BioBrowser Code

#!/bin/bash
cd /tmp
rm -fr jaspar
mkdir jaspar
cd jaspar
pwd
mkdir JASPAR_CORE
cd JASPAR_CORE
wget --progress=dot -r  -nd  -nv  http://jaspar.genereg.net/html/DOWNLOAD/jaspar_CORE/
cd ..
mkdir JASPAR_FAM
cd JASPAR_FAM
echo 'Getting Jaspar FAM'
wget --progress=dot -r  -nd  -nv http://jaspar.genereg.net/html/DOWNLOAD/jaspar_collections/FAM/
cd ..
mkdir JASPAR_PHYLOFACTS
cd JASPAR_PHYLOFACTS
echo 'Getting Jaspar PHYLOFATCS'
wget  --progress=dot -r  -nd -nv  http://jaspar.genereg.net/html/DOWNLOAD/jaspar_collections/PHYLOFACTS/ 
echo 'Got JASPAR '
gksudo 'jaspextract -directory /tmp/jaspar'