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Best Reconciliation Software

Compare the Top Reconciliation Software as of October 2025

What is Reconciliation Software?

Reconciliation software automates the process of matching and verifying financial transactions across accounts, systems, and statements to ensure accuracy and consistency. It helps identify discrepancies, errors, or fraud by comparing data such as bank statements, invoices, payments, and general ledger entries. The software often includes features like automated matching rules, exception handling, audit trails, and reporting to streamline reconciliation workflows. By reducing manual effort and improving accuracy, reconciliation software enhances financial control, compliance, and audit readiness. It is widely used by finance teams in banking, accounting, and corporate environments to maintain trustworthy financial records. Compare and read user reviews of the best Reconciliation software currently available using the table below. This list is updated regularly.

  • 1
    FreshBooks

    FreshBooks

    FreshBooks

    Make invoicing and billing painless for your small business with FreshBooks. A top-rated invoice and accounting software for self-employed professionals and small businesses, FreshBooks offers a fast, easy, and secure way of crunching numbers so companies can focus on doing the work they love. It offers a wealth of powerful features that includes invoicing, expense tracking, time tracking, project management, payment processing, and reporting. FreshBooks also lets users work from anywhere with the Freshworks mobile app.
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    Starting Price: $6.30/month
  • 2
    Xero

    Xero

    Xero

    Xero makes bank reconciliation quick and easy. Automatically match your bank transactions with your accounting records, reducing manual entry and ensuring accuracy. With Xero, you can reconcile accounts in real-time, saving time and avoiding errors. The seamless integration with your bank feeds helps keep your financial data up-to-date and accurate, so you can focus on running your business with confidence.
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    Starting Price: $20/month
  • 3
    Melio

    Melio

    Melio

    Melio is an accounts payable tool built to simplify bill payments, boost workflow efficiency, and optimize cash flow for businesses of all sizes. To get started, try all of Melio's features free for 30 days! Pay vendors online through bank transfers or credit/debit cards, even if they typically accept checks—Melio manages the manual work for you. Effortlessly integrate with QuickBooks and Xero to ensure your financial records stay current. With Melio, pay by bank transfer or card to extend cash flow and earn rewards. Adding vendor or bill details is a breeze—input them manually, upload files, or take a photo of invoices. Schedule payments to align with your cash flow, and let Melio handle the rest. International vendor payments are made easy by paying in their local currency for products and services your business needs. The Melio mobile app, available for iOS and Android, lets you monitor and manage payments anytime, giving you full control over your finances on the go.
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    Starting Price: Free
  • 4
    QuickBooks Online
    QuickBooks Online is the most popular accounting software in the world. QuickBooks Online makes accounting easy. Make tracking receipts, income, bank transactions, and more feel simple with the #1 small business accounting software. Snap photos of your receipts and link them to expenses right from your phone. Our agents are ready and available to answer all your QuickBooks questions. Use the apps you know and love to keep your business running smoothly. QuickBooks Online works on your PC, Mac, tablets, and phones. Click the link above to get a 30 day free trial and 50% off your first 3 months. More than accounting software. QuickBooks helps you track income, expenses, and stay ready for taxes. Customers find on average $3,534 in tax savings per year. Need more help? QuickBooks Live helps you stay organized and be ready for tax time. QuickBooks comes with a mobile app that help you run your business on the go—anytime, anywhere.
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    Starting Price: $9/month (normally $15/month)
  • 5
    Sage Accounting
    Sage Accounting is a cloud-based accounting solution designed to simplify financial management for small businesses, with AI-powered features that automate key tasks like invoicing, VAT returns, and receipt capture. It offers Making Tax Digital (MTD) compatibility and is recognized by HMRC, ensuring seamless tax submissions. Sage Copilot, the built-in AI assistant, helps users stay organized by automating reminders, generating professional communications, and providing real-time financial insights. The platform supports bank connections, cash flow control, detailed reporting, and optional payroll management. Available in three plans—Start, Standard, and Plus—Sage Accounting caters to different business needs, from sole traders to companies managing inventory and multiple currencies. Users benefit from a free 3-month trial, no long-term contracts, and award-winning support that helps maximize productivity.
    Starting Price: £18 per month
  • 6
    Express Accounts

    Express Accounts

    NCH Software

    Accounting software for small business that makes bookkeeping simple and easy. Document incoming and outgoing cash flow including sales, receipts, payments and purchases. See how your business is doing with real time balances and reports. Fax or email your accountant directly. Prepare your tax returns quickly with your financial reports. Secure remote/mobile access.
    Starting Price: $79.99/one-time
  • 7
    QuickBooks Online Advanced
    Get the tools you need to streamline your business and the insights to drive it forward. All in QuickBooks Online Advanced. Get the insights you need most with customizable, presentation-ready reports. Sync your spreadsheets for more accurate business data and custom insights.* Do less manual work by importing and sending hundreds of invoices and expenses at once. Enter and edit multiple bills and checks in just a few steps. We take security seriously, keeping your financial information protected with encryption and security safeguards. Customize how you work with your pick of seamless app integrations built just for QuickBooks Online Advanced.* Integrate with premium apps like DocuSign, Bill.com, HubSpot, Salesforce, and more to make Advanced even more powerful.
    Starting Price: $100 per month
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