Search Results for "structural" - Page 9
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Showing 285 open source projects for "structural"
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Seurat
A sequence analysis tool for normal/tumor DNA and RNA data.
THIS IS NO LONGER THE HOME FOR SEURAT. PLEASE GO TO https://sites.google.com/site/seuratsomatic/ --- Seurat is an sequence analysis program for somatic mutation and allelic imbalance discovery in paired tumor and normal genome and transcriptome data. -
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Structural Variant Detection
SV detection in paired end whole genome sequencing data
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SOAPsv
SOAPsv: is a program for detecting the structural variation
This is an approach that complements previous methods for reliable homozygous structural variation identification. Our approach accurately determines genotype and breakpoints relative to a reference genome based on de novo assembly of Illumina Genome Analyzer sequencing data. In this method, we examined only homozygous structural variations because detecting heterozygous structural variations requires assembly of haplotype sequences, which is not yet possible using existing assemblers. -
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TreQ
Indel-tolerant Read Mapper
TreQ aims at mapping reads from next generation sequencing (NGS) data to a reference genome, with emphasis on accuracy in the presence of structural variations like insertions and deletions. -
The most advanced C and C++ source code analyzerTrustInSoft Analyzer is a C and C++ source code analyzer powered by formal methods, mathematical & logical reasonings that allow for exhaustive analysis of source code. This analysis can be run without false positives or false negatives, so that every real bug in the code is found. Developers receive several benefits: a user-friendly graphical interface that directs developers to the root cause of bugs, and instant utility to expand the coverage of their existing tests. Unlike traditional source code analysis tools, TrustInSoft’s solution is not only the most comprehensive approach on the market but is also progressive, instantly deployable by developers, even if they lack experience with formal methods, from exhaustive analysis up to a functional proof that the software developed meets specifications.
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X3DBio2
A visual analysis tool for biomolecular structure comparison
A major problem in structural biology is the recognition of differences and similarities between related three dimensional (3D) protein structures. X3DBio2 is a visual analysis tool for 3D biomolecular structure comparison that allows for a clear comparison between similar structures from various species, for elucidation of structural effects of mutations, and for assessment of snapshots from molecular dynamics trajectories. -
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PeabraiN
A PIPE Extension for Performance Estimation and Resource Optimisation
PeabraiN tool is a collection of PIPE (Platform Independent Petri net Editor) modules for computing bounds, resource optimisation, and more bizarre properties on the Petri nets. Namely, the feature supported by PeabraiN are, namely: Performance Estimation, Resource Optimisation, Structural Enabling, Structural Marking, Visit Ratio Computation, and SPN Simulation Analysis. For more details, see the project website at http://webdiis.unizar.es/GISED/?q=tool/peabrain -
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NetDS is provided to easily observe the dynamic behaviors of signaling, regulatory as well as random Boolean networks by two types of mutaion. Otherwise, some structural properties can also be found to understand more about those dynamic behaviors.
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The neuroimaging in python (NIPY) project is an environment for the analysis of structural and functional neuroimaging data. It currently has a full system for general linear modeling of functional magnetic resonance imaging (fMRI).
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Endpoint Protection Software for Businesses | HYPERSECUREThe HYPERSECURE endpoint protection platform is a comprehensive suite of products and services enhanced by European third-party solutions. It ensures our customers’ IT security, regulatory compliance, and digital sovereignty.
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OmniMark mode
OmniMark major mode for Emacs/XEmacs
This is an Emacs/XEmacs major mode for editing OmniMark programs. It supports syntax highlighting, and uses heuristics to help with indentation. Additionally, programs can be navigated according to their structure. -
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Cowslip
Cowslip, the BPMN 2.0 Java Verifier
Cowslip is an Eclipse Plug-in that give the possibility to formally verify structural problems of Business Process models designed with Eclipse BPMN 2.0 SOA Modeler. -
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Fachwerk3D calculates three-dimensional strut-and-tie models used by structural engineers for analysing and designing reinforced concrete structures. The program only uses the equilibrium conditions, thus it is not assuming elastic behaviour.
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Fachwerk calculates strut-and-tie models used by structural engineers for analysing and designing reinforced concrete structures. The program only uses the equilibrium conditions, thus it is not assuming elastic behaviour.
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Google+ API Ontology
Google+ API Ontology is an ontology describing Google+ API
An ontology based representation of its structural and functional properties. The ontology describes valuable structural and functional details of the API, in a machine processable format useful for understanding the API and creating ontology based Mashups that use the API. -
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The solid and structural mechanics module for Netgen/NGSolve. It allows to solve linear and non-linear static and dynamic problems.
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Configuration markup language
Human readable and human writable format for the config files
...But too much <tag></tag> everywhere make the XML for *.config or *.ini files almost human unreadable and uneditable. This library intended to read text of markup configurations files in uniform way. Text information from the file is loaded by your program as a structural tree. After slurping a *.config file we can supply the resulting objects to object instances of our program to let them configure themselves. So, it facilitates text information to supply configuration data to object-oriented software. Advantage - we can use markups to mark just the groups of the parameters only. And we do obliged not to keep markups for the every Name=Value pairs like XML does. ... -
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The Xtal System is a comprehensive suite of small molecule structural solution, refinement and analysis software, supporting both X-ray, neutron and electron diffraction data. It runs on both Unix and MS Win32 platforms and uses tcl/tk graphics.
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The TIMTAM (Target Information Management Tracking And More) system implements a secure knowledgebase supporting the management, tracking, and analysis of experimental data associated with structural biology projects.
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Blueprint CSS
A CSS framework that aims to cut down on your CSS development time
...It combines normalized defaults with helpful utilities—such as column layouts, form styling, and typography helpers—so developers can build responsive sites with less repetitive CSS. Because it’s designed as a structural foundation rather than a themed UI kit, it’s easy to layer branding and custom design on top without fighting the base styles. The framework includes mixins, modifier classes, and responsive breakpoints so layouts adapt fluidly across screen sizes. By starting with a consistent baseline, Blueprint CSS reduces cross-browser quirks and gives designers confidence in spacing, proportion, and element alignment. ... -
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Programming language Karel is a game to learn structural programming. It consist of graphical user interface and debugger that provide easy and fast learning.
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A project dedicated to the identification of genomic breakpoints utilizing freely available tools and custom analytical techniques. THIS PROJECT IS NO LONGER SUPPORTED. IT IS BEING MAINTAINED TO SUPPORT OLD PUBLICATIONS. PLEASE USE A MORE MODERN TOOL FOR STRUCTURAL VARIANT DETECTION. THANK YOU FOR YOUR SUPPORT!
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2metDB implements methods for prediction of structural elements for two well studied classes: modular polyketides and nonribosomally encoded peptides by performing in silico predictions of microbial secondary metabolic pathways from DNA sequence data
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Graphical editor using HTML5 canvas for input of chemical structures, molecule interactions, as well as protein sequence and 3D structural motifs. Facilitates searches in chemo-informatics, bioinformatics and structural biology .