Open Source Ruby Scientific/Engineering Software for Linux

Grafana OSS is a leading open-source visualization and observability platform that lets you query, visualize, alert on, and explore your data—regardless of where it’s stored. With support for 100+ data source plugins (such as Prometheus, Loki, Elasticsearch, InfluxDB, SQL/NoSQL databases, OTel, and more), you can unify metrics, logs, traces, and other observability signals in one place. Grafana OSS empowers you to build dynamic, reusable dashboards with rich visualizations, template variables, interactive filtering, and cross-panel linking. Its Explore mode enables ad-hoc queries and side-by-side comparisons of time ranges, queries, and data sources. Grafana also includes built-in alerting, allowing you to define threshold-based rules and send notifications to external systems (e.g. Slack, PagerDuty, OpsGenie). Backed by a strong community (https://grafana.com/community/) and open governance, Grafana OSS is free to use, modify, and deploy under the AGPL-3.0 license.

Manyfold is an open-source 3D collaboration platform that reimagines how distributed teams and communities can meet, create, and interact in immersive spatial environments through the web. Instead of forcing users to download native apps or create accounts on closed metaverse services, Manyfold runs entirely in the browser, letting people join 3D spaces with simple links and participate in real time using avatars, voice chat, and object interaction. Users can build or import shared 3D worlds, arrange media, embed content, and design interactive layouts that support presentations, workshops, social events, games, and team gatherings without heavy software installations. The platform emphasizes accessibility and flexibility, making 3D collaboration as easy as sharing a document link while still providing spatial audio, synchronized interactions, and physics-aware environments that feel alive and responsive.

An STL format importer/exporter plugin script for Google SketchUp. Supports both binary and ASCII import and export.

The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.

FORTRAN Unit Test Framework, written in FORTRAN 95. So that all FORTRAN features can be tested. FRUIT has assertion, fixture, setup, teardown, report, spec, driver generation. Rake used as build tool. Tutorials at http://fortranxunit.wiki.sourceforge.net The core testing part is in FORTRAN, this part can be used independent of the Ruby codes. The Ruby code is to make fixtures and reports easier. Rake is to build the project elegantly. This project also demonstrate a new way to build mixed language code in an alternative way than Make. Most of the FORTRAN are important in nature, used in nuclear and aerospace codes, etc, and maintained and written actively. Please help to bring TDD practices to the FORTRAN community. The change could be very hard, personally, I quit, since I could not make the change. I hope your organization will be successful. Enjoy a cup of fruit while maintaining FORTRAN ! Andrew Hang Chen and other maintainers who feel importance of TDD in cr

A quantitative finance C++ library for modeling, pricing, trading, and risk management in real-life. A cross-platform free/open-source tool for derivatives and financial engineering.

PROJECT HAS MOVED! ROS is now hosted at https://code.ros.org/gf/project/ros/

BenchLab is a Web Application benchmarking framework using real web browsers.

sciNote is an open source electronic lab notebook (ELN) that helps you manage your laboratory work and stores all your experimental data in one place. sciNote is specifically designed for life science students, researchers, lab technicians and group leaders.

This is a plugin written for Google Sketchup to perform structural analysis. Currently the plugin is limited to pin jointed trusses but the fully developed version of the plugin will include rigid jointed 3d frames with various loading conditions

Spark is a physical simulation system. The primary purpose of this system is to provide a *generic* simulator for different kinds of simulations. In these simulations, agents can participate as external processes.

A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are interested in reuse, and we focus on common NLP tasks that are broadly useful for textmining.

COLDIC is an integrated lexicographic platform for creation and management of electronic lexica. Generates itself automatically from a DTD with the database schema and provides human interfaces (query and insert tools) and machine interfaces(webservices)

JLink lets users author flow charts based on ISO 5807 and IBM standards. Developers can use JLink to add flowcharts to applications, serve a flow chart over the web in PDF or PNG, or dynamically create a flowchart with Javascript, Python or Ruby scripts

Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry, quality control, consistency checks and basic analysis of the data It was designed with an emphasis on user friendliness, it has a modern user interface and is easy to navigate. Is available in several languages. (English, French, Spanish, Portuguese, Russian, Turkish, Georgian, and Chinese.)

ChronoSVG generates a timing diagram, as used in electrical devices documentations, from a simple and intuitive ASCII source file. The output file is in SVG format, and makes use of CSS to defer the styling details to presentation time.

The SPELL gene expression explorer searches multiple datasets for related gene expression patterns. Hibbs MA, et al. Exploring the functional landscape of gene expression: Directed search of large microarray compendia. Bioinformatics, 2007.

Object oriented reusable software classes designed to be used to construct larger software projects developed in multiple software languages.

Ruby classes for arbitrary precision floating point and arbitrary precision complex numbers. Keeps track of accumulated error. Uses overloaded operators. Also some testing programs. Used with a Ruby version of sode (sode.rb).Ruby versions new

Embedded system design (VHDL description) based on Xilinx's Spartan3E Development Kit to perform real-time PID control and monitoring of time critical plants such as brushless DC motors, maglevs... vimeo.com/channels/anie prezi.com/gpbycavq499c/anie/

AnyBed: a testbed-independent topology configuration tool

Apollo3D is a team in RoboCup soccer simulation 3D league. The target is to build a nice team with wonderful skills and good cooperation among players.

Tab2MAGE uses a flexible spreadsheet format for MIAME annotation of microarray experiments. Tab2MAGE spreadsheets may be submitted directly to ArrayExpress, or used to generate MAGE-ML for data exchange.

Atlas is a suite of variant analysis tools specializing in the separation of true SNPs and insertions and deletions (indels) from sequencing and mapping errors in Whole Exome Capture Sequecing (WECS) data.

Convert copy. Pipes existing converter tools together to convert files from a format to another. E.g. add the converters 'pdf -> text' and 'text -> wav' and you can convert pdf to wav. Automatically installs missing converters in Debian.