ALEXA-Seq

ALEXA-Seq is a method for using massively parallel paired-end transcriptome sequencing for 'alternative expression analysis'.

Features

Alternative expression analysis
WTSS/RNA-Seq library quality assessment
Gene expression analysis
Novel transcript discovery
Visualization of sequence feature expression, differential expression and alternative expression

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow ALEXA-Seq

ALEXA-Seq Web Site

User Reviews

Be the first to post a review of ALEXA-Seq!

Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

User Interface

Console/Terminal

Programming Language

Perl, S/R, Unix Shell

Database Environment

Berkeley/Sleepycat/Gdbm (DBM), MySQL, Perl DBI/DBD

Related Categories

Unix Shell Bio-Informatics Software, Perl Bio-Informatics Software, S/R Bio-Informatics Software

Registered

2010-04-02

Similar Business Software

BioTuring Browser

Explore hundreds of curated single-cell transcriptome datasets, along with your own data, through interactive visualizations and analytics. The software also supports multimodal omics, CITE-seq, TCR-seq, and spatial transcriptomic. Interactively explore the world's largest single-cell expression...

See Software
OmicsBox

OmicsBox is a leading bioinformatics solution that offers end-to-end data analysis of genomes, transcriptomes, metagenomes, and genetic variation studies. The application is used by top private and public research institutions worldwide and allows researchers to easily process large and complex...

See Software
MEGA

MEGA (Molecular Evolutionary Genetics Analysis) is a powerful and user-friendly software suite designed for analyzing DNA and protein sequence data from species and populations. It facilitates both automatic and manual sequence alignment, phylogenetic tree inference, and evolutionary hypothesis...

See Software
Geneious

Geneious Prime makes bioinformatics accessible by transforming raw data into visualizations that make sequence analysis intuitive and user-friendly. Simple sequence assembly and easy editing of contigs. Automatic annotation for gene prediction, motifs, translation, and variant calling. Genotype...

See Software
Illumina DRAGEN Secondary Analysis

The Illumina DRAGEN Secondary Analysis provides accurate, comprehensive, and efficient analysis of next-generation sequencing data. Graph reference genome and machine learning driving unprecedented accuracy. Provides ultra-efficient workflow; can fully process a 34x whole human genome in ~30...

See Software
QIAGEN CLC Genomics Workbench

QIAGEN CLC Genomics Workbench is a powerful solution that works for everyone, no matter the workflow. Cutting-edge technology and unique features and algorithms widely used by scientific leaders in industry and academia make it easy to overcome challenges associated with data analysis....

See Software