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How to change the number of itreration in the GUI beta code available?
Thank you

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA224

Hi Fernando,

On 07/11/2011 10:21 AM, Fernando Wagner wrote:
> Hello Friends,
> 
> Thanks for the answers. I have some new questions..
> 
> Why you´re going to change from alignment api to kadmos? Maybe the 1.3 versions
> is not good for me, because I want to work with alignment in alignment api format...

The reason why we change to KADMOS is that it is lighter and more robust than
the Alignment API. Other reasons are serialisability of correspondences and
alignments, use of Java Generics thus type safety, etc.) However, it is not as
generic as the Alignment API (currently restricted to 1:1 alignments, OWL API
required for ontology representation, etc.)

The KADMOS API, however, can render and parse alignments in the INRIA format,
i.e. the standard format of the Alignment API.

Do you plan to use MapPSO as a standalone tool or embedded in some Java application?

> So, I downloaded the version of mapPSO used in oaei 2010 (in the sourceforge)..
> So I tried to execute the following command line:
> *
> C:\Users\Fernando>java -jar
> C:\Users\Fernando\Desktop\zemacedo\berna\Prototipo\Matchers\MapPSO\oaei2010\MapPSO.jar
> -P
> C:\Users\Fernando\Desktop\zemacedo\berna\Prototipo\Matchers\MapPSO\oaei2010\params.xml
> -T C -O C:\Users\Fernando\Documents\test1.owl C:\Users\Fernando\Documents\test2.owl*
> 
> But the following error appear... Am I doing something wrong?? I just want to
> generate alignment between test1.owl and test2.owl using params.xml...

It seems that your local path is interpreted as a URI, which is then obviously
malformed. We are currently implementing a generic command line launcher for any
KADMOS-based algorithms, where we will have a closer look at this in order to
accept local paths (on all platforms).

In the meantime, try to provide the filesystem paths to your ontologies as file
URLs, e.g.:

file:///c:/Users/Fernando/Documents/test1.owl

Hope that resolves the issue.

Best,
Jürgen

> Thank you,
> 
> Fernando
> 
> j*ava.net.URISyntaxException: Illegal character in opaque part at index 2: C:\Use
> rs\Fernando\Documents\test1.owl*
>         at java.net.URI$Parser.fail(Unknown Source)
>         at java.net.URI$Parser.checkChars(Unknown Source)
>         at java.net.URI$Parser.parse(Unknown Source)
>         at java.net.URI.<init>(Unknown Source)
>         at au.edu.griffith.align.mappso.eval.TestScenario.uriCheck(TestScenario.
> java:290)
>         at au.edu.griffith.align.mappso.eval.TestScenario.setOnto1(TestScenario.
> java:139)
>         at au.edu.griffith.align.mappso.util.Main.main(Main.java:347)
> *java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\Use
> rs\Fernando\Documents\test2.owl*
>         at java.net.URI$Parser.fail(Unknown Source)
>         at java.net.URI$Parser.checkChars(Unknown Source)
>         at java.net.URI$Parser.parse(Unknown Source)
>         at java.net.URI.<init>(Unknown Source)
>         at au.edu.griffith.align.mappso.eval.TestScenario.uriCheck(TestScenario.
> java:290)
>         at au.edu.griffith.align.mappso.eval.TestScenario.setOnto2(TestScenario.
> java:147)
>         at au.edu.griffith.align.mappso.util.Main.main(Main.java:349)
> java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\Use
> rs\Fernando\Documents\test1.owl
>         at java.net.URI$Parser.fail(Unknown Source)
>         at java.net.URI$Parser.checkChars(Unknown Source)
>         at java.net.URI$Parser.parse(Unknown Source)
>         at java.net.URI.<init>(Unknown Source)
>         at au.edu.griffith.align.mappso.eval.TestScenario.getOnto1(TestScenario.
> java:198)
>         at au.edu.griffith.align.mappso.util.Main.main(Main.java:380)
> 
> 2011/6/17 Juergen Bock <bo...@fz... <mailto:bo...@fz...>>
> 
> Hi Fernando,
> 
> I have just uploaded MapPSO-1.3.0.jar for direct download via Sourceforge.
> 
> However, as Carsten mentioned, there will soon be an updated version.
> 
> Best,
> Jürgen
> 
> On 06/17/2011 10:13 AM, Carsten Dänschel wrote:
>> Hi,
>> I believe you are using the MapPSO-1.2.jar. This version is a bit
>> outdated and you'll be better served using the actual svn version from
>> https://mappso.svn.sourceforge.net/svnroot/mappso/mappso/trunk using the
>> maven project MapPSO-core.
> 
>>> Hello Friends,
>>>
>>> I´m a new MapPSO user, and I trying to execute this software by API..
>>> In the execution, i´m using the default params.xml that came in the
>>> MapPSO zip file..
>>>
>>> However, the following exception appear:
>>>
>>> java.lang.NullPointerException
>>>     at
>>> de.fzi.mappso.align.impl.MapPSOAlignment.align(MapPSOAlignment.java:205)
>>>     at Teste.main(Teste.java:139)
>>>
>>> In my class called "Teste", line 139 is: A1.align((Alignment)null,p);
>>>
>>> where A1 is an AlignmentProcess and p is a Properties, both objects from
>>> AlignmentAPI..
>>>
>>> So, what´s the problem?
> 
>> I'm guessing here but i think that p might be the problem. Have you
>> tried reading the xml file by calling:
>>  Properties a = BasicParameters.read(<Filelocation>);
> 
> 
>> It might be interessting to you that we are moving the MapPSO-project
>> from the AlignmentAPI to Kadmos
>> (http://sourceforge.net/projects/kadmos/). The version using Kadmos can
>> be found at
> 
> https://mappso.svn.sourceforge.net/svnroot/mappso/mappso/branches/kadmosupdate/
>> but it is still work in progress.
> 
>>> Hello Friends,
>>>
>>> In the mapPSO jar file, it have some implemented base matchers..
>>> I´ve interested in alignments generated by base matchers..
>>>
>>> The sourceforge said that we must pass some parameters and obtain an >
>> alignment through the MapPSOALignment object, like this:
>>>
>>> AlignmentProcess alignment = new MapPSOAlignment();
>>>
>>> Have any way to obtain and Alignment directly from base matcher class,
>> without using MapPSOAlignment objetc??
>>>
> 
>> No the basematchers only give a metric for comparing entities of two
>> Ontologies. They do not create alignments. If you run the algorithm with
>> only one basematcher you should get an alignment "generated" by this
>> basematcher.
> 
>> The used basematchers are given in the config file with the
>> "baseDistances" parameter. The values must point to the implemented
>> classes. The 1.2 version of MapPSO uses the package
>> de.fzi.mappso.basematcher but the newer version uses
>> de.fzi.harmonia.commons.basematchers .
> 
>> As you seem to be interessted in the basematchers the harmonia project
>> might be interesting. It can be found at
>> https://mappso.svn.sourceforge.net/svnroot/mappso/harmonia-commons/.
> 
>> Regards,
>> Carsten Dänschel
> 
>> ------------------------------------------------------------------------------
>> EditLive Enterprise is the world's most technically advanced content
>> authoring tool. Experience the power of Track Changes, Inline Image
>> Editing and ensure content is compliant with Accessibility Checking.
>> http://p.sf.net/sfu/ephox-dev2dev
>> _______________________________________________
>> Mappso-users mailing list
>> Map...@li... <mailto:Map...@li...>
>> https://lists.sourceforge.net/lists/listinfo/mappso-users
> 
> 

- ------------------------------------------------------------------------------
EditLive Enterprise is the world's most technically advanced content
authoring tool. Experience the power of Track Changes, Inline Image
Editing and ensure content is compliant with Accessibility Checking.
http://p.sf.net/sfu/ephox-dev2dev
_______________________________________________
Mappso-users mailing list
Map...@li... <mailto:Map...@li...>
https://lists.sourceforge.net/lists/listinfo/mappso-users

- -- 

Dipl.-Inform. Jürgen Bock
Information Process Engineering (IPE)
Tel.: +49-721-9654-824
Fax: +49-721-9654-825
E-Mail: bo...@fz...

==============================================================================
FZI Forschungszentrum Informatik an der Universität Karlsruhe
Haid-und-Neu-Str. 10-14, D-76131 Karlsruhe
Tel.: +49-721-9654-0, Fax: +49-721-9654-959
Stiftung des bürgerlichen Rechts
Stiftung Az: 14-0563.1 Regierungspräsidium Karlsruhe
Vorstand: Dipl. Wi.-Ing. Michael Flor, Prof. Dr. rer. nat. Ralf Reussner,
Prof. Dr. rer. nat. Dr. h.c. Wolffried Stucky, Prof. Dr. rer. nat. Rudi Studer	
Vorsitzender des Kuratoriums: Ministerialdirigent Günther Leßnerkraus
==============================================================================

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Hello Friends,

Thanks for the answers. I have some new questions..

Why you´re going to change from alignment api to kadmos? Maybe the 1.3
versions is not good for me, because I want to work with alignment in
alignment api format...

So, I downloaded the version of mapPSO used in oaei 2010 (in the
sourceforge).. So I tried to execute the following command line:
*
C:\Users\Fernando>java -jar
C:\Users\Fernando\Desktop\zemacedo\berna\Prototipo\Matchers\MapPSO\oaei2010\MapPSO.jar
-P
C:\Users\Fernando\Desktop\zemacedo\berna\Prototipo\Matchers\MapPSO\oaei2010\params.xml
-T C -O C:\Users\Fernando\Documents\test1.owl
C:\Users\Fernando\Documents\test2.owl*

But the following error appear... Am I doing something wrong?? I just want
to generate alignment between test1.owl and test2.owl using params.xml...

Thank you,

Fernando

j*ava.net.URISyntaxException: Illegal character in opaque part at index 2:
C:\Use
rs\Fernando\Documents\test1.owl*
        at java.net.URI$Parser.fail(Unknown Source)
        at java.net.URI$Parser.checkChars(Unknown Source)
        at java.net.URI$Parser.parse(Unknown Source)
        at java.net.URI.<init>(Unknown Source)
        at
au.edu.griffith.align.mappso.eval.TestScenario.uriCheck(TestScenario.
java:290)
        at
au.edu.griffith.align.mappso.eval.TestScenario.setOnto1(TestScenario.
java:139)
        at au.edu.griffith.align.mappso.util.Main.main(Main.java:347)
*java.net.URISyntaxException: Illegal character in opaque part at index 2:
C:\Use
rs\Fernando\Documents\test2.owl*
        at java.net.URI$Parser.fail(Unknown Source)
        at java.net.URI$Parser.checkChars(Unknown Source)
        at java.net.URI$Parser.parse(Unknown Source)
        at java.net.URI.<init>(Unknown Source)
        at
au.edu.griffith.align.mappso.eval.TestScenario.uriCheck(TestScenario.
java:290)
        at
au.edu.griffith.align.mappso.eval.TestScenario.setOnto2(TestScenario.
java:147)
        at au.edu.griffith.align.mappso.util.Main.main(Main.java:349)
java.net.URISyntaxException: Illegal character in opaque part at index 2:
C:\Use
rs\Fernando\Documents\test1.owl
        at java.net.URI$Parser.fail(Unknown Source)
        at java.net.URI$Parser.checkChars(Unknown Source)
        at java.net.URI$Parser.parse(Unknown Source)
        at java.net.URI.<init>(Unknown Source)
        at
au.edu.griffith.align.mappso.eval.TestScenario.getOnto1(TestScenario.
java:198)
        at au.edu.griffith.align.mappso.util.Main.main(Main.java:380)

2011/6/17 Juergen Bock <bo...@fz...>

> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA224
>
> Hi Fernando,
>
> I have just uploaded MapPSO-1.3.0.jar for direct download via Sourceforge.
>
> However, as Carsten mentioned, there will soon be an updated version.
>
> Best,
> Jürgen
>
> On 06/17/2011 10:13 AM, Carsten Dänschel wrote:
> > Hi,
> > I believe you are using the MapPSO-1.2.jar. This version is a bit
> > outdated and you'll be better served using the actual svn version from
> > https://mappso.svn.sourceforge.net/svnroot/mappso/mappso/trunk using the
> > maven project MapPSO-core.
> >
> >> Hello Friends,
> >>
> >> I´m a new MapPSO user, and I trying to execute this software by API..
> >> In the execution, i´m using the default params.xml that came in the
> >> MapPSO zip file..
> >>
> >> However, the following exception appear:
> >>
> >> java.lang.NullPointerException
> >>     at
> >> de.fzi.mappso.align.impl.MapPSOAlignment.align(MapPSOAlignment.java:205)
> >>     at Teste.main(Teste.java:139)
> >>
> >> In my class called "Teste", line 139 is: A1.align((Alignment)null,p);
> >>
> >> where A1 is an AlignmentProcess and p is a Properties, both objects from
> >> AlignmentAPI..
> >>
> >> So, what´s the problem?
> >
> > I'm guessing here but i think that p might be the problem. Have you
> > tried reading the xml file by calling:
> >  Properties a = BasicParameters.read(<Filelocation>);
> >
> >
> > It might be interessting to you that we are moving the MapPSO-project
> > from the AlignmentAPI to Kadmos
> > (http://sourceforge.net/projects/kadmos/). The version using Kadmos can
> > be found at
> >
> https://mappso.svn.sourceforge.net/svnroot/mappso/mappso/branches/kadmosupdate/
> > but it is still work in progress.
> >
> >> Hello Friends,
> >>
> >> In the mapPSO jar file, it have some implemented base matchers..
> >> I´ve interested in alignments generated by base matchers..
> >>
> >> The sourceforge said that we must pass some parameters and obtain an >
> > alignment through the MapPSOALignment object, like this:
> >>
> >> AlignmentProcess alignment = new MapPSOAlignment();
> >>
> >> Have any way to obtain and Alignment directly from base matcher class,
> > without using MapPSOAlignment objetc??
> >>
> >
> > No the basematchers only give a metric for comparing entities of two
> > Ontologies. They do not create alignments. If you run the algorithm with
> > only one basematcher you should get an alignment "generated" by this
> > basematcher.
> >
> > The used basematchers are given in the config file with the
> > "baseDistances" parameter. The values must point to the implemented
> > classes. The 1.2 version of MapPSO uses the package
> > de.fzi.mappso.basematcher but the newer version uses
> > de.fzi.harmonia.commons.basematchers .
> >
> > As you seem to be interessted in the basematchers the harmonia project
> > might be interesting. It can be found at
> > https://mappso.svn.sourceforge.net/svnroot/mappso/harmonia-commons/.
> >
> > Regards,
> > Carsten Dänschel
> >
> >
> ------------------------------------------------------------------------------
> > EditLive Enterprise is the world's most technically advanced content
> > authoring tool. Experience the power of Track Changes, Inline Image
> > Editing and ensure content is compliant with Accessibility Checking.
> > http://p.sf.net/sfu/ephox-dev2dev
> > _______________________________________________
> > Mappso-users mailing list
> > Map...@li...
> > https://lists.sourceforge.net/lists/listinfo/mappso-users
>
>
> - --
>
> Dipl.-Inform. Jürgen Bock
> Information Process Engineering (IPE)
> Tel.: +49-721-9654-824
> Fax: +49-721-9654-825
> E-Mail: bo...@fz...
>
>
> ==============================================================================
> FZI Forschungszentrum Informatik an der Universität Karlsruhe
> Haid-und-Neu-Str. 10-14, D-76131 Karlsruhe
> Tel.: +49-721-9654-0, Fax: +49-721-9654-959
> Stiftung des bürgerlichen Rechts
> Stiftung Az: 14-0563.1 Regierungspräsidium Karlsruhe
> Vorstand: Dipl. Wi.-Ing. Michael Flor, Prof. Dr. rer. nat. Ralf Reussner,
> Prof. Dr. rer. nat. Dr. h.c. Wolffried Stucky, Prof. Dr. rer. nat. Rudi
> Studer
> Vorsitzender des Kuratoriums: Ministerialdirigent Günther Leßnerkraus
>
> ==============================================================================
>
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> Version: GnuPG v1.4.10 (GNU/Linux)
> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
>
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>
>
> ------------------------------------------------------------------------------
> EditLive Enterprise is the world's most technically advanced content
> authoring tool. Experience the power of Track Changes, Inline Image
> Editing and ensure content is compliant with Accessibility Checking.
> http://p.sf.net/sfu/ephox-dev2dev
> _______________________________________________
> Mappso-users mailing list
> Map...@li...
> https://lists.sourceforge.net/lists/listinfo/mappso-users
>

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA224

Hi Fernando,

I have just uploaded MapPSO-1.3.0.jar for direct download via Sourceforge.

However, as Carsten mentioned, there will soon be an updated version.

Best,
Jürgen

On 06/17/2011 10:13 AM, Carsten Dänschel wrote:
> Hi,
> I believe you are using the MapPSO-1.2.jar. This version is a bit
> outdated and you'll be better served using the actual svn version from
> https://mappso.svn.sourceforge.net/svnroot/mappso/mappso/trunk using the
> maven project MapPSO-core.
> 
>> Hello Friends,
>>
>> I´m a new MapPSO user, and I trying to execute this software by API..
>> In the execution, i´m using the default params.xml that came in the
>> MapPSO zip file..
>>
>> However, the following exception appear:
>>
>> java.lang.NullPointerException
>>     at
>> de.fzi.mappso.align.impl.MapPSOAlignment.align(MapPSOAlignment.java:205)
>>     at Teste.main(Teste.java:139)
>>
>> In my class called "Teste", line 139 is: A1.align((Alignment)null,p);
>>
>> where A1 is an AlignmentProcess and p is a Properties, both objects from
>> AlignmentAPI..
>>
>> So, what´s the problem?
> 
> I'm guessing here but i think that p might be the problem. Have you
> tried reading the xml file by calling:
>  Properties a = BasicParameters.read(<Filelocation>);
> 
> 
> It might be interessting to you that we are moving the MapPSO-project
> from the AlignmentAPI to Kadmos
> (http://sourceforge.net/projects/kadmos/). The version using Kadmos can
> be found at
> https://mappso.svn.sourceforge.net/svnroot/mappso/mappso/branches/kadmosupdate/
> but it is still work in progress.
> 
>> Hello Friends,
>>
>> In the mapPSO jar file, it have some implemented base matchers..
>> I´ve interested in alignments generated by base matchers..
>>
>> The sourceforge said that we must pass some parameters and obtain an >
> alignment through the MapPSOALignment object, like this:
>>
>> AlignmentProcess alignment = new MapPSOAlignment();
>>
>> Have any way to obtain and Alignment directly from base matcher class,
> without using MapPSOAlignment objetc??
>>
> 
> No the basematchers only give a metric for comparing entities of two
> Ontologies. They do not create alignments. If you run the algorithm with
> only one basematcher you should get an alignment "generated" by this
> basematcher.
> 
> The used basematchers are given in the config file with the
> "baseDistances" parameter. The values must point to the implemented
> classes. The 1.2 version of MapPSO uses the package
> de.fzi.mappso.basematcher but the newer version uses
> de.fzi.harmonia.commons.basematchers .
> 
> As you seem to be interessted in the basematchers the harmonia project
> might be interesting. It can be found at
> https://mappso.svn.sourceforge.net/svnroot/mappso/harmonia-commons/.
> 
> Regards,
> Carsten Dänschel
> 
> ------------------------------------------------------------------------------
> EditLive Enterprise is the world's most technically advanced content
> authoring tool. Experience the power of Track Changes, Inline Image
> Editing and ensure content is compliant with Accessibility Checking.
> http://p.sf.net/sfu/ephox-dev2dev
> _______________________________________________
> Mappso-users mailing list
> Map...@li...
> https://lists.sourceforge.net/lists/listinfo/mappso-users

- -- 

Dipl.-Inform. Jürgen Bock
Information Process Engineering (IPE)
Tel.: +49-721-9654-824
Fax: +49-721-9654-825
E-Mail: bo...@fz...

==============================================================================
FZI Forschungszentrum Informatik an der Universität Karlsruhe
Haid-und-Neu-Str. 10-14, D-76131 Karlsruhe
Tel.: +49-721-9654-0, Fax: +49-721-9654-959
Stiftung des bürgerlichen Rechts
Stiftung Az: 14-0563.1 Regierungspräsidium Karlsruhe
Vorstand: Dipl. Wi.-Ing. Michael Flor, Prof. Dr. rer. nat. Ralf Reussner,
Prof. Dr. rer. nat. Dr. h.c. Wolffried Stucky, Prof. Dr. rer. nat. Rudi Studer	
Vorsitzender des Kuratoriums: Ministerialdirigent Günther Leßnerkraus
==============================================================================

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Hi,
I believe you are using the MapPSO-1.2.jar. This version is a bit
outdated and you'll be better served using the actual svn version from
https://mappso.svn.sourceforge.net/svnroot/mappso/mappso/trunk using the
maven project MapPSO-core.

> Hello Friends,
> 
> I´m a new MapPSO user, and I trying to execute this software by API..
> In the execution, i´m using the default params.xml that came in the
> MapPSO zip file..
> 
> However, the following exception appear:
> 
> java.lang.NullPointerException
>     at
> de.fzi.mappso.align.impl.MapPSOAlignment.align(MapPSOAlignment.java:205)
>     at Teste.main(Teste.java:139)
> 
> In my class called "Teste", line 139 is: A1.align((Alignment)null,p);
> 
> where A1 is an AlignmentProcess and p is a Properties, both objects from
> AlignmentAPI..
> 
> So, what´s the problem?

I'm guessing here but i think that p might be the problem. Have you
tried reading the xml file by calling:
 Properties a = BasicParameters.read(<Filelocation>);

It might be interessting to you that we are moving the MapPSO-project
from the AlignmentAPI to Kadmos
(http://sourceforge.net/projects/kadmos/). The version using Kadmos can
be found at
https://mappso.svn.sourceforge.net/svnroot/mappso/mappso/branches/kadmosupdate/
but it is still work in progress.

> Hello Friends,
>
> In the mapPSO jar file, it have some implemented base matchers..
> I´ve interested in alignments generated by base matchers..
>
> The sourceforge said that we must pass some parameters and obtain an >
alignment through the MapPSOALignment object, like this:
>
> AlignmentProcess alignment = new MapPSOAlignment();
>
> Have any way to obtain and Alignment directly from base matcher class,
without using MapPSOAlignment objetc??
>

No the basematchers only give a metric for comparing entities of two
Ontologies. They do not create alignments. If you run the algorithm with
only one basematcher you should get an alignment "generated" by this
basematcher.

The used basematchers are given in the config file with the
"baseDistances" parameter. The values must point to the implemented
classes. The 1.2 version of MapPSO uses the package
de.fzi.mappso.basematcher but the newer version uses
de.fzi.harmonia.commons.basematchers .

As you seem to be interessted in the basematchers the harmonia project
might be interesting. It can be found at
https://mappso.svn.sourceforge.net/svnroot/mappso/harmonia-commons/.

Regards,
Carsten Dänschel

Hello Friends,

In the mapPSO jar file, it have some implemented base matchers..
I´ve interested in alignments generated by base matchers..

The sourceforge said that we must pass some parameters and obtain an
alignment through the MapPSOALignment object, like this:

AlignmentProcess alignment = new MapPSOAlignment();

Have any way to obtain and Alignment directly from base matcher class,
without using MapPSOAlignment objetc??

Thank you,

Fernando

Hello Friends,

I´m a new MapPSO user, and I trying to execute this software by API..
In the execution, i´m using the default params.xml that came in the MapPSO
zip file..

However, the following exception appear:

java.lang.NullPointerException
    at
de.fzi.mappso.align.impl.MapPSOAlignment.align(MapPSOAlignment.java:205)
    at Teste.main(Teste.java:139)

In my class called "Teste", line 139 is: A1.align((Alignment)null,p);

where A1 is an AlignmentProcess and p is a Properties, both objects from
AlignmentAPI..

So, what´s the problem??

Thank you,

Fernando

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Dipl.-Inform. Jürgen Bock
Information Process Engineering (IPE)
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Fax: +49-721-9654-825
E-Mail: bo...@fz...

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