA | 28 | 8973 | 8992 | 450 |
| 590344 | n/a | n/a | CAAATGTGAAAGTTGTCCCT | 62 | 3412 | 3431 | 451 |
| 590345 | n/a | n/a | GCTACCTTCTCTGCCCTTGC | 73 | 1689 | 1708 | 452 |
| 590346 | n/a | n/a | TCTTAGCAGAACAGTGTTCT | 51 | 8743 | 8762 | 453 |
| 590347 | n/a | n/a | ATACATTCTAAAAAGAAACA | 41 | 7563 | 7582 | 454 |
| 590348 | n/a | n/a | GCACATATTTACAAGTAGTA | 58 | 7762 | 7781 | 455 |
| 590349 | n/a | n/a | GGGTCACCAGCACAGCACAA | 35 | 5079 | 5098 | 456 |
| 590350 | n/a | n/a | GTGCAAGGGCCAAGGCTGCT | 66 | 6881 | 6900 | 457 |
| 590351 | n/a | n/a | ACCTGGGTTCATGCATGGAT | 72 | 2902 | 2921 | 458 |
| 590352 | n/a | n/a | ATCACTATTTGAAACTAAAT | 0 | 6569 | 6588 | 459 |
| 590353 | n/a | n/a | ATACAATAAAGTTGACCTCT | 64 | 5483 | 5502 | 460 |
| 590354 | n/a | n/a | TTTTAAACTTAACAAAATGT | 10 | 8885 | 8904 | 461 |
| 590355 | n/a | n/a | CTCCCCGCGCTCCCGCCACG | 15 | 1268 | 1287 | 462 |
| 590356 | n/a | n/a | GAAGGCTCAGTATGAAGAGA | 65 | 3188 | 3207 | 463 |
| Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2 | |||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | % inhibition with RTS3898 | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | CCGTCGCCCTTCAGCACGCA | 87 | 973 | 992 | 21 |
| 590357 | n/a | n/a | AGAAAACAGCTGATTTACCT | 40 | 4915 | 4934 | 464 |
| 590358 | n/a | n/a | CCACAAGTTAAACAAGTCAT | n.d. | 8963 | 8982 | 465 |
| 590359 | n/a | n/a | CAAATTTGCAAACAAGTAGC | 61 | 8331 | 8350 | 466 |
| 590360 | n/a | n/a | CCTAATTTGAACTGCAAGTA | n.d. | 8665 | 8684 | 467 |
| 590361 | n/a | n/a | AAAAAACTCATCTCCCCAGC | 70 | 6969 | 6988 | 468 |
| 590362 | n/a | n/a | AGGCTCAGTATGAAGAGATC | 67 | 3186 | 3205 | 469 |
| 590363 | n/a | n/a | TGTTATCAAGAGCACAGGGC | 58 | 3383 | 3402 | 470 |
| 590364 | n/a | n/a | CCTCAAAAGGGAGATGGTAA | 41 | 4768 | 4787 | 471 |
| 590365 | n/a | n/a | AGTATGGGTCACCAGCACAG | 71 | 5084 | 5103 | 472 |
| 590366 | n/a | n/a | TCACAATCTAGTGCAGTTAC | 70 | 5584 | 5603 | 473 |
| 590367 | n/a | n/a | CAAGTGAGAAACCCAATCCT | n.d. | 8856 | 8875 | 474 |
| 590368 | n/a | n/a | AGAAAATCTGGCCATTTTAA | n.d. | 8832 | 8851 | 475 |
| 590369 | n/a | n/a | ACAGGTAATGGTGCTCCGTG | 71 | 3716 | 3735 | 476 |
| 590370 | n/a | n/a | TGAAAGGCTTTCAGAAAACA | 44 | 8102 | 8121 | 477 |
| 590371 | n/a | n/a | CAGGCAAGTTACAGGAAGCA | 64 | 6687 | 6706 | 478 |
| 590372 | n/a | n/a | CAGCAAGCTGCTTAACTGCT | 65 | 4800 | 4819 | 479 |
| 590373 | n/a | n/a | TGTTGCAAAGACATTACCTT | n.d. | 9455 | 9474 | 480 |
| 590374 | n/a | n/a | GAAACTAAATTAGCAAGATG | 43 | 6559 | 6578 | 481 |
| 590375 | n/a | n/a | TCAAGAGCACAGGGCCAAAA | 60 | 3378 | 3397 | 482 |
| 590376 | n/a | n/a | AGGAGGAGGAAAAGGACCTC | 53 | 1717 | 1736 | 483 |
| 590377 | n/a | n/a | CCTCAGCCTTTTTAACCCAA | 73 | 4410 | 4429 | 484 |
| 590378 | n/a | n/a | CTATGTTGTAGACCACCACA | n.d. | 9384 | 9403 | 485 |
| 590379 | n/a | n/a | CTCCGTGGCTACATACAGAA | 66 | 3703 | 3722 | 486 |
| 590380 | n/a | n/a | TTTATCTGGATCTTTAGAAA | n.d. | 8642 | 8661 | 487 |
| 590381 | n/a | n/a | AAAAAAAGGAAAGTGAAAGT | n.d. | 9279 | 9298 | 488 |
| 590382 | n/a | n/a | GGTTCATGCATGGATTCTCA | 76 | 2897 | 2916 | 489 |
| 590383 | n/a | n/a | CTGCAAAGTGTCACACAAAC | 76 | 1630 | 1649 | 490 |
| 590384 | n/a | n/a | TTCAGAAGTACCAAAGGGTA | 53 | 8227 | 8246 | 491 |
| 590385 | n/a | n/a | TAAAAGCATTCCAGCATTTG | 44 | 7848 | 7867 | 492 |
| 590386 | n/a | n/a | TAGTATACCATATGAACTCC | 73 | 7747 | 7766 | 493 |
| 590387 | n/a | n/a | TGCATATCTGGAAAGCTGGA | 59 | 3028 | 3047 | 494 |
| 590388 | n/a | n/a | CTTAACTGCTCTAGGCCTGT | 54 | 4790 | 4809 | 495 |
| 590389 | n/a | n/a | AGGCACCGACCGGGCGGCAC | 21 | 1155 | 1174 | 496 |
| 590390 | n/a | n/a | TGCAAAGTTGGAGAGAGTTT | 32 | 4943 | 4962 | 497 |
| 590391 | n/a | n/a | TCCTCAAAAGGGAGATGGTA | 37 | 4769 | 4788 | 498 |
| 590392 | n/a | n/a | AGTATACCATATGAACTCCA | 76 | 7746 | 7765 | 499 |
| 590393 | n/a | n/a | TATTTGTACATGTTGAATAT | 2 | 4554 | 4573 | 500 |
| 590394 | n/a | n/a | ACCCAAAAGGTGTATGTCTC | 71 | 4396 | 4415 | 501 |
| 590395 | n/a | n/a | CTTTGGAAAAAAAGGAAAGT | n.d. | 9285 | 9304 | 502 |
| 590396 | n/a | n/a | GGGAGAAAGGCAGGCAAGTT | 20 | 6697 | 6716 | 503 |
| 590397 | n/a | n/a | TTAAGCCCAGGAAGTAAAAG | 9 | 7862 | 7881 | 504 |
| 590398 | n/a | n/a | AGACATTACCTTTAAACATT | n.d. | 9447 | 9466 | 505 |
| 590399 | n/a | n/a | GTGGCTTAAGAAATGCTCCG | 26 | 2050 | 2069 | 506 |
| 590400 | n/a | n/a | GTGAGAAGGGAACAGAAACA | 48 | 7466 | 7485 | 507 |
| 590401 | n/a | n/a | AAAAGCATCAGATGGATTAG | 21 | 8413 | 8432 | 508 |
| 590402 | n/a | n/a | TTCCACCAGTTGGTAACTTC | 78 | 2251 | 2270 | 509 |
| 590403 | n/a | n/a | TTTTTAGTAAGATCTTCAAA | 15 | 1821 | 1840 | 510 |
| 590404 | n/a | n/a | ATCTGTGTCCAAATCCCAGG | 59 | 4847 | 4866 | 511 |
| 590405 | n/a | n/a | TAAGATCTTCAAATAAGCTA | 33 | 1814 | 1833 | 512 |
| 590406 | n/a | n/a | ATCAACTCTTTCCCTTTCTT | 63 | 5746 | 5765 | 513 |
| 590407 | n/a | n/a | TGTGTCCTCAAAAGGGAGAT | 37 | 4773 | 4792 | 514 |
| 590408 | n/a | n/a | TACCTCCTCCCAACAATACC | n.d. | 9590 | 9609 | 515 |
| 590409 | n/a | n/a | TTCTGCTTTACAACTATGGC | n.d. | 9133 | 9152 | 516 |
| 590410 | n/a | n/a | GTACATGTTGAATATACATG | 35 | 4549 | 4568 | 517 |
| 590411 | n/a | n/a | TTTGTGGCTAATCTTAAGGT | 47 | 5699 | 5718 | 518 |
| 590412 | n/a | n/a | TCCTGCCTCAGCCTTTTTAA | 34 | 4415 | 4434 | 519 |
| 590413 | n/a | n/a | CGGTGTCCGCGGGACCCTCA | 59 | 1418 | 1437 | 520 |
| 590414 | n/a | n/a | GAAATGGATCAAATCTGATC | 50 | 6596 | 6615 | 521 |
| 590415 | n/a | n/a | GGTAGTTCATGAGCTAAATT | 31 | 8371 | 8390 | 522 |
| 590416 | n/a | n/a | AATGGAGTCTCGACTAGTTT | 62 | 8072 | 8091 | 523 |
| 590417 | n/a | n/a | CAAGTATGGGTCACCAGCAC | 57 | 5086 | 5105 | 524 |
| 590418 | n/a | n/a | GGTGTCCGCGGGACCCTCAG | 40 | 1417 | 1436 | 525 |
| 590419 | n/a | n/a | CGCCACGCGCAGGCCCAGCC | 37 | 1255 | 1274 | 526 |
| 590420 | n/a | n/a | TCTAGGCCTGTGTCCTCAAA | 75 | 4781 | 4800 | 527 |
| 590421 | n/a | n/a | ACTGTCCTGGGCTAATGAAG | 36 | 3204 | 3223 | 528 |
| 590422 | n/a | n/a | AAGCATCTTGTTACCTCTCT | 52 | 7698 | 7717 | 529 |
| 590423 | n/a | n/a | GCCCAGGAAGTAAAAGCATT | 38 | 7858 | 7877 | 530 |
| 590424 | n/a | n/a | GTAAGATCTTCAAATAAGCT | 46 | 1815 | 1834 | 531 |
| 590425 | n/a | n/a | AAAGGGAGATGGTAATCTTG | 48 | 4763 | 4782 | 532 |
| 590426 | n/a | n/a | GCCAAGGCTGCTGCCTTACA | 66 | 6873 | 6892 | 533 |
| 590427 | n/a | n/a | CAGACTAACTGTTCCTGTCC | 43 | 2363 | 2382 | 534 |
| 590428 | n/a | n/a | TTTGTCAATTCCTTTAAGCC | 39 | 7875 | 7894 | 535 |
| 590429 | n/a | n/a | ACTACCTCCTCCCAACAATA | n.d. | 9592 | 9611 | 536 |
| 590430 | n/a | n/a | TACCTCTCTTCATCCTTTGG | 50 | 7687 | 7706 | 537 |
| 590431 | n/a | n/a | ACTGCTCTAGGCCTGTGTCC | 59 | 4786 | 4805 | 538 |
| 590432 | n/a | n/a | CCTCCTCCCAACAATACCCA | n.d. | 9588 | 9607 | 539 |
| 590433 | n/a | n/a | GGCAGGCAAGTTACAGGAAG | 42 | 6689 | 6708 | 540 |
| Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2 | |||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | % inhibition with RTS3898 | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 592596 | 2 | 21 | TCGCCCACTCTGGCCCCAAA | 86 | 808 | 827 | 541 |
| 592597 | 4 | 23 | CCTCGCCCACTCTGGCCCCA | 89 | 810 | 829 | 542 |
| 592598 | 6 | 25 | CGCCTCGCCCACTCTGGCCC | 56 | 812 | 831 | 543 |
| 592599 | 8 | 27 | CGCGCCTCGCCCACTCTGGC | 68 | 814 | 833 | 544 |
| 592600 | 10 | 29 | TCCGCGCCTCGCCCACTCTG | 64 | 816 | 835 | 545 |
| 592601 | 12 | 31 | CCTCCGCGCCTCGCCCACTC | 83 | 818 | 837 | 546 |
| 592602 | 14 | 33 | GACCTCCGCGCCTCGCCCAC | 89 | 820 | 839 | 547 |
| 592603 | 16 | 35 | CAGACCTCCGCGCCTCGCCC | 88 | 822 | 841 | 548 |
| 592604 | 18 | 37 | GCCAGACCTCCGCGCCTCGC | 79 | 824 | 843 | 549 |
| 592605 | 20 | 39 | AGGCCAGACCTCCGCGCCTC | 89 | 826 | 845 | 550 |
| 592606 | 22 | 41 | ATAGGCCAGACCTCCGCGCC | 88 | 828 | 847 | 551 |
| 592607 | 24 | 43 | TTATAGGCCAGACCTCCGCG | 75 | 830 | 849 | 552 |
| 592608 | 26 | 45 | CTTTATAGGCCAGACCTCCG | 21 | 832 | 851 | 553 |
| 592609 | 28 | 47 | TACTTTATAGGCCAGACCTC | 76 | 834 | 853 | 554 |
| 592610 | 30 | 49 | ACTACTTTATAGGCCAGACC | 60 | 836 | 855 | 555 |
| 592611 | 32 | 51 | CGACTACTTTATAGGCCAGA | 0 | 838 | 857 | 556 |
| 592612 | 34 | 53 | CGCGACTACTTTATAGGCCA | 0 | 840 | 859 | 557 |
| 592613 | 36 | 55 | TCCGCGACTACTTTATAGGC | 0 | 842 | 861 | 558 |
| 592614 | 38 | 57 | TCTCCGCGACTACTTTATAG | 7 | 844 | 863 | 559 |
| 592615 | 40 | 59 | CGTCTCCGCGACTACTTTAT | 0 | 846 | 865 | 560 |
| 592616 | 42 | 61 | CCCGTCTCCGCGACTACTTT | 0 | 848 | 867 | 561 |
| 592617 | 44 | 63 | ACCCCGTCTCCGCGACTACT | 0 | 850 | 869 | 562 |
| 592618 | 46 | 65 | GCACCCCGTCTCCGCGACTA | 0 | 852 | 871 | 563 |
| 592619 | 48 | 67 | CAGCACCCCGTCTCCGCGAC | 0 | 854 | 873 | 564 |
| 592620 | 50 | 69 | ACCAGCACCCCGTCTCCGCG | 0 | 856 | 875 | 565 |
| 592621 | 52 | 71 | AAACCAGCACCCCGTCTCCG | 2 | 858 | 877 | 566 |
| 592622 | 54 | 73 | GCAAACCAGCACCCCGTCTC | 4 | 860 | 879 | 567 |
| 592623 | 56 | 75 | ACGCAAACCAGCACCCCGTC | 0 | 862 | 881 | 568 |
| 592624 | 58 | 77 | CGACGCAAACCAGCACCCCG | 0 | 864 | 883 | 569 |
| 592625 | 60 | 79 | TACGACGCAAACCAGCACCC | 0 | 866 | 885 | 570 |
| 592626 | 62 | 81 | ACTACGACGCAAACCAGCAC | 0 | 868 | 887 | 571 |
| 592627 | 64 | 83 | AGACTACGACGCAAACCAGC | 1 | 870 | 889 | 572 |
| 592628 | 66 | 85 | GGAGACTACGACGCAAACCA | 0 | 872 | 891 | 573 |
| 592629 | 68 | 87 | CAGGAGACTACGACGCAAAC | 0 | 874 | 893 | 574 |
| 592630 | 70 | 89 | TGCAGGAGACTACGACGCAA | 0 | 876 | 895 | 575 |
| 592631 | 72 | 91 | GCTGCAGGAGACTACGACGC | 1 | 878 | 897 | 576 |
| 150511 | 74 | 93 | ACGCTGCAGGAGACTACGAC | 0 | 880 | 899 | 61 |
| 592632 | 90 | 109 | GCAACGGAAACCCCAGACGC | 2 | 896 | 915 | 577 |
| 592633 | 92 | 111 | CTGCAACGGAAACCCCAGAC | 0 | 898 | 917 | 578 |
| 592634 | 94 | 113 | GACTGCAACGGAAACCCCAG | 0 | 900 | 919 | 579 |
| 345715 | 95 | 114 | GGACTGCAACGGAAACCCCA | 0 | 901 | 920 | 580 |
| 592635 | 96 | 115 | AGGACTGCAACGGAAACCCC | 1 | 902 | 921 | 581 |
| 150437 | 98 | 117 | CGAGGACTGCAACGGAAACC | 6 | 904 | 923 | 62 |
| 592636 | 100 | 119 | TCCGAGGACTGCAACGGAAA | 6 | 906 | 925 | 582 |
| 592637 | 102 | 121 | GTTCCGAGGACTGCAACGGA | 12 | 908 | 927 | 583 |
| 592638 | 104 | 123 | TGGTTCCGAGGACTGCAACG | 0 | 910 | 929 | 584 |
| 592639 | 106 | 125 | CCTGGTTCCGAGGACTGCAA | 32 | 912 | 931 | 585 |
| 592640 | 108 | 127 | GTCCTGGTTCCGAGGACTGC | 68 | 914 | 933 | 586 |
| 345717 | 110 | 129 | AGGTCCTGGTTCCGAGGACT | 65 | 916 | 935 | 587 |
| 592641 | 112 | 131 | CGAGGTCCTGGTTCCGAGGA | 84 | 918 | 937 | 588 |
| 592642 | 114 | 133 | GCCGAGGTCCTGGTTCCGAG | 86 | 920 | 939 | 589 |
| 592643 | 116 | 135 | ACGCCGAGGTCCTGGTTCCG | 78 | 922 | 941 | 590 |
| 592644 | 118 | 137 | CCACGCCGAGGTCCTGGTTC | 79 | 924 | 943 | 591 |
| 345719 | 120 | 139 | GGCCACGCCGAGGTCCTGGT | 63 | 926 | 945 | 592 |
| 150441 | 122 | 141 | TAGGCCACGCCGAGGTCCTG | 81 | 928 | 947 | 63 |
| 592645 | 124 | 143 | GCTAGGCCACGCCGAGGTCC | 63 | 930 | 949 | 593 |
| 592646 | 126 | 145 | TCGCTAGGCCACGCCGAGGT | 56 | 932 | 951 | 594 |
| 592647 | 128 | 147 | ACTCGCTAGGCCACGCCGAG | 48 | 934 | 953 | 595 |
| 345721 | 130 | 149 | TAACTCGCTAGGCCACGCCG | 63 | 936 | 955 | 596 |
| 592648 | 132 | 151 | CATAACTCGCTAGGCCACGC | 38 | 938 | 957 | 597 |
| 592649 | 134 | 153 | GCCATAACTCGCTAGGCCAC | 52 | 940 | 959 | 598 |
| 592650 | 136 | 155 | TCGCCATAACTCGCTAGGCC | 59 | 942 | 961 | 599 |
| 592651 | 138 | 157 | CGTCGCCATAACTCGCTAGG | 55 | 944 | 963 | 600 |
| 592652 | 156 | 175 | CAGCACGCACACGGCCTTCG | 56 | 962 | 981 | 601 |
| 333605 | 158 | 177 | TTCAGCACGCACACGGCCTT | 85 | 964 | 983 | 64 |
| 333606 | 160 | 179 | CCTTCAGCACGCACACGGCC | 82 | 966 | 985 | 65 |
| 146144 | 162 | 181 | GCCCTTCAGCACGCACACGG | 58 | 968 | 987 | 66 |
| 333609 | 164 | 183 | TCGCCCTTCAGCACGCACAC | 79 | 970 | 989 | 67 |
| 146145 | 165 | 184 | GTCGCCCTTCAGCACGCACA | 86 | 971 | 990 | 54 |
| 333610 | 166 | 185 | CGTCGCCCTTCAGCACGCAC | 79 | 972 | 991 | 68 |
| 333611 | 167 | 186 | CCGTCGCCCTTCAGCACGCA | 83 | 973 | 992 | 21 |
| 592653 | 168 | 187 | GCCGTCGCCCTTCAGCACGC | 79 | 974 | 993 | 602 |
| 592654 | 169 | 188 | GGCCGTCGCCCTTCAGCACG | 72 | 975 | 994 | 603 |
| 592655 | 170 | 189 | GGGCCGTCGCCCTTCAGCAC | 51 | 976 | 995 | 604 |
| 592656 | 172 | 191 | CTGGGCCGTCGCCCTTCAGC | 45 | 978 | 997 | 605 |
| 592657 | 174 | 193 | CACTGGGCCGTCGCCCTTCA | 33 | 980 | 999 | 606 |
| 592658 | 176 | 195 | TGCACTGGGCCGTCGCCCTT | 72 | 982 | 1001 | 607 |
| 592659 | 178 | 197 | CCTGCACTGGGCCGTCGCCC | 76 | 984 | 1003 | 608 |
| Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2 | |||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | % inhibition with RTS3898 | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | CCGTCGCCCTTCAGCACGCA | 87 | 973 | 992 | 21 |
| 150443 | 180 | 199 | GCCCTGCACTGGGCCGTCGC | 65 | 986 | 1005 | 69 |
| 592660 | 182 | 201 | ATGCCCTGCACTGGGCCGTC | 52 | 988 | 1007 | 609 |
| 592661 | 184 | 203 | TGATGCCCTGCACTGGGCCG | 30 | 990 | 1009 | 610 |
| 592662 | 186 | 205 | GATGATGCCCTGCACTGGGC | 38 | 992 | 1011 | 611 |
| 592663 | 188 | 207 | TTGATGATGCCCTGCACTGG | 36 | 994 | 1013 | 612 |
| 150444 | 190 | 209 | AATTGATGATGCCCTGCACT | 48 | 996 | 1015 | 70 |
| 592664 | 192 | 211 | GAAATTGATGATGCCCTGCA | 35 | 998 | 1017 | 15 |
| 592665 | 194 | 213 | TCGAAATTGATGATGCCCTG | 40 | 1000 | 1019 | 614 |
| 592666 | 196 | 215 | GCTCGAAATTGATGATGCCC | 68 | 1002 | 1021 | 615 |
| 592667 | 198 | 217 | CTGCTCGAAATTGATGATGC | 63 | 1004 | 1023 | 616 |
| 592668 | 200 | 219 | TTCTGCTCGAAATTGATGAT | 47 | 1006 | 1025 | 617 |
| 592669 | 239 | 258 | TTAATGCTTCCCCACACCTT | 68 | 4993 | 5012 | 618 |
| 592670 | 241 | 260 | CTTTAATGCTTCCCCACACC | 71 | 4995 | 5014 | 619 |
| 592671 | 243 | 262 | TCCTTTAATGCTTCCCCACA | 69 | 4997 | 5016 | 620 |
| 150448 | 245 | 264 | AGTCCTTTAATGCTTCCCCA | 76 | 4999 | 5018 | 71 |
| 592672 | 247 | 266 | TCAGTCCTTTAATGCTTCCC | 75 | 5001 | 5020 | 621 |
| 592673 | 249 | 268 | AGTCAGTCCTTTAATGCTTC | 58 | 5003 | 5022 | 622 |
| 592674 | 251 | 270 | TCAGTCAGTCCTTTAATGCT | 46 | 5005 | 5024 | 623 |
| 592675 | 253 | 272 | CTTCAGTCAGTCCTTTAATG | 41 | 5007 | 5026 | 624 |
| 592676 | 255 | 274 | GCCTTCAGTCAGTCCTTTAA | 62 | 5009 | 5028 | 625 |
| 150449 | 257 | 276 | AGGCCTTCAGTCAGTCCTTT | 65 | 5011 | 5030 | 72 |
| 592677 | 259 | 278 | GCAGGCCTTCAGTCAGTCCT | 69 | 5013 | 5032 | 626 |
| 592678 | 261 | 280 | ATGCAGGCCTTCAGTCAGTC | 65 | 5015 | 5034 | 627 |
| 592679 | 263 | 282 | CCATGCAGGCCTTCAGTCAG | 53 | 5017 | 5036 | 628 |
| 592680 | 277 | 296 | CATGAACATGGAATCCATGC | 63 | 5031 | 5050 | 629 |
| 592681 | 279 | 298 | CTCATGAACATGGAATCCAT | 60 | 5033 | 5052 | 630 |
| 592682 | 281 | 300 | AACTCATGAACATGGAATCC | 56 | 5035 | 5054 | 631 |
| 592683 | 284 | 303 | CCAAACTCATGAACATGGAA | 60 | 5038 | 5057 | 632 |
| 592684 | 286 | 305 | CTCCAAACTCATGAACATGG | 69 | 5040 | 5059 | 633 |
| 592685 | 288 | 307 | ATCTCCAAACTCATGAACAT | 40 | 5042 | 5061 | 634 |
| 592686 | 290 | 309 | TTATCTCCAAACTCATGAAC | 35 | 5044 | 5063 | 635 |
| 592687 | 292 | 311 | TATTATCTCCAAACTCATGA | 26 | 5046 | 5065 | 636 |
| 592688 | 294 | 313 | TGTATTATCTCCAAACTCAT | 41 | 5048 | 5067 | 637 |
| 150452 | 296 | 315 | GCTGTATTATCTCCAAACTC | 51 | 5050 | 5069 | 73 |
| 592689 | 298 | 317 | CTGCTGTATTATCTCCAAAC | 43 | 5052 | 5071 | 638 |
| 592690 | 300 | 319 | GCCTGCTGTATTATCTCCAA | 37 | n/a | n/a | 639 |
| 592691 | 302 | 321 | CAGCCTGCTGTATTATCTCC | 33 | n/a | n/a | 640 |
| 592692 | 304 | 323 | TACAGCCTGCTGTATTATCT | 27 | n/a | n/a | 641 |
| 592693 | 306 | 325 | GGTACAGCCTGCTGTATTAT | 21 | n/a | n/a | 642 |
| 592694 | 308 | 327 | CTGGTACAGCCTGCTGTATT | 23 | n/a | n/a | 643 |
| 592695 | 310 | 329 | CACTGGTACAGCCTGCTGTA | 46 | n/a | n/a | 644 |
| 592696 | 312 | 331 | TGCACTGGTACAGCCTGCTG | 40 | n/a | n/a | 645 |
| 592697 | 314 | 333 | CCTGCACTGGTACAGCCTGC | 62 | n/a | n/a | 646 |
| 592698 | 340 | 359 | TTCTGGATAGAGGATTAAAG | 41 | 7656 | 7675 | 647 |
| 592699 | 342 | 361 | TTTTCTGGATAGAGGATTAA | 29 | 7658 | 7677 | 648 |
| 592700 | 344 | 363 | TGTTTTCTGGATAGAGGATT | 51 | 7660 | 7679 | 649 |
| 592701 | 346 | 365 | CGTGTTTTCTGGATAGAGGA | 64 | 7662 | 7681 | 650 |
| 592702 | 348 | 367 | ACCGTGTTTTCTGGATAGAG | 44 | 7664 | 7683 | 651 |
| 592703 | 350 | 369 | CCACCGTGTTTTCTGGATAG | 62 | 7666 | 7685 | 652 |
| 592704 | 352 | 371 | GCCCACCGTGTTTTCTGGAT | 60 | 7668 | 7687 | 653 |
| 592705 | 354 | 373 | TGGCCCACCGTGTTTTCTGG | 62 | 7670 | 7689 | 654 |
| 592706 | 356 | 375 | TTTGGCCCACCGTGTTTTCT | 49 | 7672 | 7691 | 655 |
| 592707 | 358 | 377 | CCTTTGGCCCACCGTGTTTT | 52 | 7674 | 7693 | 656 |
| 592708 | 382 | 401 | AGTCTCCAACATGCCTCTCT | 53 | n/a | n/a | 657 |
| 592709 | 384 | 403 | CAAGTCTCCAACATGCCTCT | 39 | n/a | n/a | 658 |
| 489501 | 386 | 405 | CCCAAGTCTCCAACATGCCT | 75 | 8441 | 8460 | 659 |
| 150454 | 388 | 407 | TGCCCAAGTCTCCAACATGC | 86 | 8443 | 8462 | 74 |
| 592710 | 390 | 409 | ATTGCCCAAGTCTCCAACAT | 71 | 8445 | 8464 | 660 |
| 592711 | 392 | 411 | ACATTGCCCAAGTCTCCAAC | 64 | 8447 | 8466 | 661 |
| 592712 | 394 | 413 | TCACATTGCCCAAGTCTCCA | 59 | 8449 | 8468 | 662 |
| 489502 | 396 | 415 | AGTCACATTGCCCAAGTCTC | 70 | 8451 | 8470 | 663 |
| 592713 | 398 | 417 | GCAGTCACATTGCCCAAGTC | 70 | 8453 | 8472 | 664 |
| 592714 | 400 | 419 | CAGCAGTCACATTGCCCAAG | 84 | 8455 | 8474 | 665 |
| 592715 | 402 | 421 | GTCAGCAGTCACATTGCCCA | 83 | 8457 | 8476 | 666 |
| 592716 | 404 | 423 | TTGTCAGCAGTCACATTGCC | 59 | 8459 | 8478 | 667 |
| 489503 | 406 | 425 | CTTTGTCAGCAGTCACATTG | 47 | 8461 | 8480 | 668 |
| 592717 | 408 | 427 | ATCTTTGTCAGCAGTCACAT | 54 | 8463 | 8482 | 669 |
| 592718 | 410 | 429 | CCATCTTTGTCAGCAGTCAC | 76 | 8465 | 8484 | 670 |
| 592719 | 412 | 431 | CACCATCTTTGTCAGCAGTC | 75 | 8467 | 8486 | 671 |
| 592720 | 414 | 433 | CACACCATCTTTGTCAGCAG | 66 | 8469 | 8488 | 672 |
| 489504 | 416 | 435 | GCCACACCATCTTTGTCAGC | 60 | 8471 | 8490 | 673 |
| 592721 | 418 | 437 | CGGCCACACCATCTTTGTCA | 62 | 8473 | 8492 | 674 |
| 592722 | 420 | 439 | ATCGGCCACACCATCTTTGT | 57 | 8475 | 8494 | 675 |
| 592723 | 422 | 441 | ACATCGGCCACACCATCTTT | 54 | 8477 | 8496 | 676 |
| 150458 | 424 | 443 | ACACATCGGCCACACCATCT | 77 | 8479 | 8498 | 75 |
| 489505 | 426 | 445 | AGACACATCGGCCACACCAT | 84 | 8481 | 8500 | 677 |
| 592724 | 428 | 447 | ATAGACACATCGGCCACACC | 66 | 8483 | 8502 | 678 |
| Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2 | ||||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | % inhibition with RTS3898 | % inhibition with HTS90 | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | CCGTCGCCCTTCAGCACGCA | 87 | n.d. | 973 | 992 | 21 |
| 592725 | 430 | 449 | CAATAGACACATCGGCCACA | 67 | 65 | 8485 | 8504 | 679 |
| 592726 | 432 | 451 | TTCAATAGACACATCGGCCA | 62 | 66 | 8487 | 8506 | 680 |
| 592727 | 434 | 453 | TCTTCAATAGACACATCGGC | 56 | 49 | 8489 | 8508 | 681 |
| 489506 | 436 | 455 | AATCTTCAATAGACACATCG | 25 | 28 | 8491 | 8510 | 682 |
| 592728 | 438 | 457 | AGAATCTTCAATAGACACAT | 12 | 0 | 8493 | 8512 | 683 |
| 592729 | 440 | 459 | ACAGAATCTTCAATAGACAC | 24 | 16 | 8495 | 8514 | 684 |
| 592730 | 442 | 461 | TCACAGAATCTTCAATAGAC | 34 | 24 | 8497 | 8516 | 685 |
| 592731 | 444 | 463 | GATCACAGAATCTTCAATAG | 15 | 14 | 8499 | 8518 | 686 |
| 489507 | 446 | 465 | GAGATCACAGAATCTTCAAT | 42 | 46 | 8501 | 8520 | 687 |
| 592732 | 448 | 467 | GTGAGATCACAGAATCTTCA | n.d. | 58 | 8503 | 8522 | 688 |
| 592733 | 450 | 469 | GAGTGAGATCACAGAATCTT | n.d. | 45 | 8505 | 8524 | 689 |
| 592734 | 452 | 471 | GAGAGTGAGATCACAGAATC | n.d. | 48 | 8507 | 8526 | 690 |
| 592735 | 454 | 473 | CTGAGAGTGAGATCACAGAA | n.d. | 66 | 8509 | 8528 | 691 |
| 489508 | 456 | 475 | TCCTGAGAGTGAGATCACAG | n.d. | 60 | 8511 | 8530 | 692 |
| 333619 | 458 | 477 | TCTCCTGAGAGTGAGATCAC | n.d. | 65 | 8513 | 8532 | 76 |
| 592736 | 460 | 479 | GGTCTCCTGAGAGTGAGATC | n.d. | 40 | 8515 | 8534 | 693 |
| 592737 | 462 | 481 | ATGGTCTCCTGAGAGTGAGA | n.d. | 37 | 8517 | 8536 | 694 |
| 592738 | 464 | 483 | CAATGGTCTCCTGAGAGTGA | n.d. | 41 | 8519 | 8538 | 695 |
| 489509 | 466 | 485 | TGCAATGGTCTCCTGAGAGT | n.d. | 43 | 8521 | 8540 | 696 |
| 592739 | 468 | 487 | GATGCAATGGTCTCCTGAGA | n.d. | 16 | 8523 | 8542 | 697 |
| 592740 | 470 | 489 | ATGATGCAATGGTCTCCTGA | n.d. | 6 | 8525 | 8544 | 698 |
| 592741 | 472 | 491 | CAATGATGCAATGGTCTCCT | n.d. | 0 | 8527 | 8546 | 699 |
| 592742 | 474 | 493 | GCCAATGATGCAATGGTCTC | n.d. | 25 | 8529 | 8548 | 700 |
| 489510 | 476 | 495 | CGGCCAATGATGCAATGGTC | n.d. | 32 | 8531 | 8550 | 701 |
| 592743 | 478 | 497 | TGCGGCCAATGATGCAATGG | n.d. | 14 | 8533 | 8552 | 702 |
| 592744 | 480 | 499 | TGTGCGGCCAATGATGCAAT | n.d. | 0 | 8535 | 8554 | 703 |
| 592745 | 482 | 501 | AGTGTGCGGCCAATGATGCA | n.d. | 7 | 8537 | 8556 | 704 |
| 592746 | 484 | 503 | CCAGTGTGCGGCCAATGATG | n.d. | 25 | 8539 | 8558 | 705 |
| 489511 | 486 | 505 | CACCAGTGTGCGGCCAATGA | n.d. | 28 | 8541 | 8560 | 706 |
| 150460 | 488 | 507 | ACCACCAGTGTGCGGCCAAT | n.d. | 52 | 8543 | 8562 | 77 |
| 592747 | 490 | 509 | GGACCACCAGTGTGCGGCCA | n.d. | 44 | n/a | n/a | 707 |
| 592748 | 492 | 511 | ATGGACCACCAGTGTGCGGC | n.d. | 40 | n/a | n/a | 708 |
| 150462 | 494 | 513 | TCATGGACCACCAGTGTGCG | n.d. | 39 | n/a | n/a | 78 |
| 592749 | 496 | 515 | TTTCATGGACCACCAGTGTG | n.d. | 35 | n/a | n/a | 709 |
| 592750 | 498 | 517 | TTTTTCATGGACCACCAGTG | n.d. | 23 | n/a | n/a | 710 |
| 592751 | 500 | 519 | GCTTTTTCATGGACCACCAG | n.d. | 63 | n/a | n/a | 711 |
| 333636 | 536 | 555 | GTACTTTCTTCATTTCCACC | n.d. | 65 | 9686 | 9705 | 79 |
| 333638 | 538 | 557 | TTGTACTTTCTTCATTTCCA | n.d. | 66 | 9688 | 9707 | 80 |
| 333640 | 540 | 559 | CTTTGTACTTTCTTCATTTC | n.d. | 37 | 9690 | 9709 | 81 |
| 592752 | 543 | 562 | TGTCTTTGTACTTTCTTCAT | n.d. | 63 | 9693 | 9712 | 712 |
| 592753 | 545 | 564 | CCTGTCTTTGTACTTTCTTC | n.d. | 74 | 9695 | 9714 | 713 |
| 592754 | 547 | 566 | TTCCTGTCTTTGTACTTTCT | n.d. | 72 | 9697 | 9716 | 714 |
| 592755 | 549 | 568 | GTTTCCTGTCTTTGTACTTT | n.d. | 57 | 9699 | 9718 | 715 |
| 592756 | 568 | 587 | AAGCCAAACGACTTCCAGCG | 72 | 66 | 9718 | 9737 | 716 |
| 592757 | 570 | 589 | ACAAGCCAAACGACTTCCAG | 72 | 74 | 9720 | 9739 | 717 |
| 489516 | 572 | 591 | CCACAAGCCAAACGACTTCC | 85 | 82 | 9722 | 9741 | 718 |
| 592758 | 574 | 593 | CACCACAAGCCAAACGACTT | 72 | 73 | 9724 | 9743 | 719 |
| 592759 | 576 | 595 | TACACCACAAGCCAAACGAC | 74 | 68 | 9726 | 9745 | 720 |
| 592760 | 578 | 597 | ATTACACCACAAGCCAAACG | 67 | 61 | 9728 | 9747 | 721 |
| 592761 | 580 | 599 | CAATTACACCACAAGCCAAA | 64 | 56 | 9730 | 9749 | 722 |
| 150466 | 640 | 659 | GATAACAGATGAGTTAAGGG | 66 | 65 | 9790 | 9809 | 82 |
| 489521 | 642 | 661 | AGGATAACAGATGAGTTAAG | 79 | 78 | 9792 | 9811 | 723 |
| 592762 | 663 | 682 | GGATACATTTCTACAGCTAG | 91 | 87 | 9813 | 9832 | 724 |
| 592763 | 665 | 684 | CAGGATACATTTCTACAGCT | 92 | 89 | 9815 | 9834 | 725 |
| 592764 | 667 | 686 | ATCAGGATACATTTCTACAG | 88 | 83 | 9817 | 9836 | 726 |
| 592765 | 669 | 688 | TTATCAGGATACATTTCTAC | 77 | 72 | 9819 | 9838 | 727 |
| 592766 | 671 | 690 | GTTTATCAGGATACATTTCT | 90 | 89 | 9821 | 9840 | 728 |
| 592767 | 673 | 692 | ATGTTTATCAGGATACATTT | 82 | 76 | 9823 | 9842 | 729 |
| 592768 | 675 | 694 | TAATGTTTATCAGGATACAT | 80 | 79 | 9825 | 9844 | 730 |
| 592769 | 677 | 696 | TTTAATGTTTATCAGGATAC | 82 | 78 | 9827 | 9846 | 731 |
| 592770 | 679 | 698 | TGTTTAATGTTTATCAGGAT | 79 | 75 | 9829 | 9848 | 732 |
| 592771 | 681 | 700 | AGTGTTTAATGTTTATCAGG | 84 | 81 | 9831 | 9850 | 733 |
| 489526 | 692 | 711 | TTTAAGATTACAGTGTTTAA | 36 | 38 | 9842 | 9861 | 734 |
| 592772 | 694 | 713 | CTTTTAAGATTACAGTGTTT | 46 | 47 | 9844 | 9863 | 735 |
| 592773 | 696 | 715 | CACTTTTAAGATTACAGTGT | 39 | 42 | 9846 | 9865 | 736 |
| 592774 | 698 | 717 | TACACTTTTAAGATTACAGT | 21 | 24 | 9848 | 9867 | 737 |
| 592775 | 700 | 719 | ATTACACTTTTAAGATTACA | 3 | 0 | 9850 | 9869 | 738 |
| 489527 | 702 | 721 | CAATTACACTTTTAAGATTA | 0 | 0 | 9852 | 9871 | 739 |
| 150467 | 704 | 723 | CACAATTACACTTTTAAGAT | 58 | 73 | 9854 | 9873 | 83 |
| 592776 | 706 | 725 | CACACAATTACACTTTTAAG | 29 | 5 | 9856 | 9875 | 740 |
| 592777 | 708 | 727 | GTCACACAATTACACTTTTA | 59 | 49 | 9858 | 9877 | 741 |
| 592778 | 710 | 729 | AAGTCACACAATTACACTTT | 40 | 34 | 9860 | 9879 | 742 |
| 489528 | 712 | 731 | AAAAGTCACACAATTACACT | 31 | 27 | 9862 | 9881 | 743 |
| 592779 | 714 | 733 | GAAAAAGTCACACAATTACA | 21 | 7 | 9864 | 9883 | 744 |
| 592780 | 716 | 735 | CTGAAAAAGTCACACAATTA | 18 | 13 | 9866 | 9885 | 745 |
| 592781 | 718 | 737 | CTCTGAAAAAGTCACACAAT | 32 | 26 | 9868 | 9887 | 746 |
| 592782 | 720 | 739 | AACTCTGAAAAAGTCACACA | 35 | 20 | 9870 | 9889 | 747 |
| Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2 | |||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | % inhibition with RTS3898 | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | CCGTCGCCCTTCAGCACGCA | 74 | 973 | 992 | 21 |
| 489529 | 722 | 741 | GCAACTCTGAAAAAGTCACA | 41 | 9872 | 9891 | 748 |
| 592783 | 724 | 743 | AAGCAACTCTGAAAAAGTCA | 34 | 9874 | 9893 | 749 |
| 592784 | 727 | 746 | TTAAAGCAACTCTGAAAAAG | 4 | 9877 | 9896 | 750 |
| 592785 | 729 | 748 | CTTTAAAGCAACTCTGAAAA | 36 | 9879 | 9898 | 751 |
| 592786 | 731 | 750 | TACTTTAAAGCAACTCTGAA | 28 | 9881 | 9900 | 752 |
| 592787 | 733 | 752 | GGTACTTTAAAGCAACTCTG | 48 | 9883 | 9902 | 753 |
| 592788 | 735 | 754 | CAGGTACTTTAAAGCAACTC | 38 | 9885 | 9904 | 754 |
| 592789 | 737 | 756 | TACAGGTACTTTAAAGCAAC | 20 | 9887 | 9906 | 755 |
| 592790 | 739 | 758 | ACTACAGGTACTTTAAAGCA | 26 | 9889 | 9908 | 756 |
| 592791 | 741 | 760 | TCACTACAGGTACTTTAAAG | 34 | 9891 | 9910 | 757 |
| 592792 | 743 | 762 | TCTCACTACAGGTACTTTAA | 50 | 9893 | 9912 | 758 |
| 592793 | 745 | 764 | TTTCTCACTACAGGTACTTT | 36 | 9895 | 9914 | 759 |
| 592794 | 747 | 766 | AGTTTCTCACTACAGGTACT | 53 | 9897 | 9916 | 760 |
| 592795 | 749 | 768 | TCAGTTTCTCACTACAGGTA | 37 | 9899 | 9918 | 761 |
| 150470 | 751 | 770 | AATCAGTTTCTCACTACAGG | 30 | 9901 | 9920 | 84 |
| 592796 | 753 | 772 | TAAATCAGTTTCTCACTACA | 21 | 9903 | 9922 | 762 |
| 150472 | 755 | 774 | CATAAATCAGTTTCTCACTA | 37 | 9905 | 9924 | 85 |
| 592797 | 757 | 776 | ATCATAAATCAGTTTCTCAC | 35 | 9907 | 9926 | 763 |
| 592798 | 759 | 778 | TGATCATAAATCAGTTTCTC | 35 | 9909 | 9928 | 764 |
| 592799 | 761 | 780 | AGTGATCATAAATCAGTTTC | 5 | 9911 | 9930 | 765 |
| 592800 | 763 | 782 | CAAGTGATCATAAATCAGTT | 21 | 9913 | 9932 | 766 |
| 592801 | 765 | 784 | TCCAAGTGATCATAAATCAG | 41 | 9915 | 9934 | 767 |
| 592802 | 767 | 786 | CTTCCAAGTGATCATAAATC | 44 | 9917 | 9936 | 768 |
| 592803 | 769 | 788 | ATCTTCCAAGTGATCATAAA | 30 | 9919 | 9938 | 769 |
| 592804 | 771 | 790 | AAATCTTCCAAGTGATCATA | 32 | 9921 | 9940 | 770 |
| 489534 | 792 | 811 | CTGAGTTTTATAAAACTATA | 4 | 9942 | 9961 | 771 |
| 150476 | 794 | 813 | AACTGAGTTTTATAAAACTA | 9 | 9944 | 9963 | 86 |
| 592805 | 796 | 815 | TTAACTGAGTTTTATAAAAC | 14 | 9946 | 9965 | 772 |
| 592806 | 798 | 817 | TTTTAACTGAGTTTTATAAA | 3 | 9948 | 9967 | 773 |
| 592807 | 800 | 819 | CATTTTAACTGAGTTTTATA | 13 | 9950 | 9969 | 774 |
| 489535 | 802 | 821 | GACATTTTAACTGAGTTTTA | 34 | 9952 | 9971 | 775 |
| 592808 | 804 | 823 | CAGACATTTTAACTGAGTTT | 40 | 9954 | 9973 | 776 |
| 592809 | 806 | 825 | AACAGACATTTTAACTGAGT | 36 | 9956 | 9975 | 777 |
| 592810 | 808 | 827 | GAAACAGACATTTTAACTGA | 25 | 9958 | 9977 | 778 |
| 592811 | 810 | 829 | TTGAAACAGACATTTTAACT | 24 | 9960 | 9979 | 779 |
| 592812 | 835 | 854 | TTTAAGTCTGGCAAAATACA | 23 | 9985 | 10004 | 780 |
| 592813 | 837 | 856 | GATTTAAGTCTGGCAAAATA | 31 | 9987 | 10006 | 781 |
| 592814 | 839 | 858 | GTGATTTAAGTCTGGCAAAA | 41 | 9989 | 10008 | 782 |
| 592815 | 841 | 860 | CTGTGATTTAAGTCTGGCAA | 49 | 9991 | 10010 | 783 |
| 592816 | 843 | 862 | ATCTGTGATTTAAGTCTGGC | 53 | 9993 | 10012 | 784 |
| 150481 | 845 | 864 | CCATCTGTGATTTAAGTCTG | 51 | 9995 | 10014 | 87 |
| 592817 | 847 | 866 | ACCCATCTGTGATTTAAGTC | 51 | 9997 | 10016 | 785 |
| 592818 | 849 | 868 | ATACCCATCTGTGATTTAAG | 43 | 9999 | 10018 | 786 |
| 592819 | 851 | 870 | TAATACCCATCTGTGATTTA | 42 | 10001 | 10020 | 787 |
| 592820 | 870 | 889 | AAAGAAATTCTGACAAGTTT | 22 | 10020 | 10039 | 788 |
| 489542 | 872 | 891 | ACAAAGAAATTCTGACAAGT | 13 | 10022 | 10041 | 789 |
| 592821 | 874 | 893 | TGACAAAGAAATTCTGACAA | 24 | 10024 | 10043 | 790 |
| 592822 | 876 | 895 | AATGACAAAGAAATTCTGAC | 25 | 10026 | 10045 | 791 |
| 592823 | 878 | 897 | TGAATGACAAAGAAATTCTG | 6 | 10028 | 10047 | 792 |
| 592824 | 880 | 899 | CTTGAATGACAAAGAAATTC | 24 | 10030 | 10049 | 793 |
| 489543 | 882 | 901 | GGCTTGAATGACAAAGAAAT | 29 | 10032 | 10051 | 794 |
| 592825 | 884 | 903 | CAGGCTTGAATGACAAAGAA | 35 | 10034 | 10053 | 795 |
| 592826 | 886 | 905 | CACAGGCTTGAATGACAAAG | 32 | 10036 | 10055 | 796 |
| 592827 | 888 | 907 | TTCACAGGCTTGAATGACAA | 41 | 10038 | 10057 | 797 |
| 592828 | 890 | 909 | TATTCACAGGCTTGAATGAC | 30 | 10040 | 10059 | 798 |
| 150492 | 909 | 928 | AAGTGCCATACAGGGTTTTT | 32 | 10059 | 10078 | 88 |
| 592829 | 911 | 930 | ATAAGTGCCATACAGGGTTT | 0 | 10061 | 10080 | 799 |
| 150493 | 913 | 932 | TAATAAGTGCCATACAGGGT | 24 | 10063 | 10082 | 89 |
| 592830 | 915 | 934 | CATAATAAGTGCCATACAGG | 26 | 10065 | 10084 | 800 |
| 150495 | 917 | 936 | CTCATAATAAGTGCCATACA | 35 | 10067 | 10086 | 90 |
| 150496 | 919 | 938 | GCCTCATAATAAGTGCCATA | 37 | 10069 | 10088 | 91 |
| 592831 | 921 | 940 | TAGCCTCATAATAAGTGCCA | 19 | 10071 | 10090 | 801 |
| 592832 | 923 | 942 | AATAGCCTCATAATAAGTGC | 0 | 10073 | 10092 | 802 |
| 592833 | 925 | 944 | TTAATAGCCTCATAATAAGT | 19 | 10075 | 10094 | 803 |
| 150497 | 927 | 946 | TTTTAATAGCCTCATAATAA | 17 | 10077 | 10096 | 92 |
| 592834 | 929 | 948 | TCTTTTAATAGCCTCATAAT | 27 | 10079 | 10098 | 804 |
| 592835 | 931 | 950 | ATTCTTTTAATAGCCTCATA | 27 | 10081 | 10100 | 805 |
| 150498 | 933 | 952 | GGATTCTTTTAATAGCCTCA | 39 | 10083 | 10102 | 93 |
| 592836 | 935 | 954 | TTGGATTCTTTTAATAGCCT | 24 | 10085 | 10104 | 806 |
| 592837 | 937 | 956 | ATTTGGATTCTTTTAATAGC | 0 | 10087 | 10106 | 807 |
| 592838 | 939 | 958 | GAATTTGGATTCTTTTAATA | 10 | 10089 | 10108 | 808 |
| 592839 | 941 | 960 | TTGAATTTGGATTCTTTTAA | 13 | 10091 | 10110 | 809 |
| 592840 | 943 | 962 | GTTTGAATTTGGATTCTTTT | 29 | 10093 | 10112 | 810 |
| 592841 | 945 | 964 | TAGTTTGAATTTGGATTCTT | 31 | 10095 | 10114 | 811 |
| 592842 | 947 | 966 | TTTAGTTTGAATTTGGATTC | 8 | 10097 | 10116 | 812 |
| 592843 | 949 | 968 | TTTTTAGTTTGAATTTGGAT | 10 | n/a | n/a | 813 |
| 592844 | 951 | 970 | TTTTTTTAGTTTGAATTTGG | 7 | n/a | n/a | 814 |
Modified oligonucleotides were designed targeting a superoxide dismutase 1, soluble (SOD-1) nucleic acid and were tested for their effects on SOD-1 mRNA in vitro. ISIS 146143, ISIS 150438-150440, ISIS 150442, ISIS 150450, ISIS 150455-150457, ISIS 150459, ISIS 150461, ISIS 150469, ISIS 150473, ISIS 150478, ISIS 150484, ISIS 150486, ISIS 150494, ISIS 150508-150510, ISIS 333607, ISIS 333608, ISIS 333611, ISIS 333618, previously disclosed in WO 2005/040180 , were also included in this assay. The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cultured HepG2 cells at a density of 20,000 cells per well were transfected using electroporation with 5,000 nM modified oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR.
Human primer probe set RTS3898 was used to measure mRNA levels. In cases where the oligonucleotide overlapped the amplicon of the primer probe set, an alternative primer probe set, HTS90, was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. 'n.d.' indicates that inhibition levels were not measured using the particular primer probe set.
The newly designed modified oligonucleotides in the Tables below were designed as 5-10-5 MOE gapmers. The 5-10-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of ten 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five nucleosides each. Each nucleoside in the 5' wing segment and each nucleoside in the 3' wing segment has a 2'-MOE modification. The internucleoside linkages throughout each gapmer are phosphorothioate linkages. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). 'n/a' indicates that the modified oligonucleotide does not target that particular gene sequence with 100% complementarity.
Table 11
Table 12
| Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2 | |||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | % inhibition with RTS3898 | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | CCGTCGCCCTTCAGCACGCA | 64 | 973 | 992 | 21 |
| 596301 | 550 | 569 | CGTTTCCTGTCTTTGTACTT | n.d. | 9700 | 9719 | 815 |
| 596302 | 569 | 588 | CAAGCCAAACGACTTCCAGC | 54 | 9719 | 9738 | 816 |
| 596303 | 571 | 590 | CACAAGCCAAACGACTTCCA | 47 | 9721 | 9740 | 817 |
| 596304 | 573 | 592 | ACCACAAGCCAAACGACTTC | 28 | 9723 | 9742 | 818 |
| 596305 | 575 | 594 | ACACCACAAGCCAAACGACT | 49 | 9725 | 9744 | 819 |
| 596306 | 577 | 596 | TTACACCACAAGCCAAACGA | 24 | 9727 | 9746 | 820 |
| 596307 | 641 | 660 | GGATAACAGATGAGTTAAGG | 48 | 9791 | 9810 | 821 |
| 596308 | 664 | 683 | AGGATACATTTCTACAGCTA | 79 | 9814 | 9833 | 822 |
| 596309 | 666 | 685 | TCAGGATACATTTCTACAGC | 70 | 9816 | 9835 | 823 |
| 596310 | 668 | 687 | TAT CAGGATACATTT CTACA | 58 | 9818 | 9837 | 824 |
| 489524 | 672 | 691 | TGTTTATCAGGATACATTTC | 52 | 9822 | 9841 | 825 |
| 596311 | 674 | 693 | AATGTTTATCAGGATACATT | 54 | 9824 | 9843 | 826 |
| 596312 | 676 | 695 | TTAATGTTTATCAGGATACA | 34 | 9826 | 9845 | 827 |
| 596313 | 678 | 697 | GTTTAATGTTTATCAGGATA | 71 | 9828 | 9847 | 828 |
| 596314 | 680 | 699 | GTGTTTAATGTTTATCAGGA | 73 | 9830 | 9849 | 829 |
| 596315 | 693 | 712 | TTTTAAGATTACAGTGTTTA | 13 | 9843 | 9862 | 830 |
| 596316 | 695 | 714 | ACTTTTAAGATTACAGTGTT | 24 | 9845 | 9864 | 831 |
| 596317 | 697 | 716 | ACACTTTTAAGATTACAGTG | 15 | 9847 | 9866 | 832 |
| 596318 | 699 | 718 | TTACACTTTTAAGATTACAG | 0 | 9849 | 9868 | 833 |
| 596319 | 701 | 720 | AATTACACTTTTAAGATTAC | 1 | 9851 | 9870 | 834 |
| 596320 | 705 | 724 | ACACAATTACACTTTTAAGA | 0 | 9855 | 9874 | 835 |
| 596321 | 707 | 726 | TCACACAATTACACTTTTAA | 15 | 9857 | 9876 | 836 |
| 596322 | 711 | 730 | AAAGTCACACAATTACACTT | 15 | 9861 | 9880 | 837 |
| 596323 | 715 | 734 | TGAAAAAGTCACACAATTAC | 0 | 9865 | 9884 | 838 |
| 596324 | 717 | 736 | TCTGAAAAAGTCACACAATT | 5 | 9867 | 9886 | 839 |
| 596325 | 719 | 738 | ACTCTGAAAAAGTCACACAA | 21 | 9869 | 9888 | 840 |
| 596326 | 723 | 742 | AGCAACTCTGAAAAAGTCAC | 14 | 9873 | 9892 | 841 |
| 596327 | 730 | 749 | ACTTTAAAGCAACTCTGAAA | 0 | 9880 | 9899 | 842 |
| 489530 | 732 | 751 | GTACTTTAAAGCAACTCTGA | 22 | 9882 | 9901 | 843 |
| 596328 | 734 | 753 | AGGTACTTTAAAGCAACTCT | 36 | 9884 | 9903 | 844 |
| 596329 | 740 | 759 | CACTACAGGTACTTTAAAGC | 18 | 9890 | 9909 | 845 |
| 150469 | 742 | 761 | CTCACTACAGGTACTTTAAA | 25 | 9892 | 9911 | 94 |
| 596330 | 744 | 763 | TTCTCACTACAGGTACTTTA | 28 | 9894 | 9913 | 846 |
| 596331 | 746 | 765 | GTTTCTCACTACAGGTACTT | 30 | 9896 | 9915 | 847 |
| 596332 | 748 | 767 | CAGTTTCTCACTACAGGTAC | 25 | 9898 | 9917 | 848 |
| 596333 | 750 | 769 | ATCAGTTTCTCACTACAGGT | 22 | 9900 | 9919 | 849 |
| 489531 | 752 | 771 | AAATCAGTTTCTCACTACAG | 0 | 9902 | 9921 | 850 |
| 596334 | 756 | 775 | TCATAAATCAGTTTCTCACT | 21 | 9906 | 9925 | 851 |
| 596335 | 760 | 779 | GTGATCATAAATCAGTTTCT | 37 | 9910 | 9929 | 852 |
| 489532 | 762 | 781 | AAGTGATCATAAATCAGTTT | 8 | 9912 | 9931 | 853 |
| 596336 | 764 | 783 | CCAAGTGATCATAAATCAGT | 39 | 9914 | 9933 | 854 |
| 436935 | 766 | 785 | TTCCAAGTGATCATAAATCA | 18 | 9916 | 9935 | 855 |
| 596337 | 768 | 787 | TCTTCCAAGTGATCATAAAT | 12 | 9918 | 9937 | 856 |
| 150473 | 770 | 789 | AATCTTCCAAGTGATCATAA | 4 | 9920 | 9939 | 95 |
| 596338 | 795 | 814 | TAACTGAGTTTTATAAAACT | 0 | 9945 | 9964 | 857 |
| 596339 | 807 | 826 | AAACAGACATTTTAACTGAG | 4 | 9957 | 9976 | 858 |
| 596340 | 809 | 828 | TGAAACAGACATTTTAACTG | 0 | 9959 | 9978 | 859 |
| 150478 | 811 | 830 | ATTGAAACAGACATTTTAAC | 0 | 9961 | 9980 | 96 |
| 596341 | 836 | 855 | ATTTAAGTCTGGCAAAATAC | 16 | 9986 | 10005 | 860 |
| 596342 | 840 | 859 | TGTGATTTAAGTCTGGCAAA | 34 | 9990 | 10009 | 861 |
| 489539 | 842 | 861 | TCTGTGATTTAAGTCTGGCA | 44 | 9992 | 10011 | 862 |
| 596343 | 844 | 863 | CATCTGTGATTTAAGTCTGG | 29 | 9994 | 10013 | 863 |
| 596344 | 846 | 865 | CCCATCTGTGATTTAAGTCT | 41 | 9996 | 10015 | 864 |
| 596345 | 848 | 867 | TACCCATCTGTGATTTAAGT | 50 | 9998 | 10017 | 865 |
| 596346 | 850 | 869 | AATACCCATCTGTGATTTAA | 0 | 10000 | 10019 | 866 |
| 489540 | 852 | 871 | TTAATACCCATCTGTGATTT | 11 | 10002 | 10021 | 867 |
| 150484 | 871 | 890 | CAAAGAAATTCTGACAAGTT | 7 | 10021 | 10040 | 97 |
| 596347 | 873 | 892 | GACAAAGAAATTCTGACAAG | 8 | 10023 | 10042 | 868 |
| 596348 | 877 | 896 | GAATGACAAAGAAATTCTGA | 0 | 10027 | 10046 | 869 |
| 596349 | 883 | 902 | AGGCTTGAATGACAAAGAAA | 27 | 10033 | 10052 | 870 |
| 150486 | 885 | 904 | ACAGGCTTGAATGACAAAGA | 19 | 10035 | 10054 | 98 |
| 596350 | 910 | 929 | TAAGTGCCATACAGGGTTTT | 13 | 10060 | 10079 | 871 |
| 596351 | 914 | 933 | ATAATAAGTGCCATACAGGG | 18 | 10064 | 10083 | 872 |
| 150494 | 916 | 935 | TCATAATAAGTGCCATACAG | 0 | 10066 | 10085 | 99 |
| 596352 | 918 | 937 | CCTCATAATAAGTGCCATAC | 23 | 10068 | 10087 | 873 |
| 596353 | 920 | 939 | AGCCTCATAATAAGTGCCAT | 6 | 10070 | 10089 | 874 |
| 596354 | 922 | 941 | ATAGCCTCATAATAAGTGCC | 19 | 10072 | 10091 | 875 |
| 596355 | 928 | 947 | CTTTTAATAGCCTCATAATA | 0 | 10078 | 10097 | 876 |
| 596356 | 930 | 949 | TTCTTTTAATAGCCTCATAA | 5 | 10080 | 10099 | 877 |
| 596357 | 932 | 951 | GATTCTTTTAATAGCCTCAT | 4 | 10082 | 10101 | 878 |
| 596358 | 934 | 953 | TGGATTCTTTTAATAGCCTC | 13 | 10084 | 10103 | 879 |
| 596359 | 936 | 955 | TTTGGATTCTTTTAATAGCC | 14 | 10086 | 10105 | 880 |
| 596360 | 938 | 957 | AATTTGGATTCTTTTAATAG | 14 | 10088 | 10107 | 881 |
| 596361 | 940 | 959 | TGAATTTGGATTCTTTTAAT | 0 | 10090 | 10109 | 882 |
| 596362 | 946 | 965 | TTAGTTTGAATTTGGATTCT | 0 | 10096 | 10115 | 883 |
| 596363 | 948 | 967 | TTTTAGTTTGAATTTGGATT | 0 | n/a | n/a | 884 |
| 596364 | 950 | 969 | TTTTTTAGTTTGAATTTGGA | 0 | n/a | n/a | 885 |
| Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO:1 and/or 2 | ||||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | % inhibition with RTS3898 | % inhibition with HTS90 | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | CCGTCGCCCTTCAGCACGCA | 66 | n.d. | 973 | 992 | 21 |
| 596230 | 246 | 265 | CAGTCCTTTAATGCTTCCCC | 51 | 40 | 5000 | 5019 | 886 |
| 596231 | 248 | 267 | GTCAGTCCTTTAATGCTTCC | 34 | 34 | 5002 | 5021 | 887 |
| 596232 | 250 | 269 | CAGTCAGTCCTTTAATGCTT | 35 | 29 | 5004 | 5023 | 888 |
| 596233 | 252 | 271 | TTCAGTCAGTCCTTTAATGC | 24 | 21 | 5006 | 5025 | 889 |
| 596234 | 256 | 275 | GGCCTTCAGTCAGTCCTTTA | 41 | 39 | 5010 | 5029 | 890 |
| 150450 | 258 | 277 | CAGGCCTTCAGTCAGTCCTT | 56 | 51 | 5012 | 5031 | 100 |
| 596235 | 260 | 279 | TGCAGGCCTTCAGTCAGTCC | 42 | 46 | 5014 | 5033 | 891 |
| 596236 | 262 | 281 | CATGCAGGCCTTCAGTCAGT | 37 | 33 | 5016 | 5035 | 892 |
| 596237 | 278 | 297 | TCATGAACATGGAATCCATG | 24 | 19 | 5032 | 5051 | 893 |
| 596238 | 280 | 299 | ACTCATGAACATGGAATCCA | 27 | 20 | 5034 | 5053 | 894 |
| 596239 | 295 | 314 | CTGTATTATCTCCAAACTCA | 32 | 28 | 5049 | 5068 | 895 |
| 596240 | 309 | 328 | ACTGGTACAGCCTGCTGTAT | 22 | 28 | n/a | n/a | 896 |
| 596241 | 311 | 330 | GCACTGGTACAGCCTGCTGT | 31 | 24 | n/a | n/a | 897 |
| 596242 | 313 | 332 | CTGCACTGGTACAGCCTGCT | 38 | 29 | n/a | n/a | 898 |
| 596243 | 315 | 334 | ACCTGCACTGGTACAGCCTG | 46 | 48 | n/a | n/a | 899 |
| 596244 | 341 | 360 | TTTCTGGATAGAGGATTAAA | 6 | 14 | 7657 | 7676 | 900 |
| 596245 | 343 | 362 | GTTTTCTGGATAGAGGATTA | 28 | 39 | 7659 | 7678 | 901 |
| 596246 | 347 | 366 | CCGTGTTTTCTGGATAGAGG | 44 | 37 | 7663 | 7682 | 902 |
| 596247 | 349 | 368 | CACCGTGTTTTCTGGATAGA | 24 | 11 | 7665 | 7684 | 903 |
| 596248 | 351 | 370 | CCCACCGTGTTTTCTGGATA | 46 | 40 | 7667 | 7686 | 904 |
| 596249 | 353 | 372 | GGCCCACCGTGTTTTCTGGA | 46 | 41 | 7669 | 7688 | 905 |
| 596250 | 355 | 374 | TTGGCCCACCGTGTTTTCTG | 35 | 26 | 7671 | 7690 | 906 |
| 596251 | 357 | 376 | CTTTGGCCCACCGTGTTTTC | 31 | 15 | 7673 | 7692 | 907 |
| 596252 | 359 | 378 | TCCTTTGGCCCACCGTGTTT | 30 | 23 | 7675 | 7694 | 908 |
| 596253 | 383 | 402 | AAGTCTCCAACATGCCTCTC | 20 | 6 | n/a | n/a | 909 |
| 596254 | 387 | 406 | GCCCAAGTCTCCAACATGCC | 61 | 53 | 8442 | 8461 | 910 |
| 596255 | 389 | 408 | TTGCCCAAGTCTCCAACATG | 41 | 33 | 8444 | 8463 | 911 |
| 596256 | 391 | 410 | CATTGCCCAAGTCTCCAACA | 39 | 25 | 8446 | 8465 | 912 |
| 150455 | 393 | 412 | CACATTGCCCAAGTCTCCAA | 36 | 19 | 8448 | 8467 | 101 |
| 596257 | 397 | 416 | CAGTCACATTGCCCAAGTCT | 40 | 27 | 8452 | 8471 | 913 |
| 596258 | 401 | 420 | TCAGCAGTCACATTGCCCAA | 52 | 42 | 8456 | 8475 | 914 |
| 596259 | 403 | 422 | TGTCAGCAGTCACATTGCCC | 55 | 49 | 8458 | 8477 | 915 |
| 596260 | 405 | 424 | TTTGTCAGCAGTCACATTGC | 26 | 16 | 8460 | 8479 | 916 |
| 596261 | 407 | 426 | TCTTTGTCAGCAGTCACATT | 20 | 11 | 8462 | 8481 | 917 |
| 596262 | 409 | 428 | CATCTTTGTCAGCAGTCACA | 34 | 13 | 8464 | 8483 | 918 |
| 596263 | 411 | 430 | ACCATCTTTGTCAGCAGTCA | 41 | 30 | 8466 | 8485 | 919 |
| 596264 | 415 | 434 | CCACACCATCTTTGTCAGCA | 39 | 20 | 8470 | 8489 | 920 |
| 596265 | 417 | 436 | GGCCACACCATCTTTGTCAG | 23 | 5 | 8472 | 8491 | 921 |
| 150456 | 419 | 438 | TCGGCCACACCATCTTTGTC | 32 | 28 | 8474 | 8493 | 102 |
| 150457 | 421 | 440 | CATCGGCCACACCATCTTTG | 34 | 38 | 8476 | 8495 | 103 |
| 596266 | 423 | 442 | CACATCGGCCACACCATCTT | 27 | 13 | 8478 | 8497 | 922 |
| 596267 | 425 | 444 | GACACATCGGCCACACCATC | 45 | 30 | 8480 | 8499 | 923 |
| 150459 | 427 | 446 | TAGACACATCGGCCACACCA | 46 | 36 | 8482 | 8501 | 104 |
| 596268 | 429 | 448 | AATAGACACATCGGCCACAC | 30 | 25 | 8484 | 8503 | 924 |
| 596269 | 431 | 450 | TCAATAGACACATCGGCCAC | 35 | 0 | 8486 | 8505 | 925 |
| 596270 | 433 | 452 | CTTCAATAGACACATCGGCC | 39 | 16 | 8488 | 8507 | 926 |
| 596271 | 435 | 454 | ATCTTCAATAGACACATCGG | 16 | 0 | 8490 | 8509 | 927 |
| 596272 | 437 | 456 | GAATCTTCAATAGACACATC | 22 | 11 | 8492 | 8511 | 928 |
| 596273 | 439 | 458 | CAGAATCTTCAATAGACACA | 17 | 0 | 8494 | 8513 | 929 |
| 596274 | 441 | 460 | CACAGAATCTTCAATAGACA | 10 | 14 | 8496 | 8515 | 930 |
| 596275 | 443 | 462 | ATCACAGAATCTTCAATAGA | 11 | 10 | 8498 | 8517 | 931 |
| 596276 | 445 | 464 | AGATCACAGAATCTTCAATA | 14 | 29 | 8500 | 8519 | 932 |
| 596277 | 447 | 466 | TGAGATCACAGAATCTTCAA | n.d. | 30 | 8502 | 8521 | 933 |
| 596278 | 449 | 468 | AGTGAGATCACAGAATCTTC | n.d. | 30 | 8504 | 8523 | 934 |
| 596279 | 453 | 472 | TGAGAGTGAGATCACAGAAT | n.d. | 18 | 8508 | 8527 | 935 |
| 333618 | 457 | 476 | CTCCTGAGAGTGAGATCACA | n.d. | 27 | 8512 | 8531 | 105 |
| 596281 | 459 | 478 | GTCTCCTGAGAGTGAGATCA | n.d. | 23 | 8514 | 8533 | 936 |
| 596282 | 461 | 480 | TGGTCTCCTGAGAGTGAGAT | n.d. | 24 | 8516 | 8535 | 937 |
| 596283 | 463 | 482 | AATGGTCTCCTGAGAGTGAG | n.d. | 22 | 8518 | 8537 | 938 |
| 596284 | 465 | 484 | GCAATGGTCTCCTGAGAGTG | n.d. | 57 | 8520 | 8539 | 939 |
| 596285 | 467 | 486 | ATGCAATGGTCTCCTGAGAG | n.d. | 0 | 8522 | 8541 | 940 |
| 596286 | 469 | 488 | TGATGCAATGGTCTCCTGAG | n.d. | 1 | 8524 | 8543 | 941 |
| 596287 | 471 | 490 | AATGATGCAATGGTCTCCTG | n.d. | 0 | 8526 | 8545 | 942 |
| 596288 | 473 | 492 | CCAATGATGCAATGGTCTCC | n.d. | 8 | 8528 | 8547 | 943 |
| 596289 | 475 | 494 | GGCCAATGATGCAATGGTCT | n.d. | 9 | 8530 | 8549 | 944 |
| 596290 | 477 | 496 | GCGGCCAATGATGCAATGGT | n.d. | 13 | 8532 | 8551 | 945 |
| 596291 | 479 | 498 | GTGCGGCCAATGATGCAATG | n.d. | 12 | 8534 | 8553 | 946 |
| 596292 | 481 | 500 | GTGTGCGGCCAATGATGCAA | n.d. | 15 | 8536 | 8555 | 947 |
| 596293 | 483 | 502 | CAGTGTGCGGCCAATGATGC | n.d. | 0 | 8538 | 8557 | 948 |
| 596294 | 485 | 504 | ACCAGTGTGCGGCCAATGAT | n.d. | 0 | 8540 | 8559 | 949 |
| 596295 | 487 | 506 | CCACCAGTGTGCGGCCAATG | n.d. | 22 | 8542 | 8561 | 950 |
| 596296 | 489 | 508 | GACCACCAGTGTGCGGCCAA | n.d. | 16 | n/a | n/a | 951 |
| 596297 | 491 | 510 | TGGACCACCAGTGTGCGGCC | n.d. | 28 | n/a | n/a | 952 |
| 150461 | 493 | 512 | CATGGACCACCAGTGTGCGG | n.d. | 25 | n/a | n/a | 106 |
| 596298 | 495 | 514 | TTCATGGACCACCAGTGTGC | n.d. | 21 | n/a | n/a | 953 |
| 596299 | 497 | 516 | TTTTCATGGACCACCAGTGT | n.d. | 17 | n/a | n/a | 954 |
| 596300 | 499 | 518 | CTTTTTCATGGACCACCAGT | n.d. | 9 | n/a | n/a | 955 |
Modified oligonucleotides were designed targeting a superoxide dismutase 1, soluble (SOD-1) nucleic acid and were tested for their effects on SOD-1 mRNA in vitro. ISIS 333611, which was previously described in WO 2005/040180 , was included as a benchmark. ISIS 590067, ISIS 590074, ISIS 590082, ISIS 590130, ISIS 590138, and ISIS 590146, which are 5-10-5 MOE gapmers as described above in Example 1, were also included in this assay. ISIS 590512, which has a similar sequence as ISIS 333611 but with deoxy, MOE, and cEt sugar modifications, was also included in this study.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cultured HepG2 cells at a density of 20,000 cells per well were transfected using electroporation with 3,000 nM modified oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR.
Human primer probe set RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by PIBOGPEEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. 'n.d.' indicates that inhibition levels were not measured.
The newly designed modified oligonucleotides in the Tables below were designed as deoxy, MOE, and cEt gapmers. The gapmers are 17 nucleosides in length wherein each nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety. The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar. The internucleoside linkages throughout each gapmer are phosphorothioate linkages. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). 'n/a' indicates that the modified oligonucleotide does not target that particular gene sequence with 100% complementarity.
Table 13
Table 14
Table 15
Table 16
Table 17
| Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2 | ||||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | Chemistry | % inhibition | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 590434 | 1 | 17 | eeekkdddddddkkeee | 17 | 807 | 823 | 956 | |
| 590435 | 2 | 18 | eeekkdddddddkkeee | 15 | 808 | 824 | 957 | |
| 590436 | 3 | 19 | eeekkdddddddkkeee | 22 | 809 | 825 | 958 | |
| 590437 | 4 | 20 | eeekkdddddddkkeee | 14 | 810 | 826 | 959 | |
| 590438 | 35 | 51 | eeekkdddddddkkeee | 12 | 841 | 857 | 960 | |
| 590439 | 36 | 52 | eeekkdddddddkkeee | 12 | 842 | 858 | 961 | |
| 590440 | 37 | 53 | eeekkdddddddkkeee | 11 | 843 | 859 | 962 | |
| 590441 | 38 | 54 | eeekkdddddddkkeee | 5 | 844 | 860 | 963 | |
| 590442 | 76 | 92 | eeekkdddddddkkeee | 0 | 882 | 898 | 964 | |
| 590443 | 77 | 93 | eeekkdddddddkkeee | 25 | 883 | 899 | 965 | |
| 590444 | 167 | 183 | eeekkdddddddkkeee | 31 | 973 | 989 | 966 | |
| 590445 | 168 | 184 | eeekkdddddddkkeee | 28 | 974 | 990 | 967 | |
| 590512 | 169 | 185 | eeekkdddddddkkeee | 8 | 975 | 991 | 968 | |
| 590446 | 170 | 186 | eeekkdddddddkkeee | 27 | 976 | 992 | 969 | |
| 590447 | 171 | 187 | eeekkdddddddkkeee | 33 | 977 | 993 | 970 | |
| 590448 | 202 | 218 | eeekkdddddddkkeee | 34 | 1008 | 1024 | 971 | |
| 590449 | 203 | 219 | eeekkdddddddkkeee | 18 | 1009 | 1025 | 972 | |
| 590450 | 204 | 220 | eeekkdddddddkkeee | 13 | 1010 | 1026 | 973 | |
| 590451 | 205 | 221 | eeekkdddddddkkeee | 16 | 1011 | 1027 | 974 | |
| 590452 | 206 | 222 | eeekkdddddddkkeee | 14 | n/a | n/a | 975 | |
| 590453 | 207 | 223 | eeekkdddddddkkeee | 13 | n/a | n/a | 976 | |
| 590454 | 208 | 224 | eeekkdddddddkkeee | 6 | n/a | n/a | 977 | |
| 590455 | 209 | 225 | eeekkdddddddkkeee | 0 | n/a | n/a | 978 | |
| 590456 | 210 | 226 | eeekkdddddddkkeee | 0 | n/a | n/a | 979 | |
| 590457 | 211 | 227 | eeekkdddddddkkeee | n.d. | n/a | n/a | 980 | |
| 590458 | 212 | 228 | eeekkdddddddkkeee | n.d. | n/a | n/a | 981 | |
| 590459 | 213 | 229 | eeekkdddddddkkeee | n.d. | n/a | n/a | 982 | |
| 590461 | 214 | 230 | eeekkdddddddkkeee | n.d. | n/a | n/a | 983 | |
| 590462 | 215 | 231 | eeekkdddddddkkeee | n.d. | n/a | n/a | 984 | |
| 590463 | 216 | 232 | eeekkdddddddkkeee | n.d. | n/a | n/a | 985 | |
| 590464 | 217 | 233 | eeekkdddddddkkeee | n.d. | n/a | n/a | 986 | |
| 590465 | 218 | 234 | eeekkdddddddkkeee | n.d. | 4972 | 4988 | 987 | |
| 590466 | 219 | 235 | eeekkdddddddkkeee | 5 | 4973 | 4989 | 988 | |
| 590467 | 220 | 236 | eeekkdddddddkkeee | 11 | 4974 | 4990 | 989 | |
| 590468 | 221 | 237 | eeekkdddddddkkeee | 14 | 4975 | 4991 | 990 | |
| 590469 | 222 | 238 | eeekkdddddddkkeee | 12 | 4976 | 4992 | 991 | |
| 590470 | 223 | 239 | eeekkdddddddkkeee | 15 | 4977 | 4993 | 992 | |
| 590471 | 224 | 240 | eeekkdddddddkkeee | 14 | 4978 | 4994 | 993 | |
| 590472 | 225 | 241 | eeekkdddddddkkeee | 11 | 4979 | 4995 | 994 | |
| 590473 | 226 | 242 | eeekkdddddddkkeee | 8 | 4980 | 4996 | 995 | |
| 590474 | 227 | 243 | eeekkdddddddkkeee | 44 | 4981 | 4997 | 996 | |
| 590475 | 228 | 244 | eeekkdddddddkkeee | 53 | 4982 | 4998 | 997 | |
| 590476 | 229 | 245 | eeekkdddddddkkeee | 20 | 4983 | 4999 | 998 | |
| 590477 | 230 | 246 | eeekkdddddddkkeee | 12 | 4984 | 5000 | 999 | |
| 590478 | 231 | 247 | eeekkdddddddkkeee | 36 | 4985 | 5001 | 1000 | |
| 590479 | 232 | 248 | eeekkdddddddkkeee | 18 | 4986 | 5002 | 1001 | |
| 590480 | 233 | 249 | eeekkdddddddkkeee | 14 | 4987 | 5003 | 1002 | |
| 590481 | 235 | 251 | eeekkdddddddkkeee | 8 | 4989 | 5005 | 1003 | |
| 590482 | 236 | 252 | eeekkdddddddkkeee | 29 | 4990 | 5006 | 1004 | |
| 590483 | 237 | 253 | eeekkdddddddkkeee | 36 | 4991 | 5007 | 1005 | |
| 590484 | 238 | 254 | eeekkdddddddkkeee | 43 | 4992 | 5008 | 1006 | |
| 590485 | 239 | 255 | eeekkdddddddkkeee | 41 | 4993 | 5009 | 1007 | |
| 590486 | 240 | 256 | eeekkdddddddkkeee | 35 | 4994 | 5010 | 1008 | |
| 590487 | 241 | 257 | eeekkdddddddkkeee | 52 | 4995 | 5011 | 1009 | |
| 590488 | 264 | 280 | eeekkdddddddkkeee | 37 | 5018 | 5034 | 1010 | |
| 590489 | 265 | 281 | eeekkdddddddkkeee | 41 | 5019 | 5035 | 1011 | |
| 590490 | 266 | 282 | eeekkdddddddkkeee | 21 | 5020 | 5036 | 1012 | |
| 590491 | 267 | 283 | eeekkdddddddkkeee | 18 | 5021 | 5037 | 1013 | |
| 590492 | 268 | 284 | eeekkdddddddkkeee | 27 | 5022 | 5038 | 1014 | |
| 590493 | 269 | 285 | eeekkdddddddkkeee | 13 | 5023 | 5039 | 1015 | |
| 590494 | 270 | 286 | eeekkdddddddkkeee | 9 | 5024 | 5040 | 1016 | |
| 590495 | 271 | 287 | eeekkdddddddkkeee | 7 | 5025 | 5041 | 1017 | |
| 590496 | 272 | 288 | eeekkdddddddkkeee | 12 | 5026 | 5042 | 1018 | |
| 590497 | 273 | 289 | eeekkdddddddkkeee | 9 | 5027 | 5043 | 1019 | |
| 590498 | 274 | 290 | eeekkdddddddkkeee | 14 | 5028 | 5044 | 1020 | |
| 590499 | 275 | 291 | eeekkdddddddkkeee | 0 | 5029 | 5045 | 1021 | |
| 590500 | 276 | 292 | eeekkdddddddkkeee | 10 | 5030 | 5046 | 1022 | |
| 590501 | 277 | 293 | eeekkdddddddkkeee | 9 | 5031 | 5047 | 1023 | |
| 590502 | 278 | 294 | eeekkdddddddkkeee | 2 | 5032 | 5048 | 1024 | |
| 590503 | 279 | 295 | eeekkdddddddkkeee | 8 | 5033 | 5049 | 1025 | |
| 590504 | 316 | 332 | eeekkdddddddkkeee | 3 | 7632 | 7648 | 1026 | |
| 590505 | 317 | 333 | eeekkdddddddkkeee | 17 | 7633 | 7649 | 1027 | |
| 590506 | 318 | 334 | eeekkdddddddkkeee | 12 | 7634 | 7650 | 1028 | |
| 590507 | 319 | 335 | eeekkdddddddkkeee | 7 | 7635 | 7651 | 1029 | |
| 590508 | 320 | 336 | eeekkdddddddkkeee | 7 | 7636 | 7652 | 1030 | |
| 590509 | 321 | 337 | eeekkdddddddkkeee | 4 | 7637 | 7653 | 1031 | |
| 590510 | 322 | 338 | eeekkdddddddkkeee | 17 | 7638 | 7654 | 1032 | |
| 590511 | 323 | 339 | eeekkdddddddkkeee | 8 | 7639 | 7655 | 1033 | |
| Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2 | ||||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | Chemistry | % inhibition | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 590512 | 169 | 185 | eeekkdddddddkkeee | 45 | 975 | 991 | 968 | |
| 590513 | 324 | 340 | eeekkdddddddkkeee | 21 | 7640 | 7656 | 1034 | |
| 590514 | 325 | 341 | eeekkdddddddkkeee | 21 | 7641 | 7657 | 1035 | |
| 590515 | 326 | 342 | eeekkdddddddkkeee | 16 | 7642 | 7658 | 1036 | |
| 590516 | 327 | 343 | eeekkdddddddkkeee | 20 | 7643 | 7659 | 1037 | |
| 590517 | 328 | 344 | eeekkdddddddkkeee | 19 | 7644 | 7660 | 1038 | |
| 590518 | 329 | 345 | eeekkdddddddkkeee | 14 | 7645 | 7661 | 1039 | |
| 590519 | 330 | 346 | eeekkdddddddkkeee | 51 | 7646 | 7662 | 1040 | |
| 590520 | 331 | 347 | eeekkdddddddkkeee | 8 | 7647 | 7663 | 1041 | |
| 590521 | 332 | 348 | eeekkdddddddkkeee | 30 | 7648 | 7664 | 1042 | |
| 590522 | 333 | 349 | eeekkdddddddkkeee | 23 | 7649 | 7665 | 1043 | |
| 590523 | 334 | 350 | eeekkdddddddkkeee | 40 | 7650 | 7666 | 1044 | |
| 590524 | 335 | 351 | eeekkdddddddkkeee | 16 | 7651 | 7667 | 1045 | |
| 590525 | 336 | 352 | eeekkdddddddkkeee | 21 | 7652 | 7668 | 1046 | |
| 590526 | 337 | 353 | eeekkdddddddkkeee | 9 | 7653 | 7669 | 1047 | |
| 590527 | 338 | 354 | eeekkdddddddkkeee | 8 | 7654 | 7670 | 1048 | |
| 590528 | 339 | 355 | eeekkdddddddkkeee | 14 | 7655 | 7671 | 1049 | |
| 590530 | 340 | 356 | eeekkdddddddkkeee | 23 | 7656 | 7672 | 1050 | |
| 590531 | 341 | 357 | eeekkdddddddkkeee | 26 | 7657 | 7673 | 1051 | |
| 590532 | 342 | 358 | eeekkdddddddkkeee | 25 | 7658 | 7674 | 1052 | |
| 590533 | 360 | 376 | eeekkdddddddkkeee | 41 | 7676 | 7692 | 1053 | |
| 590534 | 361 | 377 | eeekkdddddddkkeee | 46 | 7677 | 7693 | 1054 | |
| 590535 | 362 | 378 | eeekkdddddddkkeee | 39 | 7678 | 7694 | 1055 | |
| 590536 | 363 | 379 | eeekkdddddddkkeee | n.d. | 7679 | 7695 | 1056 | |
| 590537 | 364 | 380 | eeekkdddddddkkeee | n.d. | 7680 | 7696 | 1057 | |
| 590538 | 365 | 381 | eeekkdddddddkkeee | n.d. | 7681 | 7697 | 1058 | |
| 590539 | 366 | 382 | eeekkdddddddkkeee | n.d. | 7682 | 7698 | 1059 | |
| 590540 | 367 | 383 | eeekkdddddddkkeee | n.d. | 7683 | 7699 | 1060 | |
| 590541 | 368 | 384 | eeekkdddddddkkeee | n.d. | 7684 | 7700 | 1061 | |
| 590542 | 369 | 385 | eeekkdddddddkkeee | n.d. | 7685 | 7701 | 1062 | |
| 590543 | 370 | 386 | eeekkdddddddkkeee | n.d. | 7686 | 7702 | 1063 | |
| 590544 | 371 | 387 | eeekkdddddddkkeee | 2 | 7687 | 7703 | 1064 | |
| 590545 | 374 | 390 | eeekkdddddddkkeee | 6 | n/a | n/a | 1065 | |
| 590546 | 375 | 391 | eeekkdddddddkkeee | 0 | n/a | n/a | 1066 | |
| 590547 | 376 | 392 | eeekkdddddddkkeee | 14 | n/a | n/a | 1067 | |
| 590548 | 377 | 393 | eeekkdddddddkkeee | 0 | n/a | n/a | 1068 | |
| 590549 | 378 | 394 | eeekkdddddddkkeee | 13 | n/a | n/a | 1069 | |
| 590550 | 379 | 395 | eeekkdddddddkkeee | 3 | n/a | n/a | 1070 | |
| 590551 | 380 | 396 | eeekkdddddddkkeee | 0 | n/a | n/a | 1071 | |
| 590552 | 381 | 397 | eeekkdddddddkkeee | 0 | n/a | n/a | 1072 | |
| 590553 | 382 | 398 | eeekkdddddddkkeee | 5 | n/a | n/a | 1073 | |
| 590554 | 383 | 399 | eeekkdddddddkkeee | 10 | n/a | n/a | 1074 | |
| 590555 | 384 | 400 | eeekkdddddddkkeee | 8 | n/a | n/a | 1075 | |
| 590556 | 402 | 418 | eeekkdddddddkkeee | 18 | 8457 | 8473 | 1076 | |
| 590557 | 403 | 419 | eeekkdddddddkkeee | 7 | 8458 | 8474 | 1077 | |
| 590558 | 429 | 445 | eeekkdddddddkkeee | 21 | 8484 | 8500 | 1078 | |
| 590559 | 436 | 452 | eeekkdddddddkkeee | 9 | 8491 | 8507 | 1079 | |
| 590560 | 449 | 465 | eeekkdddddddkkeee | 13 | 8504 | 8520 | 1080 | |
| 590561 | 501 | 517 | eeekkdddddddkkeee | 76 | n/a | n/a | 1081 | |
| 590562 | 502 | 518 | eeekkdddddddkkeee | 87 | n/a | n/a | 1082 | |
| 590563 | 503 | 519 | eeekkdddddddkkeee | 71 | n/a | n/a | 1083 | |
| 590564 | 504 | 520 | eeekkdddddddkkeee | 51 | n/a | n/a | 1084 | |
| 590565 | 505 | 521 | eeekkdddddddkkeee | 65 | 9655 | 9671 | 1085 | |
| 590566 | 506 | 522 | eeekkdddddddkkeee | 55 | 9656 | 9672 | 1086 | |
| 590567 | 507 | 523 | eeekkdddddddkkeee | 42 | 9657 | 9673 | 1087 | |
| 590568 | 508 | 524 | eeekkdddddddkkeee | 70 | 9658 | 9674 | 1088 | |
| 590569 | 509 | 525 | eeekkdddddddkkeee | 71 | 9659 | 9675 | 1089 | |
| 590570 | 510 | 526 | eeekkdddddddkkeee | 74 | 9660 | 9676 | 1090 | |
| 590571 | 511 | 527 | eeekkdddddddkkeee | 76 | 9661 | 9677 | 1091 | |
| 590572 | 512 | 528 | eeekkdddddddkkeee | 83 | 9662 | 9678 | 1092 | |
| 590573 | 513 | 529 | eeekkdddddddkkeee | 42 | 9663 | 9679 | 1093 | |
| 590574 | 514 | 530 | eeekkdddddddkkeee | 50 | 9664 | 9680 | 1094 | |
| 590575 | 515 | 531 | eeekkdddddddkkeee | 72 | 9665 | 9681 | 1095 | |
| 590576 | 516 | 532 | eeekkdddddddkkeee | 93 | 9666 | 9682 | 1096 | |
| 590577 | 517 | 533 | eeekkdddddddkkeee | 90 | 9667 | 9683 | 1097 | |
| 590578 | 518 | 534 | eeekkdddddddkkeee | 92 | 9668 | 9684 | 1098 | |
| 590579 | 524 | 540 | eeekkdddddddkkeee | 91 | 9674 | 9690 | 1099 | |
| 590580 | 525 | 541 | eeekkdddddddkkeee | 88 | 9675 | 9691 | 1100 | |
| 590581 | 526 | 542 | eeekkdddddddkkeee | 87 | 9676 | 9692 | 1101 | |
| 590582 | 527 | 543 | eeekkdddddddkkeee | 78 | 9677 | 9693 | 1102 | |
| 590583 | 528 | 544 | eeekkdddddddkkeee | 63 | 9678 | 9694 | 1103 | |
| 590584 | 529 | 545 | eeekkdddddddkkeee | 73 | 9679 | 9695 | 1104 | |
| 590585 | 530 | 546 | eeekkdddddddkkeee | 57 | 9680 | 9696 | 1105 | |
| 590586 | 531 | 547 | eeekkdddddddkkeee | 33 | 9681 | 9697 | 1106 | |
| 590587 | 533 | 549 | eeekkdddddddkkeee | 31 | 9683 | 9699 | 1107 | |
| 590588 | 536 | 552 | eeekkdddddddkkeee | 11 | 9686 | 9702 | 1108 | |
| 590589 | 537 | 553 | eeekkdddddddkkeee | 15 | 9687 | 9703 | 1109 | |
| 590590 | 538 | 554 | eeekkdddddddkkeee | 18 | 9688 | 9704 | 1110 | |
| Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2 | ||||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | Chemistry | % inhibition | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 590512 | 169 | 185 | eeekkdddddddkkeee | 21 | 975 | 991 | 968 | |
| 590591 | 582 | 598 | eeekkdddddddkkeee | 21 | 9732 | 9748 | 1111 | |
| 590592 | 583 | 599 | eeekkdddddddkkeee | 33 | 9733 | 9749 | 1112 | |
| 590593 | 584 | 600 | eeekkdddddddkkeee | 29 | 9734 | 9750 | 1113 | |
| 590594 | 585 | 601 | eeekkdddddddkkeee | 29 | 9735 | 9751 | 1114 | |
| 590595 | 588 | 604 | eeekkdddddddkkeee | 3 | 9738 | 9754 | 1115 | |
| 590596 | 589 | 605 | eeekkdddddddkkeee | 12 | 9739 | 9755 | 1116 | |
| 590597 | 590 | 606 | eeekkdddddddkkeee | 19 | 9740 | 9756 | 1117 | |
| 590598 | 591 | 607 | eeekkdddddddkkeee | 9 | 9741 | 9757 | 1118 | |
| 590599 | 592 | 608 | eeekkdddddddkkeee | 18 | 9742 | 9758 | 1119 | |
| 590600 | 593 | 609 | eeekkdddddddkkeee | 20 | 9743 | 9759 | 1120 | |
| 590601 | 594 | 610 | eeekkdddddddkkeee | 26 | 9744 | 9760 | 1121 | |
| 590602 | 595 | 611 | eeekkdddddddkkeee | 19 | 9745 | 9761 | 1122 | |
| 590603 | 596 | 612 | eeekkdddddddkkeee | 3 | 9746 | 9762 | 1123 | |
| 590604 | 597 | 613 | eeekkdddddddkkeee | 15 | 9747 | 9763 | 1124 | |
| 590605 | 598 | 614 | eeekkdddddddkkeee | 20 | 9748 | 9764 | 1125 | |
| 590606 | 599 | 615 | eeekkdddddddkkeee | 18 | 9749 | 9765 | 1126 | |
| 590607 | 600 | 616 | eeekkdddddddkkeee | 21 | 9750 | 9766 | 1127 | |
| 590608 | 601 | 617 | eeekkdddddddkkeee | 28 | 9751 | 9767 | 1128 | |
| 590609 | 602 | 618 | eeekkdddddddkkeee | 30 | 9752 | 9768 | 1129 | |
| 590610 | 603 | 619 | eeekkdddddddkkeee | 14 | 9753 | 9769 | 1130 | |
| 590611 | 604 | 620 | eeekkdddddddkkeee | 15 | 9754 | 9770 | 1131 | |
| 590612 | 607 | 623 | eeekkdddddddkkeee | 2 | 9757 | 9773 | 1132 | |
| 590613 | 608 | 624 | eeekkdddddddkkeee | n.d. | 9758 | 9774 | 1133 | |
| 590614 | 609 | 625 | eeekkdddddddkkeee | n.d. | 9759 | 9775 | 1134 | |
| 590615 | 610 | 626 | eeekkdddddddkkeee | n.d. | 9760 | 9776 | 1135 | |
| 590616 | 611 | 627 | eeekkdddddddkkeee | n.d. | 9761 | 9777 | 1136 | |
| 590617 | 612 | 628 | eeekkdddddddkkeee | n.d. | 9762 | 9778 | 1137 | |
| 590618 | 613 | 629 | eeekkdddddddkkeee | n.d. | 9763 | 9779 | 1138 | |
| 590619 | 614 | 630 | eeekkdddddddkkeee | n.d. | 9764 | 9780 | 1139 | |
| 590620 | 615 | 631 | eeekkdddddddkkeee | n.d. | 9765 | 9781 | 1140 | |
| 590621 | 616 | 632 | eeekkdddddddkkeee | 7 | 9766 | 9782 | 1141 | |
| 590622 | 617 | 633 | eeekkdddddddkkeee | 19 | 9767 | 9783 | 1142 | |
| 590623 | 618 | 634 | eeekkdddddddkkeee | 39 | 9768 | 9784 | 1143 | |
| 590624 | 619 | 635 | eeekkdddddddkkeee | 53 | 9769 | 9785 | 1144 | |
| 590625 | 620 | 636 | eeekkdddddddkkeee | 57 | 9770 | 9786 | 1145 | |
| 590626 | 621 | 637 | eeekkdddddddkkeee | 76 | 9771 | 9787 | 1146 | |
| 590627 | 622 | 638 | eeekkdddddddkkeee | 58 | 9772 | 9788 | 1147 | |
| 590628 | 623 | 639 | eeekkdddddddkkeee | 43 | 9773 | 9789 | 1148 | |
| 590629 | 624 | 640 | eeekkdddddddkkeee | 24 | 9774 | 9790 | 1149 | |
| 590630 | 625 | 641 | eeekkdddddddkkeee | 24 | 9775 | 9791 | 1150 | |
| 590631 | 643 | 659 | eeekkdddddddkkeee | 11 | 9793 | 9809 | 1151 | |
| 590632 | 644 | 660 | eeekkdddddddkkeee | 32 | 9794 | 9810 | 1152 | |
| 590633 | 645 | 661 | eeekkdddddddkkeee | 45 | 9795 | 9811 | 1153 | |
| 590634 | 646 | 662 | eeekkdddddddkkeee | 65 | 9796 | 9812 | 1154 | |
| 590635 | 647 | 663 | eeekkdddddddkkeee | 58 | 9797 | 9813 | 1155 | |
| 590636 | 648 | 664 | eeekkdddddddkkeee | 45 | 9798 | 9814 | 1156 | |
| 590637 | 649 | 665 | eeekkdddddddkkeee | 34 | 9799 | 9815 | 1157 | |
| 590638 | 650 | 666 | eeekkdddddddkkeee | 39 | 9800 | 9816 | 1158 | |
| 590639 | 651 | 667 | eeekkdddddddkkeee | 10 | 9801 | 9817 | 1159 | |
| 590640 | 652 | 668 | eeekkdddddddkkeee | 15 | 9802 | 9818 | 1160 | |
| 590641 | 653 | 669 | eeekkdddddddkkeee | 21 | 9803 | 9819 | 1161 | |
| 590642 | 654 | 670 | eeekkdddddddkkeee | 20 | 9804 | 9820 | 1162 | |
| 590643 | 655 | 671 | eeekkdddddddkkeee | 40 | 9805 | 9821 | 1163 | |
| 590644 | 656 | 672 | eeekkdddddddkkeee | 55 | 9806 | 9822 | 1164 | |
| 590645 | 657 | 673 | eeekkdddddddkkeee | 51 | 9807 | 9823 | 1165 | |
| 590646 | 658 | 674 | eeekkdddddddkkeee | 31 | 9808 | 9824 | 1166 | |
| 590647 | 659 | 675 | eeekkdddddddkkeee | 38 | 9809 | 9825 | 1167 | |
| 590648 | 660 | 676 | eeekkdddddddkkeee | 45 | 9810 | 9826 | 1168 | |
| 590649 | 661 | 677 | eeekkdddddddkkeee | 34 | 9811 | 9827 | 1169 | |
| 590650 | 664 | 680 | eeekkdddddddkkeee | 57 | 9814 | 9830 | 1170 | |
| 590651 | 665 | 681 | eeekkdddddddkkeee | 40 | 9815 | 9831 | 1171 | |
| 590652 | 683 | 699 | eeekkdddddddkkeee | 37 | 9833 | 9849 | 1172 | |
| 590653 | 684 | 700 | eeekkdddddddkkeee | 67 | 9834 | 9850 | 1173 | |
| 590654 | 685 | 701 | eeekkdddddddkkeee | 54 | 9835 | 9851 | 1174 | |
| 590655 | 686 | 702 | eeekkdddddddkkeee | 56 | 9836 | 9852 | 1175 | |
| 590656 | 687 | 703 | eeekkdddddddkkeee | 30 | 9837 | 9853 | 1176 | |
| 590657 | 688 | 704 | eeekkdddddddkkeee | 18 | 9838 | 9854 | 1177 | |
| 590658 | 689 | 705 | eeekkdddddddkkeee | 24 | 9839 | 9855 | 1178 | |
| 590659 | 690 | 706 | eeekkdddddddkkeee | 10 | 9840 | 9856 | 1179 | |
| 590660 | 691 | 707 | eeekkdddddddkkeee | 45 | 9841 | 9857 | 1180 | |
| 590661 | 692 | 708 | eeekkdddddddkkeee | 34 | 9842 | 9858 | 1181 | |
| 590662 | 693 | 709 | eeekkdddddddkkeee | 54 | 9843 | 9859 | 1182 | |
| 590663 | 694 | 710 | eeekkdddddddkkeee | 54 | 9844 | 9860 | 1183 | |
| 590664 | 772 | 788 | eeekkdddddddkkeee | 7 | 9922 | 9938 | 1184 | |
| 590665 | 773 | 789 | eeekkdddddddkkeee | 23 | 9923 | 9939 | 1185 | |
| 590666 | 774 | 790 | eeekkdddddddkkeee | 4 | 9924 | 9940 | 1186 | |
| 590667 | 775 | 791 | eeekkdddddddkkeee | 18 | 9925 | 9941 | 1187 | |
| Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2 | ||||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | Chemistry | % inhibition | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 590512 | 169 | 185 | eeekkdddddddkkeee | 16 | 975 | 991 | 968 | |
| 590668 | 777 | 793 | eeekkdddddddkkeee | 17 | 9927 | 9943 | 1188 | |
| 590669 | 778 | 794 | eeekkdddddddkkeee | 15 | 9928 | 9944 | 1189 | |
| 590670 | 779 | 795 | eeekkdddddddkkeee | 11 | 9929 | 9945 | 1190 | |
| 590671 | 780 | 796 | eeekkdddddddkkeee | 13 | 9930 | 9946 | 1191 | |
| 590672 | 781 | 797 | eeekkdddddddkkeee | 10 | 9931 | 9947 | 1192 | |
| 590673 | 782 | 798 | eeekkdddddddkkeee | 28 | 9932 | 9948 | 1193 | |
| 590674 | 783 | 799 | eeekkdddddddkkeee | 26 | 9933 | 9949 | 1194 | |
| 590675 | 786 | 802 | eeekkdddddddkkeee | 14 | 9936 | 9952 | 1195 | |
| 590676 | 791 | 807 | eeekkdddddddkkeee | 22 | 9941 | 9957 | 1196 | |
| 590677 | 793 | 809 | eeekkdddddddkkeee | 6 | 9943 | 9959 | 1197 | |
| 590678 | 814 | 830 | eeekkdddddddkkeee | 22 | 9964 | 9980 | 1198 | |
| 590679 | 815 | 831 | eeekkdddddddkkeee | 11 | 9965 | 9981 | 1199 | |
| 590680 | 816 | 832 | eeekkdddddddkkeee | 10 | 9966 | 9982 | 1200 | |
| 590681 | 817 | 833 | eeekkdddddddkkeee | 23 | 9967 | 9983 | 1201 | |
| 590682 | 818 | 834 | eeekkdddddddkkeee | 11 | 9968 | 9984 | 1202 | |
| 590683 | 819 | 835 | eeekkdddddddkkeee | 21 | 9969 | 9985 | 1203 | |
| 590684 | 820 | 836 | eeekkdddddddkkeee | 14 | 9970 | 9986 | 1204 | |
| 590685 | 821 | 837 | eeekkdddddddkkeee | 14 | 9971 | 9987 | 1205 | |
| 590686 | 822 | 838 | eeekkdddddddkkeee | 9 | 9972 | 9988 | 1206 | |
| 590687 | 823 | 839 | eeekkdddddddkkeee | 14 | 9973 | 9989 | 1207 | |
| 590688 | 824 | 840 | eeekkdddddddkkeee | 6 | 9974 | 9990 | 1208 | |
| 590689 | 825 | 841 | eeekkdddddddkkeee | 2 | 9975 | 9991 | 1209 | |
| 590690 | 826 | 842 | eeekkdddddddkkeee | n.d. | 9976 | 9992 | 1210 | |
| 590691 | 827 | 843 | eeekkdddddddkkeee | n.d. | 9977 | 9993 | 1211 | |
| 590692 | 828 | 844 | eeekkdddddddkkeee | n.d. | 9978 | 9994 | 1212 | |
| 590693 | 829 | 845 | eeekkdddddddkkeee | n.d. | 9979 | 9995 | 1213 | |
| 590694 | 830 | 846 | eeekkdddddddkkeee | n.d. | 9980 | 9996 | 1214 | |
| 590695 | 831 | 847 | eeekkdddddddkkeee | n.d. | 9981 | 9997 | 1215 | |
| 590696 | 832 | 848 | eeekkdddddddkkeee | n.d. | 9982 | 9998 | 1216 | |
| 590697 | 833 | 849 | eeekkdddddddkkeee | n.d. | 9983 | 9999 | 1217 | |
| 590698 | 834 | 850 | eeekkdddddddkkeee | 1 | 9984 | 10000 | 1218 | |
| 590699 | 835 | 851 | eeekkdddddddkkeee | 10 | 9985 | 10001 | 1219 | |
| 590700 | 836 | 852 | eeekkdddddddkkeee | 4 | 9986 | 10002 | 1220 | |
| 590701 | 837 | 853 | eeekkdddddddkkeee | 2 | 9987 | 10003 | 1221 | |
| 590702 | 853 | 869 | eeekkdddddddkkeee | 7 | 10003 | 10019 | 1222 | |
| 590703 | 854 | 870 | eeekkdddddddkkeee | 4 | 10004 | 10020 | 1223 | |
| 590704 | 855 | 871 | eeekkdddddddkkeee | 2 | 10005 | 10021 | 1224 | |
| 590705 | 856 | 872 | eeekkdddddddkkeee | 0 | 10006 | 10022 | 1225 | |
| 590706 | 857 | 873 | eeekkdddddddkkeee | 17 | 10007 | 10023 | 1226 | |
| 590707 | 858 | 874 | eeekkdddddddkkeee | 10 | 10008 | 10024 | 1227 | |
| 590708 | 859 | 875 | eeekkdddddddkkeee | 12 | 10009 | 10025 | 1228 | |
| 590709 | 860 | 876 | eeekkdddddddkkeee | 37 | 10010 | 10026 | 1229 | |
| 590710 | 861 | 877 | eeekkdddddddkkeee | 23 | 10011 | 10027 | 1230 | |
| 590711 | 862 | 878 | eeekkdddddddkkeee | 24 | 10012 | 10028 | 1231 | |
| 590712 | 863 | 879 | eeekkdddddddkkeee | 27 | 10013 | 10029 | 1232 | |
| 590713 | 864 | 880 | eeekkdddddddkkeee | 10 | 10014 | 10030 | 1233 | |
| 590714 | 865 | 881 | eeekkdddddddkkeee | 0 | 10015 | 10031 | 1234 | |
| 590715 | 866 | 882 | eeekkdddddddkkeee | 6 | 10016 | 10032 | 1235 | |
| 590716 | 867 | 883 | eeekkdddddddkkeee | 9 | 10017 | 10033 | 1236 | |
| 590717 | 868 | 884 | eeekkdddddddkkeee | 15 | 10018 | 10034 | 1237 | |
| 590718 | 869 | 885 | eeekkdddddddkkeee | 21 | 10019 | 10035 | 1238 | |
| 590719 | 870 | 886 | eeekkdddddddkkeee | 14 | 10020 | 10036 | 1239 | |
| 590720 | 871 | 887 | eeekkdddddddkkeee | 8 | 10021 | 10037 | 1240 | |
| 590721 | 872 | 888 | eeekkdddddddkkeee | 18 | 10022 | 10038 | 1241 | |
| 590722 | 891 | 907 | eeekkdddddddkkeee | 9 | 10041 | 10057 | 1242 | |
| 590723 | 892 | 908 | eeekkdddddddkkeee | 11 | 10042 | 10058 | 1243 | |
| 590724 | 893 | 909 | eeekkdddddddkkeee | 0 | 10043 | 10059 | 1244 | |
| 590725 | 894 | 910 | eeekkdddddddkkeee | 10 | 10044 | 10060 | 1245 | |
| 590726 | 895 | 911 | eeekkdddddddkkeee | 29 | 10045 | 10061 | 1246 | |
| 590727 | 896 | 912 | eeekkdddddddkkeee | 28 | 10046 | 10062 | 1247 | |
| 590728 | 897 | 913 | eeekkdddddddkkeee | 31 | 10047 | 10063 | 1248 | |
| 590729 | 898 | 914 | eeekkdddddddkkeee | 10 | 10048 | 10064 | 1249 | |
| 590731 | 899 | 915 | eeekkdddddddkkeee | 22 | 10049 | 10065 | 1250 | |
| 590732 | 900 | 916 | eeekkdddddddkkeee | 17 | 10050 | 10066 | 1251 | |
| 590733 | 901 | 917 | eeekkdddddddkkeee | 24 | 10051 | 10067 | 1252 | |
| 590734 | 902 | 918 | eeekkdddddddkkeee | 17 | 10052 | 10068 | 1253 | |
| 590735 | 903 | 919 | eeekkdddddddkkeee | 10 | 10053 | 10069 | 1254 | |
| 590736 | 904 | 920 | eeekkdddddddkkeee | 11 | 10054 | 10070 | 1255 | |
| 590737 | 905 | 921 | eeekkdddddddkkeee | 3 | 10055 | 10071 | 1256 | |
| 590738 | 906 | 922 | eeekkdddddddkkeee | 0 | 10056 | 10072 | 1257 | |
| 590739 | 907 | 923 | eeekkdddddddkkeee | 1 | 10057 | 10073 | 1258 | |
| 590740 | 908 | 924 | eeekkdddddddkkeee | 11 | 10058 | 10074 | 1259 | |
| 590741 | 909 | 925 | eeekkdddddddkkeee | 9 | 10059 | 10075 | 1260 | |
| 590742 | 910 | 926 | eeekkdddddddkkeee | 7 | 10060 | 10076 | 1261 | |
| 590743 | 911 | 927 | eeekkdddddddkkeee | 9 | 10061 | 10077 | 1262 | |
| 590744 | 938 | 954 | eeekkdddddddkkeee | 8 | 10088 | 10104 | 1263 | |
| 590745 | 951 | 967 | eeekkdddddddkkeee | 12 | n/a | n/a | 1264 | |
| Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2 | ||||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | Chemistry | % inhibition | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | eeeeeddddddddddeeeee | 66 | 973 | 992 | 21 | |
| 590067 | 202 | 221 | eeeeeddddddddddeeeee | 53 | 1008 | 1027 | 120 | |
| 590074 | 209 | 228 | eeeeeddddddddddeeeee | 30 | n/a | n/a | 127 | |
| 590457 | 211 | 227 | eeekkdddddddkkeee | 14 | n/a | n/a | 980 | |
| 590458 | 212 | 228 | eeekkdddddddkkeee | 22 | n/a | n/a | 981 | |
| 590459 | 213 | 229 | eeekkdddddddkkeee | 15 | n/a | n/a | 982 | |
| 590461 | 214 | 230 | eeekkdddddddkkeee | 28 | n/a | n/a | 983 | |
| 590462 | 215 | 231 | eeekkdddddddkkeee | 37 | n/a | n/a | 984 | |
| 590463 | 216 | 232 | eeekkdddddddkkeee | 18 | n/a | n/a | 985 | |
| 590082 | 217 | 236 | eeeeeddddddddddeeeee | 50 | n/a | n/a | 135 | |
| 590464 | 217 | 233 | eeekkdddddddkkeee | 33 | n/a | n/a | 986 | |
| 590465 | 218 | 234 | eeekkdddddddkkeee | 18 | 4972 | 4988 | 987 | |
| 590130 | 363 | 382 | eeeeeddddddddddeeeee | 30 | 7679 | 7698 | 194 | |
| 590536 | 363 | 379 | eeekkdddddddkkeee | 51 | 7679 | 7695 | 1056 | |
| 590537 | 364 | 380 | eeekkdddddddkkeee | 38 | 7680 | 7696 | 1057 | |
| 590538 | 365 | 381 | eeekkdddddddkkeee | 27 | 7681 | 7697 | 1058 | |
| 590539 | 366 | 382 | eeekkdddddddkkeee | 26 | 7682 | 7698 | 1059 | |
| 590540 | 367 | 383 | eeekkdddddddkkeee | 35 | 7683 | 7699 | 1060 | |
| 590541 | 368 | 384 | eeekkdddddddkkeee | 15 | 7684 | 7700 | 1061 | |
| 590542 | 369 | 385 | eeekkdddddddkkeee | 26 | 7685 | 7701 | 1062 | |
| 590543 | 370 | 386 | eeekkdddddddkkeee | 14 | 7686 | 7702 | 1063 | |
| 590138 | 371 | 390 | eeeeeddddddddddeeeee | 32 | n/a | n/a | 202 | |
| 590146 | 505 | 524 | eeeeeddddddddddeeeee | 46 | 9655 | 9674 | 211 | |
| 590613 | 608 | 624 | eeekkdddddddkkeee | 19 | 9758 | 9774 | 1133 | |
| 590614 | 609 | 625 | eeekkdddddddkkeee | 36 | 9759 | 9775 | 1134 | |
| 590615 | 610 | 626 | eeekkdddddddkkeee | 32 | 9760 | 9776 | 1135 | |
| 590616 | 611 | 627 | eeekkdddddddkkeee | 42 | 9761 | 9777 | 1136 | |
| 590617 | 612 | 628 | eeekkdddddddkkeee | 16 | 9762 | 9778 | 1137 | |
| 590618 | 613 | 629 | eeekkdddddddkkeee | 30 | 9763 | 9779 | 1138 | |
| 590619 | 614 | 630 | eeekkdddddddkkeee | 30 | 9764 | 9780 | 1139 | |
| 590620 | 615 | 631 | eeekkdddddddkkeee | 40 | 9765 | 9781 | 1140 | |
| 590690 | 826 | 842 | eeekkdddddddkkeee | 28 | 9976 | 9992 | 1210 | |
| 590691 | 827 | 843 | eeekkdddddddkkeee | 23 | 9977 | 9993 | 1211 | |
| 590692 | 828 | 844 | eeekkdddddddkkeee | 43 | 9978 | 9994 | 1212 | |
| 590693 | 829 | 845 | eeekkdddddddkkeee | 39 | 9979 | 9995 | 1213 | |
| 590694 | 830 | 846 | eeekkdddddddkkeee | 26 | 9980 | 9996 | 1214 | |
| 590695 | 831 | 847 | eeekkdddddddkkeee | 18 | 9981 | 9997 | 1215 | |
| 590696 | 832 | 848 | eeekkdddddddkkeee | 0 | 9982 | 9998 | 1216 | |
| 590697 | 833 | 849 | eeekkdddddddkkeee | 24 | 9983 | 9999 | 1217 | |
Modified oligonucleotides were designed targeting a superoxide dismutase 1, soluble (SOD-1) nucleic acid and were tested for their effects on SOD-1 mRNA in vitro. ISIS 333611, a 5-10-5 MOE gapmer which was previously described in WO 2005/040180 , was included as a benchmark.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cultured HepG2 cells at a density of 20,000 cells per well were transfected using electroporation with 4,000 nM modified oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR.
Human primer probe set RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. 'n.d.' indicates that inhibition levels were not measured.
The newly designed modified oligonucleotides in the Tables below were designed as deoxy, MOE, and cEt gapmers or 5-10-5 gapmers. The 5-10-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of ten 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' direction comprising five nucleosides each. Each nucleoside in the 5' wing segment and each nucleoside in the 3' wing segment has a 2'-MOE modification. The deoxy, MOE and cEt oligonucleotides are 17 nucleosides in length wherein the nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety. The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar. The internucleoside linkages throughout each gapmer are phosphorothioate linkages. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). 'n/a' indicates that the modified oligonucleotide does not target that particular gene sequence with 100% complementarity.
Table 18
Table 19
Table 20
| Percent inhibition of SOD-1 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2 | |||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | % inhibition | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 596168 | 3 | 22 | CTCGCCCACTCTGGCCCCAA | 45 | 809 | 828 | 1265 |
| 596169 | 5 | 24 | GCCTCGCCCACTCTGGCCCC | 37 | 811 | 830 | 1266 |
| 596170 | 7 | 26 | GCGCCTCGCCCACTCTGGCC | 33 | 813 | 832 | 1267 |
| 596171 | 9 | 28 | CCGCGCCTCGCCCACTCTGG | 27 | 815 | 834 | 1268 |
| 596172 | 11 | 30 | CTCCGCGCCTCGCCCACTCT | 40 | 817 | 836 | 1269 |
| 596173 | 13 | 32 | ACCTCCGCGCCTCGCCCACT | 77 | 819 | 838 | 1270 |
| 596174 | 15 | 34 | AGACCTCCGCGCCTCGCCCA | 72 | 821 | 840 | 1271 |
| 596175 | 17 | 36 | CCAGACCTCCGCGCCTCGCC | 46 | 823 | 842 | 1272 |
| 596176 | 19 | 38 | GGCCAGACCTCCGCGCCTCG | 49 | 825 | 844 | 1273 |
| 150508 | 21 | 40 | TAGGCCAGACCTCCGCGCCT | 33 | 827 | 846 | 107 |
| 596177 | 23 | 42 | TATAGGCCAGACCTCCGCGC | 40 | 829 | 848 | 1274 |
| 596178 | 25 | 44 | TTTATAGGCCAGACCTCCGC | 69 | 831 | 850 | 1275 |
| 150509 | 27 | 46 | ACTTTATAGGCCAGACCTCC | 64 | 833 | 852 | 108 |
| 596179 | 31 | 50 | GACTACTTTATAGGCCAGAC | 74 | 837 | 856 | 1276 |
| 596180 | 33 | 52 | GCGACTACTTTATAGGCCAG | 19 | 839 | 858 | 1277 |
| 596181 | 37 | 56 | CTCCGCGACTACTTTATAGG | 27 | 843 | 862 | 1278 |
| 596182 | 39 | 58 | GTCTCCGCGACTACTTTATA | 22 | 845 | 864 | 1279 |
| 596183 | 41 | 60 | CCGTCTCCGCGACTACTTTA | 20 | 847 | 866 | 1280 |
| 596184 | 43 | 62 | CCCCGTCTCCGCGACTACTT | 16 | 849 | 868 | 1281 |
| 596185 | 45 | 64 | CACCCCGTCTCCGCGACTAC | 13 | 851 | 870 | 1282 |
| 596186 | 47 | 66 | AGCACCCCGTCTCCGCGACT | 24 | 853 | 872 | 1283 |
| 596187 | 49 | 68 | CCAGCACCCCGTCTCCGCGA | 38 | 855 | 874 | 1284 |
| 596188 | 51 | 70 | AACCAGCACCCCGTCTCCGC | 11 | 857 | 876 | 1285 |
| 596189 | 53 | 72 | CAAACCAGCACCCCGTCTCC | 13 | 859 | 878 | 1286 |
| 596190 | 55 | 74 | CGCAAACCAGCACCCCGTCT | 21 | 861 | 880 | 1287 |
| 150510 | 57 | 76 | GACGCAAACCAGCACCCCGT | 45 | 863 | 882 | 109 |
| 596191 | 59 | 78 | ACGACGCAAACCAGCACCCC | 30 | 865 | 884 | 1288 |
| 596192 | 61 | 80 | CTACGACGCAAACCAGCACC | 19 | 867 | 886 | 1289 |
| 596193 | 63 | 82 | GACTACGACGCAAACCAGCA | 40 | 869 | 888 | 1290 |
| 596194 | 65 | 84 | GAGACTACGACGCAAACCAG | 23 | 871 | 890 | 1291 |
| 596195 | 67 | 86 | AGGAGACTACGACGCAAACC | 35 | 873 | 892 | 1292 |
| 596196 | 69 | 88 | GCAGGAGACTACGACGCAAA | 33 | 875 | 894 | 1293 |
| 596197 | 71 | 90 | CTGCAGGAGACTACGACGCA | 36 | 877 | 896 | 1294 |
| 596198 | 73 | 92 | CGCTGCAGGAGACTACGACG | 23 | 879 | 898 | 1295 |
| 596199 | 91 | 110 | TGCAACGGAAACCCCAGACG | 21 | 897 | 916 | 1296 |
| 596200 | 93 | 112 | ACTGCAACGGAAACCCCAGA | 43 | 899 | 918 | 1297 |
| 596201 | 97 | 116 | GAGGACTGCAACGGAAACCC | 24 | 903 | 922 | 1298 |
| 596202 | 99 | 118 | CCGAGGACTGCAACGGAAAC | 29 | 905 | 924 | 1299 |
| 596203 | 101 | 120 | TTCCGAGGACTGCAACGGAA | 5 | 907 | 926 | 1300 |
| 150438 | 103 | 122 | GGTTCCGAGGACTGCAACGG | 35 | 909 | 928 | 110 |
| 345716 | 105 | 124 | CTGGTTCCGAGGACTGCAAC | 51 | 911 | 930 | 1301 |
| 150439 | 107 | 126 | TCCTGGTTCCGAGGACTGCA | 24 | 913 | 932 | 111 |
| 596204 | 109 | 128 | GGTCCTGGTTCCGAGGACTG | 14 | 915 | 934 | 1302 |
| 150440 | 111 | 130 | GAGGTCCTGGTTCCGAGGAC | 31 | 917 | 936 | 112 |
| 596205 | 113 | 132 | CCGAGGTCCTGGTTCCGAGG | 18 | 919 | 938 | 1303 |
| 345718 | 115 | 134 | CGCCGAGGTCCTGGTTCCGA | 24 | 921 | 940 | 1304 |
| 596206 | 117 | 136 | CACGCCGAGGTCCTGGTTCC | 23 | 923 | 942 | 1305 |
| 596207 | 119 | 138 | GCCACGCCGAGGTCCTGGTT | 38 | 925 | 944 | 1306 |
| 596208 | 123 | 142 | CTAGGCCACGCCGAGGTCCT | 39 | 929 | 948 | 1307 |
| 345720 | 125 | 144 | CGCTAGGCCACGCCGAGGTC | 52 | 931 | 950 | 1308 |
| 596209 | 127 | 146 | CTCGCTAGGCCACGCCGAGG | 46 | 933 | 952 | 1309 |
| 596210 | 129 | 148 | AACTCGCTAGGCCACGCCGA | 44 | 935 | 954 | 1310 |
| 596211 | 131 | 150 | ATAACTCGCTAGGCCACGCC | 12 | 937 | 956 | 1311 |
| 596212 | 133 | 152 | CCATAACTCGCTAGGCCACG | 22 | 939 | 958 | 1312 |
| 345722 | 135 | 154 | CGCCATAACTCGCTAGGCCA | 59 | 941 | 960 | 1313 |
| 150442 | 137 | 156 | GTCGCCATAACTCGCTAGGC | 40 | 943 | 962 | 113 |
| 146143 | 157 | 176 | TCAGCACGCACACGGCCTTC | 52 | 963 | 982 | 114 |
| 195753 | 159 | 178 | CTTCAGCACGCACACGGCCT | 57 | 965 | 984 | 115 |
| 333607 | 161 | 180 | CCCTTCAGCACGCACACGGC | 37 | 967 | 986 | 116 |
| 333608 | 163 | 182 | CGCCCTTCAGCACGCACACG | 23 | 969 | 988 | 117 |
| 333611 | 167 | 186 | CCGTCGCCCTTCAGCACGCA | 67 | 973 | 992 | 21 |
| 596213 | 171 | 190 | TGGGCCGTCGCCCTTCAGCA | 12 | 977 | 996 | 1314 |
| 596214 | 173 | 192 | ACTGGGCCGTCGCCCTTCAG | 26 | 979 | 998 | 1315 |
| 596215 | 175 | 194 | GCACTGGGCCGTCGCCCTTC | 14 | 981 | 1000 | 1316 |
| 596216 | 177 | 196 | CTGCACTGGGCCGTCGCCCT | 24 | 983 | 1002 | 1317 |
| 596217 | 181 | 200 | TGCCCTGCACTGGGCCGTCG | 38 | 987 | 1006 | 1318 |
| 596218 | 183 | 202 | GATGCCCTGCACTGGGCCGT | 15 | 989 | 1008 | 1319 |
| 596219 | 185 | 204 | ATGATGCCCTGCACTGGGCC | 20 | 991 | 1010 | 1320 |
| 596220 | 189 | 208 | ATTGATGATGCCCTGCACTG | 8 | 995 | 1014 | 1321 |
| 596221 | 191 | 210 | AAATTGATGATGCCCTGCAC | 14 | 997 | 1016 | 1322 |
| 596222 | 193 | 212 | CGAAATTGATGATGCCCTGC | 32 | 999 | 1018 | 1323 |
| 596223 | 195 | 214 | CTCGAAATTGATGATGCCCT | 31 | 1001 | 1020 | 1324 |
| 596224 | 197 | 216 | TGCTCGAAATTGATGATGCC | 20 | 1003 | 1022 | 1325 |
| 596225 | 199 | 218 | TCTGCTCGAAATTGATGATG | 14 | 1005 | 1024 | 1326 |
| 596226 | 201 | 220 | CTTCTGCTCGAAATTGATGA | 11 | 1007 | 1026 | 1327 |
| 596227 | 240 | 259 | TTTAATGCTTCCCCACACCT | 15 | 4994 | 5013 | 1328 |
| 596228 | 242 | 261 | CCTTTAATGCTTCCCCACAC | 1 | 4996 | 5015 | 1329 |
| 596229 | 244 | 263 | GTCCTTTAATGCTTCCCCAC | 9 | 4998 | 5017 | 1330 |
| Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2 | ||||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | Chemistry | % inhibition | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 596530 | 164 | 180 | eekkddddddddkkeee | 74 | 970 | 986 | 1331 | |
| 596721 | 164 | 180 | eekkdddddddddkkee | 81 | 970 | 986 | 1331 | |
| 596531 | 165 | 181 | eekkddddddddkkeee | 75 | 971 | 987 | 1332 | |
| 596722 | 165 | 181 | eekkdddddddddkkee | 60 | 971 | 987 | 1332 | |
| 596532 | 166 | 182 | eekkddddddddkkeee | 67 | 972 | 988 | 1333 | |
| 596723 | 166 | 182 | eekkdddddddddkkee | 73 | 972 | 988 | 1333 | |
| 333611 | 167 | 186 | eeeeeddddddddddeeeee | 73 | 973 | 992 | 21 | |
| 596720 | 167 | 183 | eekkddddddddkkeee | 56 | 973 | 989 | 966 | |
| 596911 | 167 | 183 | eekkdddddddddkkee | 63 | 973 | 989 | 966 | |
| 596533 | 168 | 184 | eekkddddddddkkeee | 60 | 974 | 990 | 967 | |
| 596724 | 168 | 184 | eekkdddddddddkkee | 72 | 974 | 990 | 967 | |
| 596534 | 169 | 185 | eekkddddddddkkeee | 52 | 975 | 991 | 968 | |
| 596725 | 169 | 185 | eekkdddddddddkkee | 43 | 975 | 991 | 968 | |
| 596535 | 170 | 186 | eekkddddddddkkeee | 71 | 976 | 992 | 969 | |
| 596726 | 170 | 186 | eekkdddddddddkkee | 75 | 976 | 992 | 969 | |
| 596536 | 171 | 187 | eekkddddddddkkeee | 64 | 977 | 993 | 970 | |
| 596727 | 171 | 187 | eekkdddddddddkkee | 57 | 977 | 993 | 970 | |
| 596537 | 577 | 593 | eekkddddddddkkeee | 48 | 9727 | 9743 | 1334 | |
| 596728 | 577 | 593 | eekkdddddddddkkee | 46 | 9727 | 9743 | 1334 | |
| 596538 | 578 | 594 | eekkddddddddkkeee | 27 | 9728 | 9744 | 1335 | |
| 596729 | 578 | 594 | eekkdddddddddkkee | 45 | 9728 | 9744 | 1335 | |
| 596539 | 579 | 595 | eekkddddddddkkeee | 56 | 9729 | 9745 | 1336 | |
| 596730 | 579 | 595 | eekkdddddddddkkee | 63 | 9729 | 9745 | 1336 | |
| 596540 | 580 | 596 | eekkddddddddkkeee | 60 | 9730 | 9746 | 1337 | |
| 596731 | 580 | 596 | eekkdddddddddkkee | 63 | 9730 | 9746 | 1337 | |
| 596541 | 581 | 597 | eekkddddddddkkeee | 46 | 9731 | 9747 | 1338 | |
| 596732 | 581 | 597 | eekkdddddddddkkee | 63 | 9731 | 9747 | 1338 | |
| 596542 | 582 | 598 | eekkddddddddkkeee | 62 | 9732 | 9748 | 1111 | |
| 596733 | 582 | 598 | eekkdddddddddkkee | 56 | 9732 | 9748 | 1111 | |
| 596543 | 583 | 599 | eekkddddddddkkeee | 58 | 9733 | 9749 | 1112 | |
| 596734 | 583 | 599 | eekkdddddddddkkee | 61 | 9733 | 9749 | 1112 | |
| 596544 | 584 | 600 | eekkddddddddkkeee | 66 | 9734 | 9750 | 1113 | |
| 596735 | 584 | 600 | eekkdddddddddkkee | 73 | 9734 | 9750 | 1113 | |
| 596545 | 585 | 601 | eekkddddddddkkeee | 63 | 9735 | 9751 | 1114 | |
| 596736 | 585 | 601 | eekkdddddddddkkee | 74 | 9735 | 9751 | 1114 | |
| 596546 | 588 | 604 | eekkddddddddkkeee | 41 | 9738 | 9754 | 1115 | |
| 596737 | 588 | 604 | eekkdddddddddkkee | 58 | 9738 | 9754 | 1115 | |
| 596547 | 589 | 605 | eekkddddddddkkeee | 57 | 9739 | 9755 | 1116 | |
| 596738 | 589 | 605 | eekkdddddddddkkee | 59 | 9739 | 9755 | 1116 | |
| 596548 | 590 | 606 | eekkddddddddkkeee | 31 | 9740 | 9756 | 1117 | |
| 596739 | 590 | 606 | eekkdddddddddkkee | 58 | 9740 | 9756 | 1117 | |
| 596549 | 591 | 607 | eekkddddddddkkeee | 33 | 9741 | 9757 | 1118 | |
| 596740 | 591 | 607 | eekkdddddddddkkee | 66 | 9741 | 9757 | 1118 | |
| 596550 | 592 | 608 | eekkddddddddkkeee | 30 | 9742 | 9758 | 1119 | |
| 596741 | 592 | 608 | eekkdddddddddkkee | 30 | 9742 | 9758 | 1119 | |
| 596551 | 593 | 609 | eekkddddddddkkeee | 19 | 9743 | 9759 | 1120 | |
| 596742 | 593 | 609 | eekkdddddddddkkee | 46 | 9743 | 9759 | 1120 | |
| 596552 | 594 | 610 | eekkddddddddkkeee | 14 | 9744 | 9760 | 1121 | |
| 596743 | 594 | 610 | eekkdddddddddkkee | 5 | 9744 | 9760 | 1121 | |
| 596553 | 595 | 611 | eekkddddddddkkeee | 2 | 9745 | 9761 | 1122 | |
| 596744 | 595 | 611 | eekkdddddddddkkee | 23 | 9745 | 9761 | 1122 | |
| 596554 | 596 | 612 | eekkddddddddkkeee | 19 | 9746 | 9762 | 1123 | |
| 596745 | 596 | 612 | eekkdddddddddkkee | 6 | 9746 | 9762 | 1123 | |
| 596555 | 597 | 613 | eekkddddddddkkeee | 41 | 9747 | 9763 | 1124 | |
| 596746 | 597 | 613 | eekkdddddddddkkee | 41 | 9747 | 9763 | 1124 | |
| 596556 | 598 | 614 | eekkddddddddkkeee | 34 | 9748 | 9764 | 1125 | |
| 596747 | 598 | 614 | eekkdddddddddkkee | 46 | 9748 | 9764 | 1125 | |
| 596557 | 599 | 615 | eekkddddddddkkeee | 54 | 9749 | 9765 | 1126 | |
| 596748 | 599 | 615 | eekkdddddddddkkee | 68 | 9749 | 9765 | 1126 | |
| 596558 | 600 | 616 | eekkddddddddkkeee | 50 | 9750 | 9766 | 1127 | |
| 596749 | 600 | 616 | eekkdddddddddkkee | 47 | 9750 | 9766 | 1127 | |
| 596559 | 601 | 617 | eekkddddddddkkeee | 76 | 9751 | 9767 | 1128 | |
| 596750 | 601 | 617 | eekkdddddddddkkee | 64 | 9751 | 9767 | 1128 | |
| 596560 | 602 | 618 | eekkddddddddkkeee | 61 | 9752 | 9768 | 1129 | |
| 596751 | 602 | 618 | eekkdddddddddkkee | 64 | 9752 | 9768 | 1129 | |
| 596561 | 603 | 619 | eekkddddddddkkeee | 47 | 9753 | 9769 | 1130 | |
| 596752 | 603 | 619 | eekkdddddddddkkee | 65 | 9753 | 9769 | 1130 | |
| 596562 | 604 | 620 | eekkddddddddkkeee | 37 | 9754 | 9770 | 1131 | |
| 596753 | 604 | 620 | eekkdddddddddkkee | 58 | 9754 | 9770 | 1131 | |
| 596563 | 608 | 624 | eekkddddddddkkeee | 43 | 9758 | 9774 | 1133 | |
| 596754 | 608 | 624 | eekkdddddddddkkee | 38 | 9758 | 9774 | 1133 | |
| 596564 | 609 | 625 | eekkddddddddkkeee | 57 | 9759 | 9775 | 1134 | |
| 596755 | 609 | 625 | eekkdddddddddkkee | 52 | 9759 | 9775 | 1134 | |
| 596565 | 610 | 626 | eekkddddddddkkeee | 27 | 9760 | 9776 | 1135 | |
| 596756 | 610 | 626 | eekkdddddddddkkee | 57 | 9760 | 9776 | 1135 | |
| 596566 | 611 | 627 | eekkddddddddkkeee | 35 | 9761 | 9777 | 1136 | |
| 596757 | 611 | 627 | eekkdddddddddkkee | 39 | 9761 | 9777 | 1136 | |
| 596567 | 616 | 632 | eekkddddddddkkeee | 42 | 9766 | 9782 | 1141 | |
| 596758 | 616 | 632 | eekkdddddddddkkee | 48 | 9766 | 9782 | 1141 | |
| Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2 | ||||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | Chemistry | % inhibition | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | eeeeeddddddddddeeeee | 64 | 973 | 992 | 21 | |
| 596720 | 167 | 183 | eekkddddddddkkeee | 56 | 973 | 989 | 966 | |
| 596911 | 167 | 183 | eekkdddddddddkkee | 60 | 973 | 989 | 966 | |
| 596568 | 617 | 633 | eekkddddddddkkeee | 50 | 9767 | 9783 | 1142 | |
| 596759 | 617 | 633 | eekkdddddddddkkee | 57 | 9767 | 9783 | 1142 | |
| 596569 | 618 | 634 | eekkddddddddkkeee | 53 | 9768 | 9784 | 1143 | |
| 596760 | 618 | 634 | eekkdddddddddkkee | 55 | 9768 | 9784 | 1143 | |
| 596570 | 619 | 635 | eekkddddddddkkeee | 81 | 9769 | 9785 | 1144 | |
| 596761 | 619 | 635 | eekkdddddddddkkee | 78 | 9769 | 9785 | 1144 | |
| 596571 | 620 | 636 | eekkddddddddkkeee | 79 | 9770 | 9786 | 1145 | |
| 596762 | 620 | 636 | eekkdddddddddkkee | 78 | 9770 | 9786 | 1145 | |
| 596572 | 621 | 637 | eekkddddddddkkeee | 85 | 9771 | 9787 | 1146 | |
| 596763 | 621 | 637 | eekkdddddddddkkee | 76 | 9771 | 9787 | 1146 | |
| 596573 | 622 | 638 | eekkddddddddkkeee | 73 | 9772 | 9788 | 1147 | |
| 596764 | 622 | 638 | eekkdddddddddkkee | 87 | 9772 | 9788 | 1147 | |
| 596574 | 623 | 639 | eekkddddddddkkeee | 69 | 9773 | 9789 | 1148 | |
| 596765 | 623 | 639 | eekkdddddddddkkee | 82 | 9773 | 9789 | 1148 | |
| 596575 | 624 | 640 | eekkddddddddkkeee | 70 | 9774 | 9790 | 1149 | |
| 596766 | 624 | 640 | eekkdddddddddkkee | 76 | 9774 | 9790 | 1149 | |
| 596576 | 625 | 641 | eekkddddddddkkeee | 55 | 9775 | 9791 | 1150 | |
| 596767 | 625 | 641 | eekkdddddddddkkee | 58 | 9775 | 9791 | 1150 | |
| 596577 | 640 | 656 | eekkddddddddkkeee | 73 | 9790 | 9806 | 1339 | |
| 596768 | 640 | 656 | eekkdddddddddkkee | 86 | 9790 | 9806 | 1339 | |
| 596578 | 641 | 657 | eekkddddddddkkeee | 68 | 9791 | 9807 | 1340 | |
| 596769 | 641 | 657 | eekkdddddddddkkee | 80 | 9791 | 9807 | 1340 | |
| 596579 | 642 | 658 | eekkddddddddkkeee | 27 | 9792 | 9808 | 1341 | |
| 596770 | 642 | 658 | eekkdddddddddkkee | 42 | 9792 | 9808 | 1341 | |
| 596580 | 643 | 659 | eekkddddddddkkeee | 41 | 9793 | 9809 | 1151 | |
| 596771 | 643 | 659 | eekkdddddddddkkee | 28 | 9793 | 9809 | 1151 | |
| 596581 | 644 | 660 | eekkddddddddkkeee | 63 | 9794 | 9810 | 1152 | |
| 596772 | 644 | 660 | eekkdddddddddkkee | 63 | 9794 | 9810 | 1152 | |
| 596582 | 645 | 661 | eekkddddddddkkeee | 84 | 9795 | 9811 | 1153 | |
| 596773 | 645 | 661 | eekkdddddddddkkee | 86 | 9795 | 9811 | 1153 | |
| 596583 | 646 | 662 | eekkddddddddkkeee | 95 | 9796 | 9812 | 1154 | |
| 596774 | 646 | 662 | eekkdddddddddkkee | 96 | 9796 | 9812 | 1154 | |
| 596584 | 647 | 663 | eekkddddddddkkeee | 79 | 9797 | 9813 | 1155 | |
| 596775 | 647 | 663 | eekkdddddddddkkee | 86 | 9797 | 9813 | 1155 | |
| 596585 | 651 | 667 | eekkddddddddkkeee | 19 | 9801 | 9817 | 1159 | |
| 596776 | 651 | 667 | eekkdddddddddkkee | 43 | 9801 | 9817 | 1159 | |
| 596586 | 652 | 668 | eekkddddddddkkeee | 57 | 9802 | 9818 | 1160 | |
| 596777 | 652 | 668 | eekkdddddddddkkee | 54 | 9802 | 9818 | 1160 | |
| 596587 | 653 | 669 | eekkddddddddkkeee | 71 | 9803 | 9819 | 1161 | |
| 596778 | 653 | 669 | eekkdddddddddkkee | 61 | 9803 | 9819 | 1161 | |
| 596588 | 654 | 670 | eekkddddddddkkeee | 79 | 9804 | 9820 | 1162 | |
| 596779 | 654 | 670 | eekkdddddddddkkee | 83 | 9804 | 9820 | 1162 | |
| 596589 | 655 | 671 | eekkddddddddkkeee | 85 | 9805 | 9821 | 1163 | |
| 596780 | 655 | 671 | eekkdddddddddkkee | 86 | 9805 | 9821 | 1163 | |
| 596590 | 656 | 672 | eekkddddddddkkeee | 87 | 9806 | 9822 | 1164 | |
| 596781 | 656 | 672 | eekkdddddddddkkee | 91 | 9806 | 9822 | 1164 | |
| 596591 | 657 | 673 | eekkddddddddkkeee | 75 | 9807 | 9823 | 1165 | |
| 596782 | 657 | 673 | eekkdddddddddkkee | 83 | 9807 | 9823 | 1165 | |
| 596592 | 658 | 674 | eekkddddddddkkeee | 74 | 9808 | 9824 | 1166 | |
| 596783 | 658 | 674 | eekkdddddddddkkee | 79 | 9808 | 9824 | 1166 | |
| 596593 | 659 | 675 | eekkddddddddkkeee | 76 | 9809 | 9825 | 1167 | |
| 596784 | 659 | 675 | eekkdddddddddkkee | 84 | 9809 | 9825 | 1167 | |
| 596594 | 660 | 676 | eekkddddddddkkeee | 66 | 9810 | 9826 | 1168 | |
| 596785 | 660 | 676 | eekkdddddddddkkee | 75 | 9810 | 9826 | 1168 | |
| 596595 | 665 | 681 | eekkddddddddkkeee | 64 | 9815 | 9831 | 1171 | |
| 596786 | 665 | 681 | eekkdddddddddkkee | 77 | 9815 | 9831 | 1171 | |
| 596596 | 666 | 682 | eekkddddddddkkeee | 75 | 9816 | 9832 | 1342 | |
| 596787 | 666 | 682 | eekkdddddddddkkee | 84 | 9816 | 9832 | 1342 | |
| 596597 | 667 | 683 | eekkddddddddkkeee | 60 | 9817 | 9833 | 1343 | |
| 596788 | 667 | 683 | eekkdddddddddkkee | 77 | 9817 | 9833 | 1343 | |
| 596598 | 668 | 684 | eekkddddddddkkeee | 79 | 9818 | 9834 | 1344 | |
| 596789 | 668 | 684 | eekkdddddddddkkee | 85 | 9818 | 9834 | 1344 | |
| 596599 | 672 | 688 | eekkddddddddkkeee | 57 | 9822 | 9838 | 1345 | |
| 596790 | 672 | 688 | eekkdddddddddkkee | 67 | 9822 | 9838 | 1345 | |
| 596600 | 674 | 690 | eekkddddddddkkeee | 85 | 9824 | 9840 | 1346 | |
| 596791 | 674 | 690 | eekkdddddddddkkee | 88 | 9824 | 9840 | 1346 | |
| 596601 | 675 | 691 | eekkddddddddkkeee | 70 | 9825 | 9841 | 1347 | |
| 596792 | 675 | 691 | eekkdddddddddkkee | 83 | 9825 | 9841 | 1347 | |
| 596602 | 676 | 692 | eekkddddddddkkeee | 85 | 9826 | 9842 | 1348 | |
| 596793 | 676 | 692 | eekkdddddddddkkee | 81 | 9826 | 9842 | 1348 | |
| 596603 | 677 | 693 | eekkddddddddkkeee | 89 | 9827 | 9843 | 1349 | |
| 596794 | 677 | 693 | eekkdddddddddkkee | 90 | 9827 | 9843 | 1349 | |
| 596604 | 678 | 694 | eekkddddddddkkeee | 90 | 9828 | 9844 | 1350 | |
| 596795 | 678 | 694 | eekkdddddddddkkee | 85 | 9828 | 9844 | 1350 | |
| 596605 | 679 | 695 | eekkddddddddkkeee | 90 | 9829 | 9845 | 1351 | |
| 596796 | 679 | 695 | eekkdddddddddkkee | 92 | 9829 | 9845 | 1351 | |
Modified oligonucleotides were designed targeting an SOD-1 nucleic acid and were tested for their effects on SOD-1 mRNA in vitro. ISIS 333611, a 5-10-5 MOE gapmer, which was previously described in WO 2005/040180 , was included as a benchmark.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cultured HepG2 cells at a density of 20,000 cells per well were transfected using electroporation with 5,000 nM modified oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR.
Human primer probe set RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. 'n.d.' indicates that inhibition levels were not measured.
The newly designed modified oligonucleotides in the Tables below were designed as deoxy, MOE, and cEt gapmers. The gapmers are 17 nucleosides in length wherein each nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety. The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar. The internucleoside linkages throughout each gapmer are phosphorothioate linkages. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). 'n/a' indicates that the modified oligonucleotide does not target that particular gene sequence with 100% complementarity.
Table 21
Table 22
Table 23
| Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2 | ||||||||
| ISIS NO | SEQ ID NO:1 Start Site | SEQ ID NO:1 Stop Site | Sequence | Chemistry | % inhibition | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | eeeeeddddddddddeeeee | 71 | 973 | 992 | 21 | |
| 596720 | 167 | 183 | eekkddddddddkkeee | 53 | 973 | 989 | 966 | |
| 596911 | 167 | 183 | eekkdddddddddkkee | 61 | 973 | 989 | 966 | |
| 596606 | 681 | 697 | eekkddddddddkkeee | 87 | 9831 | 9847 | 1352 | |
| 596797 | 681 | 697 | eekkdddddddddkkee | 92 | 9831 | 9847 | 1352 | |
| 596607 | 683 | 699 | eekkddddddddkkeee | 86 | 9833 | 9849 | 1172 | |
| 596798 | 683 | 699 | eekkdddddddddkkee | 86 | 9833 | 9849 | 1172 | |
| 596608 | 684 | 700 | eekkddddddddkkeee | 88 | 9834 | 9850 | 1173 | |
| 596799 | 684 | 700 | eekkdddddddddkkee | 80 | 9834 | 9850 | 1173 | |
| 596609 | 685 | 701 | eekkddddddddkkeee | 77 | 9835 | 9851 | 1174 | |
| 596800 | 685 | 701 | eekkdddddddddkkee | 85 | 9835 | 9851 | 1174 | |
| 596610 | 686 | 702 | eekkddddddddkkeee | 83 | 9836 | 9852 | 1175 | |
| 596801 | 686 | 702 | eekkdddddddddkkee | 84 | 9836 | 9852 | 1175 | |
| 596611 | 690 | 706 | eekkddddddddkkeee | 54 | 9840 | 9856 | 1179 | |
| 596802 | 690 | 706 | eekkdddddddddkkee | 61 | 9840 | 9856 | 1179 | |
| 596612 | 691 | 707 | eekkddddddddkkeee | 68 | 9841 | 9857 | 1180 | |
| 596803 | 691 | 707 | eekkdddddddddkkee | 63 | 9841 | 9857 | 1180 | |
| 596613 | 697 | 713 | eekkddddddddkkeee | 62 | 9847 | 9863 | 1353 | |
| 596804 | 697 | 713 | eekkdddddddddkkee | 53 | 9847 | 9863 | 1353 | |
| 596614 | 699 | 715 | eekkddddddddkkeee | 37 | 9849 | 9865 | 1354 | |
| 596805 | 699 | 715 | eekkdddddddddkkee | 49 | 9849 | 9865 | 1354 | |
| 596615 | 710 | 726 | eekkddddddddkkeee | 28 | 9860 | 9876 | 1355 | |
| 596806 | 710 | 726 | eekkdddddddddkkee | 39 | 9860 | 9876 | 1355 | |
| 596616 | 711 | 727 | eekkddddddddkkeee | 28 | 9861 | 9877 | 1356 | |
| 596807 | 711 | 727 | eekkdddddddddkkee | 35 | 9861 | 9877 | 1356 | |
| 596617 | 713 | 729 | eekkddddddddkkeee | 41 | 9863 | 9879 | 1357 | |
| 596808 | 713 | 729 | eekkdddddddddkkee | 37 | 9863 | 9879 | 1357 | |
| 596618 | 737 | 753 | eekkddddddddkkeee | 35 | 9887 | 9903 | 1358 | |
| 596809 | 737 | 753 | eekkdddddddddkkee | 42 | 9887 | 9903 | 1358 | |
| 596619 | 739 | 755 | eekkddddddddkkeee | 14 | 9889 | 9905 | 1359 | |
| 596810 | 739 | 755 | eekkdddddddddkkee | 20 | 9889 | 9905 | 1359 | |
| 596620 | 740 | 756 | eekkddddddddkkeee | 23 | 9890 | 9906 | 1360 | |
| 596811 | 740 | 756 | eekkdddddddddkkee | 26 | 9890 | 9906 | 1360 | |
| 596621 | 741 | 757 | eekkddddddddkkeee | 2 | 9891 | 9907 | 1361 | |
| 596812 | 741 | 757 | eekkdddddddddkkee | 16 | 9891 | 9907 | 1361 | |
| 596622 | 743 | 759 | eekkddddddddkkeee | 27 | 9893 | 9909 | 1362 | |
| 596813 | 743 | 759 | eekkdddddddddkkee | 38 | 9893 | 9909 | 1362 | |
| 596623 | 744 | 760 | eekkddddddddkkeee | 27 | 9894 | 9910 | 1363 | |
| 596814 | 744 | 760 | eekkdddddddddkkee | 35 | 9894 | 9910 | 1363 | |
| 596624 | 745 | 761 | eekkddddddddkkeee | 40 | 9895 | 9911 | 1364 | |
| 596815 | 745 | 761 | eekkdddddddddkkee | 54 | 9895 | 9911 | 1364 | |
| 596625 | 746 | 762 | eekkddddddddkkeee | 42 | 9896 | 9912 | 1365 | |
| 596816 | 746 | 762 | eekkdddddddddkkee | 46 | 9896 | 9912 | 1365 | |
| 596626 | 747 | 763 | eekkddddddddkkeee | 26 | 9897 | 9913 | 1366 | |
| 596817 | 747 | 763 | eekkdddddddddkkee | 37 | 9897 | 9913 | 1366 | |
| 596627 | 748 | 764 | eekkddddddddkkeee | 35 | 9898 | 9914 | 1367 | |
| 596818 | 748 | 764 | eekkdddddddddkkee | 45 | 9898 | 9914 | 1367 | |
| 596628 | 749 | 765 | eekkddddddddkkeee | 25 | 9899 | 9915 | 1368 | |
| 596819 | 749 | 765 | eekkdddddddddkkee | 38 | 9899 | 9915 | 1368 | |
| 596629 | 750 | 766 | eekkddddddddkkeee | 33 | 9900 | 9916 | 1369 | |
| 596820 | 750 | 766 | eekkdddddddddkkee | 50 | 9900 | 9916 | 1369 | |
| 596630 | 751 | 767 | eekkddddddddkkeee | 38 | 9901 | 9917 | 1370 | |
| 596821 | 751 | 767 | eekkdddddddddkkee | 38 | 9901 | 9917 | 1370 | |
| 596631 | 752 | 768 | eekkddddddddkkeee | 25 | 9902 | 9918 | 1371 | |
| 596822 | 752 | 768 | eekkdddddddddkkee | 43 | 9902 | 9918 | 1371 | |
| 596632 | 753 | 769 | eekkddddddddkkeee | 31 | 9903 | 9919 | 1372 | |
| 596823 | 753 | 769 | eekkdddddddddkkee | 44 | 9903 | 9919 | 1372 | |
| 596633 | 754 | 770 | eekkddddddddkkeee | 34 | 9904 | 9920 | 1373 | |
| 596824 | 754 | 770 | eekkdddddddddkkee | 53 | 9904 | 9920 | 1373 | |
| 596634 | 761 | 777 | eekkddddddddkkeee | 34 | 9911 | 9927 | 1374 | |
| 596825 | 761 | 777 | eekkdddddddddkkee | 38 | 9911 | 9927 | 1374 | |
| 596635 | 762 | 778 | eekkddddddddkkeee | 49 | 9912 | 9928 | 1375 | |
| 596826 | 762 | 778 | eekkdddddddddkkee | 38 | 9912 | 9928 | 1375 | |
| 596636 | 763 | 779 | eekkddddddddkkeee | 33 | 9913 | 9929 | 1376 | |
| 596827 | 763 | 779 | eekkdddddddddkkee | 48 | 9913 | 9929 | 1376 | |
| 596637 | 764 | 780 | eekkddddddddkkeee | 23 | 9914 | 9930 | 1377 | |
| 596828 | 764 | 780 | eekkdddddddddkkee | 32 | 9914 | 9930 | 1377 | |
| 596638 | 766 | 782 | eekkddddddddkkeee | 47 | 9916 | 9932 | 1378 | |
| 596829 | 766 | 782 | eekkdddddddddkkee | 29 | 9916 | 9932 | 1378 | |
| 596639 | 767 | 783 | eekkddddddddkkeee | 40 | 9917 | 9933 | 1379 | |
| 596830 | 767 | 783 | eekkdddddddddkkee | 48 | 9917 | 9933 | 1379 | |
| 596640 | 768 | 784 | eekkddddddddkkeee | 42 | 9918 | 9934 | 1380 | |
| 596831 | 768 | 784 | eekkdddddddddkkee | 39 | 9918 | 9934 | 1380 | |
| 596641 | 770 | 786 | eekkddddddddkkeee | 40 | 9920 | 9936 | 1381 | |
| 596832 | 770 | 786 | eekkdddddddddkkee | 54 | 9920 | 9936 | 1381 | |
| 596642 | 771 | 787 | eekkddddddddkkeee | 33 | 9921 | 9937 | 1382 | |
| 596833 | 771 | 787 | eekkdddddddddkkee | 43 | 9921 | 9937 | 1382 | |
| 596643 | 772 | 788 | eekkddddddddkkeee | 38 | 9922 | 9938 | 1184 | |
| 596834 | 772 | 788 | eekkdddddddddkkee | 38 | 9922 | 9938 | 1184 | |
| Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2 | ||||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | Chemistry | % inhibition | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | eeeeeddddddddddeeeee | 62 | 973 | 992 | 21 | |
| 596720 | 167 | 183 | eekkddddddddkkeee | 53 | 973 | 989 | 966 | |
| 596911 | 167 | 183 | eekkdddddddddkkee | 58 | 973 | 989 | 966 | |
| 596644 | 773 | 789 | eekkddddddddkkeee | 19 | 9923 | 9939 | 1185 | |
| 596835 | 773 | 789 | eekkdddddddddkkee | 38 | 9923 | 9939 | 1185 | |
| 596645 | 774 | 790 | eekkddddddddkkeee | 46 | 9924 | 9940 | 1186 | |
| 596836 | 774 | 790 | eekkdddddddddkkee | 48 | 9924 | 9940 | 1186 | |
| 596646 | 782 | 798 | eekkddddddddkkeee | 60 | 9932 | 9948 | 1193 | |
| 596837 | 782 | 798 | eekkdddddddddkkee | 63 | 9932 | 9948 | 1193 | |
| 596647 | 783 | 799 | eekkddddddddkkeee | 55 | 9933 | 9949 | 1194 | |
| 596838 | 783 | 799 | eekkdddddddddkkee | 55 | 9933 | 9949 | 1194 | |
| 596648 | 806 | 822 | eekkddddddddkkeee | 46 | 9956 | 9972 | 1383 | |
| 596839 | 806 | 822 | eekkdddddddddkkee | 53 | 9956 | 9972 | 1383 | |
| 596649 | 817 | 833 | eekkddddddddkkeee | 2 | 9967 | 9983 | 1201 | |
| 596840 | 817 | 833 | eekkdddddddddkkee | 15 | 9967 | 9983 | 1201 | |
| 596650 | 819 | 835 | eekkddddddddkkeee | 40 | 9969 | 9985 | 1203 | |
| 596841 | 819 | 835 | eekkdddddddddkkee | 44 | 9969 | 9985 | 1203 | |
| 596651 | 822 | 838 | eekkddddddddkkeee | 26 | 9972 | 9988 | 1206 | |
| 596842 | 822 | 838 | eekkdddddddddkkee | 38 | 9972 | 9988 | 1206 | |
| 596652 | 823 | 839 | eekkddddddddkkeee | 33 | 9973 | 9989 | 1207 | |
| 596843 | 823 | 839 | eekkdddddddddkkee | 22 | 9973 | 9989 | 1207 | |
| 596653 | 825 | 841 | eekkddddddddkkeee | 28 | 9975 | 9991 | 1209 | |
| 596844 | 825 | 841 | eekkdddddddddkkee | 47 | 9975 | 9991 | 1209 | |
| 596654 | 827 | 843 | eekkddddddddkkeee | 44 | 9977 | 9993 | 1211 | |
| 596845 | 827 | 843 | eekkdddddddddkkee | 56 | 9977 | 9993 | 1211 | |
| 596655 | 830 | 846 | eekkddddddddkkeee | 33 | 9980 | 9996 | 1214 | |
| 596846 | 830 | 846 | eekkdddddddddkkee | 43 | 9980 | 9996 | 1214 | |
| 596656 | 831 | 847 | eekkddddddddkkeee | 25 | 9981 | 9997 | 1215 | |
| 596847 | 831 | 847 | eekkdddddddddkkee | 53 | 9981 | 9997 | 1215 | |
| 596657 | 833 | 849 | eekkddddddddkkeee | 30 | 9983 | 9999 | 1217 | |
| 596848 | 833 | 849 | eekkdddddddddkkee | 38 | 9983 | 9999 | 1217 | |
| 596658 | 836 | 852 | eekkddddddddkkeee | 24 | 9986 | 10002 | 1220 | |
| 596849 | 836 | 852 | eekkdddddddddkkee | 46 | 9986 | 10002 | 1220 | |
| 596659 | 837 | 853 | eekkddddddddkkeee | 27 | 9987 | 10003 | 1221 | |
| 596850 | 837 | 853 | eekkdddddddddkkee | 42 | 9987 | 10003 | 1221 | |
| 596660 | 840 | 856 | eekkddddddddkkeee | 19 | 9990 | 10006 | 1384 | |
| 596851 | 840 | 856 | eekkdddddddddkkee | 35 | 9990 | 10006 | 1384 | |
| 596661 | 841 | 857 | eekkddddddddkkeee | 52 | 9991 | 10007 | 1385 | |
| 596852 | 841 | 857 | eekkdddddddddkkee | 52 | 9991 | 10007 | 1385 | |
| 596662 | 842 | 858 | eekkddddddddkkeee | 54 | 9992 | 10008 | 1386 | |
| 596853 | 842 | 858 | eekkdddddddddkkee | 69 | 9992 | 10008 | 1386 | |
| 596663 | 843 | 859 | eekkddddddddkkeee | 45 | 9993 | 10009 | 1387 | |
| 596854 | 843 | 859 | eekkdddddddddkkee | 58 | 9993 | 10009 | 1387 | |
| 596664 | 844 | 860 | eekkddddddddkkeee | n.d. | 9994 | 10010 | 1388 | |
| 596855 | 844 | 860 | eekkdddddddddkkee | 61 | 9994 | 10010 | 1388 | |
| 596665 | 845 | 861 | eekkddddddddkkeee | 49 | 9995 | 10011 | 1389 | |
| 596856 | 845 | 861 | eekkdddddddddkkee | 49 | 9995 | 10011 | 1389 | |
| 596666 | 846 | 862 | eekkddddddddkkeee | 35 | 9996 | 10012 | 1390 | |
| 596857 | 846 | 862 | eekkdddddddddkkee | 37 | 9996 | 10012 | 1390 | |
| 596667 | 847 | 863 | eekkddddddddkkeee | 42 | 9997 | 10013 | 1391 | |
| 596858 | 847 | 863 | eekkdddddddddkkee | 48 | 9997 | 10013 | 1391 | |
| 596668 | 848 | 864 | eekkddddddddkkeee | 46 | 9998 | 10014 | 1392 | |
| 596859 | 848 | 864 | eekkdddddddddkkee | 47 | 9998 | 10014 | 1392 | |
| 596669 | 849 | 865 | eekkddddddddkkeee | 49 | 9999 | 10015 | 1393 | |
| 596860 | 849 | 865 | eekkdddddddddkkee | 49 | 9999 | 10015 | 1393 | |
| 596670 | 850 | 866 | eekkddddddddkkeee | 33 | 10000 | 10016 | 1394 | |
| 596861 | 850 | 866 | eekkdddddddddkkee | 44 | 10000 | 10016 | 1394 | |
| 596671 | 851 | 867 | eekkddddddddkkeee | 29 | 10001 | 10017 | 1395 | |
| 596862 | 851 | 867 | eekkdddddddddkkee | 45 | 10001 | 10017 | 1395 | |
| 596672 | 854 | 870 | eekkddddddddkkeee | 25 | 10004 | 10020 | 1223 | |
| 596863 | 854 | 870 | eekkdddddddddkkee | 28 | 10004 | 10020 | 1223 | |
| 596673 | 855 | 871 | eekkddddddddkkeee | 28 | 10005 | 10021 | 1224 | |
| 596864 | 855 | 871 | eekkdddddddddkkee | 26 | 10005 | 10021 | 1224 | |
| 596674 | 858 | 874 | eekkddddddddkkeee | 29 | 10008 | 10024 | 1227 | |
| 596865 | 858 | 874 | eekkdddddddddkkee | 43 | 10008 | 10024 | 1227 | |
| 596675 | 859 | 875 | eekkddddddddkkeee | 54 | 10009 | 10025 | 1228 | |
| 596866 | 859 | 875 | eekkdddddddddkkee | 59 | 10009 | 10025 | 1228 | |
| 596676 | 860 | 876 | eekkddddddddkkeee | 52 | 10010 | 10026 | 1229 | |
| 596867 | 860 | 876 | eekkdddddddddkkee | 62 | 10010 | 10026 | 1229 | |
| 596677 | 861 | 877 | eekkddddddddkkeee | 58 | 10011 | 10027 | 1230 | |
| 596868 | 861 | 877 | eekkdddddddddkkee | 61 | 10011 | 10027 | 1230 | |
| 596678 | 862 | 878 | eekkddddddddkkeee | 54 | 10012 | 10028 | 1231 | |
| 596869 | 862 | 878 | eekkdddddddddkkee | 59 | 10012 | 10028 | 1231 | |
| 596679 | 863 | 879 | eekkddddddddkkeee | 43 | 10013 | 10029 | 1232 | |
| 596870 | 863 | 879 | eekkdddddddddkkee | 52 | 10013 | 10029 | 1232 | |
| 596680 | 864 | 880 | eekkddddddddkkeee | 30 | 10014 | 10030 | 1233 | |
| 596871 | 864 | 880 | eekkdddddddddkkee | 36 | 10014 | 10030 | 1233 | |
| 596681 | 865 | 881 | eekkddddddddkkeee | 33 | 10015 | 10031 | 1234 | |
| 596872 | 865 | 881 | eekkdddddddddkkee | 20 | 10015 | 10031 | 1234 | |
| Percent inhibition of SOD-1 mRNA by deoxy, MOE and cEt gapmers targeting SEQ ID NO: 1 and/or 2 | ||||||||
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | Chemistry | % inhibition | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 333611 | 167 | 186 | eeeeeddddddddddeeeee | 68 | 973 | 992 | 21 | |
| 596720 | 167 | 183 | eekkddddddddkkeee | 64 | 973 | 989 | 966 | |
| 596911 | 167 | 183 | eekkdddddddddkkee | 71 | 973 | 989 | 966 | |
| 596682 | 884 | 900 | eekkddddddddkkeee | 24 | 10034 | 10050 | 1396 | |
| 596873 | 884 | 900 | eekkdddddddddkkee | 32 | 10034 | 10050 | 1396 | |
| 596683 | 885 | 901 | eekkddddddddkkeee | 54 | 10035 | 10051 | 1397 | |
| 596874 | 885 | 901 | eekkdddddddddkkee | 44 | 10035 | 10051 | 1397 | |
| 596684 | 889 | 905 | eekkddddddddkkeee | 34 | 10039 | 10055 | 1398 | |
| 596875 | 889 | 905 | eekkdddddddddkkee | 47 | 10039 | 10055 | 1398 | |
| 596685 | 890 | 906 | eekkddddddddkkeee | 28 | 10040 | 10056 | 1399 | |
| 596876 | 890 | 906 | eekkdddddddddkkee | 46 | 10040 | 10056 | 1399 | |
| 596686 | 891 | 907 | eekkddddddddkkeee | 20 | 10041 | 10057 | 1242 | |
| 596877 | 891 | 907 | eekkdddddddddkkee | 16 | 10041 | 10057 | 1242 | |
| 596687 | 892 | 908 | eekkddddddddkkeee | 19 | 10042 | 10058 | 1243 | |
| 596878 | 892 | 908 | eekkdddddddddkkee | 29 | 10042 | 10058 | 1243 | |
| 596688 | 893 | 909 | eekkddddddddkkeee | 24 | 10043 | 10059 | 1244 | |
| 596879 | 893 | 909 | eekkdddddddddkkee | 11 | 10043 | 10059 | 1244 | |
| 596689 | 894 | 910 | eekkddddddddkkeee | 26 | 10044 | 10060 | 1245 | |
| 596880 | 894 | 910 | eekkdddddddddkkee | 30 | 10044 | 10060 | 1245 | |
| 596690 | 895 | 911 | eekkddddddddkkeee | 44 | 10045 | 10061 | 1246 | |
| 596881 | 895 | 911 | eekkdddddddddkkee | 55 | 10045 | 10061 | 1246 | |
| 596691 | 896 | 912 | eekkddddddddkkeee | 43 | 10046 | 10062 | 1247 | |
| 596882 | 896 | 912 | eekkdddddddddkkee | 48 | 10046 | 10062 | 1247 | |
| 596692 | 899 | 915 | eekkddddddddkkeee | 38 | 10049 | 10065 | 1250 | |
| 596883 | 899 | 915 | eekkdddddddddkkee | 57 | 10049 | 10065 | 1250 | |
| 596693 | 903 | 919 | eekkddddddddkkeee | 29 | 10053 | 10069 | 1254 | |
| 596884 | 903 | 919 | eekkdddddddddkkee | 47 | 10053 | 10069 | 1254 | |
| 596694 | 904 | 920 | eekkddddddddkkeee | 13 | 10054 | 10070 | 1255 | |
| 596885 | 904 | 920 | eekkdddddddddkkee | 31 | 10054 | 10070 | 1255 | |
| 596695 | 907 | 923 | eekkddddddddkkeee | 13 | 10057 | 10073 | 1258 | |
| 596886 | 907 | 923 | eekkdddddddddkkee | 34 | 10057 | 10073 | 1258 | |
| 596696 | 908 | 924 | eekkddddddddkkeee | 13 | 10058 | 10074 | 1259 | |
| 596887 | 908 | 924 | eekkdddddddddkkee | 26 | 10058 | 10074 | 1259 | |
| 596697 | 909 | 925 | eekkddddddddkkeee | 21 | 10059 | 10075 | 1260 | |
| 596888 | 909 | 925 | eekkdddddddddkkee | 22 | 10059 | 10075 | 1260 | |
| 596698 | 910 | 926 | eekkddddddddkkeee | 20 | 10060 | 10076 | 1261 | |
| 596889 | 910 | 926 | eekkdddddddddkkee | 28 | 10060 | 10076 | 1261 | |
| 596699 | 911 | 927 | eekkddddddddkkeee | 20 | 10061 | 10077 | 1262 | |
| 596890 | 911 | 927 | eekkdddddddddkkee | 27 | 10061 | 10077 | 1262 | |
| 596700 | 912 | 928 | eekkddddddddkkeee | 15 | 10062 | 10078 | 1400 | |
| 596891 | 912 | 928 | eekkdddddddddkkee | 21 | 10062 | 10078 | 1400 | |
| 596701 | 913 | 929 | eekkddddddddkkeee | 26 | 10063 | 10079 | 1401 | |
| 596892 | 913 | 929 | eekkdddddddddkkee | 35 | 10063 | 10079 | 1401 | |
| 596702 | 914 | 930 | eekkddddddddkkeee | 36 | 10064 | 10080 | 1402 | |
| 596893 | 914 | 930 | eekkdddddddddkkee | 46 | 10064 | 10080 | 1402 | |
| 596703 | 915 | 931 | eekkddddddddkkeee | 40 | 10065 | 10081 | 1403 | |
| 596894 | 915 | 931 | eekkdddddddddkkee | 36 | 10065 | 10081 | 1403 | |
| 596704 | 916 | 932 | eekkddddddddkkeee | 22 | 10066 | 10082 | 1404 | |
| 596895 | 916 | 932 | eekkdddddddddkkee | 30 | 10066 | 10082 | 1404 | |
| 596705 | 917 | 933 | eekkddddddddkkeee | 27 | 10067 | 10083 | 1405 | |
| 596896 | 917 | 933 | eekkdddddddddkkee | 27 | 10067 | 10083 | 1405 | |
| 596706 | 918 | 934 | eekkddddddddkkeee | 32 | 10068 | 10084 | 1406 | |
| 596897 | 918 | 934 | eekkdddddddddkkee | 34 | 10068 | 10084 | 1406 | |
| 596707 | 919 | 935 | eekkddddddddkkeee | 28 | 10069 | 10085 | 1407 | |
| 596898 | 919 | 935 | eekkdddddddddkkee | 34 | 10069 | 10085 | 1407 | |
| 596708 | 920 | 936 | eekkddddddddkkeee | 30 | 10070 | 10086 | 1408 | |
| 596899 | 920 | 936 | eekkdddddddddkkee | 44 | 10070 | 10086 | 1408 | |
| 596709 | 921 | 937 | eekkddddddddkkeee | 29 | 10071 | 10087 | 1409 | |
| 596900 | 921 | 937 | eekkdddddddddkkee | 31 | 10071 | 10087 | 1409 | |
| 596710 | 922 | 938 | eekkddddddddkkeee | 41 | 10072 | 10088 | 1410 | |
| 596901 | 922 | 938 | eekkdddddddddkkee | 33 | 10072 | 10088 | 1410 | |
| 596711 | 923 | 939 | eekkddddddddkkeee | 16 | 10073 | 10089 | 1411 | |
| 596902 | 923 | 939 | eekkdddddddddkkee | 11 | 10073 | 10089 | 1411 | |
| 596712 | 924 | 940 | eekkddddddddkkeee | 11 | 10074 | 10090 | 1412 | |
| 596903 | 924 | 940 | eekkdddddddddkkee | 27 | 10074 | 10090 | 1412 | |
| 596713 | 925 | 941 | eekkddddddddkkeee | 20 | 10075 | 10091 | 1413 | |
| 596904 | 925 | 941 | eekkdddddddddkkee | 27 | 10075 | 10091 | 1413 | |
| 596714 | 926 | 942 | eekkddddddddkkeee | 20 | 10076 | 10092 | 1414 | |
| 596905 | 926 | 942 | eekkdddddddddkkee | 25 | 10076 | 10092 | 1414 | |
| 596715 | 931 | 947 | eekkddddddddkkeee | 45 | 10081 | 10097 | 1415 | |
| 596906 | 931 | 947 | eekkdddddddddkkee | 34 | 10081 | 10097 | 1415 | |
| 596716 | 932 | 948 | eekkddddddddkkeee | 52 | 10082 | 10098 | 1416 | |
| 596907 | 932 | 948 | eekkdddddddddkkee | 56 | 10082 | 10098 | 1416 | |
| 596717 | 936 | 952 | eekkddddddddkkeee | 14 | 10086 | 10102 | 1417 | |
| 596908 | 936 | 952 | eekkdddddddddkkee | 19 | 10086 | 10102 | 1417 | |
| 596718 | 938 | 954 | eekkddddddddkkeee | 23 | 10088 | 10104 | 1263 | |
| 596909 | 938 | 954 | eekkdddddddddkkee | 8 | 10088 | 10104 | 1263 | |
| 596719 | 949 | 965 | eekkddddddddkkeee | 31 | 10099 | 10115 | 1418 | |
| 596910 | 949 | 965 | eekkdddddddddkkee | 16 | 10099 | 10115 | 1418 | |
Gapmers from the studies described above exhibiting significant in vitro inhibition of SOD-1 mRNA were selected and tested at various doses in HepG2 cells. Benchmark compound ISIS 333611 and other compounds previously disclosed in WO 2005/040180 , including ISIS 146144, 146145, 150445, 150446, 150447, 150454, 150463, 150465, 333606, 333609, and 333611 were also tested.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 20,000 cells per well and transfected using electroporation with 0.813 µM, 1.625 µM, 3.250 µM, 6.500 µM, and 13.000 µM concentrations of modified oligonucleotide, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe set RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells.
The half maximal inhibitory concentration (IC50) of each oligonucleotide is also presented. SOD-1 mRNA levels were significantly reduced in a dose-dependent manner in modified oligonucleotide treated cells.
Table 24
Table 25
Table 26
Table 27
| ISIS No | 0.813 µM | 1.625 µM | 3.250 µM | 6.500 µM | 13.000 µM | |
| 150445 | 7 | 21 | 44 | 56 | 82 | 4.4 |
| 150446 | 15 | 32 | 47 | 71 | 87 | 3.2 |
| 150447 | 26 | 43 | 68 | 81 | 93 | 2.0 |
| 150463 | 16 | 38 | 51 | 66 | 85 | 3.1 |
| 333611 | 18 | 39 | 57 | 66 | 79 | 3.0 |
| 393336 | 18 | 34 | 53 | 69 | 83 | 3.1 |
| 393343 | 24 | 32 | 53 | 73 | 42 | 5.1 |
| 436863 | 18 | 42 | 58 | 72 | 89 | 2.6 |
| 590089 | 28 | 59 | 70 | 82 | 90 | 1.5 |
| 590090 | 34 | 56 | 76 | 82 | 51 | 1.1 |
| 590091 | 30 | 44 | 68 | 84 | 88 | 1.9 |
| 590094 | 16 | 35 | 57 | 73 | 76 | 3.0 |
| 590113 | 34 | 35 | 57 | 73 | 84 | 2.3 |
| ISIS No | 0.813 µM | 1.625 µM | 3.250 µM | 6.500 µM | 13.000 µM | |
| 150465 | 42 | 59 | 77 | 82 | 87 | 1.0 |
| 333611 | 17 | 26 | 40 | 64 | 82 | 3.8 |
| 378879 | 14 | 35 | 63 | 72 | 86 | 2.8 |
| 393371 | 28 | 42 | 57 | 74 | 80 | 2.3 |
| 489520 | 28 | 44 | 64 | 72 | 84 | 2.2 |
| 590177 | 53 | 59 | 69 | 85 | 88 | 0.7 |
| 590178 | 40 | 53 | 71 | 73 | 87 | 1.3 |
| 590180 | 18 | 42 | 51 | 64 | 73 | 3.3 |
| 590187 | 34 | 51 | 68 | 80 | 92 | 1.6 |
| 590188 | 30 | 46 | 61 | 76 | 88 | 2.0 |
| 590189 | 37 | 49 | 68 | 78 | 88 | 1.6 |
| 590190 | 38 | 58 | 77 | 84 | 89 | 1.1 |
| 590191 | 29 | 56 | 71 | 77 | 84 | 1.6 |
| 590192 | 37 | 59 | 72 | 80 | 87 | 1.2 |
| ISIS No | 0.813 µM | 1.625 µM | 3.250 µM | 6.500 µM | 13.000 µM | |
| 146144 | 15 | 58 | 67 | 78 | 64 | 2.2 |
| 146145 | 31 | 53 | 67 | 81 | 90 | 1.6 |
| 333606 | 11 | 39 | 62 | 75 | 91 | 2.7 |
| 333609 | 13 | 37 | 57 | 71 | 85 | 2.9 |
| 333611 | 14 | 30 | 53 | 68 | 86 | 3.2 |
| 590250 | 8 | 19 | 47 | 64 | 84 | 3.9 |
| 590626 | 61 | 72 | 84 | 84 | 87 | 0.2 |
| 592630 | 24 | 33 | 58 | 70 | 85 | 2.7 |
| 592631 | 19 | 48 | 59 | 74 | 88 | 2.3 |
| 592645 | 20 | 31 | 53 | 74 | 89 | 2.8 |
| 592649 | 14 | 32 | 56 | 69 | 82 | 3.2 |
| ISIS No | 0.813 µM | 1.625 µM | 3.250 µM | 6.500 µM | 13.000 µM | |
| 150454 | 13 | 24 | 49 | 69 | 83 | 3.5 |
| 333611 | 28 | 28 | 53 | 68 | 82 | 3.0 |
| 489505 | 13 | 24 | 38 | 56 | 81 | 4.5 |
| 489516 | 25 | 16 | 39 | 61 | 79 | 4.3 |
| 592652 | 11 | 31 | 52 | 74 | 46 | 5.1 |
| 592714 | 8 | 25 | 45 | 69 | 82 | 3.8 |
| 592715 | 18 | 35 | 50 | 70 | 83 | 3.1 |
| 592762 | 44 | 66 | 74 | 81 | 89 | 0.8 |
| 592763 | 50 | 68 | 74 | 86 | 95 | 0.7 |
| 592764 | 26 | 43 | 48 | 76 | 87 | 2.5 |
| 592766 | 36 | 53 | 66 | 77 | 89 | 1.5 |
| 592767 | 25 | 31 | 54 | 70 | 79 | 2.9 |
| 592769 | 35 | 31 | 56 | 73 | 80 | 2.5 |
| 592771 | 34 | 43 | 58 | 70 | 80 | 2.2 |
Gapmers from the studies described above exhibiting significant in vitro inhibition of SOD-1 mRNA were selected and tested at various doses in HepG2 cells. Benchmark compound, ISIS 333611, and ISIS 333625, both of which were previously disclosed in WO 2005/040180 were also tested.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 20,000 cells per well and transfected using electroporation with 0.148 µM, 0.444 µM, 1.330 µM, 4.000 µM, and 12.000 µM concentrations of modified oligonucleotide, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe sets RTS3898 or HTS90 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells.
The half maximal inhibitory concentration (IC50) of each oligonucleotide is also presented. SOD-1 mRNA levels were significantly reduced in a dose-dependent manner in modified oligonucleotide treated cells. Table 28
Table 29
| ISIS No | 0.148 µM | 0.444 µM | 1.330 µM | 4.000 µM | 12.000 µM | |
| 333611 | 6 | 14 | 29 | 51 | 78 | 3.2 |
| 596911 | 8 | 12 | 23 | 54 | 74 | 3.6 |
| 596720 | 7 | 14 | 31 | 55 | 71 | 3.4 |
| 596800 | 44 | 60 | 75 | 84 | 82 | 0.2 |
| 596801 | 33 | 49 | 69 | 79 | 83 | 0.5 |
| 596610 | 16 | 44 | 65 | 78 | 84 | 0.8 |
| 596799 | 20 | 45 | 64 | 75 | 84 | 0.8 |
| 596609 | 17 | 54 | 65 | 75 | 81 | 0.7 |
| 596883 | 13 | 22 | 36 | 45 | 51 | 8.6 |
| 489523 | 16 | 40 | 62 | 78 | 90 | 0.9 |
| 590181 | 5 | 17 | 46 | 70 | 89 | 1.7 |
| 436868 | 10 | 35 | 47 | 69 | 82 | 1.4 |
| 596768 | 16 | 37 | 62 | 82 | 89 | 0.9 |
| 596775 | 36 | 50 | 66 | 83 | 89 | 0.4 |
| ISIS No | 0.148 µM | 0.444 µM | 1.330 µM | 4.000 µM | 12.000 µM | |
| 333625 | 0 | 4 | 17 | 56 | 84 | 3.3 |
| 489532 | 54 | 70 | 78 | 86 | 96 | 0.1 |
| 590154 | 0 | 14 | 25 | 56 | 86 | 2.7 |
| 596173 | 0 | 5 | 25 | 63 | 92 | 2.4 |
| 596174 | 7 | 12 | 37 | 46 | 84 | 2.8 |
| 596178 | 2 | 16 | 40 | 68 | 82 | 2.1 |
| 596179 | 0 | 17 | 41 | 64 | 80 | 2.3 |
| 596308 | 0 | 5 | 22 | 56 | 80 | 3.3 |
| 596572 | 18 | 35 | 62 | 83 | 90 | 0.9 |
| 596589 | 10 | 45 | 61 | 77 | 91 | 0.9 |
| 596600 | 41 | 56 | 71 | 85 | 92 | 0.3 |
| 596602 | 14 | 51 | 74 | 86 | 95 | 0.6 |
| 596789 | 22 | 55 | 69 | 86 | 91 | 0.5 |
| 596795 | 16 | 43 | 64 | 82 | 93 | 0.8 |
Gapmers from the studies described above exhibiting significant in vitro inhibition of SOD-1 mRNA were selected and tested at various doses in HepG2 cells. Benchmark compound, ISIS 333611, and additional compounds including, ISIS 146143, 150442, 195753, 333607, and 333608, were previously disclosed in WO 2005/040180 were also tested.
The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 20,000 cells per well and transfected using electroporation with 0.1875 µM, 0.7500 µM, 3.0000 µM, and 12.0000 µM concentrations of modified oligonucleotide, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe sets RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells.
The half maximal inhibitory concentration (IC50) of each oligonucleotide is also presented. SOD-1 mRNA levels were significantly reduced in a dose-dependent manner in modified oligonucleotide treated cells.
Table 30
Table 31
Table 32
Table 33
Table 34
| ISIS No | 0.1875 µM | 0.75 µM | 3.00 µM | 12.00 µM | |
| 333611 | 0 | 27 | 60 | 91 | 2 |
| 596572 | 38 | 65 | 87 | 96 | 0.3 |
| 596583 | 62 | 89 | 95 | 95 | <0.1 |
| 596590 | 40 | 79 | 89 | 94 | 0.2 |
| 596602 | 40 | 75 | 92 | 98 | 0.2 |
| 596603 | 51 | 79 | 92 | 96 | 0.1 |
| 596604 | 48 | 78 | 91 | 95 | 0.1 |
| 596605 | 50 | 86 | 90 | 97 | 0.1 |
| 596764 | 11 | 67 | 89 | 94 | 0.7 |
| 596768 | 27 | 49 | 82 | 92 | 0.7 |
| 596773 | 32 | 62 | 89 | 98 | 0.4 |
| 596774 | 56 | 89 | 93 | 96 | <0.1 |
| 596775 | 31 | 75 | 90 | 97 | 0.3 |
| 596780 | 24 | 71 | 85 | 98 | 0.5 |
| 596781 | 30 | 80 | 93 | 97 | 0.3 |
| 596791 | 38 | 74 | 89 | 95 | 0.3 |
| 596794 | 43 | 75 | 91 | 97 | 0.2 |
| 596795 | 28 | 66 | 91 | 98 | 0.4 |
| 596796 | 43 | 78 | 93 | 98 | 0.2 |
| ISIS No | 0.1875 µM | 0.75 µM | 3.00 µM | 12.00 µM | |
| 333611 | 0 | 15 | 68 | 95 | 2.1 |
| 596589 | 35 | 70 | 90 | 97 | 0.3 |
| 596789 | 38 | 71 | 89 | 97 | 0.3 |
| 596600 | 41 | 73 | 89 | 95 | 0.2 |
| 596582 | 30 | 71 | 87 | 95 | 0.4 |
| 596784 | 26 | 68 | 89 | 95 | 0.4 |
| 596787 | 44 | 67 | 89 | 94 | 0.2 |
| 596779 | 29 | 71 | 89 | 97 | 0.4 |
| 596792 | 37 | 63 | 83 | 95 | 0.4 |
| 596782 | 27 | 61 | 85 | 96 | 0.5 |
| 596765 | 34 | 59 | 87 | 95 | 0.4 |
| 596793 | 27 | 65 | 88 | 96 | 0.5 |
| 596570 | 25 | 60 | 84 | 91 | 0.6 |
| 596769 | 21 | 64 | 85 | 96 | 0.6 |
| 596783 | 10 | 57 | 84 | 94 | 0.9 |
| 596584 | 26 | 67 | 84 | 93 | 0.5 |
| 596571 | 37 | 71 | 81 | 92 | 0.3 |
| 596598 | 30 | 62 | 81 | 94 | 0.5 |
| 596588 | 11 | 64 | 87 | 95 | 0.7 |
| ISIS No | 0.1875 µM | 0.75 µM | 3.00 µM | 12.00 µM | |
| 146143 | 6 | 12 | 51 | 88 | 2.5 |
| 150442 | 10 | 21 | 39 | 90 | 2.5 |
| 195753 | 13 | 23 | 48 | 77 | 2.8 |
| 333607 | 17 | 26 | 59 | 83 | 1.9 |
| 333608 | 0 | 2 | 28 | 92 | 3.7 |
| 333611 | 0 | 13 | 52 | 91 | 2.4 |
| 596573 | 26 | 51 | 77 | 91 | 0.8 |
| 596577 | 32 | 55 | 78 | 93 | 0.6 |
| 596591 | 23 | 51 | 74 | 91 | 0.8 |
| 596592 | 18 | 48 | 66 | 86 | 1.1 |
| 596593 | 16 | 58 | 78 | 87 | 0.8 |
| 596596 | 4 | 49 | 72 | 87 | 1.3 |
| 596761 | 28 | 55 | 74 | 91 | 0.7 |
| 596762 | 0 | 47 | 75 | 90 | 1.3 |
| 596763 | 0 | 40 | 78 | 92 | 1.5 |
| 596766 | 4 | 50 | 68 | 86 | 1.3 |
| 596785 | 10 | 47 | 77 | 91 | 1.1 |
| 596786 | 0 | 45 | 75 | 97 | 1.3 |
| 596788 | 9 | 52 | 81 | 95 | 1 |
| ISIS No | 0.1875 µM | 0.75 µM | 3.00 µM | 12.00 µM | |
| 333611 | 3 | 22 | 60 | 92 | 2 |
| 596302 | 9 | 27 | 59 | 89 | 1.9 |
| 596308 | 29 | 47 | 82 | 96 | 0.7 |
| 596309 | 13 | 42 | 75 | 92 | 1.1 |
| 596310 | 13 | 16 | 48 | 81 | 2.8 |
| 596313 | 15 | 37 | 70 | 88 | 1.3 |
| 596314 | 18 | 45 | 74 | 92 | 1 |
| 596606 | 55 | 78 | 87 | 93 | 0.1 |
| 596607 | 44 | 71 | 83 | 84 | 0.2 |
| 596608 | 46 | 74 | 84 | 81 | 0.1 |
| 596609 | 30 | 61 | 79 | 87 | 0.5 |
| 596610 | 39 | 69 | 82 | 86 | 0.3 |
| 596612 | 16 | 50 | 62 | 77 | 1.4 |
| 596797 | 67 | 84 | 94 | 96 | <0.1 |
| 596798 | 42 | 68 | 86 | 89 | 0.2 |
| 596799 | 35 | 66 | 83 | 87 | 0.4 |
| 596800 | 45 | 73 | 84 | 87 | 0.2 |
| 596801 | 40 | 67 | 86 | 88 | 0.3 |
| 596803 | 28 | 41 | 63 | 71 | 1.4 |
| ISIS No | 0.1875 µM | 0.75 µM | 3.00 µM | 12.00 µM | |
| 333611 | 0 | 30 | 56 | 69 | 3.1 |
| 590475 | 19 | 39 | 69 | 88 | 1.2 |
| 590625 | 19 | 51 | 74 | 85 | 1.0 |
| 590626 | 42 | 72 | 88 | 90 | 0.2 |
| 590627 | 16 | 42 | 70 | 84 | 1.0 |
| 590634 | 45 | 72 | 86 | 92 | 0.2 |
| 590635 | 39 | 60 | 80 | 90 | 0.4 |
| 590644 | 44 | 62 | 80 | 86 | 0.3 |
| 590650 | 34 | 56 | 82 | 93 | 0.5 |
| 590653 | 52 | 78 | 86 | 85 | 0.1 |
| 590655 | 35 | 71 | 79 | 82 | 0.3 |
| 596530 | 25 | 22 | 72 | 79 | 2.0 |
| 596531 | 8 | 38 | 74 | 96 | 1.2 |
| 596559 | 15 | 36 | 79 | 95 | 1.1 |
| 596721 | 14 | 47 | 82 | 97 | 0.9 |
| 596723 | 12 | 47 | 79 | 94 | 1.0 |
| 596726 | 24 | 42 | 80 | 94 | 0.9 |
| 596735 | 7 | 32 | 77 | 96 | 1.3 |
| 596736 | 25 | 52 | 82 | 97 | 0.7 |
Additional gapmers were designed based on the sequences of the oligonucleotides disclosed in studies described above. The oligonucleotides were designed as 5-10-5 MOE, 5-8-5 MOE, and deoxy, MOE and cEt oligonucleotides. The 5-10-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of ten 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' direction comprising five nucleosides each. The 5-8-5 MOE gapmers are 18 nucleosides in length, wherein the central gap segment is comprised of eight 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' direction comprising five nucleosides each. Each nucleoside in the 5' wing segment and each nucleoside in the 3' wing segment has a 2'-MOE modification. The deoxy, MOE and cEt oligonucleotides are 16 or 17 nucleosides in length wherein each nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety. The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar. The internucleoside linkages throughout each gapmer are either phosphodiester or phosphorothioate linkages. The internucleoside linkages of each oligonucleotide are denoted in the Backbone Chemistry column, where 'o' indicates a phosphodiester linkage and 's' denotes a phosphorothioate linkage. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). Table 35
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | Sugar Modifications | Backbone Chemistry | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 611458 | 226 | 245 | eeeeeddddddddddeeeee | sooosssssssssssooos | 4980 | 4999 | 23 | |
| 654335 | 233 | 248 | ekddddddddekekee | sossssssssoooss | 4987 | 5002 | 1420 | |
| 611474 | 234 | 253 | eeeeeddddddddddeeeee | sooosssssssssssooos | 4988 | 5007 | 149 | |
| 654301 | 234 | 251 | eeeeeddddddddeeeee | sooosssssssssooss | 4988 | 5005 | 1421 | |
| 654336 | 234 | 249 | ekddddddddekekee | sossssssssoooss | 4988 | 5003 | 1422 | |
| 654302 | 235 | 252 | eeeeeddddddddeeeee | sooosssssssssooss | 4989 | 5006 | 1423 | |
| 654319 | 235 | 250 | kekeddddddddekek | sooossssssssoss | 4989 | 5004 | 1424 | |
| 654337 | 235 | 250 | ekddddddddekekee | sossssssssoooss | 4989 | 5004 | 1424 | |
| 654303 | 236 | 253 | eeeeeddddddddeeeee | sooosssssssssooss | 4990 | 5007 | 1425 | |
| 654320 | 236 | 251 | kekeddddddddekek | sooossssssssoss | 4990 | 5005 | 1426 | |
| 654321 | 237 | 252 | kekeddddddddekek | sooossssssssoss | 4991 | 5006 | 1427 | |
| 611475 | 321 | 340 | eeeeeddddddddddeeeee | sooosssssssssssooos | 7637 | 7656 | 172 | |
| 611460 | 588 | 607 | eeeeeddddddddddeeeee | sooosssssssssssooos | 9738 | 9757 | 47 | |
| 654304 | 663 | 680 | eeeeeddddddddeeeee | sooosssssssssooss | 9813 | 9830 | 1429 | |
| 654305 | 664 | 681 | eeeeeddddddddeeeee | sooosssssssssooss | 9814 | 9831 | 1430 | |
| 654340 | 664 | 679 | ekddddddddekekee | sossssssssoooss | 9814 | 9829 | 1431 | |
| 611492 | 665 | 684 | eeeeeddddddddddeeeee | sooosssssssssssooos | 9815 | 9834 | 725 | |
| 654306 | 665 | 682 | eeeeeddddddddeeeee | sooosssssssssooss | 9815 | 9832 | 1432 | |
| 654323 | 665 | 680 | kekeddddddddekek | sooossssssssoss | 9815 | 9830 | 1433 | |
| 654341 | 665 | 680 | ekddddddddekekee | sossssssssoooss | 9815 | 9830 | 1433 | |
| 611500 | 666 | 685 | eeeeeddddddddddeeeee | sooosssssssssssooos | 9816 | 9835 | 823 | |
| 612941 | 666 | 682 | eekkdddddddddkkee | sooosssssssssoss | 9816 | 9832 | 1342 | |
| 654307 | 666 | 683 | eeeeeddddddddeeeee | sooosssssssssooss | 9816 | 9833 | 1434 | |
| 654324 | 666 | 681 | kekeddddddddekek | sooossssssssoss | 9816 | 9831 | 1435 | |
| 654342 | 666 | 681 | ekddddddddekekee | sossssssssoooss | 9816 | 9831 | 1435 | |
| 654308 | 667 | 684 | eeeeeddddddddeeeee | sooosssssssssooss | 9817 | 9834 | 1436 | |
| 612925 | 676 | 692 | eekkddddddddkkeee | soosssssssssooss | 9826 | 9842 | 1348 | |
| 612944 | 676 | 692 | eekkdddddddddkkee | sooosssssssssoss | 9826 | 9842 | 1348 | |
| 654343 | 677 | 692 | ekddddddddekekee | sossssssssoooss | 9827 | 9842 | 1437 | |
| 612927 | 678 | 694 | eekkddddddddkkeee | soosssssssssooss | 9828 | 9844 | 1350 | |
| 654309 | 678 | 695 | eeeeeddddddddeeeee | sooosssssssssooss | 9828 | 9845 | 1438 | |
| 612928 | 679 | 695 | eekkddddddddkkeee | soosssssssssooss | 9829 | 9845 | 1351 | |
| 654310 | 679 | 696 | eeeeeddddddddeeeee | sooosssssssssooss | 9829 | 9846 | 1439 | |
| 654311 | 680 | 697 | eeeeeddddddddeeeee | sooosssssssssooss | 9830 | 9847 | 1440 | |
| 654327 | 680 | 695 | kekeddddddddekek | sooossssssssoss | 9830 | 9845 | 1441 | |
| 654346 | 680 | 695 | ekddddddddekekee | sossssssssoooss | 9830 | 9845 | 1441 | |
| 611497 | 681 | 700 | eeeeeddddddddddeeeee | sooosssssssssssooos | 9831 | 9850 | 733 | |
| 612948 | 681 | 697 | eekkdddddddddkkee | sooosssssssssoss | 9831 | 9847 | 1352 | |
| 654312 | 681 | 698 | eeeeeddddddddeeeee | sooosssssssssooss | 9831 | 9848 | 1442 | |
| 654328 | 681 | 696 | kekeddddddddekek | sooossssssssoss | 9831 | 9846 | 1443 | |
| 654347 | 681 | 696 | ekddddddddekekee | sossssssssoooss | 9831 | 9846 | 1443 | |
| 654313 | 682 | 699 | eeeeeddddddddeeeee | sooosssssssssooss | 9832 | 9849 | 1444 | |
| 654329 | 682 | 697 | kekeddddddddekek | sooossssssssoss | 9832 | 9847 | 1445 | |
| 654348 | 682 | 697 | ekddddddddekekee | sossssssssoooss | 9832 | 9847 | 1445 | |
| 612949 | 683 | 699 | eekkdddddddddkkee | sooosssssssssoss | 9833 | 9849 | 1172 | |
| 654314 | 683 | 700 | eeeeeddddddddeeeee | sooosssssssssooss | 9833 | 9850 | 1446 | |
| 654330 | 683 | 698 | kekeddddddddekek | sooossssssssoss | 9833 | 9848 | 1447 | |
| 612931 | 684 | 700 | eekkddddddddkkeee | soosssssssssooss | 9834 | 9850 | 1173 | |
| 654315 | 684 | 701 | eeeeeddddddddeeeee | sooosssssssssooss | 9834 | 9851 | 1448 | |
| 654331 | 684 | 699 | kekeddddddddekek | sooossssssssoss | 9834 | 9849 | 1449 | |
| 654350 | 684 | 699 | ekddddddddekekee | sossssssssoooss | 9834 | 9849 | 1449 | |
| 654316 | 685 | 702 | eeeeeddddddddeeeee | sooosssssssssooss | 9835 | 9852 | 1450 | |
| 612918 | 686 | 702 | eeekkdddddddkkeee | soosssssssssooss | 9836 | 9852 | 1175 | |
| 612932 | 686 | 702 | eekkddddddddkkeee | soosssssssssooss | 9836 | 9852 | 1175 | |
| 654317 | 686 | 703 | eeeeeddddddddeeeee | sooosssssssssooss | 9836 | 9853 | 1451 | |
| 654333 | 686 | 701 | kekeddddddddekek | sooossssssssoss | 9836 | 9851 | 1452 | |
| 654352 | 686 | 701 | ekddddddddekekee | sossssssssoooss | 9836 | 9851 | 1452 | |
| 654318 | 687 | 704 | eeeeeddddddddeeeee | sooosssssssssooss | 9837 | 9854 | 1453 | |
| 654334 | 687 | 702 | kekeddddddddekek | sooossssssssoss | 9837 | 9852 | 1454 | |
The newly designed oligonucleotides were tested at various doses in HepG2 cells. The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 20,000 cells per well and transfected using electroporation with 0.222 µM, 0.667 µM, 2.000 µM, and 6.000 µM concentrations of modified oligonucleotide, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe sets RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells.
The half maximal inhibitory concentration (IC50) of each oligonucleotide is also presented. SOD-1 mRNA levels were significantly reduced in a dose-dependent manner in modified oligonucleotide treated cells.
Table 36
Table 37
Table 38
Table 39
| ISIS No | 0.222 µM | 0.667 µM | 2.000 µM | 6.000 µM | |
| 333611 | 0 | 28 | 53 | 77 | 1.9 |
| 611458 | 0 | 21 | 50 | 79 | 2.0 |
| 611460 | 24 | 34 | 55 | 79 | 1.3 |
| 611474 | 14 | 32 | 55 | 79 | 1.5 |
| 611475 | 0 | 16 | 35 | 70 | 3.0 |
| 611492 | 38 | 70 | 88 | 95 | 0.3 |
| 611497 | 28 | 55 | 80 | 89 | 0.6 |
| 611500 | 25 | 50 | 73 | 92 | 0.7 |
| 612918 | 51 | 70 | 74 | 80 | <0.2 |
| 612925 | 53 | 73 | 90 | 89 | <0.2 |
| 612927 | 64 | 89 | 92 | 94 | <0.2 |
| 612928 | 67 | 90 | 94 | 97 | <0.2 |
| 612931 | 68 | 76 | 84 | 86 | <0.2 |
| 612932 | 61 | 73 | 88 | 91 | <0.2 |
| 612941 | 62 | 78 | 91 | 95 | <0.2 |
| 612944 | 47 | 71 | 82 | 92 | 0.2 |
| 612948 | 76 | 90 | 93 | 94 | <0.2 |
| 612949 | 58 | 68 | 83 | 96 | <0.2 |
| 654301 | 7 | 4 | 17 | 42 | >6.0 |
| ISIS No | 0.222 µM | 0.667 µM | 2.000 µM | 6.000 µM | |
| 333611 | 14 | 20 | 35 | 69 | 3.0 |
| 611458 | 11 | 27 | 36 | 68 | 2.9 |
| 654302 | 0 | 8 | 38 | 48 | 6.2 |
| 654303 | 8 | 29 | 46 | 76 | 1.9 |
| 654304 | 7 | 28 | 54 | 79 | 1.7 |
| 654305 | 28 | 59 | 73 | 85 | 0.6 |
| 654306 | 38 | 62 | 82 | 94 | 0.4 |
| 654307 | 9 | 43 | 65 | 86 | 1.1 |
| 654308 | 14 | 31 | 54 | 84 | 1.4 |
| 654309 | 0 | 17 | 47 | 72 | 2.4 |
| 654310 | 10 | 24 | 28 | 53 | 6.6 |
| 654311 | 45 | 73 | 78 | 87 | 0.2 |
| 654312 | 14 | 39 | 59 | 77 | 1.3 |
| 654313 | 20 | 43 | 56 | 81 | 1.2 |
| 654314 | 33 | 58 | 74 | 86 | 0.5 |
| 654315 | 21 | 47 | 64 | 84 | 0.9 |
| 654316 | 19 | 30 | 46 | 70 | 2.0 |
| 654317 | 13 | 46 | 57 | 70 | 1.4 |
| 654318 | 17 | 42 | 54 | 76 | 1.4 |
| ISIS No | 0.222 µM | 0.667 µM | 2.000 µM | 6.000 µM | |
| 333611 | 14 | 19 | 50 | 73 | 2.1 |
| 611458 | 9 | 22 | 39 | 72 | 2.5 |
| 654319 | 19 | 9 | 31 | 61 | 5.1 |
| 654320 | 6 | 16 | 20 | 59 | 5.9 |
| 654321 | 8 | 14 | 51 | 76 | 2.1 |
| 654323 | 55 | 73 | 89 | 95 | <0.2 |
| 654324 | 54 | 78 | 89 | 96 | <0.2 |
| 654327 | 53 | 82 | 91 | 96 | <0.2 |
| 654328 | 73 | 90 | 93 | 97 | <0.2 |
| 654329 | 58 | 78 | 86 | 94 | <0.2 |
| 654330 | 42 | 54 | 69 | 86 | 0.4 |
| 654331 | 53 | 78 | 82 | 90 | <0.2 |
| 654333 | 50 | 67 | 81 | 86 | 0.2 |
| 654334 | 55 | 68 | 78 | 88 | <0.2 |
| 654335 | 15 | 31 | 58 | 81 | 1.4 |
| 654336 | 21 | 36 | 60 | 75 | 1.3 |
| 654337 | 16 | 34 | 58 | 80 | 1.4 |
| 654340 | 36 | 69 | 83 | 95 | 0.4 |
| 654341 | 43 | 58 | 79 | 91 | 0.3 |
| ISIS No | 0.222 µM | 0.667 µM | 2.00 µM | 6.00 µM | |
| 333611 | 0 | 6 | 38 | 64 | 3.6 |
| 611458 | 3 | 14 | 36 | 63 | 3.6 |
| 654342 | 40 | 60 | 80 | 93 | 0.4 |
| 654343 | 64 | 81 | 90 | 94 | <0.2 |
| 654346 | 52 | 73 | 84 | 93 | <0.2 |
| 654347 | 21 | 38 | 58 | 81 | 1.2 |
| 654348 | 44 | 63 | 82 | 94 | 0.3 |
| 654350 | 40 | 63 | 76 | 86 | 0.3 |
| 654352 | 54 | 79 | 84 | 88 | <0.2 |
Additional gapmers were designed based on the sequences of the oligonucleotides disclosed in studies described above. The oligonucleotides were designed as deoxy, MOE and cEt oligonucleotides. The deoxy, MOE and cEt oligonucleotides are 16 or 17 nucleosides in length wherein each nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety. The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar. The internucleoside linkages throughout each gapmer are either phosphodiester or phosphorothioate linkages. The internucleoside linkages of each oligonucleotide are denoted in the Backbone Chemistry column, where 'o' indicates a phosphodiester linkage and 's' indicates a phosphorothioate linkage. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000).
Table 40
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | Sugar Modifications | Backbone Chemistry | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 612916 | 664 | 680 | eeekkdddddddkkeee | soosssssssssooss | 9814 | 9830 | 1170 | |
| 612947 | 679 | 695 | eekkdddddddddkkee | sooosssssssssoss | 9829 | 9845 | 1351 | |
| 654322 | 664 | 679 | kekeddddddddekek | sooossssssssoss | 9814 | 9829 | 1431 | |
| 654325 | 667 | 682 | kekeddddddddekek | sooossssssssoss | 9817 | 9832 | 1455 | |
| 654326 | 679 | 694 | kekeddddddddekek | sooossssssssoss | 9829 | 9844 | 1456 | |
| 654332 | 685 | 700 | kekeddddddddekek | sooossssssssoss | 9835 | 9850 | 1457 | |
| 654338 | 662 | 677 | ekddddddddekekee | sossssssssoooss | 9812 | 9827 | 1458 | |
| 654339 | 663 | 678 | ekddddddddekekee | sossssssssoooss | 9813 | 9828 | 1459 | |
| 654344 | 678 | 693 | ekddddddddekekee | sossssssssoooss | 9828 | 9843 | 1460 | |
| 654345 | 679 | 694 | ekddddddddekekee | sossssssssoooss | 9829 | 9844 | 1456 | |
| 654349 | 683 | 698 | ekddddddddekekee | sossssssssoooss | 9833 | 9848 | 1447 | |
| 654351 | 685 | 700 | ekddddddddekekee | sossssssssoooss | 9835 | 9850 | 1457 | |
The newly designed oligonucleotides were tested at various doses in A431 cells. The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 5,000 cells per well and modified oligonucleotides were added to the media at 0.12 µM, 0.60 µM, 3.00 µM, and 15.00 µM concentrations of modified oligonucleotide for free uptake by the cells, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe sets RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells.
Table 41
Table 42
Table 43
Table 44
| ISIS No | 0.12 µM | 0.60 µM | 3.00 µM | 15.00 µM |
| 333611 | 0 | 7 | 17 | 31 |
| 611458 | 5 | 4 | 4 | 10 |
| 612916 | 4 | 13 | 26 | 37 |
| 612918 | 12 | 26 | 45 | 47 |
| 612944 | 1 | 4 | 21 | 29 |
| 612947 | 12 | 48 | 54 | 72 |
| 654305 | 7 | 15 | 39 | 52 |
| 654306 | 0 | 25 | 29 | 50 |
| 654313 | 1 | 15 | 36 | 50 |
| 654314 | 2 | 35 | 52 | 67 |
| 654321 | 0 | 8 | 8 | 18 |
| 654322 | 0 | 13 | 36 | 59 |
| 654329 | 7 | 7 | 41 | 66 |
| 654330 | 6 | 14 | 15 | 32 |
| 654337 | 0 | 0 | 7 | 21 |
| 654338 | 3 | 3 | 2 | 11 |
| 654345 | 1 | 9 | 22 | 46 |
| 654346 | 0 | 7 | 21 | 46 |
| ISIS No | 0.12 µM | 0.60 µM | 3.00 µM | 15.00 µM |
| 333611 | 0 | 0 | 0 | 2 |
| 611460 | 0 | 0 | 0 | 30 |
| 611474 | 0 | 0 | 11 | 0 |
| 612925 | 2 | 4 | 12 | 52 |
| 612927 | 0 | 38 | 54 | 68 |
| 612948 | 25 | 69 | 89 | 95 |
| 612949 | 22 | 57 | 73 | 84 |
| 654307 | 42 | 23 | 26 | 45 |
| 654308 | 2 | 31 | 9 | 18 |
| 654315 | 0 | 8 | 39 | 52 |
| 654316 | 0 | 18 | 26 | 45 |
| 654323 | 15 | 14 | 16 | 52 |
| 654324 | 12 | 22 | 21 | 34 |
| 654331 | 7 | 35 | 66 | 78 |
| 654332 | 2 | 31 | 47 | 61 |
| 654339 | 1 | 27 | 32 | 47 |
| 654340 | 37 | 0 | 22 | 12 |
| 654347 | 20 | 5 | 12 | 33 |
| 654348 | 2 | 19 | 33 | 62 |
| ISIS No | 0.12 µM | 0.60 µM | 3.00 µM | 15.00 µM |
| 333611 | 0 | 0 | 0 | 1 |
| 611475 | 0 | 17 | 0 | 16 |
| 611492 | 13 | 24 | 41 | 62 |
| 612928 | 12 | 36 | 49 | 72 |
| 612931 | 31 | 68 | 83 | 86 |
| 654301 | 2 | 0 | 0 | 9 |
| 654302 | 0 | 8 | 3 | 0 |
| 654309 | 18 | 7 | 11 | 9 |
| 654310 | 13 | 19 | 22 | 7 |
| 654317 | 3 | 0 | 1 | 20 |
| 654318 | 4 | 0 | 33 | 17 |
| 654325 | 0 | 0 | 0 | 14 |
| 654326 | 0 | 15 | 17 | 48 |
| 654333 | 19 | 18 | 36 | 55 |
| 654334 | 0 | 0 | 0 | 6 |
| 654341 | 0 | 9 | 0 | 25 |
| 654342 | 0 | 0 | 0 | 18 |
| 654349 | 0 | 13 | 31 | 49 |
| 654350 | 10 | 32 | 66 | 79 |
| ISIS No | 0.12 µM | 0.60 µM | 3.00 µM | 15.00 µM |
| 333611 | 5 | 0 | 7 | 3 |
| 611497 | 16 | 49 | 60 | 75 |
| 611500 | 9 | 8 | 21 | 49 |
| 612932 | 17 | 8 | 26 | 37 |
| 612941 | 4 | 12 | 36 | 51 |
| 654303 | 0 | 1 | 0 | 5 |
| 654304 | 9 | 10 | 27 | 43 |
| 654311 | 15 | 51 | 68 | 84 |
| 654312 | 6 | 26 | 29 | 33 |
| 654319 | 3 | 44 | 2 | 8 |
| 654320 | 4 | 12 | 5 | 12 |
| 654327 | 3 | 45 | 65 | 81 |
| 654328 | 15 | 44 | 73 | 85 |
| 654335 | 2 | 0 | 0 | 12 |
| 654336 | 0 | 0 | 0 | 0 |
| 654343 | 0 | 7 | 26 | 59 |
| 654344 | 10 | 30 | 51 | 72 |
| 654351 | 10 | 22 | 48 | 77 |
| 654352 | 8 | 26 | 57 | 76 |
Additional gapmers were designed based on the sequences of the oligonucleotides disclosed in studies described above. The oligonucleotides were designed as 5-10-5 MOE gapmers, 4-8-5 MOE gapmers, 5-8-5 MOE gapmers, 5-8-7 MOE gapmers, 6-8-6 MOE gapmers, 6-9-5 MOE gapmers, or deoxy, MOE and cEt oligonucleotides.
The 5-10-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of ten 2'-deoxynucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five nucleosides each. The 4-8-5 MOE gapmers are 17 nucleosides in length, wherein the central gap segment is comprised of eight 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising four and five nucleosides respectively. The 5-8-5 MOE gapmers are 18 nucleosides in length, wherein the central gap segment is comprised of eight 2'-deoxynucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five nucleosides each. The 5-8-7 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of eight 2'-deoxynucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five and seven nucleosides respectively. The 6-8-6 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of eight 2'-deoxynucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising six nucleosides each. The 6-9-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of nine 2'-deoxynucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising six and five nucleosides respectively. Each nucleoside in the 5' wing segment and each nucleoside in the 3' wing segment has a 2'-MOE modification.
The deoxy, MOE and cEt oligonucleotides are 17 nucleosides in length wherein each nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety. The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar.
The internucleoside linkages throughout each gapmer are either phosphodiester or phosphorothioate linkages. The internucleoside linkages of each oligonucleotide are denoted in the Backbone Chemistry column, where 'o' indicates a phosphodiester linkage and 's' indicates a phosphorothioate linkage. All cytosine residues throughout each gapmer are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Tables below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000). Table 45
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | Motif | Sugar Modifications | Backbone Chemistry | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 666846 | 665 | 684 | 5-10-5 MOE | eeeeeddddddddddeeeee | soooossssssssssooss | 9815 | 9834 | 725 | |
| 666849 | 665 | 684 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooss | 9815 | 9834 | 725 | |
| 666853 | 665 | 684 | 5-10-5 MOE | eeeeeddddddddddeeeee | sososssssssssssosos | 9815 | 9834 | 725 | |
| 666859 | 679 | 695 | Deoxy, MOE and cEt | eeeeddddddddkkeee | soosssssssssooss | 9829 | 9845 | 1351 | |
| 666861 | 679 | 695 | Deoxy, MOE and cEt | ekekddddddddeeeee | soosssssssssooss | 9829 | 9845 | 1351 | |
| 666867 | 684 | 700 | Deoxy, MOE and cEt | eekkddddddddeeeee | soosssssssssooss | 9834 | 9850 | 1173 | |
| 666869 | 684 | 700 | Deoxy, MOE and cEt | ekekddddddddkekee | soosssssssssooss | 9834 | 9850 | 1173 | |
| 666870 | 684 | 700 | Deoxy, MOE and cEt | ekekddddddddeeeee | soosssssssssooss | 9834 | 9850 | 1173 | |
| 666919 | 666 | 682 | Deoxy, MOE and cEt | eeeedddddddddkkee | sooosssssssssoss | 9816 | 9832 | 1342 | |
| 666921 | 666 | 682 | Deoxy, MOE and cEt | eeeeeddddddddkkee | sooosssssssssoss | 9816 | 9832 | 1342 | |
| 666922 | 666 | 682 | Deoxy, MOE and cEt | eeeekddddddddkeee | sooosssssssssoss | 9816 | 9832 | 1342 | |
| 684059 | 676 | 692 | Deoxy, MOE and cEt | eeekddddddddkeeee | soosssssssssooss | 9826 | 9842 | 1348 | |
| 684064 | 676 | 692 | Deoxy, MOE and cEt | eeeeddddddddkekee | soosssssssssooss | 9826 | 9842 | 1348 | |
| 684068 | 676 | 692 | 4-8-5 MOE | eeeeddddddddeeeee | soosssssssssooss | 9826 | 9842 | 1348 | |
| 684087 | 590 | 607 | 5-8-5 MOE | eeeeeddddddddeeeee | sooosssssssssooss | 9740 | 9757 | 613 | |
| 684088 | 167 | 184 | 5-8-5 MOE | eeeeeddddddddeeeee | sooosssssssssooss | 973 | 990 | 1419 | |
| 684095 | 167 | 186 | 5-10-5 MOE | eeeeeddddddddddeeeee | soooossssssssssooss | 973 | 992 | 21 | |
| 684097 | 167 | 186 | 5-8-7 MOE | eeeeeddddddddeeeeeee | sooossssssssssoooss | 973 | 992 | 21 | |
| 684101 | 588 | 607 | 6-8-6 MOE | eeeeeeddddddddeeeeee | sooossssssssssoooss | 9738 | 9757 | 47 | |
| 684102 | 588 | 607 | 5-8-7 MOE | eeeeeddddddddeeeeeee | sooossssssssssoooss | 9738 | 9757 | 47 | |
| 684104 | 588 | 607 | 6-9-5 MOE | eeeeeedddddddddeeeee | soooossssssssssooss | 9738 | 9757 | 47 | |
The newly designed oligonucleotides were tested at various doses in A431 cells. The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 5,000 cells per well and modified oligonucleotides were added to the media at 0.062 µM, 0.185 µM, 0.556 µM, 1.667 µM, 5.000 µM, and 15.000 µM concentrations of modified oligonucleotide for free uptake by the cells, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe sets RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells.
Table 46
Table 47
| ISIS No | 0.062 µM | 0.185 µM | 0.556 µM | 1.667 µM | 5.000 µM | 15.000 µM | |
| 666846 | 18 | 28 | 45 | 70 | 69 | 81 | 0.8 |
| 666919 | 0 | 1 | 13 | 28 | 42 | 55 | 11.0 |
| 666849 | 33 | 29 | 52 | 62 | 74 | 82 | 0.6 |
| 666921 | 2 | 4 | 15 | 19 | 37 | 44 | >15 |
| 666853 | 20 | 29 | 49 | 69 | 76 | 83 | 0.7 |
| 666922 | 8 | 7 | 30 | 33 | 66 | 59 | 4.1 |
| 666859 | 26 | 30 | 58 | 64 | 68 | 78 | 0.6 |
| 666861 | 6 | 21 | 44 | 76 | 68 | 77 | 1.1 |
| 666867 | 16 | 43 | 65 | 68 | 79 | 83 | 0.5 |
| 666869 | 52 | 68 | 79 | 88 | 89 | 91 | <0.06 |
| 666870 | 24 | 37 | 57 | 77 | 81 | 86 | 0.4 |
| ISIS No | 0.062 µM | 0.185 µM | 0.556 µM | 1.667 µM | 5.000 µM | 15.000 µM | |
| 684059 | 7 | 18 | 38 | 53 | 68 | 79 | 1.5 |
| 684102 | 0 | 9 | 0 | 0 | 4 | 0 | >15 |
| 684064 | 12 | 19 | 29 | 38 | 51 | 61 | 5.0 |
| 684104 | 0 | 0 | 0 | 0 | 0 | 4 | >15 |
| 684068 | 0 | 4 | 10 | 33 | 50 | 56 | 8.0 |
| 684087 | 3 | 1 | 29 | 0 | 0 | 27 | >15 |
| 684088 | 10 | 11 | 11 | 3 | 4 | 18 | >15 |
| 684095 | 12 | 13 | 14 | 4 | 7 | 18 | >15 |
| 684097 | 8 | 4 | 5 | 4 | 3 | 9 | >15 |
| 684101 | 7 | 0 | 0 | 23 | 6 | 14 | >15 |
The newly designed oligonucleotides were also tested at various doses in SH-SY5Y cells. The modified oligonucleotides were tested in a series of experiments that had similar culture conditions. The results for each experiment are presented in separate tables shown below. Cells were plated at a density of 20,000 cells per well and modified oligonucleotides transfected using electroporation at 0.062 µM, 0.185 µM, 0.556 µM, 1.667 µM, 5.000 µM, and 15.000 µM concentrations of modified oligonucleotide, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR. Human primer probe set RTS3898 was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells.
Table 48
Table 49
| ISIS No | 0.062 µM | 0.185 µM | 0.556 µM | 1.667 µM | 5.000 µM | 15.000 µM | |
| 666846 | 0 | 17 | 49 | 62 | 83 | 91 | 0.9 |
| 666919 | 10 | 3 | 23 | 35 | 77 | 78 | 2.2 |
| 666849 | 10 | 10 | 33 | 61 | 81 | 92 | 1.1 |
| 666921 | 0 | 0 | 12 | 30 | 56 | 68 | 4.8 |
| 666853 | 0 | 17 | 39 | 59 | 85 | 82 | 1.3 |
| 666922 | 9 | 0 | 12 | 33 | 65 | 76 | 3.2 |
| 666859 | 11 | 44 | 53 | 75 | 77 | 93 | 0.5 |
| 666861 | 0 | 0 | 34 | 61 | 81 | 90 | 1.4 |
| 666867 | 33 | 10 | 43 | 61 | 81 | 77 | 0.9 |
| 666869 | 38 | 49 | 61 | 83 | 81 | 84 | 0.2 |
| 666870 | 3 | 6 | 48 | 69 | 77 | 87 | 1.1 |
| ISIS No | 0.062 µM | 0.185 µM | 0.556 µM | 1.667 µM | 5.000 µM | 15.000 µM | |
| 684059 | 4 | 30 | 51 | 68 | 88 | 92 | 0.7 |
| 684102 | 5 | 2 | 16 | 25 | 36 | 61 | 12.0 |
| 684064 | 15 | 27 | 52 | 63 | 79 | 92 | 0.7 |
| 684104 | 0 | 3 | 20 | 38 | 61 | 84 | 2.6 |
| 684068 | 0 | 4 | 32 | 37 | 61 | 83 | 2.3 |
| 684087 | 0 | 3 | 21 | 31 | 47 | 66 | 5.8 |
| 684088 | 13 | 4 | 5 | 40 | 52 | 77 | 3.9 |
| 684095 | 16 | 5 | 19 | 36 | 68 | 80 | 2.4 |
| 684097 | 11 | 15 | 9 | 30 | 59 | 76 | 3.6 |
| 684101 | 0 | 0 | 8 | 23 | 49 | 66 | 6.6 |
Gapmers from the studies described above, including benchmark compound ISIS 333611, which was previously disclosed in WO 2005/040180 , were tested in an SOD-1 transgenic rat model (Taconic, Cat# 2148-F and 2148-M). These hemizygous rats express mutant human SOD-1 in the spinal cord.
Additional gapmers were designed based on the sequences of the oligonucleotides disclosed in studies described above. The oligonucleotides were designed as 5-9-5 MOE gapmers, 5-10-5 MOE gapmers or deoxy, MOE and cEt oligonucleotides. The 5-9-5 MOE gapmers are 19 nucleosides in length, wherein the central gap segment is comprised of nine 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five nucleosides each. The 5-10-5 MOE gapmers are 20 nucleosides in length, wherein the central gap segment is comprised of ten 2'-deoxyribonucleosides and is flanked by wing segments on the 5' direction and the 3' directions comprising five nucleosides each. Each nucleoside in the 5' wing segment and each nucleoside in the 3' wing segment has a 2'-MOE modification. The deoxy, MOE and cEt oligonucleotides are 17 nucleosides in length wherein each nucleoside has a MOE sugar modification, a cEt sugar modification, or a deoxy moiety The sugar chemistry of each oligonucleotide is denoted as in the Chemistry column, where 'k' indicates a cEt modified sugar; 'd' indicates a 2'-deoxyribose; and 'e' indicates a 2'-MOE modified sugar. The internucleoside linkages throughout each gapmer are either phosphodiester or phosphorothioate linkages. The internucleoside linkages of each oligonucleotide is denoted in the Backbone Chemistry column, where 'o' indicates a phosphodiester linkage and 's' indicates a phosphorothioate linkage. All cytosine residues throughout each oligonucleotide are 5-methylcytosines. "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Table below is targeted to either the human SOD-1 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_000454.4) or the human SOD-1 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_011512.10 truncated from nucleotides 18693000 to 18704000).
Table 50
| ISIS NO | SEQ ID NO: 1 Start Site | SEQ ID NO: 1 Stop Site | Sequence | Motif | Sugar Modifications | Backbone Chemistry | SEQ ID NO: 2 Start Site | SEQ ID NO: 2 Stop Site | SEQ ID NO |
| 383872 | 167 | 186 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 973 | 992 | 21 | |
| 611457 | 165 | 184 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 971 | 990 | 54 | |
| 611464 | 164 | 183 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 970 | 989 | 67 | |
| 611467 | 656 | 675 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 9806 | 9825 | 272 | |
| 611468 | 583 | 602 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 9733 | 9752 | 227 | |
| 611472 | 230 | 249 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 4984 | 5003 | 145 | |
| 611473 | 231 | 250 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 4985 | 5004 | 146 | |
| 611478 | 644 | 663 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 9794 | 9813 | 260 | |
| 611479 | 645 | 664 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 9795 | 9814 | 261 | |
| 611481 | 655 | 674 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 9805 | 9824 | 271 | |
| 611484 | 660 | 679 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 9810 | 9829 | 276 | |
| 611485 | 661 | 680 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 9811 | 9830 | 277 | |
| 611488 | 124 | 143 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 930 | 949 | 593 | |
| 611490 | 402 | 421 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 8457 | 8476 | 666 | |
| 611494 | 671 | 690 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 9821 | 9840 | 728 | |
| 611495 | 673 | 692 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 9823 | 9842 | 729 | |
| 611498 | 569 | 588 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 9719 | 9738 | 816 | |
| 611499 | 664 | 683 | 5-10-5 MOE | eeeeeddddddddddeeeee | sooosssssssssssooos | 9814 | 9833 | 822 | |
| 612912 | 621 | 637 | Deoxy, MOE, and cEt | eeekkdddddddkkeee | soosssssssssooss | 9771 | 9787 | 1146 | |
| 612915 | 656 | 672 | Deoxy, MOE, and cEt | eeekkdddddddkkeee | soo sssssssssooss | 9806 | 9822 | 1164 | |
| 612917 | 684 | 700 | Deoxy, MOE, and cEt | eeekkdddddddkkeee | soosssssssssooss | 9834 | 9850 | 1173 | |
| 612919 | 621 | 637 | Deoxy, MOE, and cEt | eekkddddddddkkeee | soosssssssssooss | 9771 | 9787 | 1146 | |
| 612923 | 656 | 672 | Deoxy, MOE, and cEt | eekkddddddddkkeee | soo sssssssssooss | 9806 | 9822 | 1164 | |
| 612924 | 674 | 690 | Deoxy, MOE, and cEt | eekkddddddddkkeee | soo sssssssssooss | 9824 | 9840 | 1346 | |
| 612934 | 170 | 186 | Deoxy, MOE, and cEt | eekkdddddddddkkee | sooosssssssssoss | 976 | 992 | 969 | |
| 612935 | 585 | 601 | Deoxy, MOE, and cEt | eekkdddddddddkkee | sooosssssssssoss | 9735 | 9751 | 1114 | |
| 612940 | 659 | 675 | Deoxy, MOE, and cEt | eekkdddddddddkkee | sooosssssssssoss | 9809 | 9825 | 1167 | |
| 612942 | 668 | 684 | Deoxy, MOE, and cEt | eekkdddddddddkkee | sooosssssssssoss | 9818 | 9834 | 1344 | |
| 612943 | 674 | 690 | Deoxy, MOE, and cEt | eekkdddddddddkkee | sooosssssssssoss | 9824 | 9840 | 1346 | |
| 666854 | 665 | 681 | 5-9-5 MOE | eeeeedddddddddeeeee | sooossssssssssooss | 9815 | 9831 | 1428 | |
| 666855 | 666 | 682 | 5-9-5 MOE | eeeeedddddddddeeeee | sooossssssssssooss | 9816 | 9832 | 1461 | |
| 666857 | 679 | 695 | Deoxy, MOE, and cEt | eeekddddddddkeeee | soosssssssssooss | 9829 | 9845 | 1351 | |
| 666858 | 679 | 695 | Deoxy, MOE, and cEt | eekkddddddddeeeee | soosssssssssooss | 9829 | 9845 | 1351 | |
| 666864 | 679 | 695 | Deoxy, MOE, and cEt | kekeddddddddeeeee | soosssssssssooss | 9829 | 9845 | 1351 | |
| 666865 | 679 | 695 | Deoxy, MOE, and cEt | eeeeddddddddekeke | soosssssssssooss | 9829 | 9845 | 1351 | |
| 666866 | 684 | 700 | Deoxy, MOE, and cEt | eeekddddddddkeeee | soosssssssssooss | 9834 | 9850 | 1173 | |
| 666908 | 686 | 702 | Deoxy, MOE, and cEt | eeeekdddddddkeeee | sooossssssssooss | 9836 | 9852 | 1175 | |
| 666923 | 666 | 682 | Deoxy, MOE, and cEt | eeekddddddddkeeee | sooossssssssooss | 9816 | 9832 | 1342 | |
The modified oligonucleotides were tested in a series of experiments that had similar conditions. The results for each experiment are presented in separate tables shown below. Rats were injected intrathecally with 30µL of a 16.67mg/ml solution of modified oligonucleotide diluted in PBS (500 µg final dose). A control group of rats was injected intrathecally with PBS. Inhibition levels of SOD-1 in the lumbar spinal cord, thoracic spinal cord and cervical spinal cord were assessed. The data is presented below and indicate that several modified oligonucleotides inhibited human SOD-1 levels in this model.
Table 51
Table 52
Table 53
Table 54
Table 55
Table 56
Table 57
Table 58
Table 59
Table 60
Table 61
| ISIS No | Chemistry | Lumbar | Thoracic | Cervical | SEQ ID NO |
| 333611 | 5-10-5 MOE with phosphorothioate backbone chemistry | 51 | 51 | 47 | 21 |
| 383872 | 5-10-5 MOE with mixed backbone chemistry | 29 | 36 | 26 | 21 |
| 611460 | 5-10-5 MOE with mixed backbone chemistry | 55 | 53 | 25 | 1428 |
| 611464 | 5-10-5 MOE with mixed backbone chemistry | 52 | 54 | 26 | 67 |
| 611468 | 5-10-5 MOE with mixed backbone chemistry | 46 | 44 | 19 | 227 |
| 611481 | 5-10-5 MOE with mixed backbone chemistry | 39 | 44 | 33 | 271 |
| ISIS No | Chemistry | Lumbar | Thoracic | Cervical | SEQ ID NO |
| 611473 | 5-10-5 MOE with mixed backbone chemistry | 47 | 42 | 5 | 146 |
| 611474 | 5-10-5 MOE with mixed backbone chemistry | 75 | 65 | 65 | 149 |
| 611479 | 5-10-5 MOE with mixed backbone chemistry | 24 | 13 | 20 | 261 |
| 611484 | 5-10-5 MOE with mixed backbone chemistry | 51 | 31 | 41 | 276 |
| 611485 | 5-10-5 MOE with mixed backbone chemistry | 52 | 40 | 35 | 277 |
| 611492 | 5-10-5 MOE with mixed backbone chemistry | 57 | 44 | 43 | 725 |
| ISIS No | Chemistry | Lumbar | Thoracic | Cervical | SEQ ID NO |
| 611472 | 5-10-5 MOE with mixed backbone chemistry | 0 | 19 | 15 | 145 |
| 611478 | 5-10-5 MOE with mixed backbone chemistry | 16 | 33 | 24 | 260 |
| 611490 | 5-10-5 MOE with mixed backbone chemistry | 53 | 55 | 44 | 666 |
| 611494 | 5-10-5 MOE with mixed backbone chemistry | 34 | 39 | 38 | 728 |
| 611495 | 5-10-5 MOE with mixed backbone chemistry | 33 | 19 | 38 | 729 |
| 611498 | 5-10-5 MOE with mixed backbone chemistry | 30 | 43 | 27 | 816 |
| 611499 | 5-10-5 MOE with mixed backbone chemistry | 45 | 56 | 40 | 822 |
| 611500 | 5-10-5 MOE with mixed backbone chemistry | 56 | 58 | 52 | 823 |
| ISIS No | Chemistry | Lumbar | Thoracic | Cervical | SEQ ID NO |
| 611457 | 5-10-5 MOE with mixed backbone chemistry | 56 | 46 | 43 | 54 |
| 611467 | 5-10-5 MOE with mixed backbone chemistry | 21 | 28 | 22 | 272 |
| 611488 | 5-10-5 MOE with mixed backbone chemistry | 14 | 23 | 4 | 593 |
| 612917 | Deoxy, MOE, and cEt with mixed backbone chemistry | 47 | 55 | 37 | 1173 |
| 612923 | Deoxy, MOE, and cEt with mixed backbone chemistry | 53 | 63 | 45 | 1164 |
| 612925 | Deoxy, MOE, and cEt with mixed backbone chemistry | 67 | 69 | 63 | 1348 |
| 612928 | Deoxy, MOE, and cEt with mixed backbone chemistry | 84 | 85 | 81 | 1351 |
| ISIS No | Chemistry | Lumbar | Thoracic | Cervical | SEQ ID NO |
| 612912 | Deoxy, MOE, and cEt with mixed backbone chemistry | 59 | 60 | 48 | 1146 |
| 612919 | Deoxy, MOE, and cEt with mixed backbone chemistry | 60 | 60 | 58 | 1146 |
| 612916 | Deoxy, MOE, and cEt with mixed backbone chemistry | 72 | 69 | 69 | 1170 |
| 612931 | Deoxy, MOE, and cEt with mixed backbone chemistry | 81 | 79 | 72 | 1173 |
| 612932 | Deoxy, MOE, and cEt with mixed backbone chemistry | 21 | 26 | 24 | 1175 |
| ISIS No | Chemistry | Lumbar | Thoracic | Cervical | SEQ ID NO |
| 612915 | Deoxy, MOE, and cEt with mixed backbone chemistry | 54 | 48 | 52 | 1164 |
| 612918 | Deoxy, MOE, and cEt with mixed backbone chemistry | 73 | 69 | 64 | 1175 |
| 612927 | Deoxy, MOE, and cEt with mixed backbone chemistry | 82 | 75 | 62 | 1350 |
| 612934 | Deoxy, MOE, and cEt with mixed backbone chemistry | 59 | 44 | 48 | 969 |
| 612935 | Deoxy, MOE, and cEt with mixed backbone chemistry | 64 | 54 | 62 | 1114 |
| 612940 | Deoxy, MOE, and cEt with mixed backbone chemistry | 11 | 26 | 17 | 1167 |
| 612941 | Deoxy, MOE, and cEt with mixed backbone chemistry | 81 | 75 | 71 | 1342 |
| 612942 | Deoxy, MOE, and cEt with mixed backbone chemistry | 40 | 42 | 41 | 1344 |
| 612943 | Deoxy, MOE, and cEt with mixed backbone chemistry | 61 | 54 | 51 | 1346 |
| 612944 | Deoxy, MOE, and cEt with mixed backbone chemistry | 59 | 52 | 51 | 1348 |
| ISIS No | Chemistry | Lumbar | Thoracic | Cervical | SEQ ID NO |
| 612924 | Deoxy, MOE, and cEt with mixed backbone chemistry | 42 | 64 | 53 | 1346 |
| 612947 | Deoxy, MOE, and cEt with mixed backbone chemistry | 68 | 75 | 74 | 1351 |
| 612948 | Deoxy, MOE, and cEt with mixed backbone chemistry | 80 | 90 | 87 | 1352 |
| 612949 | Deoxy, MOE, and cEt with mixed backbone chemistry | 73 | 82 | 85 | 1172 |
| ISIS No | Chemistry | Lumbar | Cervical | SEQ ID NO |
| 654304 | 5-8-5 MOE with mixed backbone chemistry | 28 | 6 | 1429 |
| 654305 | 5-8-5 MOE with mixed backbone chemistry | 14 | 0 | 1430 |
| 654306 | 5-8-5 MOE with mixed backbone chemistry | 36 | 0 | 1432 |
| 654307 | 5-8-5 MOE with mixed backbone chemistry | 17 | 0 | 1432 |
| ISIS No | Chemistry | Lumbar | Cervical | SEQ ID NO |
| 654334 | Deoxy, MOE, and cEt with mixed backbone chemistry | 39 | 19 | 1454 |
| 666854 | 5-9-5 MOE with mixed backbone chemistry | 52 | 39 | 1428 |
| 666855 | 5-9-5 MOE with mixed backbone chemistry | 37 | 17 | 1461 |
| 666857 | Deoxy, MOE, and cEt with mixed backbone chemistry | 59 | 39 | 1351 |
| 666858 | Deoxy, MOE, and cEt with mixed backbone chemistry | 38 | 22 | 1351 |
| 666859 | Deoxy, MOE, and cEt with mixed backbone chemistry | 79 | 64 | 1351 |
| 666864 | Deoxy, MOE, and cEt with mixed backbone chemistry | 50 | 40 | 1351 |
| 666865 | Deoxy, MOE, and cEt with mixed backbone chemistry | 73 | 44 | 1351 |
| 666866 | Deoxy, MOE, and cEt with mixed backbone chemistry | 67 | 56 | 1173 |
| 666908 | Deoxy, MOE, and cEt with mixed backbone chemistry | 38 | 13 | 1175 |
| 666923 | Deoxy, MOE, and cEt with mixed backbone chemistry | 45 | 26 | 1342 |
| ISIS No | Chemistry | Lumbar | Cervical | SEQ ID NO |
| 654323 | Deoxy, MOE, and cEt with mixed backbone chemistry | 53 | 35 | 1433 |
| 666846 | 5-10-5 MOE with mixed backbone chemistry | 64 | 50 | 725 |
| 666849 | 5-10-5 MOE with mixed backbone chemistry | 63 | 55 | 725 |
| 666853 | 5-10-5 MOE with mixed backbone chemistry | 81 | 74 | 725 |
| 666861 | Deoxy, MOE, and cEt with mixed backbone chemistry | 55 | 47 | 1351 |
| 666867 | Deoxy, MOE, and cEt with mixed backbone chemistry | 59 | 48 | 1173 |
| 666869 | Deoxy, MOE, and cEt with mixed backbone chemistry | 82 | 81 | 1173 |
| 666870 | Deoxy, MOE, and cEt with mixed backbone chemistry | 76 | 68 | 1173 |
| 666919 | Deoxy, MOE, and cEt with mixed backbone chemistry | 76 | 68 | 1342 |
| 666921 | Deoxy, MOE, and cEt with mixed backbone chemistry | 71 | 65 | 1342 |
| 666922 | Deoxy, MOE, and cEt with mixed backbone chemistry | 67 | 62 | 1342 |
| ISIS No | Chemistry | Lumbar | SEQ ID NO |
| 684059 | Deoxy, MOE, and cEt with mixed backbone chemistry | 54 | 1348 |
| 684064 | Deoxy, MOE, and cEt with mixed backbone chemistry | 51 | 1348 |
| 684068 | 4-8-5 MOE with mixed backbone chemistry | 18 | 1348 |
| 684087 | 5-8-5 MOE with mixed backbone chemistry | 37 | 613 |
| 684088 | 5-8-5 MOE with mixed backbone chemistry | 31 | 1419 |
| 684095 | 5-10-5 MOE with mixed backbone chemistry | 34 | 21 |
| 684097 | 5-8-7 MOE with mixed backbone chemistry | 22 | 21 |
| 684101 | 6-8-6 MOE with mixed backbone chemistry | 22 | 47 |
| 684104 | 6-9-5 MOE with mixed backbone chemistry | 11 | 47 |
Gapmers from the studies described above, including benchmark compound ISIS 333611, exhibiting significant in vitro inhibition of SOD-1 mRNA were selected and tested at various doses in LLC-MK2 cells. The cross-reactivity of the human modified oligonucleotides tested in this study with the rhesus monkey genomic sequence (the complement of GENBANK Accession No. NW_001114168.1 truncated from nucleotides 2258000 to 2271000, designated herein as SEQ ID NO: 3) is shown in the Table below.
Table 62
| ISIS No | Start Site of SEQ ID NO: 3 | Mismatches |
| 333611 | 1572 | 2 |
| 436839 | 1564 | 0 |
| 436854 | 9049 | 0 |
| 436867 | 10347 | 0 |
| 666853 | 10375 | 1 |
| 666859 | 10389 | 1 |
| 666919 | 10376 | 1 |
| 666921 | 10376 | 1 |
Cells were plated at a density of 20,000 cells per well and transfected using electroporation with 0.078 µM, 0.156 µM, 0.313 µM, 0.625 µM, 1.25 µM, 2.50 µM, 5.00 µM, and 10.000 µM concentrations of modified oligonucleotide, as specified in the Tables below. After a treatment period of approximately 16 hours, RNA was isolated from the cells and SOD-1 mRNA levels were measured by quantitative real-time PCR Primer probe set RTS3121 (forward sequence TGGAGATAATACACAAGGCTGTACCA, designated herein as SEQ ID NO: 17; reverse sequence CAACATGCCTCTCTTCATCCTTT, designated herein as SEQ ID NO: 18; probe sequence ATCCTCTATCCAGACAACACGGTGGGC, designated herein as SEQ ID NO: 19) was used to measure mRNA levels. SOD-1 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of SOD-1, relative to untreated control cells. The half maximal inhibitory concentration (IC50) of each oligonucleotide is also presented. As presented in the Table, several of the newly designed oligonucleotides were more potent than the benchmark, ISIS 336611. Table 63
| ISIS No | 0.078 µM | 0.156 µM | 0.313 µM | 0.625 µM | 1.25 µM | 2.50 µM | 5.00 µM | 10.00 µM | |
| 333611 | 3 | 2 | 0 | 0 | 17 | 15 | 19 | 40 | >10 |
| 436839 | 0 | 0 | 5 | 0 | 20 | 22 | 37 | 61 | 7.1 |
| 436854 | 34 | 34 | 40 | 39 | 52 | 65 | 69 | 84 | 1.2 |
| 436867 | 3 | 0 | 11 | 18 | 34 | 49 | 70 | 87 | 2.2 |
| 666853 | 7 | 34 | 20 | 39 | 60 | 80 | 79 | 92 | 1.0 |
| 666859 | 0 | 9 | 20 | 18 | 15 | 25 | 30 | 44 | >10 |
| 666919 | 11 | 15 | 16 | 36 | 51 | 65 | 73 | 84 | 1.4 |
| 666921 | 0 | 13 | 28 | 37 | 50 | 52 | 62 | 74 | 1.8 |
Gapmers from the studies described above, including benchmark compound ISIS 333611, which was previously disclosed in WO 2005/040180 , were tested for tolerability in Sprague-Dawley rats.
The modified oligonucleotides were tested in a series of experiments that had similar conditions. Rats were injected intrathecally with3 mg of a single dose of ISIS oligonucleotide. A control group of rats was injected intrathecally with PBS. Acute tolerability was assessed 3 hours post-dose using a functional observational battery (FOB). This score is used to evaluate the acute tolerability of a compound with lower scores denoting better tolerated compounds. Control animals usually have a score of '0' or '1'. At 3 hours post injection, the rats are observed by placing each rat on the cage top and evaluating certain functions, assigning a number of '0' or '1' depending on whether the rat exhibits normal function in the region of interest (0) or does not (1) for each function, and then adding the total scores. Seven regions are assessed, including tail, hind paws, hind legs, hind end, front posture, fore paws, and head. The results of the scoring are presented in the Table below. As presented in the Table, several newly designed oligonucleotides demonstrated more acute tolerability compared to the benchmark, ISIS 333611.
Table 64
| ISIS No | Target Start Site on SEQ ID NO: 1 | Chemistry | FOB score |
| 333611 | 167 | 5-10-5 MOE with phosphorothioate backbone | 4 |
| 684073 | 167 | Deoxy, MOE, and cEt with mixed backbone | 3 |
| 684081 | 167 | Deoxy, MOE, and cEt with mixed backbone | 1 |
| 684088 | 167 | 5-8-5 MOE with mixed backbone | 0 |
| 684093 | 167 | 5-9-5 MOE with mixed backbone | 0 |
| 684095 | 167 | 5-10-5 MOE with mixed backbone | 0 |
| 684096 | 167 | 6-8-6 MOE with mixed backbone | 0 |
| 684097 | 167 | 5-8-7 MOE with mixed backbone | 0 |
| 684098 | 167 | 7-8-5 MOE with mixed backbone | 0 |
| 684099 | 167 | 6-9-5 MOE with mixed backbone | 0 |
| 684074 | 168 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 684082 | 168 | Deoxy, MOE, and cEt with mixed backbone | 1 |
| 684089 | 168 | 5-8-5 MOE with mixed backbone | 0 |
| 684094 | 168 | 5-9-5 MOE with mixed backbone | 1 |
| 684075 | 169 | Deoxy, MOE, and cEt with mixed backbone | 3 |
| 684083 | 169 | Deoxy, MOE, and cEt with mixed backbone | 3 |
| 684090 | 169 | 5-8-5 MOE with mixed backbone | 2 |
| 684076 | 170 | Deoxy, MOE, and cEt with mixed backbone | 2 |
| 684084 | 170 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 611474 | 234 | 5-10-5 MOE with mixed backbone | 4 |
| 654301 | 234 | 5-8-5 MOE with mixed backbone | 3 |
| 654302 | 235 | 5-8-5 MOE with mixed backbone | 1 |
| 654303 | 236 | 5-8-5 MOE with mixed backbone | 0 |
| 684069 | 588 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 684077 | 588 | Deoxy, MOE, and cEt with mixed backbone | 1 |
| 684085 | 588 | 5-8-5 MOE with mixed backbone | 0 |
| 684091 | 588 | 5-9-5 MOE with mixed backbone | 0 |
| 684100 | 588 | 5-10-5 MOE with mixed backbone | 0 |
| 684101 | 588 | 6-8-6 MOE with mixed backbone | 0 |
| 684102 | 588 | 5-8-7 MOE with mixed backbone | 0 |
| 684103 | 588 | 7-8-5 MOE with mixed backbone | 0 |
| 684104 | 588 | 6-9-5 MOE with mixed backbone | 0 |
| 684070 | 589 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 684078 | 589 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 684086 | 589 | 5-8-5 MOE with mixed backbone | 0 |
| 684092 | 589 | 5-9-5 MOE with mixed backbone | 0 |
| 684071 | 590 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 684079 | 590 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 684087 | 590 | 5-8-5 MOE with mixed backbone | 0 |
| 684072 | 591 | Deoxy, MOE, and cEt with mixed backbone | 1 |
| 684080 | 591 | Deoxy, MOE, and cEt with mixed backbone | 1 |
| 654304 | 663 | 5-8-5 MOE with mixed backbone | 3 |
| 612916 | 664 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 654305 | 664 | 5-8-5 MOE with mixed backbone | 2 |
| 611492 | 665 | 5-10-5 MOE with mixed backbone | 0 |
| 654306 | 665 | 5-8-5 MOE with mixed backbone | 3 |
| 654323 | 665 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 654341 | 665 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 666846 | 665 | 5-10-5 MOE with mixed backbone | 0 |
| 666849 | 665 | 5-10-5 MOE with mixed backbone | 0 |
| 666851 | 665 | 5-10-5 MOE with mixed backbone | 1 |
| 666853 | 665 | 5-10-5 MOE with mixed backbone | 0 |
| 666854 | 665 | 5-9-5 MOE with mixed backbone | 1 |
| 611500 | 666 | 5-10-5 MOE with mixed backbone | 0 |
| 612941 | 666 | Deoxy, MOE, and cEt with mixed backbone | 3 |
| 654307 | 666 | 5-8-5 MOE with mixed backbone | 2 |
| 654342 | 666 | Deoxy, MOE, and cEt with mixed backbone | 2 |
| 666845 | 666 | 5-10-5 MOE with mixed backbone | 0 |
| 666848 | 666 | 5-10-5 MOE with mixed backbone | 1 |
| 666850 | 666 | 5-10-5 MOE with mixed backbone | 0 |
| 666852 | 666 | 5-10-5 MOE with mixed backbone | 1 |
| 666855 | 666 | 5-9-5 MOE with mixed backbone | 1 |
| 666917 | 666 | Deoxy, MOE, and cEt with mixed backbone | 3 |
| 666918 | 666 | Deoxy, MOE, and cEt with mixed backbone | 3 |
| 666919 | 666 | Deoxy, MOE, and cEt with mixed backbone | 2 |
| 666920 | 666 | Deoxy, MOE, and cEt with mixed backbone | 1 |
| 666921 | 666 | Deoxy, MOE, and cEt with mixed backbone | 2 |
| 666922 | 666 | Deoxy, MOE, and cEt with mixed backbone | 3 |
| 666923 | 666 | Deoxy, MOE, and cEt with mixed backbone | 2 |
| 666856 | 667 | 5-9-5 MOE with mixed backbone | 3 |
| 612925 | 676 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 684059 | 676 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 684060 | 676 | Deoxy, MOE, and cEt with mixed backbone | 3 |
| 684061 | 676 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 684062 | 676 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 684063 | 676 | Deoxy, MOE, and cEt with mixed backbone | 5 |
| 684064 | 676 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 684065 | 676 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 684066 | 676 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 684067 | 676 | Deoxy, MOE, and cEt with mixed backbone | 5 |
| 684068 | 676 | 4-8-5 MOE with mixed backbone | 4 |
| 612927 | 678 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 654309 | 678 | 5-8-5 MOE with mixed backbone | 4 |
| 612928 | 679 | Deoxy, MOE, and cEt with mixed backbone | 2 |
| 612947 | 679 | Deoxy, MOE, and cEt with mixed backbone | 7 |
| 654310 | 679 | 5-8-5 MOE with mixed backbone | 3 |
| 666857 | 679 | Deoxy, MOE, and cEt with mixed backbone | 1 |
| 666858 | 679 | Deoxy, MOE, and cEt with mixed backbone | 1 |
| 666859 | 679 | Deoxy, MOE, and cEt with mixed backbone | 1 |
| 666860 | 679 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 666861 | 679 | Deoxy, MOE, and cEt with mixed backbone | 5 |
| 666862 | 679 | Deoxy, MOE, and cEt with mixed backbone | 1 |
| 666863 | 679 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 666864 | 679 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 666865 | 679 | Deoxy, MOE, and cEt with mixed backbone | 5 |
| 611497 | 681 | 5-10-5 MOE with mixed backbone | 5 |
| 612948 | 681 | Deoxy, MOE, and cEt with mixed backbone | 3 |
| 666847 | 681 | 5-10-5 MOE with mixed backbone | 7 |
| 612949 | 683 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 612931 | 684 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 666866 | 684 | Deoxy, MOE, and cEt with mixed backbone | 6 |
| 666867 | 684 | Deoxy, MOE, and cEt with mixed backbone | 6 |
| 666868 | 684 | Deoxy, MOE, and cEt with mixed backbone | 6 |
| 666869 | 684 | Deoxy, MOE, and cEt with mixed backbone | 6 |
| 666870 | 684 | Deoxy, MOE, and cEt with mixed backbone | 6 |
| 666871 | 684 | Deoxy, MOE, and cEt with mixed backbone | 6 |
| 666872 | 684 | Deoxy, MOE, and cEt with mixed backbone | 6 |
| 666873 | 684 | Deoxy, MOE, and cEt with mixed backbone | 6 |
| 666874 | 684 | Deoxy, MOE, and cEt with mixed backbone | 5 |
| 612918 | 686 | Deoxy, MOE, and cEt with mixed backbone | 4 |
| 612932 | 686 | Deoxy, MOE, and cEt with mixed backbone | 2 |
| 666906 | 686 | Deoxy, MOE, and cEt with mixed backbone | 2 |
| 666907 | 686 | Deoxy, MOE, and cEt with mixed backbone | 3 |
| 666908 | 686 | Deoxy, MOE, and cEt with mixed backbone | 1 |
| 666909 | 686 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 666910 | 686 | Deoxy, MOE, and cEt with mixed backbone | 2 |
| 666911 | 686 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 666912 | 686 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 666913 | 686 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 666914 | 686 | Deoxy, MOE, and cEt with mixed backbone | 0 |
| 666915 | 686 | Deoxy, MOE, and cEt with mixed backbone | 1 |
| 666916 | 686 | Deoxy, MOE, and cEt with mixed backbone | 1 |
| 654318 | 687 | 5-8-5 MOE with mixed backbone | 1 |
| 654334 | 687 | Deoxy, MOE, and cEt with mixed backbone | 3 |
Tolerability was also assessed 8 weeks post-dose by measuring the levels of IBA1, a microglial marker, and GFAP, an astrocytic marker, in the lumbar spinal cord region. Both IBA1 and GFAP are markers of CNS inflammation (Frank, MG, Brain Behav. Immun. 2007, 21, 47-59), hence the higher the level of either marker, the less tolerable the antisense oligonucleotide is deemed to be in this rat model.
IBA1 mRNA levels were measured with primer probe set rAIF1_LTS00219 (forward sequence AGGAGAAAAACAAAGAACACCAGAA, designated herein as SEQ ID NO: 5; reverse sequence CAATTAGGGCAACTCAGAAATAGCT, designated herein as SEQ ID NO: 6; probe sequence CCAACTGGTCCCCCAGCCAAGA, designated herein as SEQ ID NO: 7). GFAP mRNA levels were measured with primer probe set mGFAP_LTS00370 (forward sequence GAAACCAGCCTGGACACCAA, designated herein as SEQ ID NO: 8; reverse sequence TCCACAGTCTTTACCACGATGTTC, designated herein as SEQ ID NO: 9; probe sequence TCCGTGTCAGAAGGCCACCTCAAGA, designated herein as SEQ ID NO: 10).
The results are presented in the Table below. As presented in the Table, several newly designed oligonucleotides were more tolerable compared to the benchmark, ISIS 333611.
Table 65
| ISIS No. | IBA1 | GFAP |
| 333611 | 341 | 314 |
| 654301 | 149 | 137 |
| 654302 | 261 | 129 |
| 654303 | 110 | 80 |
| 654304 | 143 | 130 |
| 654305 | 185 | 158 |
| 654306 | 110 | 106 |
| 654307 | 152 | 144 |
| 654309 | 195 | 169 |
| 654310 | 119 | 141 |
| 654318 | 93 | 81 |
| 654323 | 125 | 113 |
| 654334 | 114 | 75 |
| 654341 | 209 | 224 |
| 654342 | 473 | 485 |
| 666845 | 389 | 416 |
| 666846 | 173 | 171 |
| 666847 | 271 | 297 |
| 666848 | 399 | 377 |
| 666849 | 140 | 150 |
| 666850 | 246 | 252 |
| 666851 | 246 | 199 |
| 666852 | 282 | 266 |
| 666853 | 168 | 147 |
| 666854 | 135 | 123 |
| 666855 | 238 | 221 |
| 666856 | 253 | 209 |
| 666857 | 242 | 182 |
| 666858 | 169 | 134 |
| 666859 | 185 | 162 |
| 666861 | 161 | 152 |
| 666862 | 254 | 285 |
| 666863 | 216 | 185 |
| 666864 | 174 | 154 |
| 666865 | 251 | 232 |
| 666866 | 281 | 135 |
| 666867 | 132 | 112 |
| 666868 | 199 | 211 |
| 666869 | 262 | 207 |
| 666870 | 201 | 189 |
| 666871 | 192 | 214 |
| 666872 | 441 | 136 |
| 666873 | 340 | 277 |
| 666874 | 204 | 199 |
| 666917 | 292 | 244 |
| 666919 | 115 | 85 |
| 666920 | 155 | 102 |
| 666921 | 108 | 82 |
| 666922 | 123 | 82 |
| 666923 | 118 | 93 |
| 684059 | 168 | 162 |
| 684060 | 158 | 141 |
| 684061 | 335 | 263 |
| 684062 | 218 | 265 |
| 684064 | 191 | 168 |
| 684065 | 245 | 304 |
| 684066 | 313 | 376 |
| 684067 | 171 | 151 |
| 684068 | 157 | 135 |
| 684085 | 459 | 586 |
| 684086 | 187 | 227 |
| 684087 | 215 | 263 |
| 684088 | 151 | 183 |
| 684089 | 507 | 667 |
| 684090 | 130 | 170 |
| 684091 | 350 | 426 |
| 684092 | 366 | 333 |
| 684093 | 412 | 264 |
| 684094 | 294 | 373 |
| 684095 | 213 | 215 |
| 684096 | 404 | 335 |
| 684097 | 217 | 206 |
| 684098 | 378 | 438 |
| 684099 | 534 | 473 |
| 684100 | 276 | 259 |
| 684101 | 153 | 125 |
| 684102 | 237 | 242 |
| 684103 | 588 | 416 |
| 684104 | 221 | 193 |
Gapmers from the studies described above, including benchmark compound ISIS 333611, were tested in an SOD-1 transgenic rat model (Taconic, Cat# 2148-F and 2148-M). These hemizygous rats express mutant human SOD-1 in the spinal cord, many brain regions, and peripheral organs.
Rats were injected intrathecally with 10, 30, 100, 300, 1000, or 3000 µg of a gapmer listed in the table below or with only PBS. Two weeks later, the animals were sacrificed. Inhibition of SOD-1 mRNA in the lumbar spinal cord, cervical spinal cord, rostral cortex, and caudal cortex was assessed by RT-PCR using primer probe set RTS3898, described in Example 1. The data is presented below as ED50 values, and indicates that the oligonucleotides inhibited SOD1 mRNA in multiple CNS tissues more potently than Isis 333611. Indeed, ED50 values for Isis No. 333611 could not even be calculated, as indicated by an entry of "n/a," because even the highest concentration tested (3000 µg) did not inhibit SOD-1 mRNA greater than 55-65%. "n.d." indicates that there is no data available for the indicated sample.
Table 66
| Isis No. | SEQ ID NO. | ||||
| Lumbar | Cervical | Rostral | Caudal | ||
| 333611 | n/a | n/a | n.d. | n.d. | 21 |
| 666853 | 81.3 | 242.6 | 6434 | 931 | 725 |
| 666859 | 74.0 | 358.8 | 2360 | 1113 | 1351 |
| 666870 | 139.4 | 1111 | 5511 | 2105 | 1173 |
| 666919 | 104.1 | 613.5 | > 6000 | 2655 | 1342 |
Gapmers from the studies described above, including benchmark compound ISIS 333611, were tested for tolerability in Sprague-Dawley rats. Groups of 4 to 6 rats were injected intrathecally with 1 mg or 3 mg of a single dose of an ISIS oligonucleotide. A control group of rats was injected intrathecally with PBS. Acute tolerability was assessed 3 hours post-dose, as described in Example 14. The results for the 1 mg dose are the averages for each group following one experiment. The results for the 3 mg dose are the averages for each group across two replicate experiments. The results of the study, presented in the table below, indicate that several newly designed oligonucleotides were more tolerable than the benchmark, ISIS 333611.
Table 67
| Isis No. | 3 hour FOB | 8 week FOB | ||
| 1 mg | 3 mg | 1 mg | 3 mg | |
| 333611 | 3.0 | 4.9 | 0.0 | 1.2 |
| 666853 | 0.0 | 0.5 | 0.0 | 0.0 |
| 666859 | 0.0 | 2.1 | 0.0 | 0.3 |
| 666870 | 2.3 | 5.8 | 0.0 | 0.8 |
| 666919 | 1.3 | 3.5 | 0.0 | 0.1 |
In order to confirm the results obtained in transgenic rats in another species, gapmers from the studies described above were tested in an SOD-1 transgenic mouse model that expresses the same G93A human mutant SOD1 gene that the transgenic rat expresses (see Examples 12 and 15).
Mice received an intracerebral ventricular bolus (ICVB) of 10, 30, 100, 300, or 700 µg of a gapmer listed in the table below, or PBS. Two weeks later, the animals were sacrificed. Inhibition of SOD-1 mRNA in the lumbar spinal cord and cortex was assessed by RT-PCR using primer probe set RTS3898, described in Example 1. The data is presented below as ED50 values, and indicates that the oligonucleotides inhibited SOD1 mRNA more potently than Isis 333611 in both rats and mice.
Table 68
| Isis No. | ||
| 333611 | 401 | 786 |
| 666853 | 136 | 188 |
| 666859 | 106 | 206 |
| 666870 | 148 | 409 |
| 666919 | 168 | 1211 |
Gapmers from the studies described above, including benchmark compound ISIS 333611, were tested for tolerability in C57bl6 mice. Mice were injected stereotaxically into the cerebral ventricles with 700ug of a single dose of ISIS oligonucleotide. A control group of mice was injected into the cerebral ventricle with PBS. Acute tolerability was assessed at 3 hours post injection using a functional observation battery (FOB) different from that used for the rats. Each mouse was evaluated according to 7 different criteria. The 7 criteria are (1) the mouse was bright, alert, and responsive; (2) the mouse was standing or hunched without stimuli; (3) the mouse shows any movement without stimuli (4) the mouse demonstrates forward movement after its lifted; (5) the mouse demonstrates any movement after its lifted; (6) the mouse responds to a tail pinch; (7) regular breathing. For each of the 7 different criteria, each mouse was given a sub-score of 0 if it met the criteria or 1 if it did not. After all of the 7 criteria were evaluated, the sub-scores were summed for each mouse and then averaged for each group. For example, if a mouse was bright, alert, and responsive 3 hours after the 700 µg ICV dose, and met all other other criteria, it would get a summed score of 0. If another mouse was not bright, alert, and responsive 3 hours after the 700 µg ICV dose but met all other criteria, it would receive a score of 1. Saline treated mice generally receive a score of 0. A score at the top end of the range would be suggestive of acute toxicity.
Body weights were measured throughout the study and are reported below as percent change at 8 weeks relative to baseline. Long term tolerability was assessed 8 weeks post-dose by measuring the levels of IBA1 and GFAP, as described in Example 14. IBA1 and GFAP mRNA levels are reported relative to PBS treated animals. The results of the study, presented in the tables below, indicate that several newly designed oligonucleotides were more tolerable, in rats and mice, compared to the benchmark, ISIS 333611.
Table 69
Table 70
| Isis No. | 3 hour FOB | Body weight (% change) |
| 333611 | 6.5 | 3.8 |
| 666853 | 1.25 | 8.0 |
| 666859 | 1.75 | 14.0 |
| 666870 | 4.75 | 7.3 |
| 666919 | 0.0 | 5.2 |
| Isis No. | IBA1 (% PBS) | GFAP (% PBS) | ||
| Lumbar | Cortex | Lumbar | Cortex | |
| 333611 | 130.3 | 134.3 | 117.5 | 207.7 |
| 666853 | 102.8 | 109.3 | 103.3 | 103.7 |
| 666859 | 110.4 | 98.2 | 109.0 | 72.8 |
| 666870 | 158.8 | 117.8 | 106.7 | 128.6 |
| 666919 | 115.0 | 97.9 | 99.8 | 84.3 |
Isis No. 666853 was tested in cynomolgus monkey. There is one mismatch between Isis No. 666853 and cynomolgus monkey SOD-1, and there are 17 contiguous bases in Isis No. 666853 that are 100% complementary to cynomolgus monkey SOD-1.
Groups of 6-10 male and female monkeys received an intrathecal lumbar bolus of PBS or 4, 12, or 35 mg of Isis No. 666853 on days 1, 14, 28, 56, and 84 of the study. Each group received the same dose on all five dosing days. On day 91, the animals were sacrificed. Inhibition of SOD-1 mRNA in the lumbar, thoracic, and cervical spinal cord and frontal cortex, motor cortex, hippocampus, pons, and cerebellum was assessed by RT-PCR using primer probe set RTS3898. The data is presented below as the average percent inhibition for each treatment group, relative to the PBS treated group. The results indicate that Isis No. 666853 inhibited SOD-1 mRNA in multiple target tissues in cynomolgus monkey.
Treatment with 666853 was well tolerated for the duration of the 13 week study and there were no clinical observations of adverse reactions in monkeys.
Table 71
| Amount of 666853 per dose (mg) | Inhibition (%) | |||||||
| Lumbar | Thoracic | Cervical | Frontal cortex | Motor cortex | Hippocampus | Pons | Cerebellum | |
| 4 | 44.4 | 27.1 | 20.1 | 21.5 | 21.6 | 32.0 | 6.8 | 15.4 |
| 12 | 75.4 | 69.0 | 42.1 | 56.7 | 55.7 | 31.8 | 13.2 | 33.3 |
| 35 | 87.0 | 74.8 | 72.1 | 80.5 | 82.6 | 80.1 | 48.6 | 48.4 |
- <110> Isis Pharmaceuticals, Inc.
- <120> COMPOSITIONS FOR MODULATING SOD-1 EXPRESSION
- <130> BIOL0240WO
- <150> 61/973,803 <151> 2014-04-01
- <160> 1461
- <170> PatentIn version 3.5
- <210> 1 <211> 981 <212> DNA <213> Homo sapiens
- <400> 1
- <210> 2 <211> 11001 <212> DNA <213> Homo sapiens
- <400> 2
- <210> 3 <211> 13001 <212> DNA <213> Macaca mulata
- <400> 3
- <210> 4
- <400> 4 000
- <210> 5 <211> 25 <212> DNA <213> Artificial sequence
- <220> <223> Primer
- <400> 5 aggagaaaaa caaagaacac cagaa 25
- <210> 6 <211> 25 <212> DNA <213> Artificial sequence
- <220> <223> Primer
- <400> 6 caattagggc aactcagaaa tagct 25
- <210> 7 <211> 22 <212> DNA <213> Artificial sequence
- <220> <223> Probe
- <400> 7 ccaactggtc ccccagccaa ga 22
- <210> 8 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Primer
- <400> 8 gaaaccagcc tggacaccaa 20
- <210> 9 <211> 24 <212> DNA <213> Artificial sequence
- <220> <223> Primer
- <400> 9 tccacagtct ttaccacgat gttc 24
- <210> 10 <211> 25 <212> DNA <213> Artificial sequence
- <220> <223> Probe
- <400> 10 tccgtgtcag aaggccacct caaga 25
- <210> 11 <211> 22 <212> DNA <213> Artificial sequence
- <220> <223> Primer
- <400> 11 ctctcaggag accattgcat ca 22
- <210> 12 <211> 27 <212> DNA <213> Artificial sequence
- <220> <223> Primer
- <400> 12 tcctgtcttt gtactttctt catttcc 27
- <210> 13 <211> 24 <212> DNA <213> Artificial sequence
- <220> <223> Probe
- <400> 13 ccgcacactg gtggtccatg aaaa 24
- <210> 14 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Primer
- <400> 14 cgtggcctag cgagttatgg 20
- <210> 15 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Primer
- <400> 15 gaaattgatg atgccctgca 20
- <210> 16 <211> 21 <212> DNA <213> Artificial sequence
- <220> <223> Probe
- <400> 16 acgaaggccg tgtgcgtgct g 21
- <210> 17 <211> 26 <212> DNA <213> Artificial sequence
- <220> <223> Primer
- <400> 17 tggagataat acacaaggct gtacca 26
- <210> 18 <211> 23 <212> DNA <213> Artificial sequence
- <220> <223> Primer
- <400> 18 caacatgcct ctcttcatcc ttt 23
- <210> 19 <211> 27 <212> DNA <213> Artificial sequence
- <220> <223> Probe
- <400> 19 atcctctatc cagacaacac ggtgggc 27
- <210> 20
- <400> 20 000
- <210> 21 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 21 ccgtcgccct tcagcacgca 20
- <210> 22 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 22 cactggtcca ttactttcct 20
- <210> 23 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 23 acaccttcac tggtccatta 20
- <210> 24 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 24 ccacaccttc actggtccat 20
- <210> 25 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 25 caacatgcct ctcttcatcc 20
- <210> 26 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 26 ccaacatgcc tctcttcatc 20
- <210> 27 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 27 tccaacatgc ctctcttcat 20
- <210> 28 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 28 ctccaacatg cctctcttca 20
- <210> 29 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 29 tctccaacat gcctctcttc 20
- <210> 30 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 30 gtctccaaca tgcctctctt 20
- <210> 31 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 31 cacctttgcc caagtcatct 20
- <210> 32 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 32 ccacctttgc ccaagtcatc 20
- <210> 33 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 33 tccacctttg cccaagtcat 20
- <210> 34 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 34 ttccaccttt gcccaagtca 20
- <210> 35 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 35 tttccacctt tgcccaagtc 20
- <210> 36 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 36 atttccacct ttgcccaagt 20
- <210> 37 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 37 catttccacc tttgcccaag 20
- <210> 38 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 38 tcatttccac ctttgcccaa 20
- <210> 39 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 39 ttcatttcca cctttgccca 20
- <210> 40 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 40 cttcatttcc acctttgccc 20
- <210> 41 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 41 tcttcatttc cacctttgcc 20
- <210> 42 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 42 ttcttcattt ccacctttgc 20
- <210> 43 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 43 tttcttcatt tccacctttg 20
- <210> 44 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 44 ctttcttcat ttccaccttt 20
- <210> 45 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 45 actttcttca tttccacctt 20
- <210> 46 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 46 tactttcttc atttccacct 20
- <210> 47 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 47 ggcgatccca attacaccac 20
- <210> 48 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 48 ggaatgttta ttgggcgatc 20
- <210> 49 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 49 cctcagacta catccaaggg 20
- <210> 50 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 50 atacaaatct tccaagtgat 20
- <210> 51 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 51 tgagttttat aaaactatac 20
- <210> 52 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 52 tcattgaaac agacatttta 20
- <210> 53 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 53 atacaggtca ttgaaacaga 20
- <210> 54 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 54 gtcgcccttc agcacgcaca 20
- <210> 55 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 55 tttaataccc atctgtgatt 20
- <210> 56 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 56 agtttaatac ccatctgtga 20
- <210> 57 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 57 ggtttttatt cacaggcttg 20
- <210> 58 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 58 agggttttta ttcacaggct 20
- <210> 59 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 59 atacagggtt tttattcaca 20
- <210> 60 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 60 ccatacaggg tttttattca 20
- <210> 61 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 61 acgctgcagg agactacgac 20
- <210> 62 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 62 cgaggactgc aacggaaacc 20
- <210> 63 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 63 taggccacgc cgaggtcctg 20
- <210> 64 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 64 ttcagcacgc acacggcctt 20
- <210> 65 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 65 ccttcagcac gcacacggcc 20
- <210> 66 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 66 gcccttcagc acgcacacgg 20
- <210> 67 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 67 tcgcccttca gcacgcacac 20
- <210> 68 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 68 cgtcgccctt cagcacgcac 20
- <210> 69 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 69 gccctgcact gggccgtcgc 20
- <210> 70 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 70 aattgatgat gccctgcact 20
- <210> 71 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 71 agtcctttaa tgcttcccca 20
- <210> 72 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 72 aggccttcag tcagtccttt 20
- <210> 73 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 73 gctgtattat ctccaaactc 20
- <210> 74 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 74 tgcccaagtc tccaacatgc 20
- <210> 75 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 75 acacatcggc cacaccatct 20
- <210> 76 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 76 tctcctgaga gtgagatcac 20
- <210> 77 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 77 accaccagtg tgcggccaat 20
- <210> 78 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 78 tcatggacca ccagtgtgcg 20
- <210> 79 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 79 gtactttctt catttccacc 20
- <210> 80 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 80 ttgtactttc ttcatttcca 20
- <210> 81 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 81 ctttgtactt tcttcatttc 20
- <210> 82 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 82 gataacagat gagttaaggg 20
- <210> 83 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 83 cacaattaca cttttaagat 20
- <210> 84 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 84 aatcagtttc tcactacagg 20
- <210> 85 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 85 cataaatcag tttctcacta 20
- <210> 86 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 86 aactgagttt tataaaacta 20
- <210> 87 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 87 ccatctgtga tttaagtctg 20
- <210> 88 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 88 aagtgccata cagggttttt 20
- <210> 89 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 89 taataagtgc catacagggt 20
- <210> 90 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 90 ctcataataa gtgccataca 20
- <210> 91 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 91 gcctcataat aagtgccata 20
- <210> 92 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 92 ttttaatagc ctcataataa 20
- <210> 93 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 93 ggattctttt aatagcctca 20
- <210> 94 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 94 ctcactacag gtactttaaa 20
- <210> 95 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 95 aatcttccaa gtgatcataa 20
- <210> 96 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 96 attgaaacag acattttaac 20
- <210> 97 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 97 caaagaaatt ctgacaagtt 20
- <210> 98 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 98 acaggcttga atgacaaaga 20
- <210> 99 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 99 tcataataag tgccatacag 20
- <210> 100 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 100 caggccttca gtcagtcctt 20
- <210> 101 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 101 cacattgccc aagtctccaa 20
- <210> 102 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 102 tcggccacac catctttgtc 20
- <210> 103 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 103 catcggccac accatctttg 20
- <210> 104 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 104 tagacacatc ggccacacca 20
- <210> 105 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 105 ctcctgagag tgagatcaca 20
- <210> 106 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 106 catggaccac cagtgtgcgg 20
- <210> 107 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 107 taggccagac ctccgcgcct 20
- <210> 108 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 108 actttatagg ccagacctcc 20
- <210> 109 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 109 gacgcaaacc agcaccccgt 20
- <210> 110 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 110 ggttccgagg actgcaacgg 20
- <210> 111 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 111 tcctggttcc gaggactgca 20
- <210> 112 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 112 gaggtcctgg ttccgaggac 20
- <210> 113 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 113 gtcgccataa ctcgctaggc 20
- <210> 114 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 114 tcagcacgca cacggccttc 20
- <210> 115 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 115 cttcagcacg cacacggcct 20
- <210> 116 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 116 cccttcagca cgcacacggc 20
- <210> 117 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 117 cgcccttcag cacgcacacg 20
- <210> 118 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 118 cgcccactct ggccccaaac 20
- <210> 119 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 119 ccgcgactac tttataggcc 20
- <210> 120 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 120 ccttctgctc gaaattgatg 20
- <210> 121 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 121 tccttctgct cgaaattgat 20
- <210> 122 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 122 ttccttctgc tcgaaattga 20
- <210> 123 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 123 tttccttctg ctcgaaattg 20
- <210> 124 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 124 ctttccttct gctcgaaatt 20
- <210> 125 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 125 actttccttc tgctcgaaat 20
- <210> 126 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 126 tactttcctt ctgctcgaaa 20
- <210> 127 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 127 ttactttcct tctgctcgaa 20
- <210> 128 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 128 attactttcc ttctgctcga 20
- <210> 129 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 129 cattactttc cttctgctcg 20
- <210> 130 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 130 ccattacttt ccttctgctc 20
- <210> 131 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 131 tccattactt tccttctgct 20
- <210> 132 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 132 gtccattact ttccttctgc 20
- <210> 133 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 133 ggtccattac tttccttctg 20
- <210> 134 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 134 tggtccatta ctttccttct 20
- <210> 135 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 135 ctggtccatt actttccttc 20
- <210> 136 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 136 actggtccat tactttcctt 20
- <210> 137 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 137 tcactggtcc attactttcc 20
- <210> 138 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 138 ttcactggtc cattactttc 20
- <210> 139 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 139 cttcactggt ccattacttt 20
- <210> 140 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 140 ccttcactgg tccattactt 20
- <210> 141 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 141 accttcactg gtccattact 20
- <210> 142 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 142 caccttcact ggtccattac 20
- <210> 143 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 143 cacaccttca ctggtccatt 20
- <210> 144 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 144 cccacacctt cactggtcca 20
- <210> 145 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 145 ccccacacct tcactggtcc 20
- <210> 146 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 146 tccccacacc ttcactggtc 20
- <210> 147 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 147 ttccccacac cttcactggt 20
- <210> 148 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 148 cttccccaca ccttcactgg 20
- <210> 149 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 149 gcttccccac accttcactg 20
- <210> 150 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 150 tgcttcccca caccttcact 20
- <210> 151 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 151 atgcttcccc acaccttcac 20
- <210> 152 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 152 aatgcttccc cacaccttca 20
- <210> 153 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 153 taatgcttcc ccacaccttc 20
- <210> 154 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 154 tccatgcagg ccttcagtca 20
- <210> 155 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 155 atccatgcag gccttcagtc 20
- <210> 156 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 156 aatccatgca ggccttcagt 20
- <210> 157 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 157 gaatccatgc aggccttcag 20
- <210> 158 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 158 ggaatccatg caggccttca 20
- <210> 159 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 159 tggaatccat gcaggccttc 20
- <210> 160 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 160 atggaatcca tgcaggcctt 20
- <210> 161 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 161 catggaatcc atgcaggcct 20
- <210> 162 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 162 acatggaatc catgcaggcc 20
- <210> 163 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 163 aacatggaat ccatgcaggc 20
- <210> 164 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 164 gaacatggaa tccatgcagg 20
- <210> 165 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 165 tgaacatgga atccatgcag 20
- <210> 166 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 166 atgaacatgg aatccatgca 20
- <210> 167 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 167 gacctgcact ggtacagcct 20
- <210> 168 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 168 ggacctgcac tggtacagcc 20
- <210> 169 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 169 aggacctgca ctggtacagc 20
- <210> 170 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 170 gaggacctgc actggtacag 20
- <210> 171 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 171 tgaggacctg cactggtaca 20
- <210> 172 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 172 gtgaggacct gcactggtac 20
- <210> 173 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 173 agtgaggacc tgcactggta 20
- <210> 174 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 174 aagtgaggac ctgcactggt 20
- <210> 175 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 175 aaagtgagga cctgcactgg 20
- <210> 176 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 176 taaagtgagg acctgcactg 20
- <210> 177 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 177 ttaaagtgag gacctgcact 20
- <210> 178 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 178 attaaagtga ggacctgcac 20
- <210> 179 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 179 gattaaagtg aggacctgca 20
- <210> 180 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 180 ggattaaagt gaggacctgc 20
- <210> 181 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 181 aggattaaag tgaggacctg 20
- <210> 182 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 182 gaggattaaa gtgaggacct 20
- <210> 183 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 183 agaggattaa agtgaggacc 20
- <210> 184 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 184 tagaggatta aagtgaggac 20
- <210> 185 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 185 atagaggatt aaagtgagga 20
- <210> 186 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 186 gatagaggat taaagtgagg 20
- <210> 187 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 187 ggatagagga ttaaagtgag 20
- <210> 188 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 188 tggatagagg attaaagtga 20
- <210> 189 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 189 ctggatagag gattaaagtg 20
- <210> 190 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 190 tctggataga ggattaaagt 20
- <210> 191 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 191 atcctttggc ccaccgtgtt 20
- <210> 192 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 192 catcctttgg cccaccgtgt 20
- <210> 193 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 193 tcatcctttg gcccaccgtg 20
- <210> 194 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 194 ttcatccttt ggcccaccgt 20
- <210> 195 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 195 cttcatcctt tggcccaccg 20
- <210> 196 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 196 tcttcatcct ttggcccacc 20
- <210> 197 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 197 ctcttcatcc tttggcccac 20
- <210> 198 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 198 tctcttcatc ctttggccca 20
- <210> 199 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 199 ctctcttcat cctttggccc 20
- <210> 200 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 200 cctctcttca tcctttggcc 20
- <210> 201 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 201 gcctctcttc atcctttggc 20
- <210> 202 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 202 tgcctctctt catcctttgg 20
- <210> 203 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 203 atgcctctct tcatcctttg 20
- <210> 204 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 204 catgcctctc ttcatccttt 20
- <210> 205 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 205 acatgcctct cttcatcctt 20
- <210> 206 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 206 aacatgcctc tcttcatcct 20
- <210> 207 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 207 tgctttttca tggaccacca 20
- <210> 208 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 208 ctgctttttc atggaccacc 20
- <210> 209 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 209 tctgcttttt catggaccac 20
- <210> 210 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 210 atctgctttt tcatggacca 20
- <210> 211 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 211 catctgcttt ttcatggacc 20
- <210> 212 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 212 tcatctgctt tttcatggac 20
- <210> 213 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 213 gtcatctgct ttttcatgga 20
- <210> 214 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 214 agtcatctgc tttttcatgg 20
- <210> 215 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 215 aagtcatctg ctttttcatg 20
- <210> 216 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 216 caagtcatct gctttttcat 20
- <210> 217 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 217 ccaagtcatc tgctttttca 20
- <210> 218 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 218 cccaagtcat ctgctttttc 20
- <210> 219 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 219 gcccaagtca tctgcttttt 20
- <210> 220 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 220 tgcccaagtc atctgctttt 20
- <210> 221 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 221 ttgcccaagt catctgcttt 20
- <210> 222 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 222 tttgcccaag tcatctgctt 20
- <210> 223 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 223 ctttgcccaa gtcatctgct 20
- <210> 224 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 224 cctttgccca agtcatctgc 20
- <210> 225 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 225 acctttgccc aagtcatctg 20
- <210> 226 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 226 cccaattaca ccacaagcca 20
- <210> 227 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 227 tcccaattac accacaagcc 20
- <210> 228 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 228 atcccaatta caccacaagc 20
- <210> 229 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 229 gatcccaatt acaccacaag 20
- <210> 230 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 230 cgatcccaat tacaccacaa 20
- <210> 231 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 231 gcgatcccaa ttacaccaca 20
- <210> 232 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 232 gggcgatccc aattacacca 20
- <210> 233 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 233 tgggcgatcc caattacacc 20
- <210> 234 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 234 ttgggcgatc ccaattacac 20
- <210> 235 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 235 attgggcgat cccaattaca 20
- <210> 236 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 236 tattgggcga tcccaattac 20
- <210> 237 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 237 ttattgggcg atcccaatta 20
- <210> 238 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 238 tttattgggc gatcccaatt 20
- <210> 239 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 239 gtttattggg cgatcccaat 20
- <210> 240 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 240 tgtttattgg gcgatcccaa 20
- <210> 241 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 241 atgtttattg ggcgatccca 20
- <210> 242 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 242 aatgtttatt gggcgatccc 20
- <210> 243 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 243 gaatgtttat tgggcgatcc 20
- <210> 244 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 244 tccaagggaa tgtttattgg 20
- <210> 245 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 245 atccaaggga atgtttattg 20
- <210> 246 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 246 catccaaggg aatgtttatt 20
- <210> 247 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 247 acatccaagg gaatgtttat 20
- <210> 248 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 248 tacatccaag ggaatgttta 20
- <210> 249 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 249 ctacatccaa gggaatgttt 20
- <210> 250 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 250 actacatcca agggaatgtt 20
- <210> 251 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 251 gactacatcc aagggaatgt 20
- <210> 252 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 252 agactacatc caagggaatg 20
- <210> 253 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 253 cagactacat ccaagggaat 20
- <210> 254 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 254 tcagactaca tccaagggaa 20
- <210> 255 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 255 ctcagactac atccaaggga 20
- <210> 256 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 256 gcctcagact acatccaagg 20
- <210> 257 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 257 ggcctcagac tacatccaag 20
- <210> 258 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 258 gggcctcaga ctacatccaa 20
- <210> 259 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 259 caggataaca gatgagttaa 20
- <210> 260 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 260 gcaggataac agatgagtta 20
- <210> 261 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 261 agcaggataa cagatgagtt 20
- <210> 262 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 262 tagcaggata acagatgagt 20
- <210> 263 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 263 ctagcaggat aacagatgag 20
- <210> 264 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 264 gctagcagga taacagatga 20
- <210> 265 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 265 agctagcagg ataacagatg 20
- <210> 266 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 266 cagctagcag gataacagat 20
- <210> 267 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 267 acagctagca ggataacaga 20
- <210> 268 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 268 tacagctagc aggataacag 20
- <210> 269 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 269 ctacagctag caggataaca 20
- <210> 270 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 270 tctacagcta gcaggataac 20
- <210> 271 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 271 ttctacagct agcaggataa 20
- <210> 272 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 272 tttctacagc tagcaggata 20
- <210> 273 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 273 atttctacag ctagcaggat 20
- <210> 274 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 274 catttctaca gctagcagga 20
- <210> 275 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 275 acatttctac agctagcagg 20
- <210> 276 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 276 tacatttcta cagctagcag 20
- <210> 277 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 277 atacatttct acagctagca 20
- <210> 278 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 278 gatacatttc tacagctagc 20
- <210> 279 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 279 acagtgttta atgtttatca 20
- <210> 280 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 280 tacagtgttt aatgtttatc 20
- <210> 281 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 281 ttacagtgtt taatgtttat 20
- <210> 282 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 282 attacagtgt ttaatgttta 20
- <210> 283 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 283 gattacagtg tttaatgttt 20
- <210> 284 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 284 agattacagt gtttaatgtt 20
- <210> 285 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 285 aagattacag tgtttaatgt 20
- <210> 286 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 286 taagattaca gtgtttaatg 20
- <210> 287 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 287 ttaagattac agtgtttaat 20
- <210> 288 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 288 caaatcttcc aagtgatcat 20
- <210> 289 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 289 acaaatcttc caagtgatca 20
- <210> 290 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 290 tacaaatctt ccaagtgatc 20
- <210> 291 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 291 tatacaaatc ttccaagtga 20
- <210> 292 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 292 ctatacaaat cttccaagtg 20
- <210> 293 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 293 actatacaaa tcttccaagt 20
- <210> 294 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 294 aactatacaa atcttccaag 20
- <210> 295 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 295 aaactataca aatcttccaa 20
- <210> 296 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 296 aaaactatac aaatcttcca 20
- <210> 297 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 297 taaaactata caaatcttcc 20
- <210> 298 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 298 ataaaactat acaaatcttc 20
- <210> 299 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 299 tataaaacta tacaaatctt 20
- <210> 300 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 300 ttataaaact atacaaatct 20
- <210> 301 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 301 tttataaaac tatacaaatc 20
- <210> 302 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 302 ttttataaaa ctatacaaat 20
- <210> 303 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 303 gttttataaa actatacaaa 20
- <210> 304 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 304 agttttataa aactatacaa 20
- <210> 305 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 305 gagttttata aaactataca 20
- <210> 306 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 306 cattgaaaca gacattttaa 20
- <210> 307 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 307 gtcattgaaa cagacatttt 20
- <210> 308 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 308 ggtcattgaa acagacattt 20
- <210> 309 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 309 aggtcattga aacagacatt 20
- <210> 310 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 310 caggtcattg aaacagacat 20
- <210> 311 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 311 acaggtcatt gaaacagaca 20
- <210> 312 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 312 tacaggtcat tgaaacagac 20
- <210> 313 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 313 aatacaggtc attgaaacag 20
- <210> 314 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 314 aaatacaggt cattgaaaca 20
- <210> 315 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 315 aaaatacagg tcattgaaac 20
- <210> 316 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 316 caaaatacag gtcattgaaa 20
- <210> 317 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 317 ccttgccttc tgctcgaaat 20
- <210> 318 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 318 aataaagttg acctcttttt 20
- <210> 319 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 319 ctctgatata aaaatcttgt 20
- <210> 320 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 320 gccccgcggc ggcctcggtc 20
- <210> 321 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 321 gctatcgcca ttattacaag 20
- <210> 322 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 322 ctcaaatgtg aaagttgtcc 20
- <210> 323 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 323 gttctatatt caataaatgc 20
- <210> 324 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 324 aattaaagtt cccaaataca 20
- <210> 325 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 325 gatcattaca aaagttaaga 20
- <210> 326 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 326 ccttctctgc ccttgcagcc 20
- <210> 327 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 327 acccaaataa ctatgttgta 20
- <210> 328 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 328 ccaggtttta aacttaacaa 20
- <210> 329 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 329 atctcaggac taaaataaac 20
- <210> 330 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 330 aaataactat gttgtagacc 20
- <210> 331 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 331 aagaaccttt tccagaaaat 20
- <210> 332 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 332 ggaacagaaa caagtctatg 20
- <210> 333 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 333 agaaagctat cgccattatt 20
- <210> 334 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 334 ttcccaaata cattctaaaa 20
- <210> 335 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 335 aactgctcta ggcctgtgtc 20
- <210> 336 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 336 aaatggatca aatctgatca 20
- <210> 337 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 337 gtaggtgcac atcaaaatca 20
- <210> 338 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 338 tctgatataa aaatcttgtc 20
- <210> 339 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 339 accatatgaa ctccagaaag 20
- <210> 340 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 340 aacatcaagg tagttcatga 20
- <210> 341 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 341 gcaattacag aaatggatca 20
- <210> 342 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 342 ttttaagcat attccaaagt 20
- <210> 343 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 343 tcaaccccca gctcaaacac 20
- <210> 344 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 344 agaaaaataa cattaatcct 20
- <210> 345 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 345 aagattttaa acacggaata 20
- <210> 346 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 346 agcagtcaca ttgcccaagt 20
- <210> 347 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 347 cagtgtttaa tgtttatcag 20
- <210> 348 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 348 gcaaaataca ggtcattgaa 20
- <210> 349 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 349 ggcaaaatac aggtcattga 20
- <210> 350 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 350 tggcaaaata caggtcattg 20
- <210> 351 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 351 ctggcaaaat acaggtcatt 20
- <210> 352 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 352 tctggcaaaa tacaggtcat 20
- <210> 353 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 353 gtctggcaaa atacaggtca 20
- <210> 354 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 354 agtctggcaa aatacaggtc 20
- <210> 355 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 355 aagtctggca aaatacaggt 20
- <210> 356 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 356 taagtctggc aaaatacagg 20
- <210> 357 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 357 ttaagtctgg caaaatacag 20
- <210> 358 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 358 gtttaatacc catctgtgat 20
- <210> 359 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 359 aagtttaata cccatctgtg 20
- <210> 360 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 360 caagtttaat acccatctgt 20
- <210> 361 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 361 acaagtttaa tacccatctg 20
- <210> 362 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 362 gacaagttta atacccatct 20
- <210> 363 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 363 tgacaagttt aatacccatc 20
- <210> 364 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 364 ctgacaagtt taatacccat 20
- <210> 365 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 365 tctgacaagt ttaataccca 20
- <210> 366 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 366 ttctgacaag tttaataccc 20
- <210> 367 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 367 attctgacaa gtttaatacc 20
- <210> 368 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 368 aattctgaca agtttaatac 20
- <210> 369 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 369 aaattctgac aagtttaata 20
- <210> 370 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 370 gaaattctga caagtttaat 20
- <210> 371 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 371 agaaattctg acaagtttaa 20
- <210> 372 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 372 aagaaattct gacaagttta 20
- <210> 373 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 373 ttattcacag gcttgaatga 20
- <210> 374 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 374 tttattcaca ggcttgaatg 20
- <210> 375 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 375 ttttattcac aggcttgaat 20
- <210> 376 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 376 tttttattca caggcttgaa 20
- <210> 377 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 377 gtttttattc acaggcttga 20
- <210> 378 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 378 gggtttttat tcacaggctt 20
- <210> 379 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 379 cagggttttt attcacaggc 20
- <210> 380 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 380 acagggtttt tattcacagg 20
- <210> 381 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 381 tacagggttt ttattcacag 20
- <210> 382 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 382 catacagggt ttttattcac 20
- <210> 383 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 383 gccatacagg gtttttattc 20
- <210> 384 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 384 tgccatacag ggtttttatt 20
- <210> 385 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 385 gtgccataca gggtttttat 20
- <210> 386 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 386 agtgccatac agggttttta 20
- <210> 387 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 387 tggaaaaact caaatgtgaa 20
- <210> 388 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 388 tttccctttc ttttccacac 20
- <210> 389 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 389 tctttccctt tcttttccac 20
- <210> 390 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 390 taccttctct gcccttgcag 20
- <210> 391 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 391 gcaagggcca aggctgctgc 20
- <210> 392 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 392 aaagctaaat tatgaattaa 20
- <210> 393 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 393 ctaatgaagg ctcagtatga 20
- <210> 394 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 394 ggagtcaaat gccaaagaac 20
- <210> 395 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 395 tgaattaaag ttcccaaata 20
- <210> 396 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 396 acttggtgca ggcagaatat 20
- <210> 397 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 397 cctctgatat aaaaatcttg 20
- <210> 398 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 398 aaagttggag agagtttctg 20
- <210> 399 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 399 tctctgccct tgcagcccaa 20
- <210> 400 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 400 ttacttggtg caggcagaat 20
- <210> 401 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 401 aatggagtca aatgccaaag 20
- <210> 402 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 402 tatgaattaa agttcccaaa 20
- <210> 403 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 403 agttctatat tcaataaatg 20
- <210> 404 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 404 tacaagtagt ataccatatg 20
- <210> 405 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 405 tagccttaga gctgtacaaa 20
- <210> 406 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 406 gtccccattt gtcaattcct 20
- <210> 407 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 407 aacctgccta ctggcagagc 20
- <210> 408 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 408 cttgttccca cactcaatgc 20
- <210> 409 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 409 acaagtcatg ataacctgca 20
- <210> 410 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 410 tgttttccaa actcagatct 20
- <210> 411 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 411 agaacctcat aatattagaa 20
- <210> 412 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 412 ggttttaaac ttaacaaaat 20
- <210> 413 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 413 ctctggtgta tttttagtaa 20
- <210> 414 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 414 tatctctgca tatctggaaa 20
- <210> 415 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 415 cagccttttt aacccaaaag 20
- <210> 416 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 416 tggaatgctc cactatccaa 20
- <210> 417 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 417 cgttcagaag tttgtctctg 20
- <210> 418 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 418 ctgctcaggg aaggtggaaa 20
- <210> 419 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 419 tcaagagaag ctaggaaaac 20
- <210> 420 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 420 tccctttctt ttccacacct 20
- <210> 421 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 421 ttgttcccac actcaatgca 20
- <210> 422 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 422 tcaccagcac agcacaacac 20
- <210> 423 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 423 cctgggatca ttacaaaagt 20
- <210> 424 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 424 agtagtatac catatgaact 20
- <210> 425 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 425 tctaatatgg tcaaatgtaa 20
- <210> 426 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 426 ggttgggctc tggtgtattt 20
- <210> 427 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 427 tgccctttac ttggtgcagg 20
- <210> 428 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 428 agagagtttc tgaacaaaga 20
- <210> 429 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 429 gaatttcagc aattacagaa 20
- <210> 430 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 430 acaagttaaa caagtcatga 20
- <210> 431 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 431 tgtgcccttt acttggtgca 20
- <210> 432 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 432 ttaggaggag gaaaaggacc 20
- <210> 433 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 433 actggcagag caattttaaa 20
- <210> 434 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 434 agtcaaatgc caaagaacct 20
- <210> 435 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 435 aagcatcaga tggattaggg 20
- <210> 436 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 436 gtccgcggga ccctcaggaa 20
- <210> 437 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 437 caattacaga aatggatcaa 20
- <210> 438 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 438 gctgtcaagt aatcactacc 20
- <210> 439 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 439 agtgcaaagt tggagagagt 20
- <210> 440 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 440 acttgcttcc aatcccaaat 20
- <210> 441 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 441 aactcaaatg tgaaagttgt 20
- <210> 442 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 442 ttttagtaag atcttcaaat 20
- <210> 443 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 443 atttcagcaa ttacagaaat 20
- <210> 444 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 444 ttaagtgtcc ccatttgtca 20
- <210> 445 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 445 ttagcaacct gcctactggc 20
- <210> 446 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 446 tattacaaga gttaagcatc 20
- <210> 447 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 447 atgttgaata tacatgtaca 20
- <210> 448 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 448 tttgtctctg accatcttag 20
- <210> 449 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 449 ttttccacca gttggtaact 20
- <210> 450 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 450 caacagcttc ccacaagtta 20
- <210> 451 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 451 caaatgtgaa agttgtccct 20
- <210> 452 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 452 gctaccttct ctgcccttgc 20
- <210> 453 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 453 tcttagcaga acagtgttct 20
- <210> 454 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 454 atacattcta aaaagaaaca 20
- <210> 455 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 455 gcacatattt acaagtagta 20
- <210> 456 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 456 gggtcaccag cacagcacaa 20
- <210> 457 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 457 gtgcaagggc caaggctgct 20
- <210> 458 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 458 acctgggttc atgcatggat 20
- <210> 459 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 459 atcactattt gaaactaaat 20
- <210> 460 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 460 atacaataaa gttgacctct 20
- <210> 461 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 461 ttttaaactt aacaaaatgt 20
- <210> 462 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 462 ctccccgcgc tcccgccacg 20
- <210> 463 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 463 gaaggctcag tatgaagaga 20
- <210> 464 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 464 agaaaacagc tgatttacct 20
- <210> 465 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 465 ccacaagtta aacaagtcat 20
- <210> 466 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 466 caaatttgca aacaagtagc 20
- <210> 467 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 467 cctaatttga actgcaagta 20
- <210> 468 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 468 aaaaaactca tctccccagc 20
- <210> 469 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 469 aggctcagta tgaagagatc 20
- <210> 470 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 470 tgttatcaag agcacagggc 20
- <210> 471 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 471 cctcaaaagg gagatggtaa 20
- <210> 472 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 472 agtatgggtc accagcacag 20
- <210> 473 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 473 tcacaatcta gtgcagttac 20
- <210> 474 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 474 caagtgagaa acccaatcct 20
- <210> 475 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 475 agaaaatctg gccattttaa 20
- <210> 476 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 476 acaggtaatg gtgctccgtg 20
- <210> 477 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 477 tgaaaggctt tcagaaaaca 20
- <210> 478 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 478 caggcaagtt acaggaagca 20
- <210> 479 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 479 cagcaagctg cttaactgct 20
- <210> 480 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 480 tgttgcaaag acattacctt 20
- <210> 481 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 481 gaaactaaat tagcaagatg 20
- <210> 482 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 482 tcaagagcac agggccaaaa 20
- <210> 483 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 483 aggaggagga aaaggacctc 20
- <210> 484 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 484 cctcagcctt tttaacccaa 20
- <210> 485 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 485 ctatgttgta gaccaccaca 20
- <210> 486 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 486 ctccgtggct acatacagaa 20
- <210> 487 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 487 tttatctgga tctttagaaa 20
- <210> 488 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 488 aaaaaaagga aagtgaaagt 20
- <210> 489 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 489 ggttcatgca tggattctca 20
- <210> 490 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 490 ctgcaaagtg tcacacaaac 20
- <210> 491 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 491 ttcagaagta ccaaagggta 20
- <210> 492 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 492 taaaagcatt ccagcatttg 20
- <210> 493 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 493 tagtatacca tatgaactcc 20
- <210> 494 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 494 tgcatatctg gaaagctgga 20
- <210> 495 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 495 cttaactgct ctaggcctgt 20
- <210> 496 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 496 aggcaccgac cgggcggcac 20
- <210> 497 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 497 tgcaaagttg gagagagttt 20
- <210> 498 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 498 tcctcaaaag ggagatggta 20
- <210> 499 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 499 agtataccat atgaactcca 20
- <210> 500 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 500 tatttgtaca tgttgaatat 20
- <210> 501 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 501 acccaaaagg tgtatgtctc 20
- <210> 502 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 502 ctttggaaaa aaaggaaagt 20
- <210> 503 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 503 gggagaaagg caggcaagtt 20
- <210> 504 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 504 ttaagcccag gaagtaaaag 20
- <210> 505 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 505 agacattacc tttaaacatt 20
- <210> 506 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 506 gtggcttaag aaatgctccg 20
- <210> 507 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 507 gtgagaaggg aacagaaaca 20
- <210> 508 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 508 aaaagcatca gatggattag 20
- <210> 509 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 509 ttccaccagt tggtaacttc 20
- <210> 510 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 510 tttttagtaa gatcttcaaa 20
- <210> 511 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 511 atctgtgtcc aaatcccagg 20
- <210> 512 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 512 taagatcttc aaataagcta 20
- <210> 513 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 513 atcaactctt tccctttctt 20
- <210> 514 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 514 tgtgtcctca aaagggagat 20
- <210> 515 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 515 tacctcctcc caacaatacc 20
- <210> 516 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 516 ttctgcttta caactatggc 20
- <210> 517 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 517 gtacatgttg aatatacatg 20
- <210> 518 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 518 tttgtggcta atcttaaggt 20
- <210> 519 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 519 tcctgcctca gcctttttaa 20
- <210> 520 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 520 cggtgtccgc gggaccctca 20
- <210> 521 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 521 gaaatggatc aaatctgatc 20
- <210> 522 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 522 ggtagttcat gagctaaatt 20
- <210> 523 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 523 aatggagtct cgactagttt 20
- <210> 524 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 524 caagtatggg tcaccagcac 20
- <210> 525 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 525 ggtgtccgcg ggaccctcag 20
- <210> 526 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 526 cgccacgcgc aggcccagcc 20
- <210> 527 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 527 tctaggcctg tgtcctcaaa 20
- <210> 528 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 528 actgtcctgg gctaatgaag 20
- <210> 529 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 529 aagcatcttg ttacctctct 20
- <210> 530 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 530 gcccaggaag taaaagcatt 20
- <210> 531 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 531 gtaagatctt caaataagct 20
- <210> 532 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 532 aaagggagat ggtaatcttg 20
- <210> 533 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 533 gccaaggctg ctgccttaca 20
- <210> 534 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 534 cagactaact gttcctgtcc 20
- <210> 535 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 535 tttgtcaatt cctttaagcc 20
- <210> 536 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 536 actacctcct cccaacaata 20
- <210> 537 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 537 tacctctctt catcctttgg 20
- <210> 538 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 538 actgctctag gcctgtgtcc 20
- <210> 539 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 539 cctcctccca acaataccca 20
- <210> 540 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 540 ggcaggcaag ttacaggaag 20
- <210> 541 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 541 tcgcccactc tggccccaaa 20
- <210> 542 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 542 cctcgcccac tctggcccca 20
- <210> 543 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 543 cgcctcgccc actctggccc 20
- <210> 544 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 544 cgcgcctcgc ccactctggc 20
- <210> 545 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 545 tccgcgcctc gcccactctg 20
- <210> 546 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 546 cctccgcgcc tcgcccactc 20
- <210> 547 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 547 gacctccgcg cctcgcccac 20
- <210> 548 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 548 cagacctccg cgcctcgccc 20
- <210> 549 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 549 gccagacctc cgcgcctcgc 20
- <210> 550 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 550 aggccagacc tccgcgcctc 20
- <210> 551 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 551 ataggccaga cctccgcgcc 20
- <210> 552 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 552 ttataggcca gacctccgcg 20
- <210> 553 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 553 ctttataggc cagacctccg 20
- <210> 554 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 554 tactttatag gccagacctc 20
- <210> 555 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 555 actactttat aggccagacc 20
- <210> 556 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 556 cgactacttt ataggccaga 20
- <210> 557 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 557 cgcgactact ttataggcca 20
- <210> 558 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 558 tccgcgacta ctttataggc 20
- <210> 559 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 559 tctccgcgac tactttatag 20
- <210> 560 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 560 cgtctccgcg actactttat 20
- <210> 561 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 561 cccgtctccg cgactacttt 20
- <210> 562 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 562 accccgtctc cgcgactact 20
- <210> 563 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 563 gcaccccgtc tccgcgacta 20
- <210> 564 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 564 cagcaccccg tctccgcgac 20
- <210> 565 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 565 accagcaccc cgtctccgcg 20
- <210> 566 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 566 aaaccagcac cccgtctccg 20
- <210> 567 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 567 gcaaaccagc accccgtctc 20
- <210> 568 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 568 acgcaaacca gcaccccgtc 20
- <210> 569 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 569 cgacgcaaac cagcaccccg 20
- <210> 570 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 570 tacgacgcaa accagcaccc 20
- <210> 571 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 571 actacgacgc aaaccagcac 20
- <210> 572 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 572 agactacgac gcaaaccagc 20
- <210> 573 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 573 ggagactacg acgcaaacca 20
- <210> 574 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 574 caggagacta cgacgcaaac 20
- <210> 575 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 575 tgcaggagac tacgacgcaa 20
- <210> 576 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 576 gctgcaggag actacgacgc 20
- <210> 577 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 577 gcaacggaaa ccccagacgc 20
- <210> 578 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 578 ctgcaacgga aaccccagac 20
- <210> 579 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 579 gactgcaacg gaaaccccag 20
- <210> 580 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 580 ggactgcaac ggaaacccca 20
- <210> 581 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 581 aggactgcaa cggaaacccc 20
- <210> 582 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 582 tccgaggact gcaacggaaa 20
- <210> 583 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 583 gttccgagga ctgcaacgga 20
- <210> 584 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 584 tggttccgag gactgcaacg 20
- <210> 585 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 585 cctggttccg aggactgcaa 20
- <210> 586 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 586 gtcctggttc cgaggactgc 20
- <210> 587 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 587 aggtcctggt tccgaggact 20
- <210> 588 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 588 cgaggtcctg gttccgagga 20
- <210> 589 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 589 gccgaggtcc tggttccgag 20
- <210> 590 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 590 acgccgaggt cctggttccg 20
- <210> 591 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 591 ccacgccgag gtcctggttc 20
- <210> 592 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 592 ggccacgccg aggtcctggt 20
- <210> 593 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 593 gctaggccac gccgaggtcc 20
- <210> 594 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 594 tcgctaggcc acgccgaggt 20
- <210> 595 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 595 actcgctagg ccacgccgag 20
- <210> 596 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 596 taactcgcta ggccacgccg 20
- <210> 597 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 597 cataactcgc taggccacgc 20
- <210> 598 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 598 gccataactc gctaggccac 20
- <210> 599 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 599 tcgccataac tcgctaggcc 20
- <210> 600 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 600 cgtcgccata actcgctagg 20
- <210> 601 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 601 cagcacgcac acggccttcg 20
- <210> 602 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 602 gccgtcgccc ttcagcacgc 20
- <210> 603 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 603 ggccgtcgcc cttcagcacg 20
- <210> 604 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 604 gggccgtcgc ccttcagcac 20
- <210> 605 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 605 ctgggccgtc gcccttcagc 20
- <210> 606 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 606 cactgggccg tcgcccttca 20
- <210> 607 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 607 tgcactgggc cgtcgccctt 20
- <210> 608 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 608 cctgcactgg gccgtcgccc 20
- <210> 609 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 609 atgccctgca ctgggccgtc 20
- <210> 610 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 610 tgatgccctg cactgggccg 20
- <210> 611 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 611 gatgatgccc tgcactgggc 20
- <210> 612 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 612 ttgatgatgc cctgcactgg 20
- <210> 613 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 613 ggcgatccca attacacc 18
- <210> 614 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 614 tcgaaattga tgatgccctg 20
- <210> 615 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 615 gctcgaaatt gatgatgccc 20
- <210> 616 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 616 ctgctcgaaa ttgatgatgc 20
- <210> 617 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 617 ttctgctcga aattgatgat 20
- <210> 618 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 618 ttaatgcttc cccacacctt 20
- <210> 619 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 619 ctttaatgct tccccacacc 20
- <210> 620 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 620 tcctttaatg cttccccaca 20
- <210> 621 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 621 tcagtccttt aatgcttccc 20
- <210> 622 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 622 agtcagtcct ttaatgcttc 20
- <210> 623 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 623 tcagtcagtc ctttaatgct 20
- <210> 624 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 624 cttcagtcag tcctttaatg 20
- <210> 625 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 625 gccttcagtc agtcctttaa 20
- <210> 626 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 626 gcaggccttc agtcagtcct 20
- <210> 627 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 627 atgcaggcct tcagtcagtc 20
- <210> 628 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 628 ccatgcaggc cttcagtcag 20
- <210> 629 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 629 catgaacatg gaatccatgc 20
- <210> 630 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 630 ctcatgaaca tggaatccat 20
- <210> 631 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 631 aactcatgaa catggaatcc 20
- <210> 632 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 632 ccaaactcat gaacatggaa 20
- <210> 633 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 633 ctccaaactc atgaacatgg 20
- <210> 634 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 634 atctccaaac tcatgaacat 20
- <210> 635 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 635 ttatctccaa actcatgaac 20
- <210> 636 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 636 tattatctcc aaactcatga 20
- <210> 637 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 637 tgtattatct ccaaactcat 20
- <210> 638 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 638 ctgctgtatt atctccaaac 20
- <210> 639 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 639 gcctgctgta ttatctccaa 20
- <210> 640 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 640 cagcctgctg tattatctcc 20
- <210> 641 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 641 tacagcctgc tgtattatct 20
- <210> 642 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 642 ggtacagcct gctgtattat 20
- <210> 643 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 643 ctggtacagc ctgctgtatt 20
- <210> 644 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 644 cactggtaca gcctgctgta 20
- <210> 645 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 645 tgcactggta cagcctgctg 20
- <210> 646 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 646 cctgcactgg tacagcctgc 20
- <210> 647 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 647 ttctggatag aggattaaag 20
- <210> 648 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 648 ttttctggat agaggattaa 20
- <210> 649 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 649 tgttttctgg atagaggatt 20
- <210> 650 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 650 cgtgttttct ggatagagga 20
- <210> 651 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 651 accgtgtttt ctggatagag 20
- <210> 652 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 652 ccaccgtgtt ttctggatag 20
- <210> 653 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 653 gcccaccgtg ttttctggat 20
- <210> 654 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 654 tggcccaccg tgttttctgg 20
- <210> 655 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 655 tttggcccac cgtgttttct 20
- <210> 656 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 656 cctttggccc accgtgtttt 20
- <210> 657 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 657 agtctccaac atgcctctct 20
- <210> 658 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 658 caagtctcca acatgcctct 20
- <210> 659 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 659 cccaagtctc caacatgcct 20
- <210> 660 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 660 attgcccaag tctccaacat 20
- <210> 661 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 661 acattgccca agtctccaac 20
- <210> 662 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 662 tcacattgcc caagtctcca 20
- <210> 663 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 663 agtcacattg cccaagtctc 20
- <210> 664 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 664 gcagtcacat tgcccaagtc 20
- <210> 665 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 665 cagcagtcac attgcccaag 20
- <210> 666 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 666 gtcagcagtc acattgccca 20
- <210> 667 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 667 ttgtcagcag tcacattgcc 20
- <210> 668 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 668 ctttgtcagc agtcacattg 20
- <210> 669 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 669 atctttgtca gcagtcacat 20
- <210> 670 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 670 ccatctttgt cagcagtcac 20
- <210> 671 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 671 caccatcttt gtcagcagtc 20
- <210> 672 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 672 cacaccatct ttgtcagcag 20
- <210> 673 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 673 gccacaccat ctttgtcagc 20
- <210> 674 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 674 cggccacacc atctttgtca 20
- <210> 675 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 675 atcggccaca ccatctttgt 20
- <210> 676 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 676 acatcggcca caccatcttt 20
- <210> 677 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 677 agacacatcg gccacaccat 20
- <210> 678 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 678 atagacacat cggccacacc 20
- <210> 679 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 679 caatagacac atcggccaca 20
- <210> 680 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 680 ttcaatagac acatcggcca 20
- <210> 681 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 681 tcttcaatag acacatcggc 20
- <210> 682 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 682 aatcttcaat agacacatcg 20
- <210> 683 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 683 agaatcttca atagacacat 20
- <210> 684 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 684 acagaatctt caatagacac 20
- <210> 685 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 685 tcacagaatc ttcaatagac 20
- <210> 686 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 686 gatcacagaa tcttcaatag 20
- <210> 687 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 687 gagatcacag aatcttcaat 20
- <210> 688 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 688 gtgagatcac agaatcttca 20
- <210> 689 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 689 gagtgagatc acagaatctt 20
- <210> 690 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 690 gagagtgaga tcacagaatc 20
- <210> 691 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 691 ctgagagtga gatcacagaa 20
- <210> 692 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 692 tcctgagagt gagatcacag 20
- <210> 693 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 693 ggtctcctga gagtgagatc 20
- <210> 694 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 694 atggtctcct gagagtgaga 20
- <210> 695 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 695 caatggtctc ctgagagtga 20
- <210> 696 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 696 tgcaatggtc tcctgagagt 20
- <210> 697 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 697 gatgcaatgg tctcctgaga 20
- <210> 698 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 698 atgatgcaat ggtctcctga 20
- <210> 699 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 699 caatgatgca atggtctcct 20
- <210> 700 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 700 gccaatgatg caatggtctc 20
- <210> 701 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 701 cggccaatga tgcaatggtc 20
- <210> 702 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 702 tgcggccaat gatgcaatgg 20
- <210> 703 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 703 tgtgcggcca atgatgcaat 20
- <210> 704 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 704 agtgtgcggc caatgatgca 20
- <210> 705 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 705 ccagtgtgcg gccaatgatg 20
- <210> 706 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 706 caccagtgtg cggccaatga 20
- <210> 707 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 707 ggaccaccag tgtgcggcca 20
- <210> 708 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 708 atggaccacc agtgtgcggc 20
- <210> 709 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 709 tttcatggac caccagtgtg 20
- <210> 710 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 710 tttttcatgg accaccagtg 20
- <210> 711 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 711 gctttttcat ggaccaccag 20
- <210> 712 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 712 tgtctttgta ctttcttcat 20
- <210> 713 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 713 cctgtctttg tactttcttc 20
- <210> 714 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 714 ttcctgtctt tgtactttct 20
- <210> 715 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 715 gtttcctgtc tttgtacttt 20
- <210> 716 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 716 aagccaaacg acttccagcg 20
- <210> 717 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 717 acaagccaaa cgacttccag 20
- <210> 718 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 718 ccacaagcca aacgacttcc 20
- <210> 719 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 719 caccacaagc caaacgactt 20
- <210> 720 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 720 tacaccacaa gccaaacgac 20
- <210> 721 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 721 attacaccac aagccaaacg 20
- <210> 722 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 722 caattacacc acaagccaaa 20
- <210> 723 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 723 aggataacag atgagttaag 20
- <210> 724 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 724 ggatacattt ctacagctag 20
- <210> 725 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 725 caggatacat ttctacagct 20
- <210> 726 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 726 atcaggatac atttctacag 20
- <210> 727 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 727 ttatcaggat acatttctac 20
- <210> 728 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 728 gtttatcagg atacatttct 20
- <210> 729 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 729 atgtttatca ggatacattt 20
- <210> 730 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 730 taatgtttat caggatacat 20
- <210> 731 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 731 tttaatgttt atcaggatac 20
- <210> 732 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 732 tgtttaatgt ttatcaggat 20
- <210> 733 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 733 agtgtttaat gtttatcagg 20
- <210> 734 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 734 tttaagatta cagtgtttaa 20
- <210> 735 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 735 cttttaagat tacagtgttt 20
- <210> 736 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 736 cacttttaag attacagtgt 20
- <210> 737 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 737 tacactttta agattacagt 20
- <210> 738 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 738 attacacttt taagattaca 20
- <210> 739 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 739 caattacact tttaagatta 20
- <210> 740 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 740 cacacaatta cacttttaag 20
- <210> 741 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 741 gtcacacaat tacactttta 20
- <210> 742 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 742 aagtcacaca attacacttt 20
- <210> 743 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 743 aaaagtcaca caattacact 20
- <210> 744 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 744 gaaaaagtca cacaattaca 20
- <210> 745 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 745 ctgaaaaagt cacacaatta 20
- <210> 746 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 746 ctctgaaaaa gtcacacaat 20
- <210> 747 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 747 aactctgaaa aagtcacaca 20
- <210> 748 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 748 gcaactctga aaaagtcaca 20
- <210> 749 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 749 aagcaactct gaaaaagtca 20
- <210> 750 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 750 ttaaagcaac tctgaaaaag 20
- <210> 751 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 751 ctttaaagca actctgaaaa 20
- <210> 752 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 752 tactttaaag caactctgaa 20
- <210> 753 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 753 ggtactttaa agcaactctg 20
- <210> 754 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 754 caggtacttt aaagcaactc 20
- <210> 755 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 755 tacaggtact ttaaagcaac 20
- <210> 756 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 756 actacaggta ctttaaagca 20
- <210> 757 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 757 tcactacagg tactttaaag 20
- <210> 758 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 758 tctcactaca ggtactttaa 20
- <210> 759 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 759 tttctcacta caggtacttt 20
- <210> 760 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 760 agtttctcac tacaggtact 20
- <210> 761 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 761 tcagtttctc actacaggta 20
- <210> 762 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 762 taaatcagtt tctcactaca 20
- <210> 763 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 763 atcataaatc agtttctcac 20
- <210> 764 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 764 tgatcataaa tcagtttctc 20
- <210> 765 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 765 agtgatcata aatcagtttc 20
- <210> 766 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 766 caagtgatca taaatcagtt 20
- <210> 767 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 767 tccaagtgat cataaatcag 20
- <210> 768 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 768 cttccaagtg atcataaatc 20
- <210> 769 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 769 atcttccaag tgatcataaa 20
- <210> 770 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 770 aaatcttcca agtgatcata 20
- <210> 771 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 771 ctgagtttta taaaactata 20
- <210> 772 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 772 ttaactgagt tttataaaac 20
- <210> 773 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 773 ttttaactga gttttataaa 20
- <210> 774 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 774 cattttaact gagttttata 20
- <210> 775 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 775 gacattttaa ctgagtttta 20
- <210> 776 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 776 cagacatttt aactgagttt 20
- <210> 777 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 777 aacagacatt ttaactgagt 20
- <210> 778 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 778 gaaacagaca ttttaactga 20
- <210> 779 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 779 ttgaaacaga cattttaact 20
- <210> 780 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 780 tttaagtctg gcaaaataca 20
- <210> 781 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 781 gatttaagtc tggcaaaata 20
- <210> 782 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 782 gtgatttaag tctggcaaaa 20
- <210> 783 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 783 ctgtgattta agtctggcaa 20
- <210> 784 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 784 atctgtgatt taagtctggc 20
- <210> 785 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 785 acccatctgt gatttaagtc 20
- <210> 786 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 786 atacccatct gtgatttaag 20
- <210> 787 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 787 taatacccat ctgtgattta 20
- <210> 788 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 788 aaagaaattc tgacaagttt 20
- <210> 789 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 789 acaaagaaat tctgacaagt 20
- <210> 790 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 790 tgacaaagaa attctgacaa 20
- <210> 791 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 791 aatgacaaag aaattctgac 20
- <210> 792 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 792 tgaatgacaa agaaattctg 20
- <210> 793 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 793 cttgaatgac aaagaaattc 20
- <210> 794 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 794 ggcttgaatg acaaagaaat 20
- <210> 795 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 795 caggcttgaa tgacaaagaa 20
- <210> 796 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 796 cacaggcttg aatgacaaag 20
- <210> 797 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 797 ttcacaggct tgaatgacaa 20
- <210> 798 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 798 tattcacagg cttgaatgac 20
- <210> 799 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 799 ataagtgcca tacagggttt 20
- <210> 800 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 800 cataataagt gccatacagg 20
- <210> 801 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 801 tagcctcata ataagtgcca 20
- <210> 802 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 802 aatagcctca taataagtgc 20
- <210> 803 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 803 ttaatagcct cataataagt 20
- <210> 804 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 804 tcttttaata gcctcataat 20
- <210> 805 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 805 attcttttaa tagcctcata 20
- <210> 806 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 806 ttggattctt ttaatagcct 20
- <210> 807 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 807 atttggattc ttttaatagc 20
- <210> 808 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 808 gaatttggat tcttttaata 20
- <210> 809 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 809 ttgaatttgg attcttttaa 20
- <210> 810 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 810 gtttgaattt ggattctttt 20
- <210> 811 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 811 tagtttgaat ttggattctt 20
- <210> 812 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 812 tttagtttga atttggattc 20
- <210> 813 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 813 tttttagttt gaatttggat 20
- <210> 814 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 814 tttttttagt ttgaatttgg 20
- <210> 815 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 815 cgtttcctgt ctttgtactt 20
- <210> 816 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 816 caagccaaac gacttccagc 20
- <210> 817 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 817 cacaagccaa acgacttcca 20
- <210> 818 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 818 accacaagcc aaacgacttc 20
- <210> 819 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 819 acaccacaag ccaaacgact 20
- <210> 820 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 820 ttacaccaca agccaaacga 20
- <210> 821 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 821 ggataacaga tgagttaagg 20
- <210> 822 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 822 aggatacatt tctacagcta 20
- <210> 823 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 823 tcaggataca tttctacagc 20
- <210> 824 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 824 tatcaggata catttctaca 20
- <210> 825 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 825 tgtttatcag gatacatttc 20
- <210> 826 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 826 aatgtttatc aggatacatt 20
- <210> 827 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 827 ttaatgttta tcaggataca 20
- <210> 828 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 828 gtttaatgtt tatcaggata 20
- <210> 829 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 829 gtgtttaatg tttatcagga 20
- <210> 830 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 830 ttttaagatt acagtgttta 20
- <210> 831 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 831 acttttaaga ttacagtgtt 20
- <210> 832 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 832 acacttttaa gattacagtg 20
- <210> 833 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 833 ttacactttt aagattacag 20
- <210> 834 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 834 aattacactt ttaagattac 20
- <210> 835 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 835 acacaattac acttttaaga 20
- <210> 836 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 836 tcacacaatt acacttttaa 20
- <210> 837 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 837 aaagtcacac aattacactt 20
- <210> 838 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 838 tgaaaaagtc acacaattac 20
- <210> 839 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 839 tctgaaaaag tcacacaatt 20
- <210> 840 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 840 actctgaaaa agtcacacaa 20
- <210> 841 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 841 agcaactctg aaaaagtcac 20
- <210> 842 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 842 actttaaagc aactctgaaa 20
- <210> 843 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 843 gtactttaaa gcaactctga 20
- <210> 844 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 844 aggtacttta aagcaactct 20
- <210> 845 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 845 cactacaggt actttaaagc 20
- <210> 846 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 846 ttctcactac aggtacttta 20
- <210> 847 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 847 gtttctcact acaggtactt 20
- <210> 848 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 848 cagtttctca ctacaggtac 20
- <210> 849 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 849 atcagtttct cactacaggt 20
- <210> 850 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 850 aaatcagttt ctcactacag 20
- <210> 851 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 851 tcataaatca gtttctcact 20
- <210> 852 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 852 gtgatcataa atcagtttct 20
- <210> 853 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 853 aagtgatcat aaatcagttt 20
- <210> 854 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 854 ccaagtgatc ataaatcagt 20
- <210> 855 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 855 ttccaagtga tcataaatca 20
- <210> 856 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 856 tcttccaagt gatcataaat 20
- <210> 857 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 857 taactgagtt ttataaaact 20
- <210> 858 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 858 aaacagacat tttaactgag 20
- <210> 859 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 859 tgaaacagac attttaactg 20
- <210> 860 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 860 atttaagtct ggcaaaatac 20
- <210> 861 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 861 tgtgatttaa gtctggcaaa 20
- <210> 862 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 862 tctgtgattt aagtctggca 20
- <210> 863 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 863 catctgtgat ttaagtctgg 20
- <210> 864 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 864 cccatctgtg atttaagtct 20
- <210> 865 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 865 tacccatctg tgatttaagt 20
- <210> 866 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 866 aatacccatc tgtgatttaa 20
- <210> 867 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 867 ttaataccca tctgtgattt 20
- <210> 868 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 868 gacaaagaaa ttctgacaag 20
- <210> 869 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 869 gaatgacaaa gaaattctga 20
- <210> 870 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 870 aggcttgaat gacaaagaaa 20
- <210> 871 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 871 taagtgccat acagggtttt 20
- <210> 872 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 872 ataataagtg ccatacaggg 20
- <210> 873 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 873 cctcataata agtgccatac 20
- <210> 874 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 874 agcctcataa taagtgccat 20
- <210> 875 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 875 atagcctcat aataagtgcc 20
- <210> 876 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 876 cttttaatag cctcataata 20
- <210> 877 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 877 ttcttttaat agcctcataa 20
- <210> 878 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 878 gattctttta atagcctcat 20
- <210> 879 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 879 tggattcttt taatagcctc 20
- <210> 880 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 880 tttggattct tttaatagcc 20
- <210> 881 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 881 aatttggatt cttttaatag 20
- <210> 882 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 882 tgaatttgga ttcttttaat 20
- <210> 883 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 883 ttagtttgaa tttggattct 20
- <210> 884 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 884 ttttagtttg aatttggatt 20
- <210> 885 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 885 ttttttagtt tgaatttgga 20
- <210> 886 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 886 cagtccttta atgcttcccc 20
- <210> 887 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 887 gtcagtcctt taatgcttcc 20
- <210> 888 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 888 cagtcagtcc tttaatgctt 20
- <210> 889 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 889 ttcagtcagt cctttaatgc 20
- <210> 890 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 890 ggccttcagt cagtccttta 20
- <210> 891 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 891 tgcaggcctt cagtcagtcc 20
- <210> 892 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 892 catgcaggcc ttcagtcagt 20
- <210> 893 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 893 tcatgaacat ggaatccatg 20
- <210> 894 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 894 actcatgaac atggaatcca 20
- <210> 895 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 895 ctgtattatc tccaaactca 20
- <210> 896 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 896 actggtacag cctgctgtat 20
- <210> 897 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 897 gcactggtac agcctgctgt 20
- <210> 898 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 898 ctgcactggt acagcctgct 20
- <210> 899 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 899 acctgcactg gtacagcctg 20
- <210> 900 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 900 tttctggata gaggattaaa 20
- <210> 901 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 901 gttttctgga tagaggatta 20
- <210> 902 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 902 ccgtgttttc tggatagagg 20
- <210> 903 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 903 caccgtgttt tctggataga 20
- <210> 904 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 904 cccaccgtgt tttctggata 20
- <210> 905 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 905 ggcccaccgt gttttctgga 20
- <210> 906 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 906 ttggcccacc gtgttttctg 20
- <210> 907 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 907 ctttggccca ccgtgttttc 20
- <210> 908 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 908 tcctttggcc caccgtgttt 20
- <210> 909 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 909 aagtctccaa catgcctctc 20
- <210> 910 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 910 gcccaagtct ccaacatgcc 20
- <210> 911 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 911 ttgcccaagt ctccaacatg 20
- <210> 912 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 912 cattgcccaa gtctccaaca 20
- <210> 913 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 913 cagtcacatt gcccaagtct 20
- <210> 914 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 914 tcagcagtca cattgcccaa 20
- <210> 915 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 915 tgtcagcagt cacattgccc 20
- <210> 916 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 916 tttgtcagca gtcacattgc 20
- <210> 917 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 917 tctttgtcag cagtcacatt 20
- <210> 918 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 918 catctttgtc agcagtcaca 20
- <210> 919 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 919 accatctttg tcagcagtca 20
- <210> 920 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 920 ccacaccatc tttgtcagca 20
- <210> 921 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 921 ggccacacca tctttgtcag 20
- <210> 922 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 922 cacatcggcc acaccatctt 20
- <210> 923 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 923 gacacatcgg ccacaccatc 20
- <210> 924 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 924 aatagacaca tcggccacac 20
- <210> 925 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 925 tcaatagaca catcggccac 20
- <210> 926 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 926 cttcaataga cacatcggcc 20
- <210> 927 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 927 atcttcaata gacacatcgg 20
- <210> 928 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 928 gaatcttcaa tagacacatc 20
- <210> 929 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 929 cagaatcttc aatagacaca 20
- <210> 930 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 930 cacagaatct tcaatagaca 20
- <210> 931 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 931 atcacagaat cttcaataga 20
- <210> 932 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 932 agatcacaga atcttcaata 20
- <210> 933 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 933 tgagatcaca gaatcttcaa 20
- <210> 934 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 934 agtgagatca cagaatcttc 20
- <210> 935 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 935 tgagagtgag atcacagaat 20
- <210> 936 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 936 gtctcctgag agtgagatca 20
- <210> 937 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 937 tggtctcctg agagtgagat 20
- <210> 938 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 938 aatggtctcc tgagagtgag 20
- <210> 939 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 939 gcaatggtct cctgagagtg 20
- <210> 940 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 940 atgcaatggt ctcctgagag 20
- <210> 941 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 941 tgatgcaatg gtctcctgag 20
- <210> 942 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 942 aatgatgcaa tggtctcctg 20
- <210> 943 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 943 ccaatgatgc aatggtctcc 20
- <210> 944 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 944 ggccaatgat gcaatggtct 20
- <210> 945 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 945 gcggccaatg atgcaatggt 20
- <210> 946 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 946 gtgcggccaa tgatgcaatg 20
- <210> 947 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 947 gtgtgcggcc aatgatgcaa 20
- <210> 948 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 948 cagtgtgcgg ccaatgatgc 20
- <210> 949 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 949 accagtgtgc ggccaatgat 20
- <210> 950 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 950 ccaccagtgt gcggccaatg 20
- <210> 951 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 951 gaccaccagt gtgcggccaa 20
- <210> 952 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 952 tggaccacca gtgtgcggcc 20
- <210> 953 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 953 ttcatggacc accagtgtgc 20
- <210> 954 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 954 ttttcatgga ccaccagtgt 20
- <210> 955 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 955 ctttttcatg gaccaccagt 20
- <210> 956 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 956 ccactctggc cccaaac 17
- <210> 957 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 957 cccactctgg ccccaaa 17
- <210> 958 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 958 gcccactctg gccccaa 17
- <210> 959 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 959 cgcccactct ggcccca 17
- <210> 960 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 960 cgactacttt ataggcc 17
- <210> 961 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 961 gcgactactt tataggc 17
- <210> 962 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 962 cgcgactact ttatagg 17
- <210> 963 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 963 ccgcgactac tttatag 17
- <210> 964 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 964 cgctgcagga gactacg 17
- <210> 965 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 965 acgctgcagg agactac 17
- <210> 966 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 966 tcgcccttca gcacgca 17
- <210> 967 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 967 gtcgcccttc agcacgc 17
- <210> 968 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 968 cgtcgccctt cagcacg 17
- <210> 969 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 969 ccgtcgccct tcagcac 17
- <210> 970 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 970 gccgtcgccc ttcagca 17
- <210> 971 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 971 tctgctcgaa attgatg 17
- <210> 972 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 972 ttctgctcga aattgat 17
- <210> 973 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 973 cttctgctcg aaattga 17
- <210> 974 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 974 ccttctgctc gaaattg 17
- <210> 975 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 975 tccttctgct cgaaatt 17
- <210> 976 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 976 ttccttctgc tcgaaat 17
- <210> 977 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 977 tttccttctg ctcgaaa 17
- <210> 978 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 978 ctttccttct gctcgaa 17
- <210> 979 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 979 actttccttc tgctcga 17
- <210> 980 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 980 tactttcctt ctgctcg 17
- <210> 981 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 981 ttactttcct tctgctc 17
- <210> 982 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 982 attactttcc ttctgct 17
- <210> 983 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 983 cattactttc cttctgc 17
- <210> 984 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 984 ccattacttt ccttctg 17
- <210> 985 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 985 tccattactt tccttct 17
- <210> 986 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 986 gtccattact ttccttc 17
- <210> 987 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 987 ggtccattac tttcctt 17
- <210> 988 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 988 tggtccatta ctttcct 17
- <210> 989 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 989 ctggtccatt actttcc 17
- <210> 990 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 990 actggtccat tactttc 17
- <210> 991 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 991 cactggtcca ttacttt 17
- <210> 992 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 992 tcactggtcc attactt 17
- <210> 993 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 993 ttcactggtc cattact 17
- <210> 994 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 994 cttcactggt ccattac 17
- <210> 995 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 995 ccttcactgg tccatta 17
- <210> 996 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 996 accttcactg gtccatt 17
- <210> 997 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 997 caccttcact ggtccat 17
- <210> 998 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 998 acaccttcac tggtcca 17
- <210> 999 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 999 cacaccttca ctggtcc 17
- <210> 1000 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1000 ccacaccttc actggtc 17
- <210> 1001 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1001 cccacacctt cactggt 17
- <210> 1002 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1002 ccccacacct tcactgg 17
- <210> 1003 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1003 ttccccacac cttcact 17
- <210> 1004 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1004 cttccccaca ccttcac 17
- <210> 1005 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1005 gcttccccac accttca 17
- <210> 1006 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1006 tgcttcccca caccttc 17
- <210> 1007 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1007 atgcttcccc acacctt 17
- <210> 1008 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1008 aatgcttccc cacacct 17
- <210> 1009 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1009 taatgcttcc ccacacc 17
- <210> 1010 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1010 atgcaggcct tcagtca 17
- <210> 1011 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1011 catgcaggcc ttcagtc 17
- <210> 1012 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1012 ccatgcaggc cttcagt 17
- <210> 1013 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1013 tccatgcagg ccttcag 17
- <210> 1014 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1014 atccatgcag gccttca 17
- <210> 1015 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1015 aatccatgca ggccttc 17
- <210> 1016 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1016 gaatccatgc aggcctt 17
- <210> 1017 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1017 ggaatccatg caggcct 17
- <210> 1018 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1018 tggaatccat gcaggcc 17
- <210> 1019 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1019 atggaatcca tgcaggc 17
- <210> 1020 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1020 catggaatcc atgcagg 17
- <210> 1021 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1021 acatggaatc catgcag 17
- <210> 1022 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1022 aacatggaat ccatgca 17
- <210> 1023 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1023 gaacatggaa tccatgc 17
- <210> 1024 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1024 tgaacatgga atccatg 17
- <210> 1025 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1025 atgaacatgg aatccat 17
- <210> 1026 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1026 ctgcactggt acagcct 17
- <210> 1027 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1027 cctgcactgg tacagcc 17
- <210> 1028 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1028 acctgcactg gtacagc 17
- <210> 1029 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1029 gacctgcact ggtacag 17
- <210> 1030 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1030 ggacctgcac tggtaca 17
- <210> 1031 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1031 aggacctgca ctggtac 17
- <210> 1032 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1032 gaggacctgc actggta 17
- <210> 1033 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1033 tgaggacctg cactggt 17
- <210> 1034 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1034 gtgaggacct gcactgg 17
- <210> 1035 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1035 agtgaggacc tgcactg 17
- <210> 1036 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1036 aagtgaggac ctgcact 17
- <210> 1037 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1037 aaagtgagga cctgcac 17
- <210> 1038 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1038 taaagtgagg acctgca 17
- <210> 1039 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1039 ttaaagtgag gacctgc 17
- <210> 1040 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1040 attaaagtga ggacctg 17
- <210> 1041 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1041 gattaaagtg aggacct 17
- <210> 1042 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1042 ggattaaagt gaggacc 17
- <210> 1043 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1043 aggattaaag tgaggac 17
- <210> 1044 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1044 gaggattaaa gtgagga 17
- <210> 1045 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1045 agaggattaa agtgagg 17
- <210> 1046 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1046 tagaggatta aagtgag 17
- <210> 1047 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1047 atagaggatt aaagtga 17
- <210> 1048 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1048 gatagaggat taaagtg 17
- <210> 1049 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1049 ggatagagga ttaaagt 17
- <210> 1050 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1050 tggatagagg attaaag 17
- <210> 1051 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1051 ctggatagag gattaaa 17
- <210> 1052 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1052 tctggataga ggattaa 17
- <210> 1053 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1053 ctttggccca ccgtgtt 17
- <210> 1054 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1054 cctttggccc accgtgt 17
- <210> 1055 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1055 tcctttggcc caccgtg 17
- <210> 1056 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1056 atcctttggc ccaccgt 17
- <210> 1057 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1057 catcctttgg cccaccg 17
- <210> 1058 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1058 tcatcctttg gcccacc 17
- <210> 1059 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1059 ttcatccttt ggcccac 17
- <210> 1060 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1060 cttcatcctt tggccca 17
- <210> 1061 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1061 tcttcatcct ttggccc 17
- <210> 1062 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1062 ctcttcatcc tttggcc 17
- <210> 1063 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1063 tctcttcatc ctttggc 17
- <210> 1064 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1064 ctctcttcat cctttgg 17
- <210> 1065 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1065 tgcctctctt catcctt 17
- <210> 1066 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1066 atgcctctct tcatcct 17
- <210> 1067 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1067 catgcctctc ttcatcc 17
- <210> 1068 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1068 acatgcctct cttcatc 17
- <210> 1069 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1069 aacatgcctc tcttcat 17
- <210> 1070 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1070 caacatgcct ctcttca 17
- <210> 1071 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1071 ccaacatgcc tctcttc 17
- <210> 1072 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1072 tccaacatgc ctctctt 17
- <210> 1073 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1073 ctccaacatg cctctct 17
- <210> 1074 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1074 tctccaacat gcctctc 17
- <210> 1075 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1075 gtctccaaca tgcctct 17
- <210> 1076 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1076 agcagtcaca ttgccca 17
- <210> 1077 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1077 cagcagtcac attgccc 17
- <210> 1078 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1078 agacacatcg gccacac 17
- <210> 1079 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1079 cttcaataga cacatcg 17
- <210> 1080 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1080 gagatcacag aatcttc 17
- <210> 1081 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1081 tttttcatgg accacca 17
- <210> 1082 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1082 ctttttcatg gaccacc 17
- <210> 1083 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1083 gctttttcat ggaccac 17
- <210> 1084 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1084 tgctttttca tggacca 17
- <210> 1085 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1085 ctgctttttc atggacc 17
- <210> 1086 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1086 tctgcttttt catggac 17
- <210> 1087 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1087 atctgctttt tcatgga 17
- <210> 1088 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1088 catctgcttt ttcatgg 17
- <210> 1089 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1089 tcatctgctt tttcatg 17
- <210> 1090 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1090 gtcatctgct ttttcat 17
- <210> 1091 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1091 agtcatctgc tttttca 17
- <210> 1092 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1092 aagtcatctg ctttttc 17
- <210> 1093 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1093 caagtcatct gcttttt 17
- <210> 1094 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1094 ccaagtcatc tgctttt 17
- <210> 1095 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1095 cccaagtcat ctgcttt 17
- <210> 1096 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1096 gcccaagtca tctgctt 17
- <210> 1097 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1097 tgcccaagtc atctgct 17
- <210> 1098 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1098 ttgcccaagt catctgc 17
- <210> 1099 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1099 ccacctttgc ccaagtc 17
- <210> 1100 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1100 tccacctttg cccaagt 17
- <210> 1101 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1101 ttccaccttt gcccaag 17
- <210> 1102 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1102 tttccacctt tgcccaa 17
- <210> 1103 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1103 atttccacct ttgccca 17
- <210> 1104 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1104 catttccacc tttgccc 17
- <210> 1105 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1105 tcatttccac ctttgcc 17
- <210> 1106 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1106 ttcatttcca cctttgc 17
- <210> 1107 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1107 tcttcatttc caccttt 17
- <210> 1108 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1108 ctttcttcat ttccacc 17
- <210> 1109 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1109 actttcttca tttccac 17
- <210> 1110 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1110 tactttcttc atttcca 17
- <210> 1111 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1111 aattacacca caagcca 17
- <210> 1112 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1112 caattacacc acaagcc 17
- <210> 1113 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1113 ccaattacac cacaagc 17
- <210> 1114 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1114 cccaattaca ccacaag 17
- <210> 1115 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1115 gatcccaatt acaccac 17
- <210> 1116 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1116 cgatcccaat tacacca 17
- <210> 1117 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1117 gcgatcccaa ttacacc 17
- <210> 1118 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1118 ggcgatccca attacac 17
- <210> 1119 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1119 gggcgatccc aattaca 17
- <210> 1120 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1120 tgggcgatcc caattac 17
- <210> 1121 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1121 ttgggcgatc ccaatta 17
- <210> 1122 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1122 attgggcgat cccaatt 17
- <210> 1123 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1123 tattgggcga tcccaat 17
- <210> 1124 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1124 ttattgggcg atcccaa 17
- <210> 1125 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1125 tttattgggc gatccca 17
- <210> 1126 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1126 gtttattggg cgatccc 17
- <210> 1127 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1127 tgtttattgg gcgatcc 17
- <210> 1128 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1128 atgtttattg ggcgatc 17
- <210> 1129 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1129 aatgtttatt gggcgat 17
- <210> 1130 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1130 gaatgtttat tgggcga 17
- <210> 1131 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1131 ggaatgttta ttgggcg 17
- <210> 1132 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1132 aagggaatgt ttattgg 17
- <210> 1133 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1133 caagggaatg tttattg 17
- <210> 1134 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1134 ccaagggaat gtttatt 17
- <210> 1135 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1135 tccaagggaa tgtttat 17
- <210> 1136 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1136 atccaaggga atgttta 17
- <210> 1137 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1137 catccaaggg aatgttt 17
- <210> 1138 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1138 acatccaagg gaatgtt 17
- <210> 1139 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1139 tacatccaag ggaatgt 17
- <210> 1140 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1140 ctacatccaa gggaatg 17
- <210> 1141 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1141 actacatcca agggaat 17
- <210> 1142 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1142 gactacatcc aagggaa 17
- <210> 1143 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1143 agactacatc caaggga 17
- <210> 1144 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1144 cagactacat ccaaggg 17
- <210> 1145 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1145 tcagactaca tccaagg 17
- <210> 1146 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1146 ctcagactac atccaag 17
- <210> 1147 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1147 cctcagacta catccaa 17
- <210> 1148 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1148 gcctcagact acatcca 17
- <210> 1149 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1149 ggcctcagac tacatcc 17
- <210> 1150 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1150 gggcctcaga ctacatc 17
- <210> 1151 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1151 gataacagat gagttaa 17
- <210> 1152 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1152 ggataacaga tgagtta 17
- <210> 1153 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1153 aggataacag atgagtt 17
- <210> 1154 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1154 caggataaca gatgagt 17
- <210> 1155 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1155 gcaggataac agatgag 17
- <210> 1156 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1156 agcaggataa cagatga 17
- <210> 1157 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1157 tagcaggata acagatg 17
- <210> 1158 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1158 ctagcaggat aacagat 17
- <210> 1159 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1159 gctagcagga taacaga 17
- <210> 1160 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1160 agctagcagg ataacag 17
- <210> 1161 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1161 cagctagcag gataaca 17
- <210> 1162 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1162 acagctagca ggataac 17
- <210> 1163 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1163 tacagctagc aggataa 17
- <210> 1164 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1164 ctacagctag caggata 17
- <210> 1165 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1165 tctacagcta gcaggat 17
- <210> 1166 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1166 ttctacagct agcagga 17
- <210> 1167 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1167 tttctacagc tagcagg 17
- <210> 1168 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1168 atttctacag ctagcag 17
- <210> 1169 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1169 catttctaca gctagca 17
- <210> 1170 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1170 atacatttct acagcta 17
- <210> 1171 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1171 gatacatttc tacagct 17
- <210> 1172 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1172 gtgtttaatg tttatca 17
- <210> 1173 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1173 agtgtttaat gtttatc 17
- <210> 1174 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1174 cagtgtttaa tgtttat 17
- <210> 1175 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1175 acagtgttta atgttta 17
- <210> 1176 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1176 tacagtgttt aatgttt 17
- <210> 1177 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1177 ttacagtgtt taatgtt 17
- <210> 1178 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1178 attacagtgt ttaatgt 17
- <210> 1179 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1179 gattacagtg tttaatg 17
- <210> 1180 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1180 agattacagt gtttaat 17
- <210> 1181 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1181 aagattacag tgtttaa 17
- <210> 1182 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1182 taagattaca gtgttta 17
- <210> 1183 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1183 ttaagattac agtgttt 17
- <210> 1184 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1184 atcttccaag tgatcat 17
- <210> 1185 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1185 aatcttccaa gtgatca 17
- <210> 1186 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1186 aaatcttcca agtgatc 17
- <210> 1187 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1187 caaatcttcc aagtgat 17
- <210> 1188 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1188 tacaaatctt ccaagtg 17
- <210> 1189 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1189 atacaaatct tccaagt 17
- <210> 1190 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1190 tatacaaatc ttccaag 17
- <210> 1191 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1191 ctatacaaat cttccaa 17
- <210> 1192 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1192 actatacaaa tcttcca 17
- <210> 1193 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1193 aactatacaa atcttcc 17
- <210> 1194 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1194 aaactataca aatcttc 17
- <210> 1195 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1195 ataaaactat acaaatc 17
- <210> 1196 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1196 gttttataaa actatac 17
- <210> 1197 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1197 gagttttata aaactat 17
- <210> 1198 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1198 attgaaacag acatttt 17
- <210> 1199 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1199 cattgaaaca gacattt 17
- <210> 1200 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1200 tcattgaaac agacatt 17
- <210> 1201 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1201 gtcattgaaa cagacat 17
- <210> 1202 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1202 ggtcattgaa acagaca 17
- <210> 1203 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1203 aggtcattga aacagac 17
- <210> 1204 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1204 caggtcattg aaacaga 17
- <210> 1205 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1205 acaggtcatt gaaacag 17
- <210> 1206 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1206 tacaggtcat tgaaaca 17
- <210> 1207 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1207 atacaggtca ttgaaac 17
- <210> 1208 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1208 aatacaggtc attgaaa 17
- <210> 1209 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1209 aaatacaggt cattgaa 17
- <210> 1210 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1210 aaaatacagg tcattga 17
- <210> 1211 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1211 caaaatacag gtcattg 17
- <210> 1212 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1212 gcaaaataca ggtcatt 17
- <210> 1213 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1213 ggcaaaatac aggtcat 17
- <210> 1214 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1214 tggcaaaata caggtca 17
- <210> 1215 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1215 ctggcaaaat acaggtc 17
- <210> 1216 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1216 tctggcaaaa tacaggt 17
- <210> 1217 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1217 gtctggcaaa atacagg 17
- <210> 1218 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1218 agtctggcaa aatacag 17
- <210> 1219 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1219 aagtctggca aaataca 17
- <210> 1220 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1220 taagtctggc aaaatac 17
- <210> 1221 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1221 ttaagtctgg caaaata 17
- <210> 1222 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1222 aatacccatc tgtgatt 17
- <210> 1223 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1223 taatacccat ctgtgat 17
- <210> 1224 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1224 ttaataccca tctgtga 17
- <210> 1225 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1225 tttaataccc atctgtg 17
- <210> 1226 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1226 gtttaatacc catctgt 17
- <210> 1227 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1227 agtttaatac ccatctg 17
- <210> 1228 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1228 aagtttaata cccatct 17
- <210> 1229 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1229 caagtttaat acccatc 17
- <210> 1230 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1230 acaagtttaa tacccat 17
- <210> 1231 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1231 gacaagttta ataccca 17
- <210> 1232 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1232 tgacaagttt aataccc 17
- <210> 1233 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1233 ctgacaagtt taatacc 17
- <210> 1234 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1234 tctgacaagt ttaatac 17
- <210> 1235 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1235 ttctgacaag tttaata 17
- <210> 1236 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1236 attctgacaa gtttaat 17
- <210> 1237 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1237 aattctgaca agtttaa 17
- <210> 1238 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1238 aaattctgac aagttta 17
- <210> 1239 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1239 gaaattctga caagttt 17
- <210> 1240 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1240 agaaattctg acaagtt 17
- <210> 1241 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1241 aagaaattct gacaagt 17
- <210> 1242 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1242 ttcacaggct tgaatga 17
- <210> 1243 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1243 attcacaggc ttgaatg 17
- <210> 1244 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1244 tattcacagg cttgaat 17
- <210> 1245 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1245 ttattcacag gcttgaa 17
- <210> 1246 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1246 tttattcaca ggcttga 17
- <210> 1247 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1247 ttttattcac aggcttg 17
- <210> 1248 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1248 tttttattca caggctt 17
- <210> 1249 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1249 gtttttattc acaggct 17
- <210> 1250 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1250 ggtttttatt cacaggc 17
- <210> 1251 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1251 gggtttttat tcacagg 17
- <210> 1252 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1252 agggttttta ttcacag 17
- <210> 1253 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1253 cagggttttt attcaca 17
- <210> 1254 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1254 acagggtttt tattcac 17
- <210> 1255 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1255 tacagggttt ttattca 17
- <210> 1256 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1256 atacagggtt tttattc 17
- <210> 1257 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1257 catacagggt ttttatt 17
- <210> 1258 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1258 ccatacaggg tttttat 17
- <210> 1259 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1259 gccatacagg gttttta 17
- <210> 1260 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1260 tgccatacag ggttttt 17
- <210> 1261 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1261 gtgccataca gggtttt 17
- <210> 1262 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1262 agtgccatac agggttt 17
- <210> 1263 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1263 ttggattctt ttaatag 17
- <210> 1264 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1264 ttttagtttg aatttgg 17
- <210> 1265 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1265 ctcgcccact ctggccccaa 20
- <210> 1266 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1266 gcctcgccca ctctggcccc 20
- <210> 1267 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1267 gcgcctcgcc cactctggcc 20
- <210> 1268 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1268 ccgcgcctcg cccactctgg 20
- <210> 1269 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1269 ctccgcgcct cgcccactct 20
- <210> 1270 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1270 acctccgcgc ctcgcccact 20
- <210> 1271 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1271 agacctccgc gcctcgccca 20
- <210> 1272 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1272 ccagacctcc gcgcctcgcc 20
- <210> 1273 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1273 ggccagacct ccgcgcctcg 20
- <210> 1274 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1274 tataggccag acctccgcgc 20
- <210> 1275 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1275 tttataggcc agacctccgc 20
- <210> 1276 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1276 gactacttta taggccagac 20
- <210> 1277 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1277 gcgactactt tataggccag 20
- <210> 1278 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1278 ctccgcgact actttatagg 20
- <210> 1279 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1279 gtctccgcga ctactttata 20
- <210> 1280 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1280 ccgtctccgc gactacttta 20
- <210> 1281 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1281 ccccgtctcc gcgactactt 20
- <210> 1282 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1282 caccccgtct ccgcgactac 20
- <210> 1283 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1283 agcaccccgt ctccgcgact 20
- <210> 1284 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1284 ccagcacccc gtctccgcga 20
- <210> 1285 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1285 aaccagcacc ccgtctccgc 20
- <210> 1286 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1286 caaaccagca ccccgtctcc 20
- <210> 1287 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1287 cgcaaaccag caccccgtct 20
- <210> 1288 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1288 acgacgcaaa ccagcacccc 20
- <210> 1289 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1289 ctacgacgca aaccagcacc 20
- <210> 1290 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1290 gactacgacg caaaccagca 20
- <210> 1291 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1291 gagactacga cgcaaaccag 20
- <210> 1292 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1292 aggagactac gacgcaaacc 20
- <210> 1293 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1293 gcaggagact acgacgcaaa 20
- <210> 1294 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1294 ctgcaggaga ctacgacgca 20
- <210> 1295 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1295 cgctgcagga gactacgacg 20
- <210> 1296 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1296 tgcaacggaa accccagacg 20
- <210> 1297 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1297 actgcaacgg aaaccccaga 20
- <210> 1298 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1298 gaggactgca acggaaaccc 20
- <210> 1299 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1299 ccgaggactg caacggaaac 20
- <210> 1300 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1300 ttccgaggac tgcaacggaa 20
- <210> 1301 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1301 ctggttccga ggactgcaac 20
- <210> 1302 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1302 ggtcctggtt ccgaggactg 20
- <210> 1303 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1303 ccgaggtcct ggttccgagg 20
- <210> 1304 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1304 cgccgaggtc ctggttccga 20
- <210> 1305 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1305 cacgccgagg tcctggttcc 20
- <210> 1306 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1306 gccacgccga ggtcctggtt 20
- <210> 1307 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1307 ctaggccacg ccgaggtcct 20
- <210> 1308 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1308 cgctaggcca cgccgaggtc 20
- <210> 1309 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1309 ctcgctaggc cacgccgagg 20
- <210> 1310 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1310 aactcgctag gccacgccga 20
- <210> 1311 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1311 ataactcgct aggccacgcc 20
- <210> 1312 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1312 ccataactcg ctaggccacg 20
- <210> 1313 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1313 cgccataact cgctaggcca 20
- <210> 1314 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1314 tgggccgtcg cccttcagca 20
- <210> 1315 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1315 actgggccgt cgcccttcag 20
- <210> 1316 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1316 gcactgggcc gtcgcccttc 20
- <210> 1317 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1317 ctgcactggg ccgtcgccct 20
- <210> 1318 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1318 tgccctgcac tgggccgtcg 20
- <210> 1319 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1319 gatgccctgc actgggccgt 20
- <210> 1320 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1320 atgatgccct gcactgggcc 20
- <210> 1321 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1321 attgatgatg ccctgcactg 20
- <210> 1322 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1322 aaattgatga tgccctgcac 20
- <210> 1323 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1323 cgaaattgat gatgccctgc 20
- <210> 1324 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1324 ctcgaaattg atgatgccct 20
- <210> 1325 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1325 tgctcgaaat tgatgatgcc 20
- <210> 1326 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1326 tctgctcgaa attgatgatg 20
- <210> 1327 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1327 cttctgctcg aaattgatga 20
- <210> 1328 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1328 tttaatgctt ccccacacct 20
- <210> 1329 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1329 cctttaatgc ttccccacac 20
- <210> 1330 <211> 20 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1330 gtcctttaat gcttccccac 20
- <210> 1331 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1331 cccttcagca cgcacac 17
- <210> 1332 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1332 gcccttcagc acgcaca 17
- <210> 1333 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1333 cgcccttcag cacgcac 17
- <210> 1334 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1334 caccacaagc caaacga 17
- <210> 1335 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1335 acaccacaag ccaaacg 17
- <210> 1336 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1336 tacaccacaa gccaaac 17
- <210> 1337 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1337 ttacaccaca agccaaa 17
- <210> 1338 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1338 attacaccac aagccaa 17
- <210> 1339 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1339 aacagatgag ttaaggg 17
- <210> 1340 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1340 taacagatga gttaagg 17
- <210> 1341 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1341 ataacagatg agttaag 17
- <210> 1342 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1342 ggatacattt ctacagc 17
- <210> 1343 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1343 aggatacatt tctacag 17
- <210> 1344 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1344 caggatacat ttctaca 17
- <210> 1345 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1345 ttatcaggat acatttc 17
- <210> 1346 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1346 gtttatcagg atacatt 17
- <210> 1347 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1347 tgtttatcag gatacat 17
- <210> 1348 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1348 atgtttatca ggataca 17
- <210> 1349 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1349 aatgtttatc aggatac 17
- <210> 1350 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1350 taatgtttat caggata 17
- <210> 1351 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1351 ttaatgttta tcaggat 17
- <210> 1352 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1352 gtttaatgtt tatcagg 17
- <210> 1353 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1353 cttttaagat tacagtg 17
- <210> 1354 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1354 cacttttaag attacag 17
- <210> 1355 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1355 tcacacaatt acacttt 17
- <210> 1356 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1356 gtcacacaat tacactt 17
- <210> 1357 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1357 aagtcacaca attacac 17
- <210> 1358 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1358 aggtacttta aagcaac 17
- <210> 1359 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1359 acaggtactt taaagca 17
- <210> 1360 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1360 tacaggtact ttaaagc 17
- <210> 1361 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1361 ctacaggtac tttaaag 17
- <210> 1362 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1362 cactacaggt actttaa 17
- <210> 1363 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1363 tcactacagg tacttta 17
- <210> 1364 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1364 ctcactacag gtacttt 17
- <210> 1365 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1365 tctcactaca ggtactt 17
- <210> 1366 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1366 ttctcactac aggtact 17
- <210> 1367 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1367 tttctcacta caggtac 17
- <210> 1368 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1368 gtttctcact acaggta 17
- <210> 1369 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1369 agtttctcac tacaggt 17
- <210> 1370 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1370 cagtttctca ctacagg 17
- <210> 1371 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1371 tcagtttctc actacag 17
- <210> 1372 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1372 atcagtttct cactaca 17
- <210> 1373 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1373 aatcagtttc tcactac 17
- <210> 1374 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1374 gatcataaat cagtttc 17
- <210> 1375 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1375 tgatcataaa tcagttt 17
- <210> 1376 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1376 gtgatcataa atcagtt 17
- <210> 1377 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1377 agtgatcata aatcagt 17
- <210> 1378 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1378 caagtgatca taaatca 17
- <210> 1379 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1379 ccaagtgatc ataaatc 17
- <210> 1380 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1380 tccaagtgat cataaat 17
- <210> 1381 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1381 cttccaagtg atcataa 17
- <210> 1382 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1382 tcttccaagt gatcata 17
- <210> 1383 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1383 agacatttta actgagt 17
- <210> 1384 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1384 gatttaagtc tggcaaa 17
- <210> 1385 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1385 tgatttaagt ctggcaa 17
- <210> 1386 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1386 gtgatttaag tctggca 17
- <210> 1387 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1387 tgtgatttaa gtctggc 17
- <210> 1388 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1388 ctgtgattta agtctgg 17
- <210> 1389 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1389 tctgtgattt aagtctg 17
- <210> 1390 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1390 atctgtgatt taagtct 17
- <210> 1391 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1391 catctgtgat ttaagtc 17
- <210> 1392 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1392 ccatctgtga tttaagt 17
- <210> 1393 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1393 cccatctgtg atttaag 17
- <210> 1394 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1394 acccatctgt gatttaa 17
- <210> 1395 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1395 tacccatctg tgattta 17
- <210> 1396 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1396 gcttgaatga caaagaa 17
- <210> 1397 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1397 ggcttgaatg acaaaga 17
- <210> 1398 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1398 cacaggcttg aatgaca 17
- <210> 1399 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1399 tcacaggctt gaatgac 17
- <210> 1400 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1400 aagtgccata cagggtt 17
- <210> 1401 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1401 taagtgccat acagggt 17
- <210> 1402 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1402 ataagtgcca tacaggg 17
- <210> 1403 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1403 aataagtgcc atacagg 17
- <210> 1404 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1404 taataagtgc catacag 17
- <210> 1405 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1405 ataataagtg ccataca 17
- <210> 1406 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1406 cataataagt gccatac 17
- <210> 1407 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1407 tcataataag tgccata 17
- <210> 1408 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1408 ctcataataa gtgccat 17
- <210> 1409 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1409 cctcataata agtgcca 17
- <210> 1410 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1410 gcctcataat aagtgcc 17
- <210> 1411 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1411 agcctcataa taagtgc 17
- <210> 1412 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1412 tagcctcata ataagtg 17
- <210> 1413 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1413 atagcctcat aataagt 17
- <210> 1414 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1414 aatagcctca taataag 17
- <210> 1415 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1415 cttttaatag cctcata 17
- <210> 1416 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1416 tcttttaata gcctcat 17
- <210> 1417 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1417 ggattctttt aatagcc 17
- <210> 1418 <211> 17 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1418 ttagtttgaa tttggat 17
- <210> 1419 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1419 gtcgcccttc agcacgca 18
- <210> 1420 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1420 cccacacctt cactgg 16
- <210> 1421 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1421 ttccccacac cttcactg 18
- <210> 1422 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1422 ccccacacct tcactg 16
- <210> 1423 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1423 cttccccaca ccttcact 18
- <210> 1424 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1424 tccccacacc ttcact 16
- <210> 1425 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1425 gcttccccac accttcac 18
- <210> 1426 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1426 ttccccacac cttcac 16
- <210> 1427 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1427 cttccccaca ccttca 16
- <210> 1428 <211> 19 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1428 aggatacatt tctacagct 19
- <210> 1429 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1429 atacatttct acagctag 18
- <210> 1430 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1430 gatacatttc tacagcta 18
- <210> 1431 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1431 tacatttcta cagcta 16
- <210> 1432 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1432 ggatacattt ctacagct 18
- <210> 1433 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1433 atacatttct acagct 16
- <210> 1434 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1434 aggatacatt tctacagc 18
- <210> 1435 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1435 gatacatttc tacagc 16
- <210> 1436 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1436 caggatacat ttctacag 18
- <210> 1437 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1437 atgtttatca ggatac 16
- <210> 1438 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1438 ttaatgttta tcaggata 18
- <210> 1439 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1439 tttaatgttt atcaggat 18
- <210> 1440 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1440 gtttaatgtt tatcagga 18
- <210> 1441 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1441 ttaatgttta tcagga 16
- <210> 1442 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1442 tgtttaatgt ttatcagg 18
- <210> 1443 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1443 tttaatgttt atcagg 16
- <210> 1444 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1444 gtgtttaatg tttatcag 18
- <210> 1445 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1445 gtttaatgtt tatcag 16
- <210> 1446 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1446 agtgtttaat gtttatca 18
- <210> 1447 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1447 tgtttaatgt ttatca 16
- <210> 1448 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1448 cagtgtttaa tgtttatc 18
- <210> 1449 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1449 gtgtttaatg tttatc 16
- <210> 1450 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1450 acagtgttta atgtttat 18
- <210> 1451 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1451 tacagtgttt aatgttta 18
- <210> 1452 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1452 cagtgtttaa tgttta 16
- <210> 1453 <211> 18 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1453 ttacagtgtt taatgttt 18
- <210> 1454 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1454 acagtgttta atgttt 16
- <210> 1455 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1455 ggatacattt ctacag 16
- <210> 1456 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1456 taatgtttat caggat 16
- <210> 1457 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1457 agtgtttaat gtttat 16
- <210> 1458 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1458 catttctaca gctagc 16
- <210> 1459 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1459 acatttctac agctag 16
- <210> 1460 <211> 16 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1460 aatgtttatc aggata 16
- <210> 1461 <211> 19 <212> DNA <213> Artificial sequence
- <220> <223> Synthetic oligonucleotide
- <400> 1461 caggatacat ttctacagc 19
Claims (10)
- An antisense compound according to the following formula: mCes Aeo Ges Geo Aes Tds Ads mCds Ads Tds Tds Tds mCds Tds Ads mCeo Aes Geo mCes Te (nucleobase sequence of SEQ ID NO: 725) wherein,A = an adenine,mC = a 5-methylcytosine,G = a guanine,T = a thymine,e = a 2'-O-methoxyethylribose modified sugar,d = a 2'-deoxyribose sugar,s = a phosphorothioate internucleoside linkage, ando = a phosphodiester internucleoside linkage;or a pharmaceutically acceptable salt thereof.
- The antisense compound of claim 1.
- The pharmaceutically acceptable salt of the antisense compound of claim 1.
- A pharmaceutical composition comprising the antisense compound or the pharmaceutically acceptable salt thereof of claim 1, the antisense compound of claim 2 or the pharmaceutically acceptable salt of claim 3, and at least one of a pharmaceutically acceptable carrier or diluent.
- The pharmaceutical composition of claim 4, wherein the pharmaceutically acceptable diluent is phosphate-buffered saline.
- The antisense compound or the pharmaceutically acceptable salt thereof of claim 1, the antisense compound of claim 2, the pharmaceutically acceptable salt of claim 3, or the pharmaceutical composition of claim 4 or 5, for use in therapy in a human subject.
- The antisense compound or the pharmaceutically acceptable salt thereof of claim 1, the antisense compound of claim 2, the pharmaceutically acceptable salt of claim 3, or the pharmaceutical composition of claim 4 or 5, for use in treating a SOD-1 associated disease.
- The antisense compound or the pharmaceutically acceptable salt thereof of claim 1, the antisense compound of claim 2, the pharmaceutically acceptable salt of claim 3, or the pharmaceutical composition of claim 4 or 5, for use in preventing a SOD-1 associated disease.
- The antisense compound, the pharmaceutically acceptable salt, or the pharmaceutical composition for the use of claim 7 or 8, wherein the SOD-1 associated disease is a neurodegenerative disorder.
- The antisense compound, the pharmaceutically acceptable salt, or the pharmaceutical composition for the use of claim 7 or 8, wherein the SOD-1 associated disease is amyotrophic lateral sclerosis.
Applications Claiming Priority (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US61/973,803 | 2014-04-01 |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| HK1233301A1 HK1233301A1 (en) | 2018-01-26 |
| HK1233301B true HK1233301B (en) | 2021-03-05 |
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