Search Results for "structural" - Page 6
Sort By:
Showing 285 open source projects for "structural"
View related business solutions-
Gen AI apps are built with MongoDB AtlasMongoDB Atlas is the developer-friendly database used to build, scale, and run gen AI and LLM-powered apps—without needing a separate vector database. Atlas offers built-in vector search, global availability across 115+ regions, and flexible document modeling. Start building AI apps faster, all in one place.
-
EHS Software and Management SystemERA Environmental Software Solutions develops web-based EHS management software for small, medium, and large manufacturers needing to comply with federal, provincial, and state regulations, monitor their air, water, and waste emissions and other environmental outputs, author and manage Safety Data Sheets (SDS) in more than 40 languages, or standardize their Health and Safety procedures for incident and inspection tracking, training delivery, and audit management. The platform also supports comprehensive reporting for programs like TRI, Tier II, Title V, NEI, and NPRI. Companies across the automotive, aerospace, general manufacturing, and paints and coatings industries, to name a few, rely on ERA’s all-in-one, SOC 2 Type II certified SaaS for complete coverage of their EHS needs.
-
1
Pikkr
JSON parser to pick up values directly without performing tokenization
JSON Parser which picks up values directly without performing tokenization in Rust. Pikkr is a JSON parser that picks up values directly without performing tokenization in Rust. Creates an index which maps logical locations of queried fields to their physical locations by using SIMD instructions and bit manipulation. Finds values of queried fields by scanning a JSON record using the index created in the previous process and learns their logical locations (i.e. pattern of the JSON structure)... -
2
Go Patterns
Curated list of Go design patterns, recipes and idioms
This repository is a curated collection of idiomatic Go design patterns, coding recipes, and best practices aimed at Go programmers. It organizes patterns under categories such as creational, structural, behavioral, concurrency, messaging, and anti-patterns, giving examples and explanations of how to apply them in real Go code. Creational, structural, behavioral pattern examples in Go. Explanatory commentary and sample code snippets. Concurrency idioms (e.g. bounded parallelism, fan-in/fan-out). Organized taxonomy for Go idioms. -
3
BPPS-SIPRIS
sequence/structural analysis programs
A suite of statistically-based programs for inferring joint sequence-structural determinants of protein functional specificity written in C/C++ within a linux environment. -
4
irayMol
Molecular visualization
Analyses and Interactive visualizations of the structures, functions and actions of biomolecules including molecular surface computation, and protein-ligand interface and protein-ligand docking where the ligand could a small compound, a nucleic acid, membrane and other proteins, written in C++/Qt/openGL/GLSL with more than 125,000 lines of codes. In addition to Qt, the only external library needed is GSL everything else is coded from the scratch. -
Optimize every aspect of hiring with Greenhouse RecruitingWhat’s next for many of us is changing. Your company’s ability to hire great talent is as important as ever – so you’ll be ready for whatever’s ahead. Whether you need to scale your team quickly or improve your hiring process, Greenhouse gives you the right technology, know-how and support to take on what’s next.
-
5
novoBreak
Robust detection of somatic structural breakpoints in cancer genomes
novoBreak is a tool used in cancer genomic studies to discover SV (both somatic and germline) breakpoints. It can report accurate breakpoints of Deletions (DEL), Duplications (DUP), Inversions (INV) and Translocations (TRA) (you should consider some of them are mobile elements insertions or templated insertions). For novel insertions, we may only report the breakpoints but not the inserted sequence. Please forget about novel insertions at the moment. We will work on that later. It was... -
6
MatQuantify
An image processing tool
MatQuantify, written in MATLAB, detects both large-scale and subtle structural changes in the spindle or DNA and can be used to statistically compare the effects of different treatments. MatQuantify can quantify various physical properties extracted from fluorescence microscopy images, such as area, lengths of various components, perimeter, eccentricity, fractal dimension, satellite objects and orientation. -
7
node2vec
Learn continuous vector embeddings for nodes in a graph using biased R
...The algorithm is designed to learn continuous vector representations of nodes in a graph by simulating biased random walks and applying skip-gram models from natural language processing. These embeddings capture community structure as well as structural equivalence, enabling machine learning on graphs for tasks such as classification, clustering, and link prediction. The repository contains reference code accompanying the research paper node2vec: Scalable Feature Learning for Networks (KDD 2016). It allows researchers and practitioners to apply node2vec to various graph datasets and evaluate embedding quality on downstream tasks. ... -
8
Fachwerk3D calculates three-dimensional strut-and-tie models used by structural engineers for analysing and designing reinforced concrete structures. The program only uses the equilibrium conditions, thus it is not assuming elastic behaviour.
-
9
PBSuite
Software for Long-Read Sequencing Data from PacBio
...PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. ----- PBHoney ----- Read The Paper http://www.biomedcentral.com/1471-2105/15/180/abstract PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants. -
E-commerce Fulfillment For Scaling BrandsFlowspace delivers fulfillment excellence by pairing powerful software and on-the-ground logistics know-how. Our platform provides automation, real-time control, and reliability beyond traditional 3PL capabilities—so you can scale smarter, faster, and easier.
-
10
Plant Metabolite Annotation Toolbox (PlantMAT) is a computational tool combining library search and combinatorial enumeration to facilitate the structural identification of plant specialized metabolites, e.g., saponins and flavonoid glycosides.
-
11
CVDdb
Cerebrovascular Disease database
...The data itself is for internal access only during project development. Development is by the BRAINS imagebank team : (http://www.brainsimagebank.ac.uk/, Job et al., 2016) Job et al., 2016. A brain imaging repository of normal structural MRI across the life course: Brain Images of Normal Subjects (BRAINS). http://dx.doi.org/10.1016/j.neuroimage.2016.01.027 Das et al, 2011. LORIS: a web-based data management system for multi-center studies. Frontiers in Neuroinformatics (5:37). -
12
Kernel for Newbies
Kernel Build
Project temporarily suspended. Due to the structural changes, we are temporarily suspending the project so that new stable tests are available for release of the script to the public. "Kernel for Newbies" é um simples e completo, assistente para sistemas baseados no Debian, para construir, customizar e instalar seu kernel. O KFN foi reescrito do zero na versão 3.0 para suportar melhor suporte aos mais recentes sistemas GNU/Linux. -
13
Biskit is a python library for structural bioinformatics research. It simplifies the analysis of macromolecular structures, protein complexes, and molecular dynamics trajectories and offers a platform for the rapid integration of external programs. PLEASE NOTE: The Biskit source code as well as any later releases are now hosted on https://github.com/graik/biskit The sourceforge repo is only kept here for reference.
-
14
This is the Sourceforge reposository of the EU project Xperience. We work on developing a Cognitive Architecture for humanoid robots using a combination of developmental approaches and structural bootstrapping - a concept from language learning.
-
15
LAMSA
Long Approximate Matches-based Split Aligner
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed and good ability of handling SV events. It is well-suited to align long reads (over thousands of base-pairs). -
16
beam3d
3d beam FEM structural analysis
3D FEM structural analysis using the beam element. It works with macro preprocessor and system pipes. -
17
Crosscut is a set of high-quality and efficient modules handling NGS datasets in a population. Chronos is a highly sensitive and efficient multiple whole genome aligner in a population. Apollo is a structural variant caller in a population. Poseidon is a highly sensitive and efficient taxonomy classifier. All algorithms are developed since Feb. 6. 2015 by Euncheon Lim in Prof. Weigel's Lab in Max-Planck Institute for Developmental Biology.
-
18
PRIP
RNA-binding residues prediction using structural features
-
19
SoftSV
Calling structural variations. The soft way.
...It uses aberrant paired-end mappings to determine approximative breakpoint regions and refines the breakpoints by analysing soft-clipped sequences for potential split-reads. For more information about the algorithm and an evaluation, have a look at this publication: "Robust and exact structural variation detection with paired-end and soft-clipped alignments: SoftSV compared with eight algorithms" (PMID 25998133) Please cite this artilce if you used SoftSV in your publication. -
20
CoGA
R package for differential co-expression analysis
CoGA (Co-expression Graph Analyzer) is an R package to identify differentially co-expressed gene sets between two phenotypes. The software infers gene regulatory networks from gene expression data, and compares structural properties of the inferred networks based on their spectrum distributions. It also compares the networks in terms of their gene centralities, clustering coefficients and shortest path lengths. In addition to the differential co-expression analyses, the tool provides graphical interfaces for network visualization, ranking of genes according to their "importance" in the network, and the standard single gene differential expression analysis. -
21
...By using the proper set of nonlocal parameters, it is possible to correctly capture size and chirality effects observed in the axial strain profile computed with molecular mechanics. Reference M. Malagù, E. Benvenuti and A. Simone. “One-dimensional nonlocal elasticity for tensile single-walled carbon nanotubes: A molecular structural mechanics characterization“. European Journal of Mechanics: A-Solids, 54:160–170, 2015. http://www.sciencedirect.com/science/article/pii/S0997753815000698
-
22
Copy Number Explorer
Interactive Copy Number Analysis for Cancer Genomics
Deployed online at: https://arraycgh.shinyapps.io/Copy_Number_Explorer/ https://arraycgh.shinyapps.io/Copy_Number_Explorer_Survival/ Copy Number Explorer is a data mining tool for cancer researchers interested in the structural and copy number changes. Huge volumes of genomics data from nearly every cancer type are now freely available and several online databases have begun to collate and store this information. However, current tools focus on individual gene queries rather than chromosomal and region-based queries more relevant to some researchers. ... -
23
ESBTL (Easy Structural Biology Template Library) is a lightweight C++ library that allows the handling of PDB data and provides a data structure suitable for geometric analysis and advanced constructions.
-
24
SVMerge is a meta structural variation (SV) calling pipeline, which makes SV predictions with a collection of SV callers which are then, merged, and computationally validated using local de novo assembly.
-
25
Protein Contact Matrix Generator
Command line application to generate contact matrix from proteins (3D)
A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand...