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Molecule tracking successfully runs with two compartments.

When a mature molecule moves to another compartment and the diffusion constant is different in the new compartment, then this event is added to reactions.txt

Updated some of the test files.

Ran the tests, everything ran successfully.

alebou 2013-11-26

Browse code at this revision

Parent: [r699]

Child: [r701]

changed /branches/MesoRD_MoleculeTracking/src/System.cpp
changed /branches/MesoRD_MoleculeTracking/src/System.hpp
changed /branches/MesoRD_MoleculeTracking/src/test/diffusion.xml
changed /branches/MesoRD_MoleculeTracking/unittest/TestCubicSubvolume.cpp
changed /branches/MesoRD_MoleculeTracking/unittest/TestReaction.cpp
changed /branches/MesoRD_MoleculeTracking/unittest/TestSubvolume.cpp
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/branches/MesoRD_MoleculeTracking/src/System.hpp Diff Switch to side-by-side view
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/branches/MesoRD_MoleculeTracking/src/test/diffusion.xml Diff Switch to side-by-side view
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/branches/MesoRD_MoleculeTracking/unittest/TestCubicSubvolume.cpp Diff Switch to side-by-side view
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/branches/MesoRD_MoleculeTracking/unittest/TestReaction.cpp Diff Switch to side-by-side view
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/branches/MesoRD_MoleculeTracking/unittest/TestSubvolume.cpp Diff Switch to side-by-side view
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