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Showing 34 open source projects for "structural equation modeling"

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  • 1
    DataDrivenDiffEq.jl

    DataDrivenDiffEq.jl

    Data driven modeling and automated discovery of dynamical systems

    DataDrivenDiffEq.jl is a package for finding systems of equations automatically from a dataset. The methods in this package take in data and return the model which generated the data. A known model is not required as input. These methods can estimate equation-free and equation-based models for discrete, continuous differential equations or direct mappings.
    Downloads: 2 This Week
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  • 2
    Math Model

    Math Model

    Code, resources, and templates for mathematical modeling

    Math_Model is a repository collecting resources, code, and algorithm templates for mathematical modeling and competition (e.g. Chinese modeling contests, US undergraduate modeling competitions). It includes LaTeX templates for writing solutions, records of past contest problems and winning solutions, algorithm implementations in MATLAB / M scripts for optimization, intelligent algorithms, numerical methods, and model frameworks. In effect, it is a curated library of modeling code, papers...
    Downloads: 9 This Week
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  • 3
    ModelingToolkit.jl

    ModelingToolkit.jl

    Modeling framework for automatically parallelized scientific ML

    ModelingToolkit.jl is a modeling language for high-performance symbolic-numeric computation in scientific computing and scientific machine learning. It then mixes ideas from symbolic computational algebra systems with causal and acausal equation-based modeling frameworks to give an extendable and parallel modeling system. It allows for users to give a high-level description of a model for symbolic preprocessing to analyze and enhance the model. Automatic symbolic transformations, such as index...
    Downloads: 4 This Week
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  • 4
    StructuralEquationModels.jl

    StructuralEquationModels.jl

    A fast and flexible Structural Equation Modelling Framework

    This is a package for Structural Equation Modeling in development. It is written for extensibility, that is, you can easily define your own objective functions and other parts of the model. At the same time, it is (very) fast. We provide fast objective functions, gradients, and for some cases hessians as well as approximations thereof. As a user, you can easily define custom loss functions. For those, you can decide to provide analytical gradients or use finite difference approximation...
    Downloads: 1 This Week
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  • 5
    blavaan

    blavaan

    An R package for Bayesian structural equation modeling

    blavaan is a free, open-source R package for Bayesian latent variable analysis. It relies on JAGS and Stan to estimate models via MCMC. The blavaan functions and syntax are similar to lavaan. The development version of blavaan (containing updates not yet on CRAN) can be installed via the command provided in the documentation. Compilation is required; this may be a problem for users who currently rely on a binary version of blavaan from CRAN. The blavaan package depends on the lavaan package...
    Downloads: 0 This Week
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  • 6
    CausalImpact

    CausalImpact

    An R package for causal inference in time series

    ..., and it divides the time horizon into “pre-intervention” and “post-intervention” periods. It uses Bayesian modeling to fit a structural time series to the pre-period and extrapolate a counterfactual prediction for the post period, then compares observed vs predicted to infer the causal effect. The package supports plotting, summary tables, and verbal narratives for interpretive reports.
    Downloads: 2 This Week
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  • 7
    JUDI.jl

    JUDI.jl

    Julia Devito inversion

    JUDI is a framework for large-scale seismic modeling and inversion and is designed to enable rapid translations of algorithms to fast and efficient code that scales to industry-size 3D problems. The focus of the package lies on seismic modeling as well as PDE-constrained optimization such as full-waveform inversion (FWI) and imaging (LS-RTM). Wave equations in JUDI are solved with Devito, a Python domain-specific language for automated finite-difference (FD) computations. JUDI's modeling...
    Downloads: 1 This Week
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  • 8
    AlphaFold 3

    AlphaFold 3

    AlphaFold 3 inference pipeline

    AlphaFold 3, developed by Google DeepMind, is an advanced deep learning system for predicting biomolecular structures and interactions with exceptional accuracy. This repository provides the complete inference pipeline for running AlphaFold 3, though access to the model parameters is restricted and must be obtained directly from Google under specific terms of use. The system is designed for scientific research applications in structural biology, biochemistry, and bioinformatics, enabling...
    Downloads: 2 This Week
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  • 9
    statsmodels

    statsmodels

    Statsmodels, statistical modeling and econometrics in Python

    ... of the one-parameter exponential family distributions. Markov switching models (MSAR), also known as Hidden Markov Models (HMM). Vector autoregressive models, VAR and structural VAR. Vector error correction model, VECM. Robust linear models with support for several M-estimators. statsmodels supports specifying models using R-style formulas and pandas DataFrames.
    Downloads: 1 This Week
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  • 10
    GNNePCSAFT

    GNNePCSAFT

    Smart Thermodynamic Modeling with Graph Neural Networks

    Our project harnesses the power of Graph Neural Network (GNN) to estimate pure-component parameters of the state-of-the-art Equation of State, PC-SAFT. We aim to empower users to leverage this robust equation without the need for prior experimental data, revolutionizing the calculation of thermodynamic properties and enhancing process simulations. FeOS is used for the PC-SAFT calculations. The estimated parameters can be used in DWSIM and Aspen HYSYS process simulators.
    Downloads: 3 This Week
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  • 11
    No-code system is for the visual creation of structural-functional models and the automatic generation of R language simulation models. The program can be used to describe information, production, organizational, and other processes. For graphical representation, the EdPM/EPM notation is used, which allowed us to implement: - structural-functional modeling using graphical methods; - the study of the efficiency of structural-functional models using simulation methods, that allow (e.g. unlike...
    Downloads: 0 This Week
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  • 12
    codeforces-go

    codeforces-go

    Solutions to Codeforces by Go

    Golang algorithm competition template library. Due to the complexity of algorithm knowledge points, it is necessary to classify the algorithms you have learned and the questions you have done. An algorithm template should cover the following points. Basic introduction to the algorithm (core idea, complexity, etc.) Reference links or book chapters (good material) Template code (can contain some comments, usage instructions) Template supplements (extra codes in common question types, modeling...
    Downloads: 1 This Week
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  • 13
    DSGE.jl

    DSGE.jl

    Solve and estimate Dynamic Stochastic General Equilibrium models

    DSGE.jl is a Julia package developed by the Federal Reserve Bank of New York for estimating and analyzing dynamic stochastic general equilibrium (DSGE) models. It provides tools for Bayesian estimation, filtering, forecasting, and model comparison, supporting both academic research and policy applications. DSGE.jl includes pre-configured models used by central banks and offers extensibility for custom macroeconomic modeling.
    Downloads: 2 This Week
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  • 14
    AliceMind

    AliceMind

    ALIbaba's Collection of Encoder-decoders from MinD

    This repository provides pre-trained encoder-decoder models and its related optimization techniques developed by Alibaba's MinD (Machine IntelligeNce of Damo) Lab. Pre-trained models for natural language understanding (NLU). We extend BERT to a new model, StructBERT, by incorporating language structures into pre-training. Specifically, we pre-train StructBERT with two auxiliary tasks to make the most of the sequential order of words and sentences, which leverage language structures at the...
    Downloads: 0 This Week
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  • 15

    DiPoly

    Diffraction analysis of Polymers

    DiPoly is a new software that implements basic diffraction methods for the structural characterization of biopolymers. It is freeware with a friendly interface for the analysis of experimental powder X-ray diffractograms of polymer samples of biomass of various origins. A complex approach approach based on a combination of the Segal, decomposition and LeBale methods is used to estimate the degree of crystallinity. The Scherrer equation is used to determine the sizes of coherent scattering...
    Downloads: 0 This Week
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  • 16
    Virtual Laboratory Environment

    Virtual Laboratory Environment

    A multi-modeling and simulation environment to study complex systems

    VLE is a multi-modeling and simulation environment to study complex dynamic systems. VLE is based on the discrete event specification DEVS. and it implements the DSDE formalism (A merge of Dynamic Structure DEVS, DSDEVS, with Parallel DEVS, PDEVS). VLE provides a complete set of C++ libraries, called VFL (VLE Foundation Libraries), to develop DEVS models, to gets results of simulations, to launch simulation on cluster. The models can be developed with the DEVS formalism or with the classical...
    Downloads: 5 This Week
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  • 17
    The purpose of the current project is the development of a potentially open-source platform that would provide the capability to conduct virtual bioequivalence trial simulations. Ideally, this user-friendly platform will provide the user with many user-defined capabilities. Algorithm implementation for population pharmacokinetic analysis: The current project describes the marriage between PBPK modeling and population-based statistical analysis. The latter is necessary for parameter estimation...
    Downloads: 0 This Week
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  • 18

    BioNet-Finder

    Network-based modeling and analysis for complex biological data

    ..., genomic complexity, latent effects on the observed system, and output ranking. This is carried out applying network analysis methods from different fields, such as Structural Equation Modeling (SEM), together with data reduction algorithms (e.g., random walkers, spectral analysis, shortest path-based or topology-based algorithms). The BioNet-Finder project is at its initial steps, and it will continuously update with new methods and code.
    Downloads: 0 This Week
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  • 19
    Indeterminate Beam Analysis Program

    Indeterminate Beam Analysis Program

    Calculates SF, BM, Slope and Deflection.

    IBAP is a structural beam analysis software that can be used by Civil, Mechanical and Structural Engineers, Beam designers and Engineering students for both professional and academic purposes.
    Downloads: 0 This Week
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  • 20
    Gekko Timeseries Software

    Gekko Timeseries Software

    Timeseries handling, and solving of large-scale economic models

    Gekko Timeseries Software is a free time-series oriented software package for timeseries handling, and solving and analyzing large-scale economic models. Since 2009, Gekko is being used by Danish ministeries, banks, interest groups and universities, for the simulation of economic and energy-related models. The software runs under Windows (.NET), and is open source (GNU GPL)
    Downloads: 0 This Week
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  • 21
    ... effects observed in the axial strain profile computed with molecular mechanics. Reference M. Malagù, E. Benvenuti and A. Simone. “One-dimensional nonlocal elasticity for tensile single-walled carbon nanotubes: A molecular structural mechanics characterization“. European Journal of Mechanics: A-Solids, 54:160–170, 2015. http://www.sciencedirect.com/science/article/pii/S0997753815000698
    Downloads: 0 This Week
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  • 22

    FPF_predict

    Fine Particle Fraction (FPF) predictor

    Application implements models described by classical mathematical equation for in vitro deposition prediction based on characteristics of formulation and assay conditions. This work was funded by Poland-Singapore bilateral cooperation project no 2/3/POL-SIN/2012. Published article: https://www.dovepress.com/empirical-modeling-of-the-fine-particle-fraction-fornbspcarrier-based--peer-reviewed-fulltext-article-IJN
    Downloads: 0 This Week
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  • 23

    SEM_bestShortestPath

    A SEM-based method for disease module detection

    SEM_bestShortestPath is a Structural Equation Modeling (SEM)-based methodology to evaluate the most important shortest paths between differentially expressed genes in biological interaction networks, with absolutely no need of user-defined parameters or heuristic rules, enabling a free-of-bias discovery and overcoming common issues affecting recent network-based algorithms. SEM-bsp is based on Structural Equation Modeling techniques to detect significantly perturbed sub-networks (disease...
    Downloads: 0 This Week
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  • 24
    MSL

    MSL

    http://dx.doi.org/10.1002/jcc.22968

    ... modeling or design). MSL is developed in the Senes Lab at the University of Wisconsin-Madison and by a team of developers/users from other research laboratories. Reference: Kulp DW, Subramaniam S, Donald JE, Hannigan BT, Mueller BK, Grigoryan G, Senes A. Structural informatics, modeling, and design with an open-source Molecular Software Library (MSL). J Comput Chem. 2012 vol. 33 pages 1645-61 Download article at http://dx.doi.org/10.1002/jcc.22968
    Downloads: 0 This Week
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  • 25
    SPADE

    SPADE

    A toolkit for developing and deploying protein structure algorithms.

    The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE.
    Downloads: 0 This Week
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