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CN102816754A - Extraction method for hepatitis B virus nucleic acid - Google Patents

Extraction method for hepatitis B virus nucleic acid Download PDF

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Publication number
CN102816754A
CN102816754A CN2012102457313A CN201210245731A CN102816754A CN 102816754 A CN102816754 A CN 102816754A CN 2012102457313 A CN2012102457313 A CN 2012102457313A CN 201210245731 A CN201210245731 A CN 201210245731A CN 102816754 A CN102816754 A CN 102816754A
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hepatitis
magnetic bead
virus
nucleic acid
damping fluid
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CN2012102457313A
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CN102816754B (en
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不公告发明人
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Beijing Leadman Biochemistry Co Ltd
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Beijing Leadman Biochemistry Co Ltd
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Abstract

The invention discloses an extraction method for hepatitis B virus nucleic acid. According to the method, activated magnetic beads are coupled with specific antibodies to hepatitis B viruses so as to allow the coupled magnetic beads to specifically adsorb hepatitis B virus particles in serum containing the hepatitis B virus particles, then a simple buffer solution is used to remove needless impurities, and finally a virus lysis solution is added for lysis of virus cells so as to obtain the hepatitis B virus nucleic acid. Because of the introduction of the magnetic beads, automation becomes simpler, and high specific reaction of antigen-antibodies enables shorter extraction time and strong specificity to be obtained. Reagents used in the method are simple and easily available.

Description

Extract the method for hepatitis B virus nucleic acid
Technical field
The present invention relates to technical field of molecular biology, particularly relate to a kind of method of from serum, extracting hepatitis B virus nucleic acid.
Background technology
Hepatitis B virus (Hepatitis B virus) is called for short hepatitis B virus (HBV).Be a kind of dna virus, belong to Hepadnaviridae (hepadnavividae).Root so far as is known, HBV just only has susceptibility to people and orangutan, initiation hepatitis B disease.Up to the present, according to some relatively more authoritative statisticses, should there be hepatitis B virus (HBV) the infected 1.2 hundred million in China, accounts for 9.09% of China's total population basically, wherein has 1/4 to be the chronic viral hepatitis B patient, approximately is 30,000,000.
The test kit that detects to hepatitis B nucleic acid in the prior art is very many, and the process for extracting of its amplifying nucleic acid is also very many, for example: boiling method, post extraction method, paramagnetic particle method etc.Equal existing problems in above-mentioned these process for extracting, wherein boiling method is easier but impurity that introduce is too much, and can not realize robotization; Post extraction method extraction step is more, though purity is very high, robotization realizes having any problem; Paramagnetic particle method realizes that robotization is very simple, but agents useful for same is expensive.
Summary of the invention
In view of this, the objective of the invention is to propose a kind of method of extracting hepatitis B virus nucleic acid, so that it is process for extracting both can be realized robotization, simple and feasible again.
Based on above-mentioned purpose, the method for extraction hepatitis B virus nucleic acid provided by the invention may further comprise the steps:
(1) activation magnetic bead: adopt acvator activation magnetic bead, and with the magnetic bead after the damping fluid washing activation;
(2) antibody coupling: with the specific antibody coupling of activatory magnetic bead and hepatitis B virus, and with the magnetic bead after the damping fluid washing coupling; Add cancellation liquid,, and wash with damping fluid with the magnetic bead mixing after the coupling; After the washing, magnetic bead is resuspended in the damping fluid the last time, places 2~8 ℃ to preserve down;
(3) specificity combines: the magnetic bead after the coupling is mixed with serum and shakes mixing, make said magnetic bead and hepatitis B virus particle in the serum carry out specificity and combine; After effect for some time, said magnetic bead is washed the enrichment and the removal of impurity with phosphate buffered saline buffer; Add lysate lytic virus cell, make hepatitis B virus nucleic acid be discharged in the solution; Said solution is boiled, get supernatant.
Alternatively, said acvator is 1-ethyl-3-(3-dimethyl aminopropyl) carbodiimide.
Alternatively, said lysate is the solution that contains tensio-active agent.
Used damping fluid is 2-(N-morpholine) ethyl sulfonic acid damping fluid when washing in said step (1) and (2) alternatively.
Alternatively, said method is applied to the direct detection of clinical sample.
Saidly can find out from top; The method of extraction hepatitis B virus nucleic acid provided by the invention is through the specific antibody coupling with activatory magnetic bead and hepatitis B virus; Make magnetic bead after coupling viral adsorption particle specifically in having the serum of hepatitis B virus particles; Can redundant impurities be removed with simple damping fluid, add employing virus cracking liquid afterwards with the virocyte cracking, thereby obtain viral nucleic acid.Because the introducing of magnetic bead can make robotization become simply, the reaction of the high specific of antigen-antibody makes extraction time become shorter, high specificity; Used reagent is fairly simple to be easy to get.
Embodiment
For making the object of the invention, technical scheme and advantage clearer, below in conjunction with specific embodiment, to further explain of the present invention.
The principle of work of marked by magnetic bead antibody is: the carboxyl of carboxyl magnetic bead surfaces through the acvator activation after can with antibody coupling.
The principle of work of antigen antibody reaction is: antigen can specificity combine to be based on antigenic determinant (epi-position) and intermolecular complementary structure property of antibody hypervariable region and affinity with antibody.This specific character is to be determined by antigen, antibody molecule sterie configuration.Except that both molecular configuration height complementations, epitope must contact with the antibody hypervariable region closely, and enough bonding forces are just arranged.Antigen antibody reaction can be divided into two stages: the fs is antigen and antibody generation specificity bonded stage, and this elementary reaction is fast, only needs several seconds to several minutes, but visible reaction do not occur; Subordinate phase is visible step of reaction; This stage immune complex is under proper temperature, pH, ionogen and complement influence; Macroscopic reactions such as deposition, aggegation, cytolysis, complement combination mediation occur, this elementary reaction is slow, often needs several minutes to several hours.In serological reaction, more than two stages often can not be strict separately, often receive the influence of reaction conditions (like temperature, pH, ionogen, antigen-antibody ratio etc.).
Therefore, the present invention is based on above-mentioned two kinds of experimental principles, propose a kind of method of extracting hepatitis B virus nucleic acid, said method comprising the steps of:
(1) activation magnetic bead: adopt acvator activation magnetic bead, and with the magnetic bead after the damping fluid washing activation;
(2) antibody coupling: with the specific antibody coupling of activatory magnetic bead and hepatitis B virus, and with the magnetic bead after the damping fluid washing coupling; Add cancellation liquid,, and wash with damping fluid with the magnetic bead mixing after the coupling; After the washing, magnetic bead is resuspended in the damping fluid the last time, places 2~8 ℃ to preserve down;
(3) specificity combines: the magnetic bead after the coupling is mixed with serum and shakes mixing, make said magnetic bead and hepatitis B virus particle in the serum carry out specificity and combine; After effect for some time, said magnetic bead is washed the enrichment and the removal of impurity with phosphate buffered saline buffer; Add lysate lytic virus cell, make hepatitis B virus nucleic acid be discharged in the solution; Said solution is boiled, get supernatant.
As one embodiment of the present of invention, used experiment material and the device as follows:
BioMagPlus carboxyl magnetic bead, 2.5mL, 1.5 μ m, 20mg/mL;
1-ethyl-3-(3-dimethyl aminopropyl) carbodiimide (EDAC), 0.10g;
15mL tip centrifuge tube;
The magnetic separator frame;
0.05M L-one water morpholino b acid buffered soln (MES damping fluid, pH 5.2), 2 * 175mL;
Cancellation liquid (1M Glycine, pH 8.0), 25mL;
Phosphate buffered saline buffer (PBS damping fluid), 125mL.
Wherein, PBS damping fluid: 8g NaCl, 0.2g KCl, 1.44g Na 2HPO 4And 0.24gKH 2PO 4, be dissolved in the 800ml zero(ppm) water, with the pH value to 7.4 of HCl regulator solution, adding distil water is settled to 1L again; Be mixed with the PBS damping fluid of 0.1%Tween 20 at last.
Lysate: 0.1mol/L Tris-HCl, (pH 8.0), 0.1%TritonX-100,0.05%Tween20,1mg/ml Proteinase K, 50mmol/L KCl.
The concrete operations step of said extraction hepatitis B virus nucleic acid method is following:
One, the coupling of magnetic bead and antibody
(1), activation
1, pipette in BioMagPlus carboxyl magnetic bead to the 15mL tip centrifuge tube of 0.5mL (10mg), and be placed on the magnetic separator frame up to supernatant become fully thorough clearly after, carefully move with suction pipe and to abandon supernatant.
2, add the washing of the abundant mixing of 5mL MES damping fluid, with centrifuge tube be placed on the magnetic separator frame up to supernatant become clear after, carefully move with suction pipe and to abandon supernatant.
3, repeating step is 2 three times; After the last washing, magnetic bead is resuspended in the 5mL MES damping fluid.
4, EDAC was placed room temperature 30 minutes from the refrigeration taking-up, accurately take by weighing required EDAC (for example, about 1.6mg EDAC/mg magnetic bead) adding and be equipped with in the centrifuge tube of magnetic bead.
5, thermal agitation shakes up.
6, under the room temperature, centrifuge tube is placed on the rotation mixing appearance priming reaction 30 minutes, in the reaction process, note not allowing the magnetic bead deposition to flock together.
7, with centrifuge tube be placed on the magnetic separator frame up to supernatant become clear after, carefully move with suction pipe and to abandon supernatant.
8, repeating step is 2 four times, obtains the activation magnetic bead.
(2), magnetic bead after the activation and antibody coupling
1, calculating needs the specific anti scale of construction of link coupled hepatitis B virus, and every mg activatory carboxyl magnetic bead can coupling 20~500ug antibody.
2, antibody is added in the 5mL MES damping fluid be mixed with the antibody liquid storage.
3, draw 50 μ L antibody liquid storages in 950 μ L MES damping fluids, be made into the antibody liquid of 1:20.
4, antibody liquid is joined in the centrifuge tube that the activation magnetic bead is housed, the thermal agitation mixing under the room temperature, places centrifuge tube on the rotation mixing appearance and to carry out linked reaction, about 16~24 hours of the time of said linked reaction.
5, with centrifuge tube be placed on the magnetic separator frame up to supernatant become clear after, carefully move with suction pipe and to abandon supernatant.
6, magnetic bead is in resuspended 5mL MES damping fluid, and vibration shakes up, with centrifuge tube be placed on the magnetic separator frame up to supernatant become clear after, carefully move with suction pipe and to abandon supernatant.
7, repeating step 6 once.
8, add 5mL cancellation liquid, vibration shakes up, and under the room temperature centrifuge tube is placed rotation mixing appearance last 30 minute.
9, with centrifuge tube be placed on the magnetic separator frame up to supernatant become clear after, carefully move with suction pipe and to abandon supernatant.
(3), the magnetic bead after washing and the storage coupling
1, in the solution of step (two) gained, add the 5ml damping fluid, and thermal agitation shakes up and washs, with centrifuge tube be placed on the magnetic separator frame up to supernatant become clear after, carefully move with suction pipe and to abandon supernatant.
2, repeating step is 1 three times.
3, after the last washing, magnetic bead is resuspended in the 2ml lavation buffer solution, this moment, the concentration of magnetic bead was about 5mg/mL.
4, place 2~8 ℃ to preserve down.
Wherein, should be noted that:
1, can not use during coupling and contain the amino (for example, tris (Tris)) or the damping fluid of carboxyl (for example acetate, Citrate trianion etc.).
2, the non-coupling adsorptive that produces in the time of can removing coupling through the washing after the coupling.
3, the time of prolongation vibration helps resuspended magnetic bead.
Two, the magnetic bead after the coupling combines and prepares nucleic acid with hepatitis B virus particle specificity in the serum.
1, magnetic bead is hanged, mix, draw 50 μ L magnetic beads and mix with 100 μ L test serums.
2, concussion mixing 30s places 5min, 2 times repeatedly.
3, be placed on the magnetic separator frame magnetic bead absorption 1min.
4, carefully supernatant is siphoned away, as far as possible wash clean.
5, with the PBS damping fluid of 200 μ L that magnetic bead is resuspended, it is even to be mixed.
6, repeating step 3, step 4.
7, repeating step 5, step 6 are twice.
8, add 50 μ L lysates, with the magnetic bead mixing.
9,100 ℃ are boiled 5min.
10, as on the magnetic separator frame, supernatant promptly can be used as template amplification; As need not, preserve down for-20 ℃.
Three, experimental design:
20 parts of serum samples that contain the hepatitis B virus of different concns of picking extract, and with commercial kit the serum before and after extracting are detected the viral nucleic acid number change before and after relatively extracting afterwards.
It is clinical that 20 parts of serum comes from, extract with the test kit of Shanghai section China, amplification quantitatively, test result is seen table 1.
The clinical serum HBV DNA of table 1 section China's kit measurement copy number
Sequence number HBV DNA quantitative values Sequence number HBV DNA quantitative values
1 3.77E+03 11 6.04E+07
2 3.61E+03 12 5.28E+07
3 6.25E+07 13 6.81E+03
[0077]?
4 6.48E+07 14 6.55E+03
5 1.70E+03 15 3.69E+06
6 2.65E+03 16 5.54E+06
7 1.20E+08 17 2.49E+05
8 1.68E+08 18 4.40E+04
9 1.70E+05 19 6.35E+04
10 2.11E+05 20 5.63E+05
Through after the step 2, the serum of crossing through nucleic acid extraction to be measured, and carried out coefficient correction according to the variation of sample volume, test result is seen table 2.
The clinical serum of table 2 section China's kit measurement (after paramagnetic particle method extracts) HBV DNA copy number.
Sequence number HBV DNA quantitative values Sequence number HBV DNA quantitative values
1 1.24E+03 11 1.03E+06
2 1.12E+03 12 4.33E+05
3 4.45E+05 13 1.21E+02
4 7.54E+05 14 1.39E+02
5 8.7E+01 15 4.88E+04
6 1.35E+03 16 3.24E+04
7 2.43E+06 17 1.23E+03
8 2.73E+06 18 2.03E+03
9 2.03E+03 19 3.23E+02
10 3.25E+03 20 3.22E+03
To directly measure with section China test kit with the nucleic acid that paramagnetic particle method extracts, test result is seen table 3.
The clinical serum HBV DNA of table 3 paramagnetic particle method extraction and determination copy number
Sequence number HBV DNA quantitative values Sequence number HBV DNA quantitative values
1 4.86E+03 11 1.34E+08
2 4.03E+03 12 7.49E+07
3 5.89E+07 13 2.05E+04
4 8.33E+07 14 1.86E+04
5 1.87E+03 15 4.54E+06
6 5.72E+03 16 5.67E+06
[0084]?
7 1.09E+08 17 5.26E+05
8 2.43E+08 18 5.34E+04
9 8.40E+05 19 7.65E+04
10 5.34E+05 20 6.66E+05
From above-mentioned three forms: we can draw to draw a conclusion:
Can find out that from the data of table 1 and table 2 recovery that paramagnetic particle method extracts wherein has three parts of organic efficiencies to hang down about 60% slightly, but all can detect smoothly more than 90%.
Can find out that from the data of table 1 and table 3 paramagnetic particle method extracts nucleic acid quality (comprising the removal of quantity and impurity), effect is better than business-like test kit.
Need to prove that the method for extraction hepatitis B virus nucleic acid provided by the invention can be applied to the direct detection of clinical sample.
The method of extraction hepatitis B virus nucleic acid provided by the invention is through the specific antibody coupling with activatory magnetic bead and hepatitis B virus; Make magnetic bead after coupling viral adsorption particle specifically in having the serum of hepatitis B virus particles; Can redundant impurities be removed with simple damping fluid; Add employing virus cracking liquid afterwards with the virocyte cracking, thereby obtain viral nucleic acid.
Because the introducing of magnetic bead can make robotization become simply, the reaction of the high specific of antigen-antibody makes extraction time become shorter, high specificity; Used reagent is fairly simple to be easy to get.
The those of ordinary skill in affiliated field is to be understood that: the above is merely specific embodiment of the present invention; Be not limited to the present invention; All within spirit of the present invention and principle, any modification of being made, be equal to replacement, improvement etc., all should be included within protection scope of the present invention.

Claims (5)

1. a method of extracting hepatitis B virus nucleic acid is characterized in that, said method comprising the steps of:
(1) activation magnetic bead: adopt acvator activation magnetic bead, and with the magnetic bead after the damping fluid washing activation;
(2) antibody coupling: with the specific antibody coupling of activatory magnetic bead and hepatitis B virus, and with the magnetic bead after the damping fluid washing coupling; Add cancellation liquid,, and wash with damping fluid with the magnetic bead mixing after the coupling; After the washing, magnetic bead is resuspended in the damping fluid the last time, places 2 ~ 8 ℃ to preserve down;
(3) specificity combines: the magnetic bead after the coupling is mixed with serum and shakes mixing, make said magnetic bead and hepatitis B virus particle in the serum carry out specificity and combine; After effect for some time, said magnetic bead is washed the enrichment and the removal of impurity with phosphate buffered saline buffer; Add lysate lytic virus cell, make hepatitis B virus nucleic acid be discharged in the solution; Said solution is boiled, get supernatant.
2. the method for extraction hepatitis B virus nucleic acid according to claim 1 is characterized in that, said acvator is 1-ethyl-3-(3-dimethyl aminopropyl) carbodiimide.
3. the method for extraction hepatitis B virus nucleic acid according to claim 1 is characterized in that, said lysate is the solution that contains tensio-active agent.
4. the method for extraction hepatitis B virus nucleic acid according to claim 1 is characterized in that, used damping fluid is 2-(N-morpholine) ethyl sulfonic acid damping fluid when washing in said step (1) and (2).
5. according to the method for any described extraction hepatitis B virus nucleic acid of claim 1 ~ 4, it is characterized in that said method is applied to the direct detection of clinical sample.
CN201210245731.3A 2012-07-16 2012-07-16 Extraction method for hepatitis B virus nucleic acid Active CN102816754B (en)

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Cited By (5)

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CN103149350A (en) * 2013-01-23 2013-06-12 苏州浩欧博生物医药有限公司 Method for coupling of nanometer magnetic particles and immune body
EP3480601A4 (en) * 2016-06-30 2020-03-18 Shenzhen Yhlo Biotech Co., Ltd INHIBIN B CHEMOLUMINESCENT IMMUNOASSAY KIT AND PREPARATION METHOD THEREOF
CN111187769A (en) * 2020-04-01 2020-05-22 常州天地人和生物科技有限公司 Method for one-step rapid and efficient extraction of viral nucleic acid
CN113322302A (en) * 2021-06-02 2021-08-31 重庆医科大学 Immunocapture molecular detection method for HBV complete virus particles
CN115786326A (en) * 2022-11-04 2023-03-14 重庆医科大学 Kit for extracting viral nucleic acid and method for extracting complete viral particle nucleic acid using the kit

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Cited By (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN103149350A (en) * 2013-01-23 2013-06-12 苏州浩欧博生物医药有限公司 Method for coupling of nanometer magnetic particles and immune body
EP3480601A4 (en) * 2016-06-30 2020-03-18 Shenzhen Yhlo Biotech Co., Ltd INHIBIN B CHEMOLUMINESCENT IMMUNOASSAY KIT AND PREPARATION METHOD THEREOF
CN111187769A (en) * 2020-04-01 2020-05-22 常州天地人和生物科技有限公司 Method for one-step rapid and efficient extraction of viral nucleic acid
CN111187769B (en) * 2020-04-01 2024-03-08 常州天地人和生物科技有限公司 Method for rapidly and efficiently extracting viral nucleic acid in one step
CN113322302A (en) * 2021-06-02 2021-08-31 重庆医科大学 Immunocapture molecular detection method for HBV complete virus particles
CN113322302B (en) * 2021-06-02 2023-08-11 重庆医科大学 An immunocapture molecular detection method for intact HBV virus particles
CN115786326A (en) * 2022-11-04 2023-03-14 重庆医科大学 Kit for extracting viral nucleic acid and method for extracting complete viral particle nucleic acid using the kit
CN115786326B (en) * 2022-11-04 2023-10-03 重庆医科大学 A viral nucleic acid extraction kit and a method for extracting intact viral particle nucleic acid using the kit

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