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Revision: 9431
          http://sbml.svn.sourceforge.net/sbml/?rev=9431&view=rev
Author:   sarahkeating
Date:     2009-03-30 14:36:09 +0000 (Mon, 30 Mar 2009)

Log Message:
-----------
added functions setId/isSetId/getId and setName/isSetName/getName on SBase. 

These hide on casting necessary to use the functions that are now on the derived classes and thus allows the functions to be called from a SBase object.

NOTE: Since an SBase object is never created except as the base of a derived class this shouldnt cause a problem.

Modified Paths:
--------------
    branches/libsbml-4/src/sbml/SBase.cpp
    branches/libsbml-4/src/sbml/SBase.h

Modified: branches/libsbml-4/src/sbml/SBase.cpp
===================================================================

--- branches/libsbml-4/src/sbml/SBase.cpp	2009-03-27 09:26:47 UTC (rev 9430)
+++ branches/libsbml-4/src/sbml/SBase.cpp	2009-03-30 14:36:09 UTC (rev 9431)
@@ -42,6 +42,10 @@
 #include <sbml/ListOf.h>
 #include <sbml/SBase.h>
 
+#ifdef USE_LAYOUT
+ #include <sbml/layout/LineSegment.h>
+#endif
+
 /** @cond doxygen-ignored */
 
 using namespace std;
@@ -315,27 +319,249 @@
 }
 
 
-///*
-// * @return the id of this SBML object.
-// */
-//const string&
-//SBase::getId () const
-//{
-//  return mId;
-//}
-//
-//
-///*
-// * @return the name of this SBML object.
-// */
-//const string&
-//SBase::getName () const
-//{
-//  return (getLevel() == 1) ? mId : mName;
-//}
-//
-//
+/** @cond doxygen-libsbml-internal */
+
 /*
+ * NOTE: THIS IS FOR BACKWARD COMPATABILITY REASONS
+ *
+ * @return the id of this SBML object.
+ */
+const string&
+SBase::getId () const
+{
+  SBMLTypeCode_t type = this->getTypeCode();
+
+  switch(type)
+  {
+  case SBML_COMPARTMENT:
+    return static_cast <const Compartment *> (this)->getId();
+    break;
+
+  case SBML_COMPARTMENT_TYPE:
+    return static_cast <const CompartmentType *> (this)->getId();
+    break;
+
+  case SBML_EVENT:
+    return static_cast <const Event *> (this)->getId();
+    break;
+
+  case SBML_EVENT_ASSIGNMENT:
+    return static_cast <const EventAssignment *> (this)->getVariable();
+    break;
+
+  case SBML_FUNCTION_DEFINITION:
+    return static_cast <const FunctionDefinition *> (this)->getId();
+    break;
+
+  case SBML_INITIAL_ASSIGNMENT:
+    return static_cast <const InitialAssignment *> (this)->getSymbol();
+    break;
+
+  case SBML_MODEL:
+    return static_cast <const Model *> (this)->getId();
+    break;
+
+  case SBML_PARAMETER:
+    return static_cast <const Parameter *> (this)->getId();
+    break;
+
+  case SBML_REACTION:
+    return static_cast <const Reaction *> (this)->getId();
+    break;
+
+  case SBML_SPECIES:
+    return static_cast <const Species *> (this)->getId();
+    break;
+
+  case SBML_SPECIES_REFERENCE:
+    return static_cast <const SpeciesReference *> (this)->getId();
+    break;
+
+  case SBML_SPECIES_TYPE:
+    return static_cast <const SpeciesType *> (this)->getId();
+    break;
+
+  case SBML_MODIFIER_SPECIES_REFERENCE:
+    return static_cast <const ModifierSpeciesReference *> (this)->getId();
+    break;
+
+  case SBML_UNIT_DEFINITION:
+    return static_cast <const UnitDefinition *> (this)->getId();
+    break;
+
+  case SBML_ASSIGNMENT_RULE:
+    return static_cast <const AssignmentRule *> (this)->getVariable();
+    break;
+
+  case SBML_RATE_RULE:
+    return static_cast <const RateRule *> (this)->getVariable();
+    break;
+
+#ifdef USE_LAYOUT
+
+  case SBML_LAYOUT_BOUNDINGBOX:
+    return static_cast <const BoundingBox *> (this)->getId();
+    break;
+
+  case SBML_LAYOUT_GRAPHICALOBJECT:
+    return static_cast <const GraphicalObject *> (this)->getId();
+    break;
+
+  case SBML_LAYOUT_LAYOUT:
+    return static_cast <const Layout *> (this)->getId();
+    break;
+
+  case SBML_LAYOUT_LINESEGMENT:
+    return static_cast <const LineSegment *> (this)->getId();
+    break;
+#endif  /* USE_LAYOUT */
+
+  default:
+    return "";
+    break;
+  }
+
+  return "";
+}
+
+
+
+/*
+ * NOTE: THIS IS FOR BACKWARD COMPATABILITY REASONS
+ *
+ * @return the name of this SBML object.
+ */
+const string&
+SBase::getName () const
+{
+  SBMLTypeCode_t type = this->getTypeCode();
+
+  if (getLevel() == 1)
+  {
+    switch(type)
+    {
+      case SBML_COMPARTMENT:
+        return static_cast <const Compartment *> (this)->getId();
+        break;
+
+      case SBML_MODEL:
+        return static_cast <const Model *> (this)->getId();
+        break;
+
+      case SBML_PARAMETER:
+        return static_cast <const Parameter *> (this)->getId();
+        break;
+
+      case SBML_REACTION:
+        return static_cast <const Reaction *> (this)->getId();
+        break;
+
+      case SBML_SPECIES:
+        return static_cast <const Species *> (this)->getId();
+        break;
+
+      case SBML_UNIT_DEFINITION:
+        return static_cast <const UnitDefinition *> (this)->getId();
+        break;
+
+      case SBML_ASSIGNMENT_RULE:
+        return static_cast <const AssignmentRule *> (this)->getVariable();
+        break;
+
+      case SBML_RATE_RULE:
+        return static_cast <const RateRule *> (this)->getVariable();
+        break;
+
+    #ifdef USE_LAYOUT
+
+      case SBML_LAYOUT_BOUNDINGBOX:
+        return static_cast <const BoundingBox *> (this)->getId();
+        break;
+
+      case SBML_LAYOUT_GRAPHICALOBJECT:
+        return static_cast <const GraphicalObject *> (this)->getId();
+        break;
+
+      case SBML_LAYOUT_LAYOUT:
+        return static_cast <const Layout *> (this)->getId();
+        break;
+
+      case SBML_LAYOUT_LINESEGMENT:
+        return static_cast <const LineSegment *> (this)->getId();
+        break;
+    #endif  /* USE_LAYOUT */
+
+      default:
+        return "";
+        break;
+    }
+
+    return "";
+  }
+  else
+  {
+    switch(type)
+    {
+    case SBML_COMPARTMENT:
+      return static_cast <const Compartment *> (this)->getName();
+      break;
+
+    case SBML_COMPARTMENT_TYPE:
+      return static_cast <const CompartmentType *> (this)->getName();
+      break;
+
+    case SBML_EVENT:
+      return static_cast <const Event *> (this)->getName();
+      break;
+
+    case SBML_FUNCTION_DEFINITION:
+      return static_cast <const FunctionDefinition *> (this)->getName();
+      break;
+
+    case SBML_MODEL:
+      return static_cast <const Model *> (this)->getName();
+      break;
+
+    case SBML_PARAMETER:
+      return static_cast <const Parameter *> (this)->getName();
+      break;
+
+    case SBML_REACTION:
+      return static_cast <const Reaction *> (this)->getName();
+      break;
+
+    case SBML_SPECIES:
+      return static_cast <const Species *> (this)->getName();
+      break;
+
+    case SBML_SPECIES_REFERENCE:
+      return static_cast <const SpeciesReference *> (this)->getName();
+      break;
+
+    case SBML_SPECIES_TYPE:
+      return static_cast <const SpeciesType *> (this)->getName();
+      break;
+
+    case SBML_MODIFIER_SPECIES_REFERENCE:
+      return static_cast <const ModifierSpeciesReference *> (this)->getName();
+      break;
+
+    case SBML_UNIT_DEFINITION:
+      return static_cast <const UnitDefinition *> (this)->getName();
+      break;
+
+    default:
+      return "";
+      break;
+    }
+
+    return "";
+  }
+}
+
+/** @endcond doxygen-libsbml-internal */
+
+/*
  * @return the notes of this SBML object.
  */
 XMLNode*
@@ -527,30 +753,38 @@
 }
 
 
-///*
-// * @return true if the id of this SBML object has been set, false
-// * otherwise.
-// */
-//bool
-//SBase::isSetId () const
-//{
-//  return (mId.empty() == false);
-//}
-//
-//
-///*
-// * @return true if the name of this SBML object has been set, false
-// * otherwise.
-// */
-//bool
-//SBase::isSetName () const
-//{
-//  return (getLevel() == 1) ? (mId.empty() == false) : 
-//                            (mName.empty() == false);
-//}
-//
-//
+/** @cond doxygen-libsbml-internal */
+
 /*
+ * NOTE: THIS IS FOR BACKWARD COMPATABILITY REASONS
+ *
+ * @return true if the id of this SBML object has been set, false
+ * otherwise.
+ */
+bool
+SBase::isSetId () const
+{
+  return (getId().empty() == false);
+}
+
+
+/*
+ * NOTE: THIS IS FOR BACKWARD COMPATABILITY REASONS
+ *
+ * @return true if the name of this SBML object has been set, false
+ * otherwise.
+ */
+bool
+SBase::isSetName () const
+{
+  return (getName().empty() == false);
+}
+
+
+/** @endcond doxygen-libsbml-internal */
+
+
+/*
  * @return true if the notes of this SBML object has been set, false
  * otherwise.
  */
@@ -611,63 +845,265 @@
 }
 
 
-///*
-// * Sets the id of this SBML object to a copy of sid.
-// */
-//int
-//SBase::setId (const std::string& sid)
-//{
-//  /* since the setId function has been used as an
-//   * alias for setName we cant require it to only
-//   * be used on a L2 model
-//   */
-///*  if (getLevel() == 1)
-//  {
-//    return LIBSBML_UNEXPECTED_ATTRIBUTE;
-//  }
-//*/
-//  if (!(SBase::hasCorrectSBMLSIdSyntax(sid)))
-//  {
-//    return LIBSBML_INVALID_ATTRIBUTE_VALUE;
-//  }
-//  else
-//  {
-//    mId = sid;
-//    return LIBSBML_OPERATION_SUCCESS;
-//  }
-//}
-//
-//
-///*
-// * Sets the name of this SBML object to a copy of name.
-// */
-//int
-//SBase::setName (const std::string& name)
-//{
-//  /* if this is setting an L2 name the type is string
-//   * whereas if it is setting an L1 name its type is SId
-//   */
-//  if (getLevel() == 1)
-//  {
-//    if (!(SBase::hasCorrectSBMLSIdSyntax(name)))
-//    {
-//      return LIBSBML_INVALID_ATTRIBUTE_VALUE;
-//    }
-//    else
-//    {
-//      mId = name;
-//      return LIBSBML_OPERATION_SUCCESS;
-//    }
-//  }
-//  else
-//  {
-//    mName = name;
-//    return LIBSBML_OPERATION_SUCCESS;
-//  }
-//}
-//
-//
+/** @cond doxygen-libsbml-internal */
+
 /*
+ * NOTE: THIS IS FOR BACKWARD COMPATABILITY REASONS
+ *
+ * Sets the id of this SBML object to a copy of sid.
+ */
+int
+SBase::setId (const std::string& sid)
+{
+  SBMLTypeCode_t type = this->getTypeCode();
+
+  switch(type)
+  {
+  case SBML_COMPARTMENT:
+    return static_cast <Compartment *> (this)->setId(sid);
+    break;
+
+  case SBML_COMPARTMENT_TYPE:
+    return static_cast <CompartmentType *> (this)->setId(sid);
+    break;
+
+  case SBML_EVENT:
+    return static_cast <Event *> (this)->setId(sid);
+    break;
+
+  case SBML_EVENT_ASSIGNMENT:
+    return static_cast <EventAssignment *> (this)->setVariable(sid);
+    break;
+
+  case SBML_FUNCTION_DEFINITION:
+    return static_cast <FunctionDefinition *> (this)->setId(sid);
+    break;
+
+  case SBML_INITIAL_ASSIGNMENT:
+    return static_cast <InitialAssignment *> (this)->setSymbol(sid);
+    break;
+
+  case SBML_MODEL:
+    return static_cast <Model *> (this)->setId(sid);
+    break;
+
+  case SBML_PARAMETER:
+    return static_cast <Parameter *> (this)->setId(sid);
+    break;
+
+  case SBML_REACTION:
+    return static_cast <Reaction *> (this)->setId(sid);
+    break;
+
+  case SBML_SPECIES:
+    return static_cast <Species *> (this)->setId(sid);
+    break;
+
+  case SBML_SPECIES_REFERENCE:
+    return static_cast <SpeciesReference *> (this)->setId(sid);
+    break;
+
+  case SBML_SPECIES_TYPE:
+    return static_cast <SpeciesType *> (this)->setId(sid);
+    break;
+
+  case SBML_MODIFIER_SPECIES_REFERENCE:
+    return static_cast <ModifierSpeciesReference *> (this)->setId(sid);
+    break;
+
+  case SBML_UNIT_DEFINITION:
+    return static_cast <UnitDefinition *> (this)->setId(sid);
+    break;
+
+  case SBML_ASSIGNMENT_RULE:
+    return static_cast <AssignmentRule *> (this)->setVariable(sid);
+    break;
+
+  case SBML_RATE_RULE:
+    return static_cast <RateRule *> (this)->setVariable(sid);
+    break;
+
+#ifdef USE_LAYOUT
+
+  case SBML_LAYOUT_BOUNDINGBOX:
+    static_cast <BoundingBox *> (this)->setId(sid);
+    return LIBSBML_OPERATION_SUCCESS;
+    break;
+
+  case SBML_LAYOUT_GRAPHICALOBJECT:
+    static_cast <GraphicalObject *> (this)->setId(sid);
+    return LIBSBML_OPERATION_SUCCESS;
+    break;
+
+  case SBML_LAYOUT_LAYOUT:
+    static_cast <Layout *> (this)->setId(sid);
+    return LIBSBML_OPERATION_SUCCESS;
+    break;
+
+  case SBML_LAYOUT_LINESEGMENT:
+    static_cast <LineSegment *> (this)->setId(sid);
+    return LIBSBML_OPERATION_SUCCESS;
+    break;
+#endif  /* USE_LAYOUT */
+
+  default:
+    return LIBSBML_UNEXPECTED_ATTRIBUTE;
+    break;
+  }
+}
+
+
+/*
+ * NOTE: THIS IS FOR BACKWARD COMPATABILITY REASONS
+ * Sets the name of this SBML object to a copy of name.
+ */
+int
+SBase::setName (const std::string& name)
+{
+  SBMLTypeCode_t type = this->getTypeCode();
+
+  /* if this is setting an L2 name the type is string
+   * whereas if it is setting an L1 name its type is SId
+   */
+  if (getLevel() == 1)
+  {
+    if (!(SBase::hasCorrectSBMLSIdSyntax(name)))
+    {
+      return LIBSBML_INVALID_ATTRIBUTE_VALUE;
+    }
+    else
+    {
+      switch(type)
+      {
+      case SBML_COMPARTMENT:
+        return static_cast <Compartment *> (this)->setId(name);
+        break;
+
+      case SBML_MODEL:
+        return static_cast <Model *> (this)->setId(name);
+        break;
+
+      case SBML_PARAMETER:
+        return static_cast <Parameter *> (this)->setId(name);
+        break;
+
+      case SBML_REACTION:
+        return static_cast <Reaction *> (this)->setId(name);
+        break;
+
+      case SBML_SPECIES:
+        return static_cast <Species *> (this)->setId(name);
+        break;
+
+      case SBML_SPECIES_REFERENCE:
+        return static_cast <SpeciesReference *> (this)->setId(name);
+        break;
+
+      case SBML_UNIT_DEFINITION:
+        return static_cast <UnitDefinition *> (this)->setId(name);
+        break;
+
+      case SBML_ASSIGNMENT_RULE:
+        return static_cast <AssignmentRule *> (this)->setVariable(name);
+        break;
+
+      case SBML_RATE_RULE:
+        return static_cast <RateRule *> (this)->setVariable(name);
+        break;
+
+    #ifdef USE_LAYOUT
+
+      case SBML_LAYOUT_BOUNDINGBOX:
+        static_cast <BoundingBox *> (this)->setId(name);
+        return LIBSBML_OPERATION_SUCCESS;
+        break;
+
+      case SBML_LAYOUT_GRAPHICALOBJECT:
+        static_cast <GraphicalObject *> (this)->setId(name);
+        return LIBSBML_OPERATION_SUCCESS;
+        break;
+
+      case SBML_LAYOUT_LAYOUT:
+        static_cast <Layout *> (this)->setId(name);
+        return LIBSBML_OPERATION_SUCCESS;
+        break;
+
+      case SBML_LAYOUT_LINESEGMENT:
+        static_cast <LineSegment *> (this)->setId(name);
+        return LIBSBML_OPERATION_SUCCESS;
+        break;
+    #endif  /* USE_LAYOUT */
+
+      default:
+        return LIBSBML_UNEXPECTED_ATTRIBUTE;
+        break;
+      }
+    }
+  }
+  else
+  {
+    switch(type)
+    {
+    case SBML_COMPARTMENT:
+      return static_cast <Compartment *> (this)->setName(name);
+      break;
+
+    case SBML_COMPARTMENT_TYPE:
+      return static_cast <CompartmentType *> (this)->setName(name);
+      break;
+
+    case SBML_EVENT:
+      return static_cast <Event *> (this)->setName(name);
+      break;
+
+    case SBML_FUNCTION_DEFINITION:
+      return static_cast <FunctionDefinition *> (this)->setName(name);
+      break;
+
+    case SBML_MODEL:
+      return static_cast <Model *> (this)->setName(name);
+      break;
+
+    case SBML_PARAMETER:
+      return static_cast <Parameter *> (this)->setName(name);
+      break;
+
+    case SBML_REACTION:
+      return static_cast <Reaction *> (this)->setName(name);
+      break;
+
+    case SBML_SPECIES:
+      return static_cast <Species *> (this)->setName(name);
+      break;
+
+    case SBML_SPECIES_REFERENCE:
+      return static_cast <SpeciesReference *> (this)->setName(name);
+      break;
+
+    case SBML_SPECIES_TYPE:
+      return static_cast <SpeciesType *> (this)->setName(name);
+      break;
+
+    case SBML_MODIFIER_SPECIES_REFERENCE:
+      return static_cast <ModifierSpeciesReference *> (this)->setName(name);
+      break;
+
+    case SBML_UNIT_DEFINITION:
+      return static_cast <UnitDefinition *> (this)->setName(name);
+      break;
+
+    default:
+      return LIBSBML_UNEXPECTED_ATTRIBUTE;
+      break;
+    }
+  }
+}
+
+
+/** @endcond doxygen-libsbml-internal */
+
+
+/*
  * Sets the annotation of this SBML object to a copy of annotation.
  */
 int 

Modified: branches/libsbml-4/src/sbml/SBase.h
===================================================================
--- branches/libsbml-4/src/sbml/SBase.h	2009-03-27 09:26:47 UTC (rev 9430)
+++ branches/libsbml-4/src/sbml/SBase.h	2009-03-30 14:36:09 UTC (rev 9431)
@@ -428,22 +428,29 @@
   std::string& getMetaId ();
 
 
-  ///**
-  // * Returns the value of the "id" attribute of this object.
-  // * 
-  // * @return the id of this SBML object.
-  // */
-  //const std::string& getId () const;
+  /** @cond doxygen-libsbml-internal */
 
+  /*
+   * NOTE: THIS IS FOR BACKWARD COMPATABILITY REASONS
+   *
+   * Returns the value of the "id" attribute of this object.
+   * 
+   * @return the id of this SBML object.
+   */
+  const std::string& getId () const;
 
-  ///**
-  // * Returns the value of the "name" attribute of this object.
-  // * 
-  // * @return the name of this SBML object.
-  // */
-  //const std::string& getName () const;
 
+  /*
+   * NOTE: THIS IS FOR BACKWARD COMPATABILITY REASONS
+   *
+   * Returns the value of the "name" attribute of this object.
+   * 
+   * @return the name of this SBML object.
+   */
+  const std::string& getName () const;
 
+  /** @endcond doxygen-libsbml-internal */
+
   /**
    * Returns the content of the "notes" subelement of this object.
    *
@@ -632,30 +639,38 @@
   bool isSetMetaId () const;
 
 
-  ///**
-  // * Predicate returning @c true or @c false depending on whether this
-  // * object's "id" attribute has been set.
-  // *
-  // * @htmlinclude libsbml-comment-set-methods.html
-  // * 
-  // * @return @c true if the "id" attribute of this SBML object has been
-  // * set, @c false otherwise.
-  // */
-  //bool isSetId () const;
+  /** @cond doxygen-libsbml-internal */
 
+  /*
+   * NOTE: THIS IS FOR BACKWARD COMPATABILITY REASONS
+   * Predicate returning @c true or @c false depending on whether this
+   * object's "id" attribute has been set.
+   *
+   * @htmlinclude libsbml-comment-set-methods.html
+   * 
+   * @return @c true if the "id" attribute of this SBML object has been
+   * set, @c false otherwise.
+   */
+  bool isSetId () const;
 
-  ///**
-  // * Predicate returning @c true or @c false depending on whether this
-  // * object's "name" attribute has been set.
-  // *
-  // * @htmlinclude libsbml-comment-set-methods.html
-  // * 
-  // * @return @c true if the "name" attribute of this SBML object has been
-  // * set, @c false otherwise.
-  // */
-  //bool isSetName () const;
 
 
+  /*
+   * NOTE: THIS IS FOR BACKWARD COMPATABILITY REASONS
+   * Predicate returning @c true or @c false depending on whether this
+   * object's "name" attribute has been set.
+   *
+   * @htmlinclude libsbml-comment-set-methods.html
+   * 
+   * @return @c true if the "name" attribute of this SBML object has been
+   * set, @c false otherwise.
+   */
+  bool isSetName () const;
+
+
+  /** @endcond doxygen-libsbml-internal */
+
+
   /**
    * Predicate returning @c true or @c false depending on whether this
    * object's "notes" subelement exists and has content.
@@ -719,61 +734,67 @@
    */
   int setMetaId (const std::string& metaid);
 
+  /** @cond doxygen-libsbml-internal */
 
-  ///**
-  // * Sets the value of the "id" attribute of this SBML object.
-  // *
-  // * The string @p sid is copied.  Note that SBML has strict requirements
-  // * for the syntax of identifiers.  The following is summary of the
-  // * definition of the SBML identifier type @c SId (here expressed in an
-  // * extended form of BNF notation):
-  // * @code
-  // *   letter ::= 'a'..'z','A'..'Z'
-  // *   digit  ::= '0'..'9'
-  // *   idChar ::= letter | digit | '_'
-  // *   SId    ::= ( letter | '_' ) idChar*
-  // * @endcode
-  // * The equality of SBML identifiers is determined by an exact character
-  // * sequence match; i.e., comparisons must be performed in a
-  // * case-sensitive manner.  In addition, there are a few conditions for
-  // * the uniqueness of identifiers in an SBML model.  Please consult the
-  // * SBML specifications for the exact formulations.
-  // *
-  // * @htmlinclude libsbml-comment-set-methods.html
-  // *
-  // * @param sid the string to use as the identifier of this object
-  // *
-  // * @return integer value indicating success/failure of the
-  // * function.  The value is drawn from the
-  // * enumeration operationReturnValues_t.  The possible values
-  // * returned by this function are:
-  // *
-  // * LIBSBML_OPERATION_SUCCESS<br>
-  // * LIBSBML_INVALID_ATTRIBUTE_VALUE<br>
-  // */
-  //virtual int setId (const std::string& sid);
+  /*
+   * NOTE: THIS IS FOR BACKWARD COMPATABILITY REASONS
+   *
+   * Sets the value of the "id" attribute of this SBML object.
+   *
+   * The string @p sid is copied.  Note that SBML has strict requirements
+   * for the syntax of identifiers.  The following is summary of the
+   * definition of the SBML identifier type @c SId (here expressed in an
+   * extended form of BNF notation):
+   * @code
+   *   letter ::= 'a'..'z','A'..'Z'
+   *   digit  ::= '0'..'9'
+   *   idChar ::= letter | digit | '_'
+   *   SId    ::= ( letter | '_' ) idChar*
+   * @endcode
+   * The equality of SBML identifiers is determined by an exact character
+   * sequence match; i.e., comparisons must be performed in a
+   * case-sensitive manner.  In addition, there are a few conditions for
+   * the uniqueness of identifiers in an SBML model.  Please consult the
+   * SBML specifications for the exact formulations.
+   *
+   * @htmlinclude libsbml-comment-set-methods.html
+   *
+   * @param sid the string to use as the identifier of this object
+   *
+   * @return integer value indicating success/failure of the
+   * function.  The value is drawn from the
+   * enumeration operationReturnValues_t.  The possible values
+   * returned by this function are:
+   *
+   * LIBSBML_OPERATION_SUCCESS<br>
+   * LIBSBML_INVALID_ATTRIBUTE_VALUE<br>
+   */
+   int setId (const std::string& sid);
 
 
-  ///**
-  // * Sets the value of the "name" attribute of this SBML object.
-  // *
-  // * The string in @p name is copied.
-  // *
-  // * @htmlinclude libsbml-comment-set-methods.html
-  // *
-  // * @param name the new name for the object
-  // *
-  // * @return integer value indicating success/failure of the
-  // * function.  The value is drawn from the
-  // * enumeration operationReturnValues_t.  The possible values
-  // * returned by this function are:
-  // *
-  // * LIBSBML_OPERATION_SUCCESS<br>
-  // * LIBSBML_INVALID_ATTRIBUTE_VALUE<br>
-  // */
-  //virtual int setName (const std::string& name);
+  /*
+   * NOTE: THIS IS FOR BACKWARD COMPATABILITY REASONS
+   * Sets the value of the "name" attribute of this SBML object.
+   *
+   * The string in @p name is copied.
+   *
+   * @htmlinclude libsbml-comment-set-methods.html
+   *
+   * @param name the new name for the object
+   *
+   * @return integer value indicating success/failure of the
+   * function.  The value is drawn from the
+   * enumeration operationReturnValues_t.  The possible values
+   * returned by this function are:
+   *
+   * LIBSBML_OPERATION_SUCCESS<br>
+   * LIBSBML_INVALID_ATTRIBUTE_VALUE<br>
+   */
+  int setName (const std::string& name);
 
 
+  /** @endcond doxygen-libsbml-internal */
+
   /**
    * Sets the value of the "annotation" subelement of this SBML object to a
    * copy of @p annotation.


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