#!/bin/bash
echo 'Do not close this window unless you want to interrupt installation'
touch /tmp/biobrowser.err
touch /tmp/biobrowser.log
echo 'Decompress clustal'
cp clustalw-2.0.12.tar.gz /tmp/
cd /tmp
tar zxvf clustalw-2.0.12.tar.gz 2>>/tmp/biobrowser.err
cd clustalw-2.0.12/
echo 'Configuring'
./configure 2>>/tmp/biobrowser.err
err=$?
echo "ERR "$err
if [ "$err" -ne "0" ]; then
echo $err >/tmp/clustalInstall.err
exit $err
fi
echo 'Compiling'
make /tmp/biobrowser.log 2>>/tmp/biobrowser.err
err=$?
echo "ERR "$err
if [ "$err" -ne "0" ]; then
echo $err >/tmp/clustalInstall.err
exit $err
fi
make install 2>>/tmp/biobrowser.err
err=$?
echo "ERR "$err
if [ "$err" -ne "0" ]; then
echo $err >/tmp/clustalInstall.err
exit $err
fi
loc=`which clustalw2`
if [ "$loc" != "/usr/bin/clustalw" ]; then
ln -s $loc /usr/bin/clustalw
fi
chmod 755 /usr/bin/clustalw