Activity for Girish Chavan
-
Girish Chavan committed [r2411]
Fixed bug when saving queries that contained Age <n query constraint. The < caused an xml exception when saved without a CDATA wrap. Updated the code to wrap all value domains with CDATA when saving within a query.
-
Hi Kevin, could you share the wrapper.log from when you ran 5.7 and let me know if there are any errors in there.
-
Changed detection of existing version of installation from the tomcatPub caties.jar to configuration caties.jar. as not installations might have a tomcatPub in the installation folder.
-
I see the problem. It was assuming tomcatPub to be present and hence it could not get a version of your existing installation on the private server.
-
Can you try running the installer on the private server again to see if the error still occurs. In any case, it is a non critical error in your case as you have separate private and public servers. Your upgrade should be complete.
-
Tagging v5.7 Release.
-
Tagging v5.7 Release.
-
Fixing bug where saving caseset file to path which has spaces causes issues. Fixed some issues with study creation dialog errors not prompting the user. Added autofill for city and state and country when creating new user. It copies that data from the current users address.
-
Fixed bug#226 changes to the query do not show up
-
changes to the query do not show up
-
Fix checked in.
-
Added opensaml1.1.jar to caTIES project dependencies. We are doing this so that it gets included in the installer jar export, as the installer run config depends on it and Eclipse does not include it if it is not also found to be in the project dependencies.
-
added coder resourch path to list of variables updated. This fixed an issue with a new installation not having the correct path. in UserServicesDispatcher.properties
-
isPatientAttrbute flag added to comm. and propogated through Cloner to enable client-server transfer of this flag.
-
Are you accessing TIES from the RPCI network? You need to be behind the RPCI firewall to be able to access the PHI data as a Honest Broker.
-
-
-
Better error handling when having parsing exceptions. Previously caused entire document to be marked as not indexed, now it indexes all other fields for the document.
-
Fixed NPE when columnTooltip is null
-
Added ability or FileImporterBase to handle nested subdirs.
-
Allow tagging of Patients from UI
-
Try running the Data Cleanup Tool again. It should now delete the DELETING documents. Make sure you are not running in Analyze Only mode.
-
Adding MARSImporter
-
when saving case set files, spaces are not handled correctly in filenames
-
Fixed in v5.7
-
-
Re-factored HL7ImportPipeController to use the same base class as DelimitedPipeController. Created a new class called NonSectionedHL7Importer which handles HL7 files which do not have separate OBX per section. Better code all around to make debugging easier.
-
-
Made all the pipeline run configs to use the caTIES_VM.properties file for configuration.
-
Added some helpful comments
-
Created a more generically named Class of the RPCIHL7Importer. The RPCI HL7 importer now just extends this new class. This is to maintain backward compatibility for RPCI and others using the RPCI class.
-
-
Fixed bug where invalid pattern was being used.
-
Renamed variable to be more meaningful
-
Disabled loading of identified data if the report does not belong to current user's institution.
-
Ability to filter by caseset ID
-
Removing dead code
-
Added ability to search with study or user ID for administrators
-
Refactored code to create CasesetCreationListener to promote code reuse. Added option to create a new caseset from the Casesets Tab.
-
Updated Installer and Updater for v5.7
-
Added build date and time to window title.
-
modified autofill for cfg file to replace existing input file extension rather than just appending cfg extension to inputfile name
-
Deprecated the StudyID in Dataset and added StudyIDList member variable. This is to support enabling access to more than one study rather than just one study. The StudyIDList will contain a list of IDs separated by the _SEPARATOR_ string.
-
fixed bug where PAVs on public side may not get correctly cleaned up.
-
removing typecast warnings all over.
-
fixed issue preventing the activity log to load.
-
Check the log files for TIES JMSTiesPipeController and JMSIndexPipeController. Do they indicate any errors?
-
fixed issue where order item status showed orderset status options
-
Fixed bug where identified data was not being exported.
-
Fixed bug where study specific datasets loaded from the backend would not show up for export.
-
-
Looking at the numbers, it seems the JMS Database Bridge services are not running.. You can install them by running the TIES Installer again,. selecting Install Pipelines Only option and then Selecting "JMS Database Bridge Services" on the next screen. Once installed these Windows services should appear in your Services panel: 1. TIES Coder Producer 2. TIES Coder Consumer 3. TIES Indexer Producer 4. TIES Indexer Consumer The DeID installation directory parameter is only used if the de-identifier...
-
Merged in GroupedStructuredData branch. Version no. changed to 5.7
-
The DeidPipeController moves reports from TIES PRIVATE to TIES PUBLIC. Run the Control Panel and check the status of processing under the Database Config option. Let me know what is listed under the identified and deidentified processing status. http://ties.dbmi.pitt.edu/configuration-and-maintenance/
-
-
-
Also, the JMSIndexPipeController needs to run to process the INDEXING queue. Now, you need to also make sure that you turn off the DBTiesPipeController and DBIndexPipeController which are installed by default when you install TIES node. In order to install the JMS versions of TIESPipeController and IndexPipeController you need to run the installer and choose install pipelines only option. You can then select the pipelines from the list.
-
The JMSTiespipecontroller needs to be running. Maybe check the logs for it if it is already installed
-
OK, just uploaded a new client build. Can you try once more. Thanks, and apologies.
-
Looking into it now. This is a bug in the latest release. Will fix it in a bit.
-
Downloading PHI from a case set after opening it in the new view
-
could not replicate this. Is this still an issue?
-
fixed. subject line now will be different if there are non password related account updates.
-
New account email says Password Reset
-
force addition of PI before any other users can be added to study
-
Completed. Additionally it also forces assignment of HB or Tissue studies and only allows addition of Preliminary User role for Aggregate data studies.
-
Added. Will be available in v5.652
-
copy/move multiple selected items across case sets
-
Highlighting report sections
-
Added option to download query results as excel...
-
Ability to export query results data
-
Added to v5.652
-
Ability to export query results data
-
autofill config file from input file in structured data loader utility
-
TCGA Node duplication at RPCI
-
this should be fixed now. there was a duplication in the approval.
-
-
-
switching to using shbhttpclient jar
-
-
Sorry, I meant the DelimitedFileImporter. The ActiveMQ is only required if using...
-
The production databases need to be loaded first. Did you run the DelimitedPipeController?...
-
Fix broken row filtering for data view and add ...
-
Added StudyID to StudyInformationView.
-
Patient and DocumentAttributeValueFetcher now c...
-
-
This has now been fixed on our end. the private IP was still set to the older IP...
-
This seems to be a server issue. We will know more after we look at the server logs....
-
-
-
-
-
-
-
-
-
-
-
-
1 >