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File Date Author Commit
 addons 2017-03-15 Gert Wollny Gert Wollny [7566d6] Disable support for VTK bool image IO because i...
 apps 2011-01-03 Gert Wollny Gert Wollny [336a11] start working on a perfusion analysis gui
 cmake 2017-09-17 Gert Wollny Gert Wollny [f3bbd6] Disable more tests
 doc 2017-03-21 Gert Wollny Gert Wollny [88f5c4] Correct manual page output
 examples 2016-04-06 Gert Wollny Gert Wollny [a6d9a9] Update copyright year
 mia 2017-09-17 Gert Wollny Gert Wollny [f3bbd6] Disable more tests
 octave 2016-04-06 Gert Wollny Gert Wollny [a6d9a9] Update copyright year
 output 2010-08-05 Gert Wollny Gert Wollny [a53c24] change modes
 scripts 2015-10-20 Gert Wollny Gert Wollny [18e1e0] Update segmentation script
 src 2017-09-21 Gert Wollny Gert Wollny [97b1d3] src/3dsegment-local-cmeans: Fix map access error
 test 2016-04-25 Gert Wollny Gert Wollny [ae2347] Add debian patches for std:: includes
 testdata 2016-05-06 Gert Wollny Gert Wollny [a2d375] Add test for reading/writing STL meshes
 testhelpers 2014-04-29 Gert Wollny Gert Wollny [27b645] add 2D normalized local cross correaltion, see ...
 .gitignore 2014-07-29 Gert Wollny Gert Wollny [73e22f] update ignore file
 .travis.yml 2017-09-17 Gert Wollny Gert Wollny [6e27bc] disable testing and use five threads for coverity
 AUTHORS 2015-04-06 Gert Wollny Gert Wollny [ceb50c] update copyright year
 CMakeLists.txt 2017-09-17 Gert Wollny Gert Wollny [df0b60] make it possible to build without tests
 COPYING 2010-08-05 Gert Wollny Gert Wollny [a53c24] change modes
 ChangeLog 2017-03-21 Gert Wollny Gert Wollny [e768b2] Update changelog
 Makefile.outoftree 2011-05-17 Gert Wollny Gert Wollny [41d303] add build type
 NEWS 2012-11-12 Gert Wollny Gert Wollny [4ddeb3] more docu for new release
 README 2015-10-12 Gert Wollny Gert Wollny [b657d7] Add an github style readme
 README.md 2016-04-10 Gert Wollny Gert Wollny [d00d35] Add travis-ci badge [ci skip]
 UseMia.cmake.in 2010-08-05 Gert Wollny Gert Wollny [a53c24] change modes
 config.h.cmake 2016-08-26 Gert Wollny Gert Wollny [180fc7] Force boost::regex if it is set from the build ...
 coverage.sh 2017-01-01 Gert Wollny Gert Wollny [e3581d] update coverage script to also use ninja
 create_package 2012-11-22 Gert Wollny Gert Wollny [70a6d9] update changelog
 evaluate_coverage.sh 2016-07-18 Gert Wollny Gert Wollny [e2f0f8] Correct coverage evaluation script
 mia.hh 2016-04-06 Gert Wollny Gert Wollny [a6d9a9] Update copyright year
 mia.pc.cmake 2011-10-20 Gert Wollny Gert Wollny [309ea3] change pkg-config files
 mia2d.pc.cmake 2011-10-20 Gert Wollny Gert Wollny [309ea3] change pkg-config files
 mia2dmyocardperf.pc.cmake 2011-10-20 Gert Wollny Gert Wollny [309ea3] change pkg-config files
 mia3d.pc.cmake 2015-10-21 Gert Wollny Gert Wollny [8279ce] Change dependencies from libxml++ to libxml
 miaconfig.h.cmake 2015-12-22 Gert Wollny Gert Wollny [b6e648] Start moveing TBB specifics out of the code
 miacore.pc.cmake 2015-05-26 Gert Wollny Gert Wollny [355ea0] Remove boost/filesystem includes from the publi...
 miacore.pc.in 2010-08-05 Gert Wollny Gert Wollny [a53c24] change modes
 miamesh.pc.cmake 2012-03-21 Gert Wollny Gert Wollny [3e60f7] add a pc file for the mesh library
 model_coverty.cpp 2014-09-16 Gert Wollny Gert Wollny [a229dc] update coverty model
 run-test-with-valgrind.csh 2011-10-10 Gert Wollny Gert Wollny [ac9e04] change permissions

Read Me

SYNOPSIS: 

MIA is a collection of libraries and command line tools for the processing 
of gray scale images.

For details, help, etc see http://mia.sourceforge.net

If you use this software for scientific research, please cite it as 

  Wollny G, Kellman P, Ledesma-Carbayo M-J, Skinner MM, Hublin J-J, and Hierl
  Th,   "MIA - A Free and Open Source Software for Gray Scale Medical 
  Image Analysis", Source Code for Biology and Medicine, 2013, 8:20


SUPPORT: 

For support with running MIA or developing new software using MIA please go to 

   https://sourceforge.net/p/mia/discussion/

REPORTING BUGS:
 
Please use the bug tracker at sourceforge to report new bugs: 

  https://sourceforge.net/p/mia/tickets/

KNOWN BUGS: 

* Image orientation and pixel size information is not honoured in the
  image registration code. 
* the implementation of Mutual information needs testing