Support net blast

1) Batch netblast enhancement to support genomes
behind a web interface at NCBI/TIGR.

Details...

As far as I can tell, this genome is still a sequence
in progress and we do
not have the file for downloading. So blastcl3 is
still your only
batchblast choice.

The ftp files are renamed. They are netblast initialed
file at:
ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST-NETBLAST

To call this db use -d Microbial/1772

Regards,

Tao Tao
NCBI USER SErvice

-----Original Message-----
From: Robert Rutherford [mailto:robruth@stolaf.edu]
Sent: Friday, September 19, 2003 4:27 PM
To: Tao, Tao (NIH/NLM/NCBI); blast-help@ncbi.nlm.nih.gov
Subject: [blast-help] Re: higher throughput method?

Hello NCBI help:

I'm working on the problem described below (batch
blasting to the M.
smegmatis genome).

Two questions:

1) Is blastc13 still the best solution? (I don't
suppose I could just
download the genome locally, could I?)

2) If so, where to I find it? Has it been renamed
netblast... hmm....
I'm puzzled.

Thanks for any help you can provide,

RR