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muda.pl was renamed to MANTI.pl with v3.7, project development can be tracked on the MANTI project page on sourceforge.net. Old versions remain here for archival purposes.
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muda.pl is an evaluation script (written in Perl) without great dependencies.
It congregates information from 4 different MaxQuant output files into a master file suitable explicitly for protein neo-termini analyses. The central anchor for the data congregation is the modificationSpecificPeptides.txt file - additional data is inferred from different other source files from the MaxQuant txt folder but the starting point for the data assembly is solely the modificationSpecificPeptides.txt file. Maybe also useful for normal proteomics purposes but this script is heavily optimized for protein neo-termini identification and validation.
For a more thorough explanation of script parameters and evaluation strategy, please consult the extensive manual PDF.
Features
- MaxQuant data evaluation
- Protein-Termini identification & validation
- UniProt data annotation & assembly
- Re-mapping of identified Termini to Isoforms
- Limma, LOCALIZER & TopFINDer integration
- Well documented
Project Samples
