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This Protocol describes an automated approach for optical labeling of therapeutic monoclonal antibodies by using disposable commercial components, yielding a cGMP-grade product at reduced cost and without the need for a dedicated clean room facility.
This protocol uses Reprogrammable Adenosine Deaminase Acting on RNA (ADAR) Sensors (RADARS) to robustly sense RNA transcripts inside eukaryotic cells, enabling detection of changes in gene expression or targeting and perturbation of specific mammalian cell types and states.
This is a protocol for the generation of pediatric patient-derived ependymoma and medulloblastoma tumoroids from surgically resected patient tumor tissues or xenografts, including their use in drug screening and in downstream analyses.
This step-by-step protocol describes a versatile approach for assessing genome-wide off-target activity of diverse genome editors by tracking replication protein A—a key protein that binds single-stranded DNA intermediates.
Our authors are invited to write blog posts that describe how they conceived and developed their protocols, prior to publication at Nature Protocols. These stories are published on a community website for researchers who are interested in techniques and methods.
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The trRosettaRNA server is a web-based platform for automated and accurate RNA 3D structure prediction using deep learning. This protocol also describes how to use the standalone package locally, which is beneficial for large-scale applications.
This Protocol describes an automated approach for optical labeling of therapeutic monoclonal antibodies by using disposable commercial components, yielding a cGMP-grade product at reduced cost and without the need for a dedicated clean room facility.
This protocol uses Reprogrammable Adenosine Deaminase Acting on RNA (ADAR) Sensors (RADARS) to robustly sense RNA transcripts inside eukaryotic cells, enabling detection of changes in gene expression or targeting and perturbation of specific mammalian cell types and states.
This Protocol describes the transcriptome-wide labeling of RNAs in a particular subcellular compartment using proximity biotinylation by localized APEX2 enzyme and subsequent enrichment and sequencing of these transcripts.
This is a protocol for the generation of pediatric patient-derived ependymoma and medulloblastoma tumoroids from surgically resected patient tumor tissues or xenografts, including their use in drug screening and in downstream analyses.
Electrocatalytic reactions can be used to upcycle nitrate/nitrite to ammonia, NH2OH, N2H4 and organonitrogen compounds. This protocol describes catalyst screening and reaction optimization via in situ and operando analysis.
This step-by-step protocol describes a versatile approach for assessing genome-wide off-target activity of diverse genome editors by tracking replication protein A—a key protein that binds single-stranded DNA intermediates.
This is a protocol for the preparation and characterization of the activatable BTPE-NO2@F127 nanoprobe and its applications in multispectral optoacoustic and near-infrared region II fluorescence dual-mode imaging of liver injury models in mice.
This protocol provides guidelines for using fluorescent RNAs, entities consisting of an RNA aptamer bound to its cognate fluorogenic dye, for live imaging of the localization and dynamics of different RNA species in bacteria and mammalian cells.
The research unit of Sport and Health Sciences, Department of Sports Science and Clinical Biomechanics, invites applications for a part-time position (20%) as associate professor in Sport for Fitness and Health in Children and Youth