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WO2025111582A1 - Aza-tetracyclic oxazepine inhibitors of kras-g12d - Google Patents

Aza-tetracyclic oxazepine inhibitors of kras-g12d Download PDF

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Publication number
WO2025111582A1
WO2025111582A1 PCT/US2024/057158 US2024057158W WO2025111582A1 WO 2025111582 A1 WO2025111582 A1 WO 2025111582A1 US 2024057158 W US2024057158 W US 2024057158W WO 2025111582 A1 WO2025111582 A1 WO 2025111582A1
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compound
pharmaceutically acceptable
stereoisomer
tautomer
atropisomer
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French (fr)
Inventor
Matthew Landry
Christian NILEWSKI
Michael Siu
Craig STIVALA
Yong Wang
Binqing Wei
Bing-Yan Zhu
Melissa Ann ASHLEY
Samantha Alyson GREEN
Lewis John GAZZARD
Steven Do
Nathan Joseph ADAMSON
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Genentech Inc
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Genentech Inc
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D498/00Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms
    • C07D498/22Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms in which the condensed system contains four or more hetero rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents

Definitions

  • Ras is converted from a GDP-bound (Ras GDP ) to a GTP-bound (Ras GTP ) state, as catalyzed by guanine nucleotide exchange factors (GEFs), notably the SOS1 protein.
  • GEFs guanine nucleotide exchange factors
  • Active Ras GTP mediates its diverse growth-stimulating functions through its direct interactions with effectors including Raf, PI3K, and Ral guanine nucleotide dissociation stimulator.
  • the intrinsic GTPase activity of Ras then hydrolyzes GTP to GDP to terminate Ras signaling.
  • the Ras GTPase activity can be further accelerated by its interactions with GTPase-activating proteins (GAPs), including the neurofibromin 1 tumor suppressor.
  • GAPs GTPase-activating proteins
  • Mutant Ras has a reduced GTPase activity, which prolongs its activated state, thereby promoting Ras-dependent signaling and cancer cell survival or growth. Mutation in Ras that affects its ability to interact with GAP or to convert GTP back to GDP will result in a prolonged activation of the protein and consequently a prolonged signal to the cell telling it to continue to grow and divide. Because these signals result in cell growth and division, overactive RAS signaling may ultimately lead to cancer. Mutations in any one of the three main isoforms of RAS (HRas, NRas, or KRas) genes are common events in human tumorigenesis. Among the three Ras isoforms (K, N, and H), KRas is most frequently mutated.
  • a pharmaceutical composition comprising a compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein.
  • a method of treating a cancer comprising a KRas mutation the method comprising administering to a patient having such cancer, a compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein.
  • a method for regulating activity of a KRas mutant protein the method comprising reacting the mutant protein with a compound, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein.
  • a method for inhibiting proliferation of a cell population comprising contacting the cell population with a compound, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein.
  • a method for inhibiting tumor metastasis comprising administering to an individual in need thereof a therapeutically effective amount of the compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein or a pharmaceutical composition as described herein to a subject in need thereof.
  • a method for preparing a labeled KRas G12D mutant protein comprising reacting a KRas G12D mutant protein with a labeled compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, as described here to result in the labeled KRas G12D mutant protein.
  • DETAILED DESCRIPTION Definitions [0017] Disclosed herein are 6-aza tetracyclic oxazepine compounds as described herein or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof and pharmaceutical compositions thereof that, in certain embodiments, are inhibitors or modulators of mutant KRas.
  • such compounds and compositions are inhibitors or modulators of mutant G12D KRas as provided herein.
  • the compounds and compositions described herein are useful in treating diseases and disorders mediated by mutant KRas, including KRas G12D mutations.
  • the disclosure herein provides enumerated embodiments, it is understood that they are not intended to limit the compounds and methods described herein to those embodiments. On the contrary, the disclosure is intended to cover all alternatives, modifications, and equivalents that can be included within the scope of the present disclosure as defined by the claims. [0019] Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art.
  • halogen and halo are used interchangeably and refer to F, Cl, Br or I. Additionally, terms such as “haloalkyl,” are meant to include monohaloalkyl, polyhaloalkyl, and perhaloalkyl.
  • alkyl refers to a saturated linear or branched-chain monovalent hydrocarbon radical.
  • the alkyl radical is one to eighteen carbon atoms (C1-18).
  • the alkyl radical is C 1-12 , C 1-10 , C 1-8 , C 1-6 , C 1-5 , C 1-4 , or C 1-3 .
  • alkyl groups include methyl (Me, –CH 3 ), ethyl (Et, –CH 2 CH 3 ), 1-propyl (n-Pr, n-propyl, –CH 2 CH 2 CH 3 ), 2-propyl (i-Pr, i-propyl, –CH(CH 3 ) 2 ), 1-butyl (n-Bu, n-butyl, –CH 2 CH 2 CH 2 CH 3 ), 2-methyl-1-propyl (i-Bu, i-butyl, – CH2CH(CH3)2), 2-butyl (s-Bu, s-butyl, –CH(CH3)CH2CH3), 2-methyl-2-propyl (t-Bu, t-butyl, – C(CH3)3), 1-pentyl (n-pentyl, –CH2CH2CH2CH2CH3), 2-pentyl (–CH(CH3)CH2CH2CH3), 3-pentyl (– CH(CH
  • alkoxy refers to –O–alkyl.
  • cyano or “nitrile” refers to —C ⁇ N or –CN.
  • haloalkoxy refers to –O–haloalkyl.
  • hydroxy and “hydroxyl” refer to –OH.
  • alkylidene radical is C 1-3 , C 1-2 , or C1.
  • alkenyl refers to linear or branched-chain monovalent hydrocarbon radical with at least one carbon-carbon double bond and includes radicals having "cis" and "trans” orientations, or alternatively, "E” and "Z” orientations.
  • the alkenyl radical is two to eighteen carbon atoms (C 2-18 ).
  • the alkenyl radical is C 2-12 , C 2-10 , C 2-8 , C 2-6 , or C 2-3 .
  • alkynyl refers to a linear or branched monovalent hydrocarbon radical with at least one carbon-carbon, triple bond.
  • the alkynyl radical is two to eighteen carbon atoms (C 2-18 ).
  • the alkynyl radical is C 2-12 , C 2-10 , C 2-8 , C 2-6 , or C 2-3 . Examples include, but are not limited to, ethynyl (–CoCH), prop-1-ynyl (–CoCCH3), prop-2-ynyl (propargyl, –CH2CoCH), but-1-ynyl, but-2-ynyl, and but-3-ynyl.
  • alkylene refers to a saturated, branched, or straight chain hydrocarbon group having two monovalent radical centers derived by the removal of two hydrogen atoms from the same or two different carbon atoms of a parent alkane.
  • the divalent alkylene group is one to eighteen carbon atoms (C 1-18 ).
  • the divalent alkylene group is C 1-12 , C 1-10 , C 1-8 , C1-6, C1-5, C1-4, or C1-3.
  • Example alkylene groups include methylene (–CH2–), 1,1-ethyl (–CH(CH3)–), (1,2-ethyl (–CH2CH2–), 1,1-propyl (–CH(CH2CH3)–), 2,2-propyl (–C(CH3)2–), 1,2- propyl (–CH(CH3)CH2–), 1,3-propyl (–CH2CH2CH2–), 1,1-dimethyleth-1,2-yl (–C(CH3)2CH2–), 1,4- butyl (–CH2CH2CH2CH2–), and the like.
  • Cyclic (ring-containing) moieties comprise atoms bonded together in a ring, and have one or more substituents other than hydrogen atoms bonded to one or more ring atoms. Each atom in the ring defines a vertex of a polygon.
  • Two ring atoms are adjacent to one another in that ring if they are bonded to one another in the ring. In rings having 4 or more ring atoms, adjacent atoms are bonded to one another but to no other atom in the same ring. In a three-membered ring, each atom is necessarily bonded to each other atom in the ring. Two adjacent ring atoms define one “edge” of the ring.
  • Two or more cyclic moieties may join to one another in one of several ways to form ring systems that comprise more than one ring.
  • Two rings are fused to one another if two ring atoms are adjacent to one another in both rings and are shared by both rings. Such rings are said to share an “edge.”
  • Spirocyclic ring systems comprise a pair of rings that share a single vertex. Such systems contain a ring junction at which the two rings share a single ring atom.
  • Bridged ring systems contain at least a pair of rings in which two or more non-adjacent ring atoms are shared by two or more rings.
  • bridgehead The two non-adjacent ring atoms in question are referred to as “bridgehead” atoms and the pair of bridgehead atoms are members of three different rings.
  • Examples of carbocyclic radicals containing bridged bicyclic rings are norbornyl and adamantyl.
  • Chained ring systems contain two or more rings that are joined to one another but do not share any ring atom in common: one ring is a substituent of the other, and vice versa.
  • Each ring in the chained ring system may independently be a carbocycle or a heterocycle and may be aromatic, partially unsaturated or saturated.
  • Biphenyl is an example of a chained ring system.
  • Ring systems may contain pairs of rings that are fused or chained to one another, spiro- joined, or bridged, or in the case of three or more rings, joined in combinations of ways thereof.
  • the term “carbocycle” as used herein refers to aromatic, saturated or unsaturated cyclic univalent hydrocarbon groups having the number of annular (i.e., ring) carbon atoms designated (i.e., C3-10 means three to ten annular carbon atoms). Carbocyclic groups have a single ring (“monocycles”) or more than one ring (“bicycles”, “tricycles”, or polycycles, more generally).
  • carbocycle encompasses radicals having one or more adjacent pairs of ring atoms between which are double bonds, and that, where more than one such double bond is present, the double bonds may or may not form a conjugated system within the ring.
  • carbocycles may be more specifically designated according to whether they are fully saturated (“cycloalkyl”), unsaturated at least in part (“cycloalkenyl”), or fully conjugated, (“aromatic” or “aryl”).
  • Cycloalkyl groups are fully saturated radicals and are derived by the removal of one hydrogen atom from one carbon atom of a parent cycloalkane. Particular cycloalkyl groups are those having from 3 to 12 annular carbon atoms (C 3-12 -cycloalkyl).
  • a preferred cycloalkyl is a monocyclic hydrocarbon having from 3 to 8 annular carbon atoms (a “C 3-8 -cycloalkyl”), or having 3 to 6 carbon atoms (a “C3-6-cycloalkyl”).
  • cycloalkyl is C3-4, C3-5, C3-7, C3-8, C3-10, C3-10, or C5-10.
  • the cycloalkyl group, as a monocycle is C3-4, C3-8, C3-6, or C5-6.
  • the cycloalkyl group, as a spiro system is C 5-12 .
  • the cycloalkyl group, as a bicycle is C 7 -C 12 .
  • Single ring cycloalkyl radicals have formula C n H 2n ⁇ 1 .
  • Examples of cycloalkyl groups include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, and cycloheptyl. Cycloalkenyl groups have one or more double bonds between adjacent ring carbon atoms.
  • Examples of cycloalkenyl groups include 1-cyclohex-1-enyl, and 1-cyclohex-3- enyl.
  • Examples of monocyclic cycloalkyl include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, cyclononyl, cyclodecyl, cycloundecyl and cyclododecyl.
  • Exemplary arrangements of bicyclic cycloalkyls having 7 to 12 ring atoms include, but are not limited to, [4,4], [4,5], [5,5], [5,6] or [6,6] ring systems.
  • Exemplary bridged bicyclic cycloalkyls include, but are not limited to, bicyclo[2.2.1]heptane, bicyclo[2.2.2]octane and bicyclo[3.2.2]nonane.
  • Examples of spirocycloalkyl include, spiro[2.2]pentane, spiro[2.3]hexane, spiro[2.4]heptane, spiro[2.5]octane and spiro[4.5]decane.
  • “Aryl” as used herein refers to a carbocyclic group having an aromatic single ring (e.g., phenyl) or multiple aromatic rings fused to one another (e.g., naphthyl).
  • an aryl group comprises from 6 to 20 carbon atoms, more preferably between 6 to 12 carbon atoms.
  • Particularly preferred aryl groups are those having from 6 to 14 annular carbon atoms (a “C6-14-aryl”).
  • aromatic is used herein as it is typically used in organic chemistry, meaning, with a few understood exceptions, rings and ring systems in which the annular atoms contribute a total of (4n+2) pi electrons to a set of delocalized molecular orbitals, where n is a non-zero positive integer.
  • Typical aryl groups include, but are not limited to, groups derived from fused ring systems that comprise one or more aromatic rings, or conjugated ring systems, such as but not limited to aceanthrylene, acenaphthylene, acephenanthrylene, anthracene, azulene, benzene, chrysene, coronene, fluoranthene, heptaphene, hexacene, hexaphene, as-indacene, s-indacene, indene, naphthalene (hexalene), octacene, octaphene, octalene, ovalene, pentacene, pentalene, pentaphene, perylene, phenalene, phenanthrene, picene, pleiadene, pyrene, pyranthrene, rubicene, tetraphenylene, trip
  • heterocyclic group refers to any mono-, bi-, tricyclic, chained, fused, spiro or bridged, saturated, partially saturated or unsaturated, non-aromatic ring system, having 3 to 20 ring atoms, where the ring atoms are carbon, and at least one atom in the ring or ring system is a heteroatom selected from nitrogen, sulfur or oxygen. If any ring atom of a cyclic system is a heteroatom, that system is a heterocycle, regardless of the point of attachment of the cyclic system to the rest of the molecule.
  • heterocyclyl includes 3-10 ring atoms (“members”) and includes monocycles, bicycles, tricycles, spiro, and bridged ring systems, wherein the ring atoms are carbon, where at least one atom in the ring or ring system is a heteroatom selected from nitrogen, sulfur or oxygen.
  • heterocyclyl includes 4-10 or 5-10 ring atoms.
  • heterocyclyl includes 1 to 4 heteroatoms.
  • heterocyclyl includes 1 to 3 heteroatoms.
  • heterocyclyl includes 3- to 7-membered monocycles having 1-2, 1-3 or 1-4 heteroatoms selected from nitrogen, sulfur or oxygen.
  • heterocyclyl includes 4- to 6-membered monocycles having 1-2, 1-3 or 1-4 heteroatoms selected from nitrogen, sulfur or oxygen.
  • heterocyclyl includes 3-membered monocycles.
  • heterocyclyl includes 4-membered monocycles.
  • heterocyclyl includes 5-6 membered monocycles.
  • a heterocycloalkyl includes at least one nitrogen.
  • the heterocyclyl group includes 0 to 3 double bonds. Any nitrogen or sulfur heteroatom may optionally be oxidized (e.g., NO, SO, SO2), and any nitrogen heteroatom may optionally be quaternized (e.g., [NR4] + Cl-, [NR4] + OH-).
  • Example heterocycles are oxiranyl, aziridinyl, thiiranyl, azetidinyl, oxetanyl, thietanyl, 1,2-dithietanyl, 1,3-dithietanyl, pyrrolidinyl, dihydro-1H-pyrrolyl, dihydrofuranyl, tetrahydrofuranyl, dihydrothienyl, tetrahydrothienyl, imidazolidinyl, piperidinyl, piperazinyl, isoquinolinyl, tetrahydroisoquinolinyl, morpholinyl, thiomorpholinyl, 1,1-dioxo-thiomorpholinyl, dihydropyranyl, tetrahydropyranyl, hexahydrothiopyranyl, hexahydropyrimidinyl, oxazinanyl, thiazinanyl, thi
  • a heterocyclyl group or a heteroaryl group is attached at a carbon atom of the heterocyclyl group or the heteroaryl group.
  • carbon bonded heterocyclyl groups include bonding arrangements at position 2, 3, 4, 5, or 6 of a pyridine ring, position 3, 4, 5, or 6 of a pyridazine ring, position 2, 4, 5, or 6 of a pyrimidine ring, position 2, 3, 5, or 6 of a pyrazine ring, position 2, 3, 4, or 5 of a furan, tetrahydrofuran, thiofuran, thiophene, pyrrole or tetrahydropyrrole ring, position 2, 4, or 5 of an oxazole, imidazole or thiazole ring, position 3, 4, or 5 of an isoxazole, pyrazole, or isothiazole ring, position 2 or 3 of an aziridine ring, position 2, 3, or 4 of an aze
  • the heterocyclyl group or heteroaryl group is N-attached.
  • nitrogen bonded heterocyclyl or heteroaryl groups include bonding arrangements at position 1 of an aziridine, azetidine, pyrrole, pyrrolidine, 2-pyrroline, 3-pyrroline, imidazole, imidazolidine, 2-imidazoline, 3-imidazoline, pyrazole, pyrazoline, 2-pyrazoline, 3-pyrazoline, piperidine, piperazine, indole, indoline, 1H-indazole, position 2 of an isoindole, or isoindoline, position 4 of a morpholine, and position 9 of a carbazole, or ⁇ -carboline.
  • heterocyclic ring may make fused, spiro, or bridged, connections or make any combination of such connections to one or more other rings.
  • Heteroaryl or “heteroaromatic”, as used herein, refers to an aromatic cyclic group having from 1 to 14 ring carbon atoms and at least one ring heteroatom, including but not limited to heteroatoms such as nitrogen, phosphorus, oxygen and sulfur. The term refers to a monovalent heteroaromatic radical derived by the removal of one hydrogen atom from a single ring atom of a parent heteroaromatic ring system.
  • a heteroaryl group may have a single ring (e.g., pyridyl, furyl) or multiple fused rings (e.g., indolizinyl, benzothienyl).
  • Particular heteroaryl groups are 5- to 14- membered rings having 1 to 12 annular (i.e., ring) carbon atoms and 1 to 6 annular (i.e., ring) heteroatoms independently selected from nitrogen, phosphorus, oxygen and sulfur; 5- to 10- membered rings having 1 to 8 annular carbon atoms and 1 to 4 annular heteroatoms independently selected from nitrogen, phosphorus, oxygen and sulfur; and 5-, 6- or 7-membered rings having 1 to 5 annular carbon atoms and 1 to 4 annular heteroatoms independently selected from nitrogen, oxygen and sulfur In one variation, heteroaryl include monocyclic aromatic 5-, 6- or 7-membered rings having from 1 to 6 annular carbon atoms and 1 to 4 annular heteroatoms independently selected from nitrogen, oxygen and sulfur.
  • heteroaryl includes polycyclic aromatic rings having from 1 to 12 annular carbon atoms and 1 to 6 annular heteroatoms independently selected from nitrogen, phosphorus, oxygen and sulfur.
  • Typical heteroaryl groups include, but are not limited to, groups derived from acridine, arsindole, carbazole, p-carboline, chromane, chromene, cinnoline, furan, imidazole, indazole, indole, indoline, indolizine, isobenzofuran, isochromene, isoindole, isoindoline, isoquinoline, isothiazole, isoxazole, naphthyridine, oxadiazole, oxazole, perimidine, phenanthridine, phenanthroline, phenazine, phthalazine, pteridine, purine, pyran, pyrazine, pyrazole, pyr
  • Preferred heteroaryl groups are thiophene, pyrrole, benzothiophene, benzofuran, indole, pyridine, quinoline, imidazole, oxazole and pyrazine, and those derived therefrom.
  • Rings of different categories may be connected to one another, such as by fused, spiro, or bridged, connections, or by combinations thereof. Such a ring system can be referred to as a “mixed” ring system.
  • at least one ring of a multiple ring system can be aromatic on its own, though one or more of the remaining fused rings may be not aromatic.
  • fused ring systems that contain at least one aromatic ring and at least one partially saturated ring include fluorene, indane, and biphenylene.
  • a mixed ring system having more than one ring where at least one ring is aromatic and at least one ring is non-aromatic may be connected to another structure by bonding to either an aromatic ring atom or a non-aromatic ring atom.
  • a heteroaryl group having more than one ring where at least one ring is non-aromatic may be connected to another structure at either an aromatic ring position or at a non-aromatic ring position.
  • heteroatom refers to any atom other than carbon or hydrogen. Typical heteroatoms found in small organic molecules are selected from: nitrogen, oxygen, fluorine, phosphorous, sulfur, chlorine, and bromine. It is understood by those of skill in the art that where the term heteroatom used to denote a member of a ring (e.g., a heteroaromatic ring) then monovalent heteroatoms such as halogen are excluded.
  • “Fused” refers to any ring structure described herein that shares one or more atoms (e.g., carbon or nitrogen atoms) with an existing ring structure in the compounds described herein.
  • Acyl groups include alkanoyl (e.g., acetyl), aroyl (e.g., benzoyl), and heteroaroyl (e.g., pyridinoyl).
  • haloalkyl refers to an alkyl chain in which one or more hydrogen has been replaced by a halogen. Examples of haloalkyls are trifluoromethyl, difluoromethyl, and fluoromethyl.
  • a substituted haloalkyl refers to a haloalkyl having a moiety other than a halogen.
  • haloalkyl refers to a haloalkyl substituted with no moiety other than hydrogen or halogen as described herein.
  • “Carbenyl”, when used as a ring substituent, refers to the moiety C, i.e., a carbon atom double-bonded to a carbon atom in a ring. It means that a single carbon atom replaces two hydrogen (or other monovalent) atoms that are bonded to a ring carbon atom and is therefore bonded to the ring carbon atom via a double bond.
  • Sulfonyl refers to the group -S(O)2R, where R is hydrogen, alkyl, haloalkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, aryl, heteroalkyl or heteroaryl, each of which may be optionally substituted, as defined herein.
  • R is -H, C1-C6alkyl, or C1-C6haloalkyl.
  • Carboxyalkyl refers to an alkyl group terminating with a carboxylic acid moiety. Examples of carboxyalkyl, include but are not limited to carboxymethyl, carboxyethyl, carboxypropyl and the like. For example, “carboxy-C1alkyl” refers to the moiety -C(O)2H.
  • a wavy line “ ” that intersects a bond in a chemical structure indicates the point of attachment of the atom to which the wavy bond is connected in the chemical structure to the remainder of a molecule, or to the remainder of a fragment of a molecule.
  • divalent groups are described generically without specific bonding configurations. It is understood that the generic description is meant to include both bonding configurations, unless specified otherwise.
  • R 1 –R 2 –R 3 if the group R 2 is described as –CH2C(O)–, then it is understood that this group can be bonded both as R 1 –CH2C(O)– R 3 , and as R 1 –C(O)CH 2 –R 3 , unless specified otherwise.
  • pharmaceutically acceptable refers to molecular entities and compositions that do not produce an adverse, allergic or other untoward reaction when administered to an animal, such as, for example, a human, as appropriate.
  • Compounds described herein may be in the form of a salt, such as a pharmaceutically acceptable salt. “Pharmaceutically acceptable salts” include both acid and base addition salts.
  • “Pharmaceutically acceptable acid addition salt” refers to those salts which retain the biological effectiveness and properties of the free bases and which are not biologically or otherwise undesirable, formed with inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, carbonic acid, phosphoric acid and the like, and organic acids may be selected from aliphatic, cycloaliphatic, aromatic, araliphatic, heterocyclic, carboxylic, and sulfonic classes of organic acids such as formic acid, acetic acid, propionic acid, glycolic acid, gluconic acid, lactic acid, pyruvic acid, oxalic acid, malic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, aspartic acid, ascorbic acid, glutamic acid, anthranilic acid, benzoic acid, cinnamic acid, mandelic acid, embonic acid, phenylacetic acid, methanesul
  • base addition salts include those derived from inorganic bases such as sodium, potassium, lithium, ammonium, calcium, magnesium, iron, zinc, copper, manganese, aluminum salts and the like. Particular base addition salts are the ammonium, potassium, sodium, calcium and magnesium salts.
  • Salts derived from pharmaceutically acceptable organic nontoxic bases include salts of primary, secondary, and tertiary amines, substituted amines including naturally occurring substituted amines, cyclic amines and basic ion exchange resins, such as isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, ethanolamine, 2- diethylaminoethanol, tromethamine, dicyclohexylamine, lysine, arginine, histidine, caffeine, procaine, hydrabamine, choline, betaine, ethylenediamine, glucosamine, methylglucamine, theobromine, purines, piperazine, piperidine, N-ethylpiperidine, polyamine resins and the like.
  • basic ion exchange resins such as isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, ethanolamine, 2- diethyla
  • a salt is selected from a hydrochloride, hydrobromide, trifluoroacetate, sulfate, phosphate, acetate, fumarate, maleate, tartrate, lactate, citrate, pyruvate, succinate, oxalate, methanesulfonate, p-toluenesulfonate, bisulfate, benzenesulfonate, ethanesulfonate, malonate, xinafoate, ascorbate, oleate, nicotinate, saccharinate, adipate, formate, glycolate, palmitate, L-lactate, D-lactate, aspartate, malate, L-tartrate, D-tartrate, stearate, furo
  • a “sterile” formulation is aseptic or free from all living microorganisms and their spores.
  • stereoisomers refer to compounds that have identical chemical constitution but differ with regard to the arrangement of the atoms or groups in space. Stereoisomers include diastereomers, enantiomers, atropisomers, conformers and the like.
  • chiral refers to molecules that have the property of non-superimposability of the mirror image partner, while the term “achiral” refers to molecules which are superimposable on their mirror image partner.
  • diastereomer refers to a stereoisomer with two or more centers of chirality and whose molecules are not mirror images of one another. Diastereomers have different physical properties, e.g., melting points, boiling points, spectral properties or biological activities. Mixtures of diastereomers may separate under high resolution analytical procedures such as electrophoresis and chromatography such as HPLC.
  • enantiomers refers to two stereoisomers of a compound that are non- superimposable mirror images of one another.
  • atropisomers refers to two conformers resulting from hindered rotation about a single bond where the steric strain barrier to rotation can be high enough to allow for the isolation of each conformer.
  • Stereochemical definitions and conventions used herein generally follow S. P. Parker, Ed., McGraw-Hill Dictionary of Chemical Terms (1984) McGraw-Hill Book Company, New York; and Eliel, E. and Wilen, S., “Stereochemistry of Organic Compounds”, John Wiley & Sons, Inc., New York, 1994. Many organic compounds exist in optically active forms, i.e., they have the ability to rotate the plane of plane-polarized light.
  • the prefixes D and L, or R and S are used to denote the absolute configuration of the molecule about its chiral center(s).
  • the prefixes d and l or (+) and (-) are employed to designate the sign of rotation of plane- polarized light by the compound, with (-) or 1 meaning that the compound is levorotatory.
  • a compound prefixed with (+) or d is dextrorotatory.
  • these stereoisomers are identical except that they are mirror images of one another.
  • a specific stereoisomer may also be referred to as an enantiomer, and a mixture of such isomers is often called an enantiomeric mixture.
  • a 50:50 mixture of enantiomers is referred to as a racemic mixture or a racemate, which may occur where there has been no stereoselection or stereospecificity in a chemical reaction or process.
  • the terms “racemic mixture” and “racemate” refer to an equimolar mixture of two enantiomeric species, devoid of optical activity.
  • the term “tautomer” or “tautomeric form” refers to structural isomers of different energies that are interconvertible via a low energy barrier.
  • proton tautomers also known as prototropic tautomers
  • Valence tautomers include interconversions by reorganization of some of the bonding electrons.
  • Certain compounds described herein can exist in unsolvated forms as well as solvated forms, including hydrated forms.
  • a “solvate” refers to an association or complex of one or more solvent molecules and a compound described herein. Examples of solvents that form solvates include water, isopropanol, ethanol, methanol, DMSO, ethyl acetate, acetic acid, and ethanolamine.
  • Certain compounds described herein can exist in multiple crystalline or amorphous forms. In general, all physical forms are contemplated herein.
  • the term "hydrate” refers to the complex where the solvent molecule is water.
  • the compounds and pharmaceutically acceptable salts thereof described herein also embrace isotopically-labeled compounds that are identical to those recited herein, but for the fact that one or more atoms are replaced by an atom having an atomic mass or mass number different from the atomic mass or mass number usually found in nature. All isotopes of any particular atom or element as specified are contemplated herein, and their uses.
  • Exemplary isotopes that can be incorporated into compounds and pharmaceutically acceptable salts thereof described herein include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorus, sulfur, fluorine, chlorine and iodine, such as 2 H, 3 H, 11 C, 13 C, 14 C, 13 N, 15 N, 15 O, 17 O, 18 O, 32 P, 33 P, 35 S, 18 F, 36 Cl, 123 I, and 125 I.
  • Certain isotopically-labeled compounds or pharmaceutical acceptable salts thereof described herein are useful in compound and/or substrate tissue distribution assays.
  • Tritiated ( 3 H) and carbon-14 ( 14 C) isotopes are useful for their ease of preparation and detectability. Further, substitution with heavier isotopes such as deuterium (i.e., 2 H) may afford certain therapeutic advantages resulting from greater metabolic stability (e.g., increased in vivo half-life or reduced dosage requirements) and hence may be preferred in some circumstances.
  • Positron emitting isotopes such as 15 O, 13 N, 11 C and 18 F are useful for positron emission tomography (PET) studies to examine substrate receptor occupancy.
  • Isotopically labeled compounds or pharmaceutical acceptable salts thereof described herein can generally be prepared by following procedures analogous to those disclosed in the Examples herein below, by substituting an isotopically labeled reagent for a non- isotopically labeled reagent.
  • Compounds and pharmaceutically acceptable salts thereof described herein may contain one or more asymmetric carbon atoms. Accordingly, the compounds may exist as diastereomers, enantiomers or mixtures thereof.
  • the syntheses of the compounds may employ racemates, diastereomers or enantiomers as starting materials or as intermediates. Mixtures of particular diastereomeric compounds may be separated, or enriched in one or more particular diastereomers, by chromatographic or crystallization methods.
  • enantiomeric mixtures may be separated, or enantiomerically enriched, using the same techniques or others known in the art.
  • Each of the asymmetric carbon or nitrogen atoms may be in the R or S configuration and both of these configurations are contemplated herein.
  • all stereoisomers are contemplated and included.
  • stereochemistry is specified by a solid wedge or dashed line representing a particular configuration, then that stereoisomer is so specified and defined. Unless otherwise specified, if solid wedges or dashed lines are used, relative stereochemistry is intended.
  • a “subject,” “individual,” or “patient” is a vertebrate and are used interchangeably herein.
  • the vertebrate is a mammal. Mammals include, but are not limited to, farm animals (such as cows), sport animals, pets (such as guinea pigs, cats, dogs, rabbits and horses), primates, mice and rats.
  • a mammal is a human.
  • the patient is typically in need thereof.
  • the terms “inhibiting” and “reducing,” or any variation of these terms includes any measurable decrease or complete inhibition to achieve a desired result.
  • treatment refers to clinical intervention designed to alter the natural course of the patient or cell being treated during the course of clinical pathology. Desirable effects of treatment include decreasing the rate of disease progression, ameliorating or palliating the disease state, and remission or improved prognosis.
  • a patient is successfully “treated” if one or more symptoms associated with a cancer described herein are mitigated or eliminated, including, but are not limited to, reducing the proliferation of (or destroying) cancerous cells, decreasing symptoms resulting from the disease, increasing the quality of life of those suffering from the disease, decreasing the dose of other medications required to treat the disease, and/or prolonging survival of patients.
  • the term “delaying progression” of a disease refers to deferring, hindering, slowing, retarding, stabilizing, and/or postponing development of a cancer described herein. This delay can be of varying lengths of time, depending on the history of the cancer and/or patient being treated.
  • a “mutant KRas mediated disease” and the like refer to a disease described herein (e.g., a cancer described herein) having symptoms or requiring treatment as set forth herein that is/are wholly or partly associated with, a result of, a function of, or otherwise correlated to mutant KRas activity as described herein.
  • the mutant KRas is KRas G12D .
  • An “effective amount” or “therapeutically effective amount” is at least the minimum amount required to effect a measurable improvement or prevention of a cancer described herein.
  • An effective amount herein may vary according to factors such as the disease state, age, sex, and weight of the patient, and the ability of the agent to elicit a desired response in the patient.
  • An effective amount is also one in which any toxic or detrimental effects of the treatment are outweighed by the therapeutically beneficial effects.
  • Beneficial or desired results include results such as eliminating or reducing the risk, lessening the severity, delaying the onset of the disease (including biochemical, histological and/or behavioral symptoms of the disease, its complications and intermediate pathological phenotypes presenting during development of the disease), decreasing one or more symptoms resulting from the disease, increasing the quality of life of those suffering from the disease, decreasing the dose of other medications required to treat the disease, enhancing effect of another medication such as via targeting, delaying the progression of the disease, and/or prolonging survival.
  • an effective amount of the drug may have the effect in reducing the number of cancer cells; reducing the tumor size; inhibiting (i.e., slow or stop) cancer cell infiltration into peripheral organs; inhibit (i.e., slow or stop) tumor metastasis; inhibiting (i.e., slow or stop) tumor growth; and/or relieving one or more of the symptoms associated with the disorder.
  • An effective amount can be administered in one or more administrations.
  • Co- administration includes simultaneous administration in separate compositions, administration at different times (i.e., sequential administration) in separate compositions, or administration in a composition in which both agents are present.
  • packet insert is used to refer to instructions customarily included in commercial packages of therapeutic products, that contain information about the indications, usage, dosage, administration, contraindications and/or warnings concerning the use of such therapeutic products.
  • antagonist and “inhibitor” are used interchangeably, and they refer to a compound having the ability to inhibit a biological function of a target protein, whether by inhibiting the activity or expression of the protein, such as a mutant form of KRas.
  • the terms “antagonist” and “inhibitors” are defined in the context of the biological role of the target protein. While preferred antagonists herein specifically interact with (e.g., bind to) the target, compounds that inhibit a biological activity of the target protein by interacting with other members of the signal transduction pathway of which the target protein is a member are also specifically included within this definition. A preferred biological activity inhibited by an antagonist is associated with the development, growth, or spread of a tumor.
  • agonist refers to a compound having the ability to initiate or enhance a biological function of a target protein, whether by inhibiting the activity or expression of the target protein. Accordingly, the term “agonist” is defined in the context of the biological role of the target polypeptide.
  • cancer specifically interact with (e.g., bind to) the target
  • compounds that initiate or enhance a biological activity of the target polypeptide by interacting with other members of the signal transduction pathway of which the target polypeptide is a member are also specifically included within this definition.
  • cancer and “cancerous”, “neoplasm”, and “tumor” and related terms are used interchangeably herein and refer to or describe the physiological condition in mammals that is typically characterized by unregulated cell growth.
  • a “tumor” comprises one or more cancerous cells.
  • cancers include carcinoma, blastoma, sarcoma, seminoma, glioblastoma, melanoma, leukemia, and myeloid or lymphoid malignancies. More particular examples of such cancers include squamous cell cancer (e.g., epithelial squamous cell cancer) and lung cancer including small-cell lung cancer, non-small cell lung cancer (“NSCLC”), adenocarcinoma of the lung and squamous carcinoma of the lung.
  • squamous cell cancer e.g., epithelial squamous cell cancer
  • lung cancer including small-cell lung cancer, non-small cell lung cancer (“NSCLC”), adenocarcinoma of the lung and squamous carcinoma of the lung.
  • NSCLC non-small cell lung cancer
  • cancers include skin, keratoacanthoma, follicular carcinoma, hairy cell leukemia, buccal cavity, pharynx (oral), lip, tongue, mouth, salivary gland, esophageal, larynx, hepatocellular, gastric, stomach, gastrointestinal, small intestine, large intestine, pancreatic, cervical, ovarian, liver, bladder, hepatoma, breast, colon, rectal, colorectal, genitourinary, biliary passage, thyroid, papillary, hepatic, endometrial, uterine, salivary gland, kidney or renal, prostate, testis, vulval, peritoneum, anal, penile, bone, multiple myeloma, B-cell lymphoma, diffuse large B-Cell lymphoma (DLBCL), central nervous system, brain, head and neck, Hodgkin’s, and associated metastases.
  • DLBCL diffuse large B-Cell lymphoma
  • neoplastic disorders include myeloproliferative disorders, such as polycythemia vera, essential thrombocytosis, myelofibrosis, such as primary myelofibrosis, and chronic myelogenous leukemia (CML).
  • a "chemotherapeutic agent” is an agent useful in the treatment of a given disorder, for example, cancer or inflammatory disorders. Examples of chemotherapeutic agents are well-known in the art. Additionally, chemotherapeutic agents include pharmaceutically acceptable salts, acids or derivatives of any of chemotherapeutic agents, as well as combinations of two or more of them.
  • structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms.
  • Exemplary isotopes that can be incorporated into compounds and pharmaceutically acceptable salts thereof described herein include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorus, sulfur, fluorine, chlorine, and iodine, such as 2 H, 3 H, 11 C, 13 C, 14 C, 13 N, 15 N, 15 O, 17 O, 18 O, 32 P, 33 P, 35 S, 18 F, 36 Cl, 123 I, and 125 I, respectively.
  • Isotopically-labeled compounds can be useful in compound or substrate tissue distribution assays.
  • Tritiated (i.e., 3 H) and carbon-14 (i.e., 14 C) isotopes can be useful for their ease of preparation and detectability. Further, substitution with heavier isotopes such as deuterium (i.e., 2 H) may afford certain therapeutic advantages resulting from greater metabolic stability (e.g., increased in vivo half-life or reduced dosage requirements).
  • one or more carbon atoms are replaced by 13 C- or 14 C-enriched carbon.
  • Positron emitting isotopes such as 15 O, 13 N, 11 C, and 18 F are useful for positron emission tomography (PET) studies to examine substrate receptor occupancy.
  • Isotopically labeled compounds can generally be prepared by following procedures analogous to those disclosed in the Schemes or in the Examples herein, by substituting an isotopically labeled reagent for a non-isotopically labeled reagent. [0093] It is specifically contemplated that any limitation discussed with respect to one embodiment provided herein may apply to any other embodiment provided herein.
  • any compound and pharmaceutically acceptable salts thereof described herein or composition described herein may be used in any method provided herein, and any method provided herein may be used to produce or to utilize any compound and pharmaceutically acceptable salts thereof described herein or composition described herein.
  • the term “about” is used to indicate that a value includes the standard deviation of error for the device or method being employed to determine the value.
  • Compounds described herein may have stereochemistry depicted as follows: It is understood that all three stereochemical depictions above are equivalent as set forth herein.
  • a compound having the structure of formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; wherein Y 1 is N or CR 01 , Y 2 is N or CR 02 , Y 3 is N or CR 03 ; and each of R 01 , R 02 , R 03 , R 04 , and R 05 is independently hydrogen, halogen, -CN, -NH 2 , -N(Me) 2 , C 1- 3 alkyl, C 1-3 haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is -NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen,
  • provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NR 12 -.
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein m is 0, n is 1, and p is 1.
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein no more than one of R01, R02, R03, R04, and R05 is hydrogen.
  • provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein no more than two of R 01 , R 02 , R 03 , R 04 , and R 05 is hydrogen.
  • provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R01, R02, R03, R04, and R05 is C1-3haloalkyl.
  • provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R 01 , R 02 , R 03 , R 04 , and R 05 is C 1-3 alkyl.
  • provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R 1 is: [0102] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R 1 is: [0103] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R1 is: .
  • provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R2 is fluoro.
  • R4’ is hydrogen and R4” is methyl.
  • provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R 4 ’ is hydrogen and R 4 ” is -CF 3 .
  • provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R4’ and R4” are both methyl.
  • provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R 4 ’ is hydrogen and R 4 ” is -CH 2 OH.
  • R 4 ’ is hydrogen and R 4 ” is -CH 2 OH.
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein, when present, at least one of R10 is selected from -NH2, -NHR11, -N(R11)2, -R11-NH2, -R11-NH-R11, -R11-N(R11)2.
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein R 5 and R 6 together with the nitrogen atom to which they are both bonded form Q; and Q is a 3-10 membered monocyclic ring optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R11)2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, C1- 6 haloalkoxy-C 1-6 alkyl, cyano-C 1-6 alkyl, hydroxy-C 1-6 alkyl, oxo, carboxy-C 1-6 alkyl, and C 1-6 haloalkyl.
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein R 5 and R 6 together with the nitrogen atom to which they are both bonded form Q; and Q is a 3-10 membered monocyclic ring optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R11)2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, hydroxy-C 1-6 alkyl, oxo, carboxy-C 1-6 alkyl, and C 1-6 haloalkyl.
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein R 5 and R 6 together with the nitrogen atom to which they are both bonded form an azetidine ring, a pyrrolidine ring, a piperazine ring, or a morpholine ring, optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R11)2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C 1-6 alkoxy, C 1-6 alkyl, C 1-6 alkoxy-C 1-6 alkyl, C 1-6 haloalkoxy-C 1-6 alkyl, cyano-C 1-6 alkyl, hydroxy-C 1- 6 alkyl, oxo, carboxy-C 1-6 alkyl, and C 1-6 halo
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring, a pyrrolidine ring, a piperazine ring, or a morpholine ring, optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R11)2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C 1-6 alkoxy, C 1-6 alkyl, C 1-6 alkoxy-C 1-6 alkyl, hydroxy-C 1-6 alkyl, oxo, carboxy-C 1-6 alkyl, and C 1- 6 haloalkyl.
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring optionally substituted with one or more R 10 groups independently selected from sulfonyl, cyano, halo, -N(R 11 ) 2 , -R 11 -NH-R 11 , - R 11 -N(R 11 ) 2 , hydroxyl, C 1-6 alkoxy, C 1-6 alkyl, C 1-6 alkoxy-C 1-6 alkyl, C 1-6 haloalkoxy-C 1-6 alkyl, cyano- C 1-6 alkyl, hydroxy-C 1-6 alkyl, oxo, carboxy-C 1-6 alkyl, and halo-C 1-6 alkyl.
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R 11 ) 2 , -R 11 -NH-R 11 , - R 11 -N(R 11 ) 2 , hydroxyl, C 1-6 alkoxy, C 1-6 alkyl, C 1-6 alkoxy-C 1-6 alkyl, hydroxy-C 1-6 alkyl, oxo, carboxy- C 1-6 alkyl, and halo-C 1-6 alkyl.
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a pyrrolidine ring optionally substituted with one or more groups selected from -N(R11)2, hydroxyl, C1-6alkyl, hydroxy-C 1-6 alkyl, oxo, and carboxy-C 1-6 alkyl.
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein R 5 and R 6 together with the nitrogen atom to which they are both bonded form a pyrrolidine ring.
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein R5 and R 6 together with the nitrogen atom to which they are both bonded form a piperazine ring optionally substituted with one or more oxo groups.
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein R 5 and R 6 together with the nitrogen atom to which they are both bonded form 3-10 membered two chained rings optionally substituted with one or more R 10 groups independently selected from halo, C1-6alkoxy, C1-6alkyl, and hydroxy-C1-6alkyl.
  • both rings of the two chained rings are saturated.
  • both rings of the two chained rings are heterocycles.
  • both rings of the two chained rings are saturated heterocycles, each independently comprising 1-3 ring heteroatoms independently selected from the group consisting of N, O, and S.
  • one ring of the two chained rings is saturated and the other is a heteroaryl.
  • one ring of the two chained rings is azetidine
  • the second ring is a saturated heterocycle or heteroaryl, each comprising 1-3 ring heteroatoms independently selected from the group consisting of O and N.
  • the first ring is azetidine
  • the second ring is azetidine, morpholine, triazole, or thietane dioxide.
  • the first ring is azetidine
  • the second ring is azetidine or morpholine.
  • the rings may be independently unsubstituted or substituted with one or more R10 groups independently selected from halo, C1- 6alkoxy, C1-6alkyl, and hydroxy-C1-6alkyl; such as unsubstituted or substituted with 1-3 R10 groups.
  • a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein R 5 and R6 together with the nitrogen atom to which they are both bonded form a 3-10 membered spirocyclic ring optionally substituted with one or more R10 groups independently selected from hydroxyl, C1-6alkyl, and oxo.
  • the spirocyclic ring is saturated.
  • the spirocylic ring comprises 1-3 annular heteroatoms independently selected from the group consisting of O, N, and S.
  • the spirocyclic ring is a 3- 10 membered, saturated spirocyclic ring comprising 1-3 annular N atoms.
  • provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R 10 is dimethylamino.
  • a compound having the structure of formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; , wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, CN, NH2, N(Me)2, C1- 3 alkyl, C 1-3 haloalkyl, or cyclopropyl, and wherein at least one of R 01 , R 02 , R 03 , R 04 , and R 05 is NH 2 , and at least one of R 01 , R 02 , R03, R04, and R05 is methyl; R2 is hydrogen, cyano,
  • a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R 01 , R 02 , R 03 , R 04 , and R 05 is independently hydrogen, halogen, CN, NH 2 , N(Me) 2 , C 1- 3 alkyl, C 1-3 haloalkyl, or cyclopropyl, and wherein at least one of R 01 , R 02 , R 03 , R 04 , and R 05 is NH 2 , and at least one of R 01 , R 02 , R 03 , R 04 , and R05 is methyl; R2 is hydrogen
  • provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NR12-.
  • a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein no more than one of R 01 , R 02 , R 03 , R 04 , and R 05 is hydrogen.
  • provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein no more than two of R01, R02, R03, R04, and R05 is hydrogen.
  • provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R 01 , R 02 , R 03 , R 04 , and R 05 is C1-3-haloalkyl.
  • provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R 1 is: , [0130] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R1 is: [0131] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R1 is .
  • provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R 2 is fluoro.
  • provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein each R4' is hydrogen and R4'' is methyl.
  • a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein each R 4 ' is hydrogen and R 4 '' is -CF 3 .
  • provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein J is R 8 .
  • a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein L2 is a bond or –(CHR13)q–. In some embodiments, L2 is a bond. In some embodiments, L2 is – (CHR13)q–. In some embodiments, Z2 is –O-Q, –O-CH2-Q, –O-CH2CH2-Q, or –O-CH2CH2CH2- Q. In some embodiments, Z 2 is –O-CH 2 -Q. In some embodiments, Z 2 is –O-CH 2 CH 2 -Q.
  • Z 2 is –O-Q. In some embodiments, Z 2 is –O-CH 2 -Cy, or –O-CH 2 CH 2 -Cy. In some embodiments, Z 2 is –O-CH 2 -Cy. In some embodiments, Z 2 is –O-CH 2 CH 2 -Cy.
  • a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein Q is selected from: cyclopropane, cyclobutane, cyclohexane, benzene, pyrrolidine, piperidine, morpholine, pyridine, pyridone, pyridazine, pyrazine, pyrimidine, 1,4-dioxane, 1H-pyrazole, isoindoline-1,3-dione, 2-oxabicyclo[2.1.1]hexane, tetrahydrofuran, oxetane, tetrahydropyran, thietane, 2,3-dihydrobenzofuran, iso-oxazole, bicyclo[1.1.1]pentane, 6,7-dihydro-5H- pyrrolo[1,2-a]
  • R 14 is C 1-6 alkyl optionally substituted by one or more groups selected from hydroxyl, halogen, and oxo.
  • R13 is hydrogen and R14 is C1-6alkyl.
  • Q is selected from: cyclopropane, cyclobutane, cyclohexane, benzene, pyrollidine, piperidine, morpholine, pyridine, pyridone, pyridazine, pyrazine, pyrimidine, 1,4-dioxane, 1H-pyrazole, isoindoline-1,3-dione, 2-oxabicyclo[2.1.1]hexane, tetrahydrofuran, oxetane, tetrahydropyran
  • a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein Q is selected from: cyclopropane, cyclobutane, cyclohexane, benzene, pyrollidine, piperidine, morpholine, pyridine, pyridazine, pyrazine, pyrimidine, 1,4-dioxane, 1H-pyrazole, isoindoline-1,3-dione, 2- oxabicyclo[2.1.1]hexane, tetrahydrofuran, oxetane, tetrahydropyran, thietane, 2,3- dihydrobenzofuran, iso-oxazole, bicyclo[1.1.1]pentane, 6,7-dihydro-5H-pyrrolo[1,2-a]imidazole, imi
  • a compound having the structure of formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; wherein Y 1 is N or CR 01 , Y 2 is N or CR 02 , Y 3 is N or CR 03 ; and each of R 01 , R 02 , R 03 , R 04 , and R 05 is independently hydrogen, halogen, CN, NH 2 , N(Me) 2 , C 1- 3 alkyl, C 1-3 haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, hal
  • provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NR 12 -.
  • provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NH-.
  • provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein no more than one of R01, R02, R03, R04, and R05 is hydrogen.
  • provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R01, R02, R03, R04, and R05 is halogen.
  • provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R 01 , R 02 , R 03 , R 04 , and R 05 is amino.
  • provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R1 is: [0150] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R1 is: , [0151] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein [0152] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R 2 is fluoro.
  • provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R 3 ' and R 3 '' are both H.
  • provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein each R4' is hydrogen and R4'' is methyl.
  • a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein J is C1-6alkyl-NR8R9 optionally substituted with one or more groups independently selected from halogen and hydroxy.
  • a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein J is C 1-6 alkyl-NR 8 R 9 .
  • provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein J is NR8R9.
  • a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein Q is cyclopropyl optionally substituted with one or more halogen. In some embodiments, Q is cyclopropyl.
  • a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof wherein each of R 8 and R 9 is independently hydrogen or C 1-6 alkyl optionally substituted with oxo, halogen, C 1-6 alkoxy, and 5-6 membered heterocyclyl.
  • a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein q 1.
  • the compound is a compound as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • Table 1 [0164]
  • the compound is selected from the group consisting of compounds 1-262 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 1-182 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. In some embodiments, the compound is selected from the group consisting of compounds 183-262 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 1-7, 46-55, 75-79, 82-97, 194-214, 223-227, 229-230, 233-238, 243, 245, 248-249, 251-253, and 255-262 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 1-7, 46-55, 75-79, and 82-97 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 194-214, 223-227, 229-230, 233-238, 243, 245, 248-249, 251-253, and 255-262 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 8-31, 33-39, 66-67, 73-74, 98-177, 179-182, 183-192, 215-222, 228, 231-232, 239-242, 244, 246- 247, 250, and 254 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 8-31, 33-39, 66-67, 73-74, and 98-177, 179-182 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 183-192, 215-222, 228, 231-232, 239-242, 244, 246-247, 250, and 254 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 56-65, 68-72, 80-81, and 178 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 1-7, 83-89, and 97 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 40 and 41 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 42-45 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 46-48, 79, 90, and 93-94 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 49-55, 75-78, 82, 91-92, and 95-96 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • the compound is selected from the group consisting of compounds 1, 26, 39, 56, 64, 65, 70, 71, 75, 76, and 97 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • Synthesis of Compounds [0174] Compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein of the present disclosure can be made by a variety of methods depicted in the illustrative synthetic reaction schemes shown and described below.
  • the starting materials and reagents used in preparing these compounds generally are either available from commercial suppliers, such as Aldrich Chemical Co., or are prepared by methods known to those skilled in the art following procedures set forth in references such as Fieser and Fieser’s Reagents for Organic Synthesis; Wiley & Sons: New York, vol.1-21; R. C. LaRock, Comprehensive Organic Transformations, 2 nd edition Wiley-VCH, New York 1999; Comprehensive Organic Synthesis, B. Trost and I. Fleming (Eds.) vol.1-9 Pergamon, Oxford, 1991; Comprehensive Heterocyclic Chemistry, A. R. Katritzky and C. W.
  • Compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein described herein can be prepared singly or as compound libraries comprising at least 2, for example 5 to 1,000 compounds, or 10 to 100 compounds.
  • Libraries of compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein of the formulae described herein can be prepared by a combinatorial split and mix approach or by multiple parallel syntheses using, for example, either solution phase or solid phase chemistry.
  • a compound library comprising at least 2 compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein.
  • the Examples provide exemplary methods for preparing compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein.
  • Those skilled in the art will appreciate that other synthetic routes can be used to synthesize the compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein described herein.
  • specific starting materials and reagents are depicted and discussed in the Examples, other starting materials and reagents can be substituted to provide a variety of derivatives and/or reaction conditions.
  • many of the exemplary compounds prepared by the described methods can be further modified in light of this disclosure using conventional chemistry.
  • reaction products from one another and/or from starting materials.
  • the desired products of each step or series of steps are separated and/or purified to the desired degree of homogeneity by the techniques common in the art. Typically, such separations involve multiphase extraction, crystallization from a solvent or solvent mixture, distillation, sublimation, or chromatography.
  • Chromatography can involve any number of methods including, for example: reverse-phase and normal phase; size exclusion; ion exchange; high, medium and low pressure liquid chromatography methods and apparatus; small scale analytical; simulated moving bed (SMB) and preparative thin or thick layer chromatography, as well as techniques of small scale thin layer and flash chromatography.
  • Another class of separation methods involves treatment of a mixture with a reagent selected to bind to or render otherwise separable a desired product, unreacted starting material, reaction by product, or the like.
  • reagents include adsorbents or absorbents such as activated carbon, molecular sieves, ion exchange media, or the like.
  • the reagents can be acids in the case of a basic material, bases in the case of an acidic material, binding reagents such as antibodies, binding proteins, selective chelators such as crown ethers, liquid/liquid ion extraction reagents (LIX), or the like. Selection of appropriate methods of separation depends on the nature of the materials involved, such as, boiling point and molecular weight in distillation and sublimation, presence or absence of polar functional groups in chromatography, stability of materials in acidic and basic media in multiphase extraction, and the like. [0181] Diastereomeric mixtures can be separated into their individual diastereomers on the basis of their physical chemical differences by methods such as by chromatography and/or fractional crystallization.
  • Enantiomers can be separated by converting the enantiomeric mixture into a diastereomeric mixture by reaction with an appropriate optically active compound (e.g., chiral auxiliary such as a chiral alcohol or Mosher’s acid chloride), separating the diastereomers and converting (e.g., hydrolyzing) the individual diastereoisomers to the corresponding pure enantiomers. Also, some of the compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein described herein can be atropisomers (e.g., substituted biaryls). Enantiomers can also be separated by use of a chiral HPLC column.
  • an appropriate optically active compound e.g., chiral auxiliary such as a chiral alcohol or Mosher’s acid chloride
  • converting e.g., hydrolyzing
  • a single stereoisomer, e.g., an enantiomer, substantially free of its stereoisomer can be obtained by resolution of the racemic mixture using a method such as formation of diastereomers using optically active resolving agents (Eliel, E. and Wilen, S. “Stereochemistry of Organic Compounds,” John Wiley & Sons, Inc., New York, 1994; Lochmuller, C. H., (1975) J. Chromatogr., 113(3):283-302).
  • Racemic mixtures of chiral compounds or pharmaceutically acceptable salts thereof described herein can be separated and isolated by any suitable method, including: (1) formation of ionic, diastereomeric salts with chiral compounds and separation by fractional crystallization or other methods, (2) formation of diastereomeric compounds with chiral derivatizing reagents, separation of the diastereomers, and conversion to the pure stereoisomers, and (3) separation of the substantially pure or enriched stereoisomers directly under chiral conditions. See: “Drug Stereochemistry, Analytical Methods and Pharmacology,” Irving W. Wainer, Ed., Marcel Dekker, Inc., New York (1993).
  • diastereomeric salts can be formed by reaction of enantiomerically pure chiral bases such as brucine, quinine, ephedrine, strychnine, a-methyl-b-phenylethylamine (amphetamine), and the like with asymmetric compounds bearing acidic functionality, such as carboxylic acid and sulfonic acid.
  • the diastereomeric salts can be induced to separate by fractional crystallization or ionic chromatography.
  • the substrate to be resolved is reacted with one enantiomer of a chiral compound to form a diastereomeric pair (E. and Wilen, S. “Stereochemistry of Organic Compounds”, John Wiley & Sons, Inc., 1994, p.322).
  • Diastereomeric compounds can be formed by reacting asymmetric compounds with enantiomerically pure chiral derivatizing reagents, such as menthyl derivatives, followed by separation of the diastereomers and hydrolysis to yield the pure or enriched enantiomer.
  • a method of determining optical purity involves making chiral esters, such as a menthyl ester, e.g., (-) menthyl chloroformate in the presence of base, or Mosher ester, a-methoxy- a-(trifluoromethyl)phenyl acetate (Jacob III. J. Org. Chem.
  • Enriched or purified enantiomers can be distinguished by methods used to distinguish other chiral molecules with asymmetric carbon atoms, such as optical rotation and circular dichroism.
  • the chemical reactions described herein may be readily adapted to prepare other compounds and pharmaceutically acceptable salts thereof described herein.
  • the synthesis of non-exemplified compounds and pharmaceutically acceptable salts thereof described herein may be successfully performed by modifications apparent to those skilled in the art, e.g., by appropriately protecting interfering groups, by utilizing other suitable reagents known in the art other than those described, or by making routine modifications of reaction conditions.
  • other reactions disclosed herein or known in the art will be recognized as having applicability for preparing other compounds and pharmaceutically acceptable salts thereof described herein.
  • compositions comprising compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein and one or more pharmaceutically acceptable excipients.
  • Compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein as described herein can be formulated in accordance with standard pharmaceutical practice as a pharmaceutical composition.
  • a pharmaceutical composition comprising a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein as described herein and one or more pharmaceutically acceptable excipients.
  • a typical formulation is prepared by mixing a compound or pharmaceutically acceptable salt thereof as described herein and an excipient.
  • Suitable carriers, diluents and excipients include, but are not limited to, materials such as carbohydrates, waxes, water soluble and/or swellable polymers, hydrophilic or hydrophobic materials, gelatin, oils, solvents, water and the like.
  • the particular excipient used will depend upon the means and purpose for which the compound or pharmaceutically acceptable salt thereof as described herein is being applied.
  • Solvents are generally selected based on solvents recognized as safe (GRAS) to be administered to a mammal.
  • GRAS solvents recognized as safe
  • safe solvents are non-toxic aqueous solvents such as water and other non-toxic solvents that are soluble or miscible in water.
  • Suitable aqueous solvents include water, ethanol, propylene glycol, polyethylene glycols (e.g., PEG 400, PEG 300), etc. and mixtures thereof.
  • the formulations can also include one or more buffers, stabilizing agents, surfactants, wetting agents, lubricating agents, emulsifiers, suspending agents, preservatives, antioxidants, opaquing agents, glidants, processing aids, colorants, sweeteners, perfuming agents, flavoring agents and other known additives to provide an elegant presentation of the drug (i.e., a compound described herein or pharmaceutical composition thereof) or aid in the manufacturing of the pharmaceutical product (i.e., medicament).
  • the formulations can be prepared using conventional dissolution and mixing procedures.
  • the bulk drug substance i.e., compound or pharmaceutically acceptable salt thereof as described herein or stabilized form thereof (e.g., complex with a cyclodextrin derivative or other known complexation agent) is dissolved in a suitable solvent in the presence of one or more of the excipients described above.
  • the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein as described herein is typically formulated into pharmaceutical dosage forms to provide an easily controllable dosage of the drug and to enable patient compliance with the prescribed regimen.
  • the pharmaceutical composition (or formulation) for application can be packaged in a variety of ways depending upon the method used for administering the drug.
  • an article for distribution includes a container having deposited therein the pharmaceutical formulation in an appropriate form.
  • suitable containers include materials such as bottles (plastic and glass), sachets, ampoules, plastic bags, metal cylinders, and the like.
  • the container can also include a tamper-proof assemblage to prevent indiscreet access to the contents of the package.
  • the container has deposited thereon a label that describes the contents of the container. The label can also include appropriate warnings.
  • Pharmaceutical formulations of the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein can be prepared for various routes and types of administration.
  • a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof having the desired degree of purity can optionally be mixed with one or more pharmaceutically acceptable excipients (Remington’s Pharmaceutical Sciences (1980) 16 th edition, Osol, A. Ed.), in the form of a lyophilized formulation, milled powder, or an aqueous solution.
  • Formulation can be conducted by mixing at ambient temperature at the appropriate pH, and at the desired degree of purity, with physiologically acceptable carriers, i.e., carriers that are non-toxic to recipients at the dosages and concentrations employed.
  • physiologically acceptable carriers i.e., carriers that are non-toxic to recipients at the dosages and concentrations employed.
  • the pH of the formulation depends mainly on the particular use and the concentration of compound, but can range from about 3 to about 8.
  • formulation in an acetate buffer at pH 5 can be a suitable embodiment.
  • the pharmaceutical composition ordinarily can be stored as a solid composition, a lyophilized formulation or as an aqueous solution.
  • the pharmaceutical compositions described herein can be formulated, dosed and administered in a fashion, i.e., amounts, concentrations, schedules, course, vehicles and route of administration, consistent with good medical practice. Factors for consideration in this context include the particular disorder being treated, the particular mammal being treated, the clinical condition of the individual patient, the cause of the disorder, the site of delivery of the agent, the method of administration, the scheduling of administration, and other factors known to medical practitioners.
  • the effective amount of the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof to be administered will be governed by such considerations, and is the minimum amount necessary to ameliorate, or treat the hyperproliferative disorder.
  • the initial pharmaceutically effective amount of the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof administered parenterally per dose will be in the range of about 0.01-100 mg/kg, namely about 0.1 to 20 mg/kg of patient body weight per day, with the typical initial range of compound used being 0.3 to 15 mg/kg/day.
  • a pharmaceutical composition described herein comprises an effective amount of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein in an amount of about: 1mg-10mg; 10mg-25mg; 20mg- 50mg; 50mg-75mg; 70mg-100mg;100mg-150mg; 100mg-200mg; 100mg-500mg; 200mg-500mg; 250mg-500mg; 500mg-1000mg; or 750mg-1000mg.
  • Acceptable pharmaceutically acceptable excipients are nontoxic to recipients at the dosages and concentrations employed, and include buffers such as phosphate, citrate and other organic acids; antioxidants including ascorbic acid and methionine; preservatives (such as octadecyldimethylbenzyl ammonium chloride; hexamethonium chloride; benzalkonium chloride, benzethonium chloride; phenol, butyl or benzyl alcohol; alkyl parabens such as methyl or propyl paraben; catechol; resorcinol; cyclohexanol; 3-pentanol; and m-cresol); low molecular weight (less than about 10 residues) polypeptides; proteins, such as serum albumin, gelatin, or immunoglobulins; hydrophilic polymers such as polyvinylpyrrolidone; amino acids such as glycine, glutamine, asparagine, histidine, argin
  • the active pharmaceutical ingredients can also be entrapped in microcapsules prepared, for example, by coacervation techniques or by interfacial polymerization, for example, hydroxymethylcellulose or gelatin-microcapsules and poly-(methylmethacrylate) microcapsules, respectively, in colloidal drug delivery systems (for example, liposomes, albumin microspheres, microemulsions, nano-particles and nanocapsules) or in macroemulsions.
  • colloidal drug delivery systems for example, liposomes, albumin microspheres, microemulsions, nano-particles and nanocapsules
  • macroemulsions for example, liposomes, albumin microspheres, microemulsions, nano-particles and nanocapsules
  • Sustained-release preparations of compounds or pharmaceutically acceptable salts thereof as described herein may be prepared.
  • sustained-release preparations include semipermeable matrices of solid hydrophobic polymers containing a compound or pharmaceutically acceptable salt thereof as described herein, which matrices are in the form of shaped articles, e.g., films, or microcapsules.
  • sustained-release matrices include polyesters, hydrogels (for example, poly(2-hydroxyethyl-methacrylate), or poly(vinyl alcohol)), polylactides (US 3773919), copolymers of L-glutamic acid and gamma-ethyl-L-glutamate, non-degradable ethylene-vinyl acetate, degradable lactic acid-glycolic acid copolymers such as the LUPRON DEPOTTM (injectable microspheres composed of lactic acid-glycolic acid copolymer and leuprolide acetate) and poly-D-(- )-3-hydroxybutyric acid.
  • the formulations include those suitable for the administration routes detailed herein.
  • the formulations can conveniently be presented in unit dosage form and can be prepared by any methods. Techniques and formulations generally are found in Remington’s Pharmaceutical Sciences (Mack Publishing Co., Easton, PA). Such methods include the step of bringing into association the active ingredient with the carrier which constitutes one or more accessory ingredients. In general, the formulations are prepared by uniformly and intimately bringing into association the active ingredient with liquid carriers or finely divided solid carriers or both, and then, if necessary, shaping the product.
  • Formulations of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein suitable for oral administration can be prepared as discrete units such as pills, capsules, sachets or tablets each containing a predetermined amount of such compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • Compressed tablets can be prepared by compressing in a suitable machine the active ingredient in a free-flowing form such as a powder or granules, optionally mixed with a binder, lubricant, inert diluent, preservative, surface active or dispersing agent.
  • Molded tablets can be made by molding in a suitable machine a mixture of the powdered active ingredient moistened with an inert liquid diluent.
  • the tablets can optionally be coated or scored and optionally are formulated so as to provide slow or controlled release of the active ingredient therefrom.
  • Tablets, troches, lozenges, aqueous or oil suspensions, dispersible powders or granules, emulsions, hard or soft capsules, e.g., gelatin capsules, syrups or elixirs can be prepared for oral use.
  • Formulations of compounds or pharmaceutically acceptable salts thereof as described herein intended for oral use can be prepared according to any method for the manufacture of pharmaceutical compositions and such compositions can contain one or more agents including sweetening agents, flavoring agents, coloring agents and preserving agents, in order to provide a palatable preparation. Tablets containing the active ingredient in admixture with non-toxic pharmaceutically acceptable excipient which are suitable for manufacture of tablets are acceptable.
  • excipients can be, for example, inert diluents, such as calcium or sodium carbonate, lactose, calcium or sodium phosphate; granulating and disintegrating agents, such as maize starch, or alginic acid; binding agents, such as starch, gelatin or acacia; and lubricating agents, such as magnesium stearate, stearic acid or talc. Tablets can be uncoated or can be coated by known techniques including microencapsulation to delay disintegration and adsorption in the gastrointestinal tract and thereby provide a sustained action over a longer period. For example, a time delay material such as glyceryl monostearate or glyceryl distearate alone or with a wax can be employed.
  • inert diluents such as calcium or sodium carbonate, lactose, calcium or sodium phosphate
  • granulating and disintegrating agents such as maize starch, or alginic acid
  • binding agents such as starch, ge
  • the formulations are preferably applied as a topical ointment or cream containing the active ingredient(s) in an amount of, for example, 0.075 to 20% W/W.
  • the active ingredients can be employed with either a paraffinic or a water-miscible ointment base.
  • the active ingredients can be formulated in a cream with an oil-in-water cream base.
  • the aqueous phase of the cream base can include a polyhydric alcohol, i.e., an alcohol having two or more hydroxyl groups such as propylene glycol, butane 1,3-diol, mannitol, sorbitol, glycerol, and polyethylene glycol (including PEG 400) and mixtures thereof.
  • the topical formulations can desirably include a compound which enhances absorption or penetration of the active ingredient through the skin or other affected areas. Examples of such dermal penetration enhancers include dimethyl sulfoxide and related analogs.
  • the oily phase of the emulsions of compositions provided herein can be constituted from known ingredients in a known manner.
  • the phase can comprise merely an emulsifier, it desirably comprises a mixture of at least one emulsifier with a fat or an oil or with both a fat and an oil.
  • a hydrophilic emulsifier is included together with a lipophilic emulsifier which acts as a stabilizer. It is also preferred to include both an oil and a fat.
  • the emulsifier(s) with or without stabilizer(s) make up the so-called emulsifying wax, and the wax together with the oil and fat make up the so-called emulsifying ointment base which forms the oily dispersed phase of the cream formulations.
  • Emulsifiers and emulsion stabilizers suitable for use in the formulation of described herein include Tween® 60, Span® 80, cetostearyl alcohol, benzyl alcohol, myristyl alcohol, glyceryl mono-stearate and sodium lauryl sulfate.
  • Aqueous suspensions comprising a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein can contain the active materials in admixture with excipients suitable for the manufacture of aqueous suspensions.
  • Such excipients include a suspending agent, such as sodium carboxymethylcellulose, croscarmellose, povidone, methylcellulose, hydroxypropyl methylcellulose, sodium alginate, polyvinylpyrrolidone, gum tragacanth and gum acacia, and dispersing or wetting agents such as a naturally occurring phosphatide (e.g., lecithin), a condensation product of an alkylene oxide with a fatty acid (e.g., polyoxyethylene stearate), a condensation product of ethylene oxide with a long chain aliphatic alcohol (e.g., heptadecaethyleneoxycetanol), a condensation product of ethylene oxide with a partial ester derived from a fatty acid and a hexitol anhydride (e.g., polyoxyethylene sorbitan monooleate).
  • a suspending agent such as sodium carboxymethylcellulose, croscarmellose, povidone, methylcellulose, hydroxypropyl
  • the aqueous suspension can also contain one or more preservatives such as ethyl or n-propyl p- hydroxybenzoate, one or more coloring agents, one or more flavoring agents and one or more sweetening agents, such as sucrose or saccharin.
  • preservatives such as ethyl or n-propyl p- hydroxybenzoate
  • coloring agents such as a coloring agent
  • flavoring agents such as sucrose or saccharin.
  • sweetening agents such as sucrose or saccharin.
  • the pharmaceutical compositions of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein can be in the form of a sterile injectable preparation, such as a sterile injectable aqueous or oleaginous suspension.
  • This suspension can be formulated using suitable dispersing or wetting agents and suspending agents which have been mentioned above.
  • the sterile injectable preparation can also be a sterile injectable solution or suspension in a non-toxic parenterally acceptable diluent or solvent, such as a solution in 1,3-butanediol or prepared as a lyophilized powder.
  • a non-toxic parenterally acceptable diluent or solvent such as a solution in 1,3-butanediol or prepared as a lyophilized powder.
  • acceptable vehicles and solvents that can be employed are water, Ringer’s solution and isotonic sodium chloride solution.
  • sterile fixed oils can conventionally be employed as a solvent or suspending medium.
  • any bland fixed oil can be employed including synthetic mono- or diglycerides.
  • fatty acids such as oleic acid can likewise be used in the preparation of injectables.
  • a time-release formulation intended for oral administration to humans can contain approximately 1 to 1000 mg of active material compounded with an appropriate and convenient amount of carrier material which can vary from about 5 to about 95% of the total compositions (weight:weight(w/w)).
  • the pharmaceutical composition can be prepared to provide easily measurable amounts for administration.
  • an aqueous solution intended for intravenous infusion can contain from about 3 to 500 ⁇ g of the active ingredient per milliliter of solution in order that infusion of a suitable volume at a rate of about 30 mL/hr can occur.
  • Formulations suitable for parenteral administration include aqueous and non-aqueous sterile injection solutions which can contain anti-oxidants, buffers, bacteriostats and solutes which render the formulation isotonic with the blood of the intended recipient; and aqueous and non- aqueous sterile suspensions which can include suspending agents and thickening agents.
  • Formulations suitable for topical administration to the eye also include eye drops wherein the active ingredient is dissolved or suspended in a suitable carrier, especially an aqueous solvent for the active ingredient.
  • the active ingredient is preferably present in such formulations in a concentration of about 0.5 to 20% w/w, for example about 0.5 to 10% w/w, for example about 1.5%w/w.
  • Formulations suitable for topical administration in the mouth include lozenges comprising the active ingredient in a flavored basis, usually sucrose and acacia or tragacanth; pastilles comprising the active ingredient in an inert basis such as gelatin and glycerin, or sucrose and acacia; and mouthwashes comprising the active ingredient in a suitable liquid carrier.
  • Formulations for rectal administration can be presented as a suppository with a suitable base comprising for example cocoa butter or a salicylate.
  • Formulations suitable for intrapulmonary or nasal administration have a particle size for example in the range of 0.1 to 500 microns (including particle sizes in a range between 0.1 and 500 microns in increments microns such as 0.5, 1, 30 microns, 35 microns, etc.), which is administered by rapid inhalation through the nasal passage or by inhalation through the mouth so as to reach the alveolar sacs.
  • Suitable formulations include aqueous or oily solutions of the active ingredient.
  • Formulations suitable for aerosol or dry powder administration can be prepared according to conventional methods and can be delivered with other therapeutic agents such as compounds heretofore used in the treatment or prophylaxis disorders as described below.
  • Formulations suitable for vaginal administration can be presented as pessaries, tampons, creams, gels, pastes, foams or spray formulations containing in addition to the active ingredient such carriers considered to be appropriate.
  • the formulations can be packaged in unit-dose or multi-dose containers, for example sealed ampoules and vials, and can be stored in a freeze-dried (lyophilized) condition requiring only the addition of the sterile liquid carrier, for example water, for injection immediately prior to use.
  • sterile liquid carrier for example water
  • Extemporaneous injection solutions and suspensions are prepared from sterile powders, granules and tablets of the kind previously described.
  • a prodrug as defined herein includes derivatives comprising one or more moieties that modulate or improve one or more physical, physiological or pharmaceutical property such as, but not limited to, solubility, permeability, uptake, biodistribution, metabolic stability, onset of action or some other druglike property, and is transformed to the bioactive or more biologically active substance as provided herein.
  • a prodrug herein has no biological activity until release of the compound or pharmaceutically acceptable salt thereof.
  • Suitable routes include oral, parenteral (including subcutaneous, intramuscular, intravenous (IV), intraarterial, intradermal, intrathecal and epidural), transdermal, rectal, nasal, topical (including buccal and sublingual), vaginal, intraperitoneal, intrapulmonary and intranasal.
  • a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein is administered orally or by IV.
  • the compounds can be administered by intralesional administration, including perfusing or otherwise contacting the graft with the inhibitor before transplantation. It will be appreciated that the preferred route can vary with for example the condition of the recipient.
  • the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof is administered orally, it can be formulated as a pill, capsule, tablet, etc. with a pharmaceutically acceptable carrier or excipient.
  • the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof is administered parenterally, it can be formulated with a pharmaceutically acceptable parenteral vehicle and in a unit dosage injectable form, as detailed below.
  • a pharmaceutical composition comprising a compound or pharmaceutically acceptable salt thereof as described herein and one or more pharmaceutically acceptable excipients.
  • compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein are administered as pharmaceutical compositions capable of being administered to a subject orally or parenterally.
  • the compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein can be formulated for topical or parenteral use where the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof is dissolved or otherwise suspended in a solution suitable for injections, suspensions, syrups, creams, ointments, gels, sprays, solutions and emulsions.
  • Oral administration can promote patient compliance in taking the compound (e.g., formulated as a pharmaceutical composition), thereby increasing compliance and efficacy.
  • Oral pharmaceutical compositions comprising a compound described herein include, but are not limited to, tablets (e.g., coated, non-coated and chewable) and capsules (e.g., hard gelatin capsules, soft gelatin capsules, enteric coated capsules, and sustained release capsules). Tablets can be prepared by direct compression, by wet granulation, or by dry granulation.
  • Oral pharmaceutical compositions comprising a compound described herein can be formulated for delayed or prolonged release.
  • a dose to treat human patients can range from about 10 mg to about 1000 mg of a compound described herein.
  • a typical dose can be about 100 mg to about 300 mg of the compound.
  • a dose can be administered once a day (QID), twice per day (BID), or more frequently, depending on the pharmacokinetic and pharmacodynamic properties, including absorption, distribution, metabolism, and excretion of the particular compound.
  • Administration as used herein refers to the frequency of dosing and not, for example, the number of individual units a patient described herein must take for a dose.
  • a patient may take two or more dosage units (e.g., two or more pills/tablets/capsules) QD.
  • toxicity factors can influence the dosage and administration regimen.
  • the pill, capsule, or tablet can be ingested daily or less frequently for a specified period of time.
  • the regimen can be repeated for a number of cycles of therapy.
  • Methods of Treating and Uses [0215]
  • the compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein are useful as Ras inhibitors.
  • the compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein are useful as KRas inhibitors.
  • the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein are useful as NRas inhibitors.
  • the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein are useful as HRas inhibitors.
  • the compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein are useful as G12D Ras inhibitors, and as G12D KRas inhibitors.
  • Provided herein are methods of contacting a cell, such as an ex vivo cell, with a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein, to inhibit Ras activity (e.g., KRas activity) in the cell.
  • the activity is mutant G12D KRas activity.
  • methods of treating a cancer comprising a KRas mutation comprising administering to a patient having such cancer, an effective amount of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof or a pharmaceutical composition as described herein.
  • the KRas mutation is a KRas G12D mutation.
  • the methods further comprise testing a sample (e.g., as set forth herein) from the patient before administration of a compound of pharmaceutically acceptable salt thereof described herein for the absence or presence of a KRas G12D mutation.
  • a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof or pharmaceutical composition described herein is administered to the patient after the patient sample is determined to be positive for (e.g., the presence of) a KRas G12D mutation.
  • the methods of treating a cancer described herein relate to the treatment of cancer such as acute myeloid leukemia, cancer in adolescents, childhood adrenocortical carcinoma, AIDS-related cancers (e.g.
  • lymphoma and Kaposi’s sarcoma anal cancer, appendix cancer, astrocytomas, atypical teratoid rhabdoid tumor, basal cell carcinoma, bile duct cancer, bladder cancer, bone cancer, brain stem glioma, brain tumor, breast cancer, bronchial tumors, Burkitt lymphoma, carcinoid tumor, embryonal tumors, germ cell tumor, primary lymphoma, cervical cancer, childhood cancers, chordoma, cardiac tumors, chronic lymphocytic leukemia (CLL), chronic myelogenous leukemia (CML), chronic myeloproliferative disorders, colon cancer, colorectal cancer, craniopharyngioma, cutaneous T-cell lymphoma, extrahepatic ductal carcinoma in situ (DCIS), embryonal tumors, CNS cancer, endometrial cancer, ependymoma, esophageal cancer, esthesioneuroblastoma, Ewing
  • the cancer is a hematological cancer, pancreatic cancer, MYH associated polyposis, colorectal cancer or lung cancer.
  • the cancer is lung cancer, colorectal cancer, appendiceal cancer, or pancreatic cancer.
  • the cancer is pancreatic cancer, lung cancer, or colon cancer.
  • the lung cancer can be adenocarcinoma, non- small cell lung cancer (NSCLC), or small cell lung cancer (SCLC).
  • the cancer is colorectal cancer.
  • the cancer is pancreatic cancer.
  • the cancer is lung adenocarcinoma.
  • the methods provided herein can also comprise testing a sample from the patient before administration of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein for the absence or presence of a KRas G12D mutation.
  • a compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof or pharmaceutical composition is administered to the patient after the patient sample shows the presence of a KRas G12D mutation.
  • a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein is not administered unless a patient sample comprises a KRas G12D mutation.
  • the cancer is pancreatic cancer, lung cancer, or colorectal cancer.
  • the cancer is tissue agnostic (comprises a KRas G12D mutation).
  • the pancreatic cancer, lung cancer, or colorectal cancer comprises a KRas G12D mutation.
  • the lung cancer is non-small cell lung carcinoma (NSCLC).
  • NSCLC non-small cell lung carcinoma
  • SCLC squamous-cell lung carcinoma
  • lung cancer is adenocarcinoma, NSCLC, or SCLC.
  • the lung cancer is small cell lung carcinoma.
  • the lung cancer is glandular tumors, carcinoid tumors or undifferentiated carcinomas.
  • the lung cancer can be stage I or II lung cancer.
  • the lung cancer is stage III or IV lung cancer.
  • the methods provided herein include administration of the compound as a 1L therapy.
  • Still further provided herein are methods of treating pancreatic cancer comprising a KRas G12D mutation in a patient having such pancreatic cancer.
  • a method (M2) of pancreatic lung cancer comprising a KRas G12D mutation in a patient having pancreatic cancer comprising administering to the patient an effective amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein.
  • the patient has been previously treated with radiation and one or more chemotherapy agents.
  • the pancreatic cancer is stage 0, I, or II.
  • the pancreatic cancer is stage III or stage IV.
  • Still further provided herein are methods of treating colon cancer comprising a KRas G12D mutation in a patient having such colon cancer.
  • a method (M3) of treating colon cancer comprising a KRas G12D mutation in a patient having, the method comprising administering to the patient an effective amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein to the patient.
  • the colon cancer is stage I or II. In another embodiment, the colon cancer is stage III or stage IV.
  • the method further comprises: [0227] (a) determining the absence or presence of a KRas G12D mutation in a sample taken from a patient with a suspected diagnosed cancer; and [0228] (b) administering to the patient an effective amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein. [0229] Further provided herein are methods of treating tissue agnostic cancer comprising a KRas G12D mutation.
  • the method comprises: [0230] (a) determining the absence or presence of a KRas G12D mutation in a sample taken from a patient with a suspected diagnosed cancer; and [0231] (b) administering to the patient an effective amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein.
  • the patient is diagnosed with a cancer described herein.
  • the sample is a tumor sample taken from the subject. In one such embodiment, the sample is taken before administration of any therapy.
  • the sample is taken before administration of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein and after administration of another chemotherapeutic agent.
  • the compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein is administered as provided herein (e.g. orally or IV).
  • the compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof can be for the therapeutic treatment of a cancer comprising a Kras G12D mutation.
  • a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof for the therapeutic and/or prophylactic treatment of a cancer comprising a KRas G12D mutation.
  • the compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof is used in the preparation of a medicament for the therapeutic treatment of a cancer comprising a KRas G12D mutation.
  • Still further provided herein are uses of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein in the manufacture of a medicament for inhibiting tumor metastasis.
  • methods for inhibiting tumor metastasis comprising administering to a patient having a tumor a therapeutically effective amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein.
  • the inhibition is of a tumor comprising a KRas G12D mutation.
  • inhibiting tumor metastasis in a patient described herein results in reduction of tumor size.
  • inhibiting tumor metastasis in a patient described herein results in stabilizing (e.g. no further growth) of tumor size. In another embodiment, inhibiting tumor metastasis in a patient described herein results in remission of the cancer and/or its symptoms.
  • methods for inhibiting proliferation of a cell population comprising contacting the cell population with a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein.
  • the cell population is in a human patient.
  • the cell population comprises a KRas G12D mutation.
  • KRas inhibited is KRas G12D .
  • inhibiting KRas results in decreased tumor size.
  • inhibiting KRas results in remission of the cancer and/or its symptoms.
  • the mutant protein comprises a KRas G12D mutation.
  • the activity of KRas is decreased after contacting with a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein.
  • the downregulation of activity of the KRas mutant protein treats a cancer described herein in a patient described herein.
  • the downregulation of activity of the KRas mutant protein results in decreased tumor size.
  • the downregulation of activity of the KRas mutant protein results in remission of a cancer described herein and/or its symptoms.
  • the methods provided herein comprise inhibiting Kras G12D activity in a cell by contacting said cell with an amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein sufficient to inhibit the activity of KRas G12D in said cell.
  • the methods provided herein comprise inhibiting KRas G12D activity in a tissue by contacting said tissue with an amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein sufficient to inhibit the activity of KRas G12D in said tissue.
  • the methods provided herein comprise inhibiting KRas G12D activity in a patient described herein by contacting said patient with an amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein sufficient to inhibit the activity of KRas G12D in said patient.
  • a labeled KRas G12D mutant protein comprising reacting a KRas G12D mutant protein with a labeled compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein to result in the labeled KRas G12D mutant protein.
  • the label is an imaging agent.
  • the labeled KRas G12D can be used to detect the absence or presence of G12D mutant KRas in a patient sample, thereby detecting the presence or absence of a cancer mediated by mutant KRas.
  • Still further provided herein are methods of inhibiting Ras-mediated cell signaling.
  • the methods comprise contacting a cell with an effective amount of one or more compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof disclosed herein thereof.
  • Inhibition of Ras-mediated signal transduction can be assessed and demonstrated by a wide variety of ways known in the art.
  • Non-limiting examples include a showing of (a) a decrease in GTPase activity of Ras; (b) a decrease in GTP binding affinity or an increase in GDP binding affinity; (c) an increase in K off of GTP or a decrease in K off of GDP; (d) a decrease in the levels of signaling transduction molecules downstream in the Ras pathway, such as a decrease in pMEK level; and/or (e) a decrease in binding of Ras complex to downstream signaling molecules including but not limited to Raf. Kits and commercially available assays can be utilized for determining one or more of the above.
  • KRas mutations have also been identified in hematological malignancies (e.g., cancers that affect blood, bone marrow, and/or lymph nodes). Accordingly, certain embodiments are directed to administration of a disclosed compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof (e.g., in the form of a pharmaceutical composition) as described herein to a patient in need of treatment of a hematological malignancy.
  • Such malignancies include but are not limited to leukemias and lymphomas.
  • the presently disclosed compounds can be used for treatment of diseases such as acute lymphoblastic leukemia (ALL), acute myelogenous leukemia (AML), chronic lymphocytic leukemia (CLL), small lymphocytic lymphoma (SLL), chronic myelogenous leukemia (CML), acute monocytic leukemia (AMoL) and/ or other leukemias.
  • ALL acute lymphoblastic leukemia
  • AML acute myelogenous leukemia
  • CLL chronic lymphocytic leukemia
  • SLL small lymphocytic lymphoma
  • CML chronic myelogenous leukemia
  • AoL acute monocytic leukemia
  • the compounds or a pharmaceutically acceptable salt thereof described herein are useful for treatment of lymphomas such as all subtypes of Hodgkin's lymphoma or non-Hodgkin's lymphoma.
  • Determining whether a tumor or cancer comprises a KRas G12D mutation can be undertaken by assessing the nucleotide sequence encoding the KRas protein, by assessing the amino acid sequence of the KRas protein, or by assessing the characteristics of a putative KRas mutant protein.
  • the sequence of wild-type human KRas e.g., Accession No. NP203524. is known in the art.
  • Methods for detecting a mutation in a KRas nucleotide sequence are known by those of skill in the art.
  • PCR-RFLP polymerase chain reaction-restriction fragment length polymorphism
  • PCR-SSCP polymerase chain reaction-single strand conformation polymorphism
  • MASA mutant allele-specific PCR amplification
  • direct sequencing primer extension reactions
  • electrophoresis oligonucleotide ligation assays
  • hybridization assays TaqMan assays
  • SNP genotyping assays high resolution melting assays and microarray analyses.
  • samples are evaluated for G12d KRas mutations by real-time PCR.
  • Methods for determining whether a tumor or cancer comprises a KRas G12D mutation can use a variety of samples.
  • the sample is taken from a subject having a tumor or cancer.
  • the sample is a fresh tumor/cancer sample.
  • the sample is a frozen tumor/cancer sample. In some embodiments, the sample is a formalin-fixed paraffin-embedded sample. In some embodiments, the sample is processed to a cell lysate. In some embodiments, the sample is processed to DNA or RNA. [0246] Further provided herein are uses of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein, in the manufacture of a medicament for treating cancer. In some embodiments, the medicament is formulated for oral administration. In some embodiments, the medicament is formulated for injection (e.g. IV administration). In some embodiments, the cancer comprises a KRas G12D mutation.
  • the cancer is a hematological cancer, pancreatic cancer, MYH associated polyposis, colorectal cancer or lung cancer.
  • the cancer is lung cancer, colorectal cancer, or pancreatic cancer.
  • the cancer is colorectal cancer.
  • the cancer is pancreatic cancer.
  • the cancer is lung adenocarcinoma.
  • the compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein may be employed alone or in combination with other therapeutic agents for the treatment of a disease or disorder described herein.
  • the second compound of the pharmaceutical combination formulation or dosing regimen preferably has complementary activities to the compound or a pharmaceutically acceptable salt thereof described herein such that they do not adversely affect each other.
  • the combination therapy may provide "synergy” and prove “synergistic", i.e., the effect achieved when the active ingredients used together is greater than the sum of the effects that results from using the compounds separately.
  • the combination therapy may be administered as a simultaneous or sequential regimen. When administered sequentially, the combination may be administered in two or more administrations.
  • Combination therapies herein comprise the administration of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein, and the use of at least one other treatment method.
  • the amounts of the compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein and the other pharmaceutically active agent(s) and the relative timings of administration will be selected in order to achieve the desired combined therapeutic effect.
  • the additional therapeutic agent is an epidermal growth factor receptor (EGFR) inhibitor, phosphatidylinositol kinase (PI3K) inhibitor, insulin-like growth factor receptor (IGF1R) inhibitor, a Janus kinase (JAK) inhibitor, a Met kinase inhibitor, a SRC family kinase inhibitor, a mitogen-activated protein kinase (MEK) inhibitor, an extracellular- signal-regulated kinase (ERK) inhibitor, a topoisomerase inhibitor (such as irinotecan, or such as etoposide, or such as doxorubicin), a taxane (such as anti-microtubule agents including paclitaxel and docetaxel), an anti-metabolite agent (such as 5-FU or such as gemcitabine), or an alkylating agent (such as cisplatin or such as cyclophosphamide), or a tax
  • EGFR epidermal growth factor receptor
  • the additional therapeutic agent is an epidermal growth factor receptor (EGFR) inhibitor, such as Erlotinib or such as Afatinib.
  • EGFR epidermal growth factor receptor
  • the additional therapeutic agent is gefitinib, osimertinib, or dacomitinib.
  • the additional therapeutic agent is a monoclonal antibody such as cetuximab (Erbitux) or panitumumab (Vectibix).
  • the GFR inhibitor is a dual or pan- HER inhibitor.
  • the additional therapeutic agent is a phosphatidylinositol-3-kinase (PI3K) inhibitor, such as GDC-0077, GDC-0941, MLN1117, BYL719 (Alpelisib) or BKM120 (Buparlisib).
  • PI3K phosphatidylinositol-3-kinase
  • GDC- 0941 refers to 2-(1H-indazol-4-yl)-6-(4- methanesulfonyl-piperazin-1-ylmethyl)-4-morpholin-4-yl- thieno[3,2-d]pyrimidine or a salt thereof (e.g., bismesylate salt).
  • the additional therapeutic agent is an insulin-like growth factor receptor (IGF1R) inhibitor.
  • IGF1R insulin-like growth factor receptor
  • the insulin-like growth factor receptor (IGF1R) inhibitor is NVP-AEW541.
  • the additional therapeutic agent is IGOSI-906 (Linsitinib), BMS-754807, or in other embodiments the additional therapeutic agent is a neutralizing monoclonal antibody specific to IGF1R such as AMG-479 (ganitumab), CP- 751,871 (figitumumab), IMC-A12 (cixutumumab), MK-0646 (dalotuzumab), or R-1507 (robatumumab).
  • the additional therapeutic agent is a Janus kinase (JAK) inhibitor.
  • the additional therapeutic agent is CYT387, GLPG0634, Baricitinib, Lestaurtinib, momelotinib, Pacritinib, Ruxolitinib, or TG101348.
  • the additional therapeutic agent is an anti-glypican 3 antibody.
  • the anti-glypican 3 antibody is codrituzumab.
  • the additional therapeutic agent is an antibody drug conjugate (ADC).
  • the ADC is polatuzumab vedotin, RG7986, RG7882, RG6109, or RO7172369.
  • the additional therapeutic agent is an MDM2 antagonist.
  • the MDM2 antagonist is idasanutlin.
  • the additional therapeutic agent is an agonistic antibody against CD40.
  • the agonistic antibody against CD40 is selicrelumab (RG7876).
  • the additional therapeutic agent is a bispecific antibody.
  • the bispecific antibody is RG7828 (BTCT4465A), RG7802, RG7386 (FAP- DR5), RG6160, RG6026, ERY974, or anti-HER2/CD3.
  • the additional therapeutic agent is a targeted immunocytokine.
  • the targeted immunocytokine is RG7813 or RG7461.
  • the additional therapeutic agent is an antibody targeting colony stimulating factor-1 receptor (CSF-1R).
  • the CSF-1R antibody is emactuzumab.
  • the additional therapeutic agent is a personalized cancer vaccine.
  • the personalized cancer vaccine is RG6180.
  • the additional therapeutic agent is an inhibitor of BET (bromodomain and extraterminal family) proteins (BRD2/3/4/T). In some embodiments, the BET inhibitor is RG6146. [0263] In some other embodiments, the additional therapeutic agent is an antibody designed to bind to TIGIT. In some embodiments, the anti-TIGIT antibody is RG6058 (MTIG7192A). [0264] In some other embodiments, the additional therapeutic agent is a selective estrogen receptor degrader (SERD). In some other embodiments, the SERD is RG6047 (GDC-0927) or RG6171 (GDC-9545, giredestrant).
  • BET bromodomain and extraterminal family proteins
  • the additional therapeutic agent is an MET kinase inhibitor, such as Crizotinib, tivantinib, AMG337, cabozantinib, or foretinib.
  • the additional therapeutic agent is a neutralizing monoclonal antibody to MET such as onartuzumab.
  • the additional therapeutic agent is a SRC family non-receptor tyrosine kinase inhibitor.
  • the additional therapeutic agent is an inhibitor of the subfamily of SRC family non-receptor tyrosine kinases. Exemplary inhibitors in this respect include Dasatinib.
  • the additional therapeutic agent is a mitogen-activated protein kinase (MEK) inhibitor.
  • the mitogen-activated protein kinase (MEK) inhibitor is trametinib, selumetinib, COTELLIC® (cobimetinib), PD0325901, or RO5126766.
  • the MEK inhibitor is GSK-1120212, also known as trametinib.
  • the additional therapeutic agent is an extracellular-signal- regulated kinase (ERK) inhibitor.
  • the mitogen-activated protein kinase (MEK) inhibitor is SCH722984 or GDC-0994.
  • the protein kinase inhibitor is taselisib, ipatasertib, GDC-0575, GDC- 5573 (HM95573), RG6114 (GDC-0077), CKI27, Afatinib, Axitinib, Atezolizumab, Bevacizumab, Bostutinib, Cetuximab, Crizotinib, Dasatinib, Erlotinib, Fostamatinib, Gefitinib, Imatinib, Lapatinib, Lenvatinib, Ibrutinib, Nilotinib, Panitumumab, Pazopanib, Pegaptanib, Ranibizumab, Ruxolitinib, Sorafenib, Sunit
  • the additional therapeutic agent is a topoisomerase inhibitor.
  • the topoisomerase inhibitor is Irinotecan.
  • the additional therapeutic agent is a taxane. Exemplary taxanes include Taxol and Docetaxel.
  • other chemotherapeutics are presently known in the art and can be used in combination with the compounds and pharmaceutically acceptable salts thereof described herein.
  • the chemotherapeutic is selected from the group consisting of mitotic inhibitors, alkylating agents, anti-metabolites, intercalating antibiotics, growth factor inhibitors, cell cycle inhibitors, enzymes, topoisomerase inhibitors, biological response modifiers, anti-hormones, angiogenesis inhibitors, and anti-androgens.
  • chemotherapeutic agents include cytotoxic agents, and non-peptide small molecules such as Gleevec® (Imatinib Mesylate), Velcade® (bortezomib), Casodex (bicalutamide), Iressa® (gefitinib), and Adriamycin as well as a host of chemotherapeutic agents.
  • Non-limiting examples of chemotherapeutic agents include alkylating agents such as thiotepa and cyclosphosphamide (CYTOXANTM); alkyl sulfonates such as busulfan, improsulfan and piposulfan; aziridines such as benzodopa, carboquone, meturedopa, and uredopa; ethylenimines and methyl melamines including altretamine, triethylenemelamine, triethylenephosphoramide, triethylenethiophosphaoramide and trimethylol melamine; nitrogen mustards such as chlorambucil, chlornaphazine, cyclophosphamide, estramustine, ifosfamide, mechlorethamine, mechlorethamine oxide hydrochloride, melphalan, novembichin, phenesterine, prednimustine, trofosfamide, uracil mustard; nitrosoureas such as carmus
  • paclitaxel TAXOL TM , Bristol-Myers Squibb Oncology, Princeton, N.J.
  • docetaxel TAXOTERE TM , Rhone-Poulenc Rorer, Antony, France
  • retinoic acid esperamicins
  • capecitabine ecitabine
  • pharmaceutically acceptable salts, acids or derivatives of any of the above TAXOL TM , Bristol-Myers Squibb Oncology, Princeton, N.J.
  • anti-hormonal agents that act to regulate or inhibit hormone action on tumors
  • anti-estrogens including for example tamoxifen, (NolvadexTM), raloxifene, aromatase inhibiting 4(5)-imidazoles, 4-hydroxytamoxifen, trioxifene, keoxifene, LY 117018, onapristone, and toremifene (Fareston); anti-androgens such as flutamide, nilutamide, bicalutamide, leuprolide, and goserelin; chlorambucil; gemcitabine; 6-thioguanine; mercaptopurine; methotrexate; platinum analogs such as cisplatin and carboplatin; vinblastine; platinum; etoposide (VP-16); ifosfamide; mitomycin C; mitoxantrone; vincristine; vinorelbine; navelbine; no
  • the compounds or pharmaceutical acceptable salts thereof or pharmaceutical composition as described herein can be used in combination with commonly prescribed anti-cancer drugs such as Herceptin®, Avastin®, Gazyva®, Tecentriq®, Alecensa®, Perjeta®, VenclextaTM, Erbitux®, Rituxan®, Taxol®, Arimidex®, Taxotere®, ABVD, AVICINE, Abagovomab, Acridine carboxamide, Adecatumumab, 17-N-Allylamino-17-demethoxygeldanamycin, Alpharadin, Alvocidib, 3-Aminopyridine-2-carboxaldehyde thiosemicarbazone, Amonafide, Anthracenedione, Anti-CD22 immunotoxins, Antineoplastic, Antitumorigenic herbs, Apaziquone, Atiprimod, Azathioprine, Belotecan, Bendamustine, BIBW 2992, Bir
  • the compound and the additional therapeutic agent are co-administered. In other embodiments, the compound and the additional therapeutic agent are separately administered.
  • the compound and the additional therapeutic agent are administered with the second agent simultaneously or separately. This administration in combination can include simultaneous administration of the two agents in the same dosage form, simultaneous administration in separate dosage forms, and separate administration. That is, the compound and any of the additional therapeutic agents described herein can be formulated together in the same dosage form and administered simultaneously. Alternatively, the compound and any of the additional therapeutic agents described herein can be simultaneously administered, wherein both the agents are present in separate formulations.
  • the compound can be administered just followed by any of the additional therapeutic agents described herein, or vice versa.
  • the compound and any of the additional therapeutic agents described herein are administered a few minutes apart, or a few hours apart, or a few days apart.
  • kit articles of manufacture, or "kit", containing materials useful for the treatment of a cancer provided herein.
  • the kit comprises a container comprising compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein.
  • the kit may further comprise a label or package insert on or associated with the container.
  • Suitable containers include, for example, bottles, vials, syringes, blister pack, etc.
  • the container may be formed from a variety of materials such as glass or plastic.
  • the container may hold a compound or a pharmaceutically acceptable salt thereof described herein or a formulation thereof which is effective for treating the condition and may have a sterile access port (for example, the container may be an intravenous solution bag or a vial having a stopper pierceable by a hypodermic injection needle).
  • At least one active agent in the composition is a compound or a pharmaceutically acceptable salt thereof described herein.
  • the article of manufacture may further comprise a second container comprising a pharmaceutical diluent, such as bacteriostatic water for injection (BWFI), phosphate-buffered saline, Ringer's solution or dextrose solution. It may further include other materials desirable from a commercial and user standpoint, including other buffers, diluents, filters, needles, and syringes.
  • BWFI bacteriostatic water for injection
  • phosphate-buffered saline such as bacteriostatic water for injection (BWFI), phosphate-buffered saline, Ringer's solution or dextrose solution.
  • BWFI bacteriostatic water for injection
  • phosphate-buffered saline such as bacteriostatic water for injection
  • Ringer's solution or dextrose solution such as bacteriostatic water for injection
  • dextrose solution such as bacteriostatic water for injection
  • the kits are suitable for the delivery of solid oral forms of a compound or
  • Embodiment I-1 A compound of formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; wherein Y 1 is N or CR 01 , Y 2 is N or CR 02 , Y 3 is N or CR 03 ; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, CN, NH2, N(Me)2, C1-3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is NH2, and at least one of R01
  • Embodiment I-2 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein X is -NR12-.
  • Embodiment I-3 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-2, wherein X is -NH-.
  • Embodiment I-1 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein no more than one of R 01 , R02, R03, R04, and R05 is hydrogen.
  • Embodiment I-6 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein no more than two of R01, R02, R03, R04, and R05 is hydrogen.
  • Embodiment I-7 Embodiment I-7.
  • Embodiment I-1 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein one of R 01 , R 02 , R 03 , R 04 , and R 05 is halogen.
  • Embodiment I-8 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein one of R01, R02, R03, R04, and R 05 is C 1-3 -haloalkyl.
  • Embodiment I-9 Embodiment I-9.
  • Embodiment I-1 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein one of R 01 , R 02 , R 03 , R 04 , and R05 is amino.
  • Embodiment I-10 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein R1 is: [0287] Embodiment I-11.
  • Embodiment I-12 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein R1 is: [0288] Embodiment I-12.
  • Embodiment I-1 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein [0289] Embodiment I-13.
  • Embodiment I-13 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein R 2 is fluoro.
  • Embodiment I-14 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein R3' and R3'' are both H.
  • Embodiment I-15 Embodiment I-15.
  • Embodiment I-17 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein each R4' is hydrogen and R 4 '' is methyl.
  • Embodiment I-16 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein each R 4 ' is hydrogen and R4'' is CF3.
  • Embodiment I-17 Embodiment I-17.
  • Embodiment I-1 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein, when present, at least one of R 10 is selected from -NH 2 , -NHR 11 , -N(R 11 ) 2 , -R 11 -NH 2 , -R 11 -NH-R 11 , -R 11 -N-(R 11 ) 2 .
  • Embodiment I-18 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein R 5 and R 6 together with the nitrogen atom to which they are both bonded form an azetidine ring.
  • Embodiment I-19 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a pyrrolidine ring.
  • Embodiment I-20 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-17, wherein one R 10 is dimethylamino.
  • Embodiment I-21 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-17, wherein one R10 is methyl.
  • Embodiment I-22 A compound of formula (II),
  • R 01 , R 02 , R 03 , R 04 , and R 05 is independently hydrogen, halogen, CN, NH 2 , N(Me) 2 , C 1-3 alkyl, C 1-3 haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl
  • Embodiment I-23 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein X is -NR12-.
  • Embodiment I-24 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-23, wherein X is -NH-.
  • Embodiment I-22 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein no more than one of R 01 , R02, R03, R04, and R05 is hydrogen.
  • Embodiment I-27 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein no more than two of R01, R 02 , R 03 , R 04 , and R 05 is hydrogen.
  • Embodiment I-28 Embodiment I-28.
  • Embodiment I-22 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein one of R 01 , R 02 , R 03 , R 04 , and R05 is halogen.
  • Embodiment I-29 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein one of R01, R02, R03, R04, and R 05 is C 1-3 -haloalkyl.
  • Embodiment I-30 Embodiment I-30.
  • Embodiment I-22 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein one of R 01 , R 02 , R 03 , R 04 , and R05 is amino. [0307] Embodiment I-31. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein R1 is: [0308] Embodiment I-32. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein R 1 is: [0309] Embodiment I-33.
  • Embodiment I-22 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein [0310] Embodiment I-34. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein R 2 is fluoro. [0311] Embodiment I-35. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein R3' and R3'' are both H. [0312] Embodiment I-36.
  • Embodiment I-22 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein each R4' is hydrogen and R 4 '' is methyl.
  • Embodiment I-37 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein each R 4 ' is hydrogen and R4'' is CF3.
  • Embodiment I-38 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein L1 is a bond.
  • Embodiment I-39 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein L1 is a bond.
  • Embodiment I-40 A compound of formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, CN, NH2, N(Me)2, C1-3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is NH2, and at least one of R01, R 02 , R 03 , R 04 , and R 05 is methyl; R 2 is hydrogen, cyano, halogen, C 1-3 alkyl, C 1-3 haloal
  • Embodiment I-41 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein X is -NR12-.
  • Embodiment I-42 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-41, wherein X is -NH-.
  • Embodiment I-44 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein no more than one of R01, R02, R03, R04, and R05 is hydrogen.
  • Embodiment I-45 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein no more than two of R 01 , R 02 , R 03 , R 04 , and R 05 is hydrogen.
  • Embodiment I-46 Embodiment I-46.
  • Embodiment I-40 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein one of R01, R02, R03, R04, and R05 is halogen.
  • Embodiment I-47 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein one of R 01 , R 02 , R 03 , R 04 , and R 05 is C 1-3 -haloalkyl.
  • Embodiment I-48 Embodiment I-48.
  • Embodiment I-40 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein one of R01, R02, R03, R04, and R05 is amino.
  • Embodiment I-49 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein R1 is: [0326] Embodiment I-50.
  • Embodiment I-40 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein [0328] Embodiment I-52. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein R 2 is fluoro. [0329] Embodiment I-53. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein R3' and R3'' are both H. [0330] Embodiment I-54.
  • Embodiment I-40 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein each R4' is hydrogen and R 4 '' is methyl.
  • Embodiment I-55 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein each R 4 ' is hydrogen and R4'' is CF3.
  • Embodiment I-56 The compound of Embodiment I-40, wherein Q is cyclopropyl.
  • Embodiment I-58 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein each R4' is hydrogen and R 4 '' is methyl.
  • Embodiment I-55 The compound or a stereoi
  • Embodiment I-59 A pharmaceutical composition comprising a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments I-58, and one or more pharmaceutically acceptable excipients.
  • Embodiment I-60 A pharmaceutical composition comprising a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments I-58, and one or more pharmaceutically acceptable excipients.
  • a method of treating cancer comprising administering an effective amount of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments I-1 to I-58, or a pharmaceutical composition of Embodiment I-59.
  • Embodiment I-61 The method of Embodiment I-60, wherein the cancer is characterized as comprising a KRas mutation.
  • Embodiment I-62 The method of Embodiment I-61, wherein the KRas mutation corresponds to a KRas G12D mutation.
  • Embodiment I-63 Embodiment I-63.
  • Embodiment I-64 The method of Embodiment I-63, wherein the compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof or pharmaceutical composition is administered to the patient after the patient sample shows the presence of a KRas G12D mutation.
  • Embodiment I-65 The method of any one of Embodiments I-60 to I-64, wherein the cancer is tissue agnostic.
  • Embodiment I-66 Embodiment I-66.
  • Embodiment I-67 The method of Embodiment I-66, wherein the lung cancer is lung adenocarcinoma, NSCLC, or SCLC.
  • Embodiment I-68 The method of Embodiment I-66, wherein the cancer is pancreatic cancer.
  • Embodiment I-69 The method of Embodiment I-66, wherein the cancer is colorectal cancer.
  • Embodiment I-70 The method of any one of Embodiments I-60 to I-64, further comprising administering at least one additional therapeutic agent.
  • Embodiment I-71 The method of Embodiment I-70, wherein the additional therapeutic agent comprises an epidermal growth factor receptor (EGFR) inhibitor, phosphatidylinositol kinase (PI3K) inhibitor, insulin-like growth factor receptor (IGF1R) inhibitor, a Janus kinase (JAK) inhibitor, a Met kinase inhibitor, a SRC family kinase inhibitor, a mitogen-activated protein kinase (MEK) inhibitor, an extracellular-signal-regulated kinase (ERK) inhibitor, a topoisomerase inhibitor, a taxane, an anti-metabolite agent, or an alkylating agent.
  • EGFR epidermal growth factor receptor
  • PI3K phosphatidylinositol kinase
  • IGF1R insulin-like growth factor receptor
  • JK Janus kinase
  • MEK mitogen-activated protein kinase
  • Embodiment I-72 A compound according to any one of Embodiments I-1 to I-58, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use as a therapeutically active substance.
  • Embodiment I-73 Use of a compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for the therapeutic treatment of a cancer comprising a KRas G12D mutation.
  • Embodiment I-74 Use of a compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for the therapeutic treatment of a cancer comprising a KRas G12D mutation.
  • Embodiment I-75 Use of a compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for the preparation of a medicament for the therapeutic treatment of a cancer comprising a KRas G12D mutation.
  • Embodiment I-76 Use of a compound according to any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically salt thereof, for the preparation of a medicament for the therapeutic treatment of a cancer comprising a KRas G12D mutation.
  • Embodiment I-77 A method for regulating activity of a KRas mutant protein, the method comprising reacting the mutant protein with a compound of any one of Embodiments I- 1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • Embodiment I-78 A compound according to any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically salt thereof, for the therapeutic and/or prophylactic treatment of a cancer comprising a KRas G12D mutation.
  • a method for inhibiting proliferation of a cell population comprising contacting the cell population with the compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • Embodiment I-79 A method of Embodiment I-78, wherein the inhibition of proliferation is measured as a decrease in cell viability of the cell population.
  • Embodiment I-80 A method for inhibiting proliferation of a cell population.
  • Embodiment I-81 A compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use in regulating activity of a KRas mutant protein.
  • Embodiment I-82 A compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use in regulating activity of a KRas mutant protein.
  • Embodiment I-83 The compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt for use of Embodiment I-82, wherein the inhibition of proliferation is measured as a decrease in cell viability of the cell population.
  • Embodiment I-84 A compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use in inhibiting tumor metastasis.
  • Embodiment I-85 Use of a compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for regulating activity of a KRas mutant protein.
  • Embodiment I-86 Use of a compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for inhibiting proliferation of a cell population.
  • Embodiment I-87 Use of a compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for inhibiting proliferation of a cell population.
  • Embodiment I-86 wherein the inhibition of proliferation is measured as a decrease in cell viability of the cell population.
  • Embodiment I-88 Use of a compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for inhibiting tumor metastasis.
  • Embodiment II-1 Use of a compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for inhibiting tumor metastasis.
  • Embodiment II-2 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-1, wherein: wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; , wherein Y 1 is N or CR 01 , Y 2 is N or CR 02 , Y 3 is N or CR 03 ; and each of R 01 , R 02 , R 03 , R 04 , and R 05 is independently hydrogen, halogen, -CN, -NH 2 , -N(Me) 2 , C 1- 3 alkyl, C 1-3 haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is -NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen
  • Embodiment II-3 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-1 or II-2, wherein X is -NR12-.
  • Embodiment II-4 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-3, wherein X is - NH-.
  • Embodiment II-5 Embodiment II-5.
  • Embodiment II-6 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-5, wherein no more than two of R 01 , R 02 , R 03 , R 04 , and R 05 is hydrogen.
  • Embodiment II-7 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-5, wherein no more than two of R 01 , R 02 , R 03 , R 04 , and R 05 is hydrogen.
  • Embodiment II-8 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-7, wherein one of R 01 , R 02 , R 03 , R 04 , and R 05 is halogen.
  • Embodiment II-9 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-6, wherein one of R 01 , R 02 , R 03 , R 04 , and R 05 is halogen.
  • Embodiment II-10 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-9, wherein one of R01, R02, R03, R04, and R05 is amino.
  • Embodiment II-11 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-8, wherein one of R01, R02, R03, R04, and R05 is amino.
  • Embodiment II-18 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-14, wherein each R4' is hydrogen and R4'' is methyl.
  • Embodiment II-20 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-14, wherein each R4' is hydrogen and R4'' is -CF3.
  • Embodiment II-20 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-19, wherein R 2 is fluoro.
  • Embodiment II-21 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-20, wherein R3' and R3'' are both H.
  • Embodiment II-22 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-21, wherein R 5 and R 6 together with the nitrogen atom to which they are both bonded form a 3-10 membered monocyclic ring optionally substituted with one or more groups selected from sulfonyl, cyano, halo, -N(R11)2, R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, C1- 6haloalkoxy-C1-6alkyl, cyano-C1-6alkyl, hydroxy-C1-6alkyl, oxo, carboxy-C1-6alkyl, and C1- 6haloalkyl.
  • Embodiment II-23 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-22, wherein R 5 and R 6 together with the nitrogen atom to which they are both bonded form a 3-10 membered monocyclic ring optionally substituted with one or more groups selected from sulfonyl, cyano, halo, -N(R11)2, R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, hydroxy-C1- 6alkyl, oxo, carboxy-C1-6alkyl, and C1-6haloalkyl.
  • Embodiment II-24 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-22, wherein R 5 and R 6 together with the nitrogen atom to which they are both bonded form an azetidine ring, a pyrrolidine ring, a piperazine ring, or a morpholine ring, optionally substituted with one or more R 10 groups independently selected from sulfonyl, cyano, halo, -N(R11)2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, C1-6haloalkoxy-C1-6alkyl, cyano-C1-6alkyl, hydroxy-C1- 6 alkyl, oxo, carboxy-C 1-6 alkyl, and C 1-6 haloalky
  • Embodiment II-25 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiments II-1 to II-24, wherein R 5 and R 6 together with the nitrogen atom to which they are both bonded form an azetidine ring, a pyrrolidine ring, a piperazine ring, or a morpholine ring, optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R11)2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C 1-6 alkoxy, C 1-6 alkyl, C 1-6 alkoxy-C 1-6 alkyl, hydroxy-C 1-6 alkyl, oxo, carboxy-C 1-6 alkyl, and C 1- 6 haloalkyl.
  • Embodiment II-26 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-22 or II-24, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring optionally substituted with one or more groups selected from sulfonyl, cyano, halo, -N(R 11 ) 2 , R 11 -N(R 11 ) 2 , hydroxyl, C 1-6 alkoxy, C 1-6 alkyl, C 1-6 alkoxy-C 1-6 alkyl, C 1- 6 haloalkoxy-C 1-6 alkyl, cyano-C 1-6 alkyl, hydroxy-C 1-6 alkyl, oxo, carboxy-C 1-6 alkyl, and C 1- 6haloalkyl.
  • Embodiment II-27 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-26, wherein R5 and R 6 together with the nitrogen atom to which they are both bonded form an azetidine ring optionally substituted with one or more groups selected from sulfonyl, cyano, halo, -N(R 11 ) 2 , R 11 -N(R 11 ) 2 , hydroxyl, C 1-6 alkoxy, C 1-6 alkyl, C 1-6 alkoxy-C 1-6 alkyl, hydroxy-C 1-6 alkyl, oxo, carboxy-C1-6alkyl, and C1-6haloalkyl.
  • Embodiment II-28 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-27, wherein R5 and R 6 together with the nitrogen atom to which they are both bonded form an azetidine ring.
  • Embodiment II-29 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-27, wherein R5 and R 6 together with the nitrogen atom to which they are both bonded form an azetidine ring.
  • Embodiment II-31 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-25, wherein R5 and R 6 together with the nitrogen atom to which they are both bonded form a piperazine ring optionally substituted with one or more oxo groups.
  • Embodiment II-32 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-25 or II-29, wherein R 5 and R 6 together with the nitrogen atom to which they are both bonded form a piperazine ring optionally substituted with one or more oxo groups.
  • Embodiment II-33 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-25, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a morpholine ring optionally substituted with one or more groups selected from hydroxy-C1-6alkyl and oxo.
  • Embodiment II-33 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-33, wherein both rings of the two chained rings are saturated heterocycles, each independently comprising 1-3 ring heteroatoms independently selected from the group consisting of N, O, and S.
  • Embodiment II-35 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-33, wherein one ring of the two chained rings is azetidine, and the second ring is a saturated heterocycle or heteroaryl, each comprising 1-3 ring heteroatoms independently selected from the group consisting of O and N.
  • Embodiment II-36 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-21, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a 3-10 membered spirocyclic ring optionally substituted with one or more groups selected from hydroxyl, C 1- 6 alkyl, and oxo.
  • Embodiment II-37 Embodiment II-37.
  • Embodiment II-36 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-36, wherein the spirocyclic ring is a 3-10 membered, saturated spirocyclic ring comprising 1-3 annular N atoms.
  • Embodiment II-38 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-21, wherein R5 and R 6 together with the nitrogen atom to which they are both bonded form a 3-10 membered fused bicyclic ring optionally substituted with one or more hydroxyl groups.
  • Embodiment II-39 Embodiment II-39.
  • Embodiment II-40 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-39, wherein one R 10 is dimethylamino.
  • Embodiment II-42 A compound of formula (II),
  • R 01 , R 02 , R 03 , R 04 , and R 05 is independently hydrogen, halogen, -CN, - NH2, -N(Me)2, C1-3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is -NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R 3 ' and R
  • Embodiment II-43 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-42, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; wherein Y 1 is N or CR 01 , Y 2 is N or CR 02 , Y 3 is N or CR 03 ; and each of R 01 , R 02 , R 03 , R 04 , and R 05 is independently hydrogen, halogen, CN, NH 2 , N(Me) 2 , C 1-3 alkyl, C 1-3 haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen
  • Embodiment II-44 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-42 or II-43, wherein X is -NR 12 -.
  • Embodiment II-45 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-44, wherein X is -NH-.
  • Embodiment II-46 Embodiment II-46.
  • Embodiment II-47 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-46, wherein no more than two of R01, R02, R03, R04, and R05 is hydrogen.
  • Embodiment II-48 Embodiment II-48.
  • Embodiment II-49 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-48, wherein one of R01, R02, R03, R04, and R05 is halogen.
  • Embodiment II-50 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-48, wherein one of R01, R02, R03, R04, and R05 is halogen.
  • Embodiment II-51 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-50, wherein one of R01, R02, R03, R04, and R05 is amino.
  • Embodiment II-52 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-50, wherein one of R01, R02, R03, R04, and R05 is amino.
  • Embodiment II-59 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of any one of Embodiments II-42 to II-55, wherein each R 4 ' is hydrogen and R 4 '' is methyl.
  • Embodiment II-60 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-55, wherein each R4' is hydrogen and R4'' is -CF3.
  • Embodiment II-61 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-60, wherein R2 is fluoro.
  • Embodiment II-62 Embodiment II-62.
  • Embodiment II-63 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-61, wherein R 3 ' and R3'' are both H.
  • Embodiment II-63 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62, wherein L 1 is a bond.
  • Embodiment II-64 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-63, wherein J1 is R 8 .
  • Embodiment II-65 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-64, wherein R 8 is C 1-6 alkyl optionally substituted with one or more groups selected from halogen, hydroxy, cyano, and oxo.
  • Embodiment II-66 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62, wherein L2 is a bond.
  • Embodiment II-67 Embodiment II-67.
  • Embodiment II-68 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62, wherein L 2 is –(CHR 13 ) q –.
  • Embodiment II-68 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62 or II-66 to II-67, wherein Z2 is –O-Q, –O-CH2-Q, –O-CH2CH2-Q, or –O-CH2CH2CH2-Q.
  • Embodiment II-69 Embodiment II-69.
  • Embodiment II-70 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62 or II-66 to II-68, wherein Z2 is –O-CH2-Q, –O-CH2CH2-Q, or –O-CH2CH2CH2-Q.
  • Embodiment II-71 Embodiment II-71.
  • Embodiment II-72 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62, II-66 to 68, or II-70, wherein Z 2 is –O-CH 2 -Q.
  • Embodiment II-72 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62, II-66 to 68, or II-70, wherein Z2 is –O-CH2-CH2-Q.
  • Embodiment II-73 Embodiment II-73.
  • Embodiment II-74 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62 or II-66 to II-73, wherein R 14 is C 1-6 alkyl optionally substituted by one or more groups selected from hydroxyl, halogen, and oxo.
  • Embodiment II-75 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62 or II-66 to II-73, wherein R13 is hydrogen and R14 is C1-6alkyl.
  • Embodiment II-76 Embodiment II-76.
  • Embodiment II-77 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62, II-66 to II- 73, or II-76, wherein Q is selected from: cyclopropane, cyclobutane, cyclohexane, benzene, pyrrolidine, piperidine, morpholine, pyridine, pyridazine, pyrazine, pyrimidine, 1,4-dioxane, 1H-pyrazole, isoindoline-1,3-dione, 2-oxabicyclo[2.1.1]hexane, tetrahydrofuran, oxetane, tetrahydropyran, thietane, 2,3-dihydrobenzofuran, iso-oxazole, bicyclo[1.1.1]pentane, 6,7- di
  • Embodiment II-78 A compound of formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; wherein Y 1 is N or CR 01 , Y 2 is N or CR 02 , Y 3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, -CN, - NH2, -N(Me)2, C1-3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R 01 , R 02 , R 03 , R 04 , and R 05 is -NH 2 , and at least one of R 01 , R 02 , R 03 , R 04 , and R 05 is methyl; R 2 is hydrogen, cyano,
  • Embodiment II-79 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-78, wherein X is -NR 12 -.
  • Embodiment II-80 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-78 or II-79, wherein X is -NH-.
  • Embodiment II-81 Embodiment II-81.
  • Embodiment II-82 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-81, wherein no more than two of R 01 , R 02 , R 03 , R 04 , and R 05 is hydrogen.
  • Embodiment II-83 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-81, wherein no more than two of R 01 , R 02 , R 03 , R 04 , and R 05 is hydrogen.
  • Embodiment II-84 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-83, wherein one of R 01 , R 02 , R 03 , R 04 , and R 05 is halogen.
  • Embodiment II-85 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-83, wherein one of R 01 , R 02 , R 03 , R 04 , and R 05 is halogen.
  • Embodiment II-86 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-84, wherein one of R01, R02, R03, R04, and R05 is C1-3-haloalkyl.
  • Embodiment II-86 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-85, wherein one of R 01 , R 02 , R 03 , R 04 , and R 05 is amino.
  • Embodiment II-87 Embodiment II-87.
  • Embodiment II-94 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of any one of Embodiments II-78 to II-90, wherein each R 4 ' is hydrogen and R 4 '' is methyl.
  • Embodiment II-95 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-90, wherein each R 4 ' is hydrogen and R 4 '' is -CF 3 .
  • Embodiment II-96 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-95, wherein R2 is fluoro.
  • Embodiment II-97 Embodiment II-97.
  • Embodiment II-98 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-97, wherein L2 is –(CH2)q–.
  • Embodiment II-99 Embodiment II-99.
  • Embodiment II-100 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-99, wherein Q is cyclopropyl.
  • Embodiment II-101 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-99, wherein Q is cyclopropyl.
  • Embodiment II-102 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-101, wherein J is C1-6alkyl-NR8R9.
  • Embodiment II-103 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-101, wherein J is C1-6alkyl-NR8R9.
  • Embodiment II-104 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-100, wherein J is NR 8 R 9 .
  • Embodiment II-104 The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-103, wherein each of R8 and R9 are independently hydrogen or C1-6alkyl optionally substituted with oxo, halogen, C 1-6 alkoxy, and 5-6 membered heterocyclyl.
  • Embodiment II-105 Embodiment II-105.
  • Embodiment II-106 A compound selected from the group consisting of compounds 1-262 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • Embodiment II-107 A compound selected from the group consisting of compounds 1-182 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • Embodiment II-108 A compound selected from the group consisting of compounds 1-182 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • Embodiment II-109 A pharmaceutical composition comprising a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-108, and one or more pharmaceutically acceptable excipients.
  • Embodiment II-110 A pharmaceutical composition comprising a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-108, and one or more pharmaceutically acceptable excipients.
  • a method of treating cancer comprising administering an effective amount of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of any one of Embodiments II-1 to II-108, or a pharmaceutical composition of Embodiment II-109.
  • Embodiment II-111 The method of Embodiment II-110, wherein the cancer is characterized as comprising a KRas mutation.
  • Embodiment II-112. The method of Embodiment II-111, wherein the KRas mutation corresponds to a KRas G12D mutation.
  • Embodiment II-113 Embodiment II-113.
  • Embodiment II-110 to II-112 further comprising testing a sample from the patient before administration for the absence or presence of a KRas G12D mutation.
  • Embodiment II-114 The method of Embodiment II-113, wherein the compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof or pharmaceutical composition is administered to the patient after the patient sample shows the presence of a KRas G12D mutation.
  • Embodiment II-115 The method of any one of Embodiments II-110 to II-114, wherein the cancer is tissue agnostic.
  • Embodiment II-116 Embodiment II-116.
  • Embodiment II-117 The method of Embodiment II-116, wherein the lung cancer is lung adenocarcinoma, NSCLC, or SCLC.
  • Embodiment II-118 The method of Embodiment II-116, wherein the cancer is pancreatic cancer.
  • Embodiment II-119 The method of Embodiment II-116, wherein the cancer is colorectal cancer.
  • Embodiment II-120 Embodiment II-120.
  • Embodiment II-121 The method of Embodiment II-120, wherein the additional therapeutic agent comprises an epidermal growth factor receptor (EGFR) inhibitor, phosphatidylinositol kinase (PI3K) inhibitor, insulin-like growth factor receptor (IGF1R) inhibitor, a Janus kinase (JAK) inhibitor, a Met kinase inhibitor, a SRC family kinase inhibitor, a mitogen-activated protein kinase (MEK) inhibitor, an extracellular-signal-regulated kinase (ERK) inhibitor, a topoisomerase inhibitor, a taxane, an anti-metabolite agent, or an alkylating agent.
  • EGFR epidermal growth factor receptor
  • PI3K phosphatidylinositol kinase
  • IGF1R insulin-like growth factor receptor
  • JNK Janus kinase
  • MEK mitogen-activated protein kinase
  • Embodiment II-122 A compound according to any one of Embodiments II-1 to II- 108, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use as a therapeutically active substance.
  • Embodiment II-123 Use of a compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for the therapeutic treatment of a cancer comprising a KRas G12D mutation.
  • Embodiment II-124 Use of a compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for the therapeutic treatment of a cancer comprising a KRas G12D mutation.
  • Embodiment II-125 Use of a compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for the preparation of a medicament for the therapeutic treatment of a cancer comprising a KRas G12D mutation.
  • Embodiment II-126 Use of a compound according to any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically salt thereof, for the preparation of a medicament for the therapeutic treatment of a cancer comprising a KRas G12D mutation.
  • Embodiment II-127 A method for regulating activity of a KRas mutant protein, the method comprising reacting the mutant protein with a compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • Embodiment II-128 A compound according to any one of Embodiments II-1 to II- 108, or stereoisomer, atropisomer, tautomer, or pharmaceutically salt thereof, for the therapeutic and/or prophylactic treatment of a cancer comprising a KRas G12D mutation.
  • a method for inhibiting proliferation of a cell population comprising contacting the cell population with the compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof.
  • Embodiment II-129 The method of Embodiment II-128, wherein the inhibition of proliferation is measured as a decrease in cell viability of the cell population.
  • Embodiment II-130 The method of Embodiment II-130.
  • a method for inhibiting tumor metastasis comprising administering to an individual in need thereof a therapeutically effective amount of the compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof to a subject in need thereof.
  • Embodiment II-131 A compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use in regulating activity of a KRas mutant protein.
  • Embodiment II-132 A compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use in regulating activity of a KRas mutant protein.
  • Embodiment II-133 The compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt for use of Embodiment II-132, wherein the inhibition of proliferation is measured as a decrease in cell viability of the cell population.
  • Embodiment II-134 A compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use in inhibiting tumor metastasis.
  • Embodiment II-135. Use of a compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for regulating activity of a KRas mutant protein.
  • Embodiment II-136. Use of a compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for inhibiting proliferation of a cell population.
  • Embodiment II-136 wherein the inhibition of proliferation is measured as a decrease in cell viability of the cell population.
  • Embodiment II-138 Use of a compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for inhibiting tumor metastasis.
  • Embodiments [0503] Provided below are exemplary embodiments of the invention. EXAMPLES [0504] The following Examples are presented by way of illustration, not limitation.
  • Intermediates [0505] Intermediate 1: 5,7-Dichloro-8-fluoro-2-(methylthio) pyrido[4,3-d] pyrimidin-4(3H)-one
  • Step 1 2,6-Dichloro-3-fluoropyridin-4-amine
  • a solution of 2,6-dichloropyridin-4-amine (9.01 g, 55.3 mmol) and SelectFlour (23.6 g, 66.6 mmol) in DMF (90 mL) and acetonitrile (90 mL) was stirred for 30 min at 80 °C.
  • the mixture was concentrated under vacuum.
  • the crude product was purified by reverse phase chromatography (gradient: 0–40 % acetonitrile in water (0.1% formic acid)) to afford the title compound (4.62 g, 46% yield) as a light brown solid.
  • Step 4 4-Amino-2,6-dichloro-5-fluoronicotinic acid
  • LC-MS: (ESI, m/z): [M+H] + 225.
  • Step 5 5,7-Dichloro-8-fluoro-2-thioxo-2,3-dihydropyrido[4,3-d] pyrimidin-4(1H)-one
  • 4-amino-2,6-dichloro-5-fluoronicotinic acid (2.01 g, 8.92 mmol) in MeCN (60 mL)/pyridine (20 mL) was added ethoxycarbonyl isothiocyanate (4.20 mL, 35.6 mmol). The resulting solution was stirred at room temperature for 2 hours and concentrated under vacuum.
  • Step 6 5,7-Dichloro-8-fluoro-2-(methylthio) pyrido [4,3-d] pyrimidin-4(3H)-one
  • N-dichloro-8-fluoro-2-thioxo-2,3-dihydropyrido[4,3-d] pyrimidin-4(1H)-one (1.58 g, 5.93 mmol) in DMF (20 mL) was added CH 3 ONa (320 mg, 5.93 mmol) at 0 o C. The resulting solution was stirred for 10 min at room temperature. Then CH3I (842 mg, 5.93 mmol) was added slowly at room temperature.
  • Step 2 3-(tert-Butyl) 2-methyl (1R,2S,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane-2,3- dicarboxylate and 3-(tert-Butyl) 2-methyl (1R,2R,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane-2,3- dicarboxylate
  • Step 2 3-(tert-Butyl) 2-methyl (1R,2S,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane-2,3- dicarboxylate
  • TMEDA 17.7 g, 152.59 mmol
  • Step 3 tert-Butyl (1R,2S,5S)-8-benzyl-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane-3- carboxylate
  • Step 3 tert-Butyl (1R,2S,5S)-8-benzyl-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane-3- carboxylate
  • Step 4 (6S,9R,9aS)-10-Benzylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3-one [0526] Under nitrogen, to a solution of tert-Butyl (1R,2S,5S)-8-benzyl-2-(hydroxymethyl)-3,8- diazabicyclo[3.2.1]octane-3-carboxylate (5.1 g, 15.34 mmol) in THF (100 mL) was added NaH (1.35 g, 33.75 mmol, 60% in mineral oil) at 0°C.
  • Step 5 (6S,9R,9aS)-Hexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3-one
  • 6S,9R,9aS A mixture of (6S,9R,9aS)-10-Benzylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3- one (10.0 g, 38.7 mmol) and Pd/C (3.0 g, 10% dry ) in methyl alcohol (200 mL) was stirred under an atmosphere of hydrogen at room temperature for 2 hours at room temperature. The catalyst was filtered off.
  • Step 7 tert-Butyl (1R,2S,5S)-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
  • Step 8 tert -Butyl (1S,2S,5R)-2-(((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)methyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate [0534] Under nitrogen, to a solution of tert -butyl (1S,2S,5R)-2-(hydroxymethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (289 mg, 1.19 mmol) in THF (20 mL) was added NaH (191 mg, 4.78 mmol, 60% in mineral oil) at 0 o C.
  • Step 9 tert -Butyl (5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [0536] To a solution of tert -butyl (1S,2S,5R)-2-(((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)methyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1.05 g, 2.15 mmol) in DCM (10 mL) was added DIPEA (4.16 g, 32.3 mmol) and
  • Step 1 tert-Butyl 8-benzyl-3,8-diazabicyclo [3.2.1] octane-3-carboxylate Under nitrogen, to a solution of tert-butyl 3,8-diazabicyclo [3.2.1] octane-3-carboxylate (5.00 g, 23.5 mmol) in N, N-dimethylformamide (50 mL) were added K 2 CO 3 (6.51 g, 47.1 mmol) and (bromomethyl)benzene (6.01 g, 35.1 mmol) at 0 °C, and the mixture was warmed to room temperature.
  • Step 2 (1S,6S,9R,9aS)-10-Benzyl-1-methylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a] azepin-3-one
  • a solution of tert-butyl 8-benzyl-3,8-diazabicyclo [3.2.1] octane-3- carboxylate (7.0 g, 23.1mmol) and TMEDA (5.38 g, 46.3mmol) in diethyl ether (70 mL) was added s-BuLi (35.6 mL, 46.3 mmol, 1.3 M in hexane) dropwise at –78 °C.
  • Step 3 (1S,6S,9R,9aS)-1-Methylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3-one
  • (1S,6S,9R,9aS)-10-Benzyl-1-methylhexahydro-1H,3H-6,9- epiminooxazolo[3,4-a] azepin-3-one (1.00 g, 3.67 mmol) (compound A from the previous step) and Pd/C (500 mg, 10%) in methyl alcohol (15 mL) was stirred for 1 h at room temperature under an atmosphere of hydrogen gas.
  • Step 4 tert-Butyl (1S,6S,9R,9aS)-1-methyl-3-oxohexahydro-1H,3H-6,9- epiminooxazolo[3,4-a] azepine-10-carboxylate
  • a solution of (1S,6S,9R,9aS)-1-methylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a] azepin-3-one (658 mg, 3.61 mmol), (Boc)2O (1.18 g, 5.41 mmol) and DIPEA (1.4 g, 10.8 mmol) in dichloromethane (10 mL) was stirred for 30 min at room temperature.
  • Step 5 tert-Butyl (1R,2S,5S)-2-((S)-1-hydroxyethyl)-3,8-diazabicyclo [3.2.1] octane-8- carboxylate
  • Step 3 5-Bromo-2-fluoro-N, N-bis(4-methoxybenzyl)-3-methyl-4-(trifluoromethyl)aniline
  • Step 3 5-Bromo-2-fluoro-N, N-bis(4-methoxybenzyl)-3-methyl-4-(trifluoromethyl)aniline
  • Step 4 (5-(Bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl) boronic acid
  • 5-bromo-2-fluoro-N N-bis(4-methoxybenzyl)-3-methyl-4- (trifluoromethyl) aniline (2.40 g, 4.68 mmol) and triisopropyl borate (1.60 mL, 6.91mmol) in THF (35 mL) was added n-BuLi (2.2 mL, 2.5 M in THF) at –78 °C. The resulting solution was stirred for 1h at –78 °C.
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12-(methylthio)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate [0560] To a solution of tert-butyl (1S,2S,5R)-2-((S)-1-((7-chloro-8-fluoro-2-(methylthio)-4-oxo- 3,4-dihydropyrido[4,3-d] pyrimidin-5-yl) oxy) ethyl)-3,8-diazabicyclo [3.2.1] octane-8
  • Step 3 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate [0562] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- (methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,
  • Step 4 tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [0564] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylthio)- 5a,6,7,8,9,10-
  • Step 1 tert-Butyl (1R,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane-3-carboxylate
  • tert-butyl (1R,5S)-3,8-diazabicyclo[3.2.1]octane-3- carboxylate (10.0 g, 47.1 mmol) and K2CO3 (13.1 g, 94.9 mmol) in N,N-dimethylformamide (70 mL) was added (bromomethyl)benzene (12.3 g, 71.9 mmol) at 0 o C.
  • the result solution was stirred at room temperature for 1.5 hours.
  • Step 2 3-(tert-Butyl) 2-isopropyl (1R,5S)-8-benzyl-3,8-diazabicyclo [3.2.1]octane-2,3- dicarboxylate
  • tert-butyl (1R,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane- 3-carboxylate (10.0 g, 33.1 mmol) in diethyl ether (150 mL) was added N 1 ,N 1 ,N 2 ,N 2 - tetramethylethane-1,2-diamine (7.69 g, 66.2 mmol) and s-BuLi (1.3 M in Cyclohexane) (51.2 mL, 66.6 mmol) at –78 °C.
  • Step 5 tert-Butyl (6S,9R)-1,1-dimethyl-3-oxohexahydro-1H,3H-6,9-epiminooxazolo[3,4- a]azepine-10-carboxylate [0577] A solution of (6S,9R)-1,1-dimethylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3- one (1.51 g, 7.69 mmol), (Boc) 2 O (3.34 g, 15.3 mmol) and DIPEA (3.97 g, 30.8 mmol) in dichloromethane (40 mL) was stirred at room temperature for 2 hours.
  • Step 6 tert-Butyl (1R,5S)-2-(2-hydroxypropan-2-yl)-3,8-diazabicyclo [3.2.1]octane-8- carboxylate
  • Step 7 tert-Butyl (1R,5S)-2-(2-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d] pyrimidin-5-yl)oxy)propan-2-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (isomer 1)
  • tert-butyl (1R,5S)-2-(2-hydroxypropan-2-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate 300 mg, 1.11 mmol
  • tetrahydrofuran 20 mL
  • Step 2 3-Benzyl 8-(tert-butyl) (1S,2S,5R)-2-formyl-3,8-diazabicyclo[3.2.1]octane-3,8- dicarboxylate (the faster peak) and 3-Benzyl 8-(tert-butyl) (1S,2R,5R)-2-formyl-3,8- diazabicyclo[3.2.1]octane-3,8-dicarboxylate [0588] Under nitrogen, to a solution of oxalyl dichloride (10.2 g, 80.9 mmol) in dichloromethane (130 mL) was added a solution of DMSO (12.6 g, 161 mmol) in dichloromethane (70 mL) dropwise slowly at –78 °C.
  • Step 3 3-Benzyl 8-(tert-butyl) (1S,2S,5R)-2-(oxiran-2-yl)-3,8-diazabicyclo[3.2.1]octane- 3,8-dicarboxylate (two diastereomers) [0590] To a solution of trimethylsulfoniumiodide (12.0 g, 58.9 mmol) in dimethyl sulfoxide (100 mL) and tetrahydrofuran (20 mL) was added NaH (60%) (2.17 g, 54.3 mmol) at room temperature. The solution was stirred for 1 hour.
  • Step 4 3-Benzyl 8-(tert-butyl) (1S,2S,5R)-2-(1,2-dihydroxyethyl)-3,8- diazabicyclo[3.2.1]octane-3,8-dicarboxylate Boc [0592] To a solution of 3-benzyl 8-(tert-butyl) (1S,2S,5R)-2-(oxiran-2-yl)-3,8-diazabicyclo [3.2.1] octane-3,8-dicarboxylate (1.96 g, 5.05 mmol) (isomer 2 of last step) in tetrahydrofuran (18 mL) was added aqueous H2SO4 (10% in water, 2 mL).
  • Step 6 tert-Butyl (1S,2S,5R)-2-(2-((tert-butyldiphenylsilyl)oxy)-1-hydroxyethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (isomer 2)
  • Step 7 tert-Butyl (1S,2S,5R)-2-(2-((tert-butyldiphenylsilyl)oxy)-1-((7-chloro-8-fluoro-2- (methylthio)-4-oxo-3,4-dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)ethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate [0598] Under nitrogen, to a solution of tert-butyl (1S,2S,5R)-2-(2-((tert-butyldiphenylsilyl)oxy)-1- hydroxyethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1.56 g, 3.05 mmol) in tetrahydrofuran (35 mL) was added NaH (60%) (1.03 g, 25.8
  • Step 8 tert-Butyl (5aS,6S,9R)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-2-chloro-1-fluoro- 12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (isomer 2) [0600] A solution of tert-butyl (1S,2S,5R)-2-(2-((tert-butyldiphenylsilyl) oxy)-1-((7-chloro-8- fluoro-2-(methylthio)-4-oxo-3,4-dihydropyrido[4,3-d]pyrimidin-5-
  • Step 2 Benzyl 2-formylazetidine-1-carboxylate
  • benzyl 2-(hydroxymethyl)azetidine-1-carboxylate (1.00 g, 4.52 mmol) and DIPEA (1.75 g, 13.6 mmol) in dichloromethane (10 mL)
  • py-SO 3 (2.16 g, 13.6 mmol) in DMSO (10 mL) dropwise at 0°C and stirred for 2 hours.
  • the reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum.
  • Step 3 Benzyl 2-(1H-imidazol-2-yl)azetidine-1-carboxylate [0609] To a solution of benzyl 2-formylazetidine-1-carboxylate (660 mg, 3.01mmol) in methanol (15 mL) was added oxalaldehyde (40 wt% aqueous solution, 7 mL, 60.8 mmol) and ammonia (25 wt% aqueous solution, 8 mL, 107 mmol) at room temperature and stirred for 3 hours. The reaction mixture was diluted with water and extracted with ethyl acetate.
  • Step 4 Benzyl 2-(1-methyl-1H-imidazol-2-yl)azetidine-1-carboxylate [0611] To a solution of benzyl 2-(1H-imidazol-2-yl)azetidine-1-carboxylate (420 mg, 1.53 mmol) in tetrahydrofuran (10 mL) was added NaH (60% dispersion in mineral oil, 122 mg, 3.06 mmol) at 0 °C and stirred for 30 minutes. Then MeI (435 mg, 3.06 mmol) was added dropwise at 0 °C, and the mixture was stirred at room temperature for 2 hours. The reaction was quenched with saturated NH4Cl aqueous solution.
  • Step 5 2-(Azetidin-2-yl)-1-methyl-1H-imidazole
  • a mixture of benzyl 2-(1-methyl-1H-imidazol-2-yl) azetidine-1- carboxylate (150 mg, 0.554 mmol) and 10%Pd/C (58.7 mg, 0.0554mmol) in ethyl acetate (20 mL) was stirred at room temperature 2 hours.
  • the resulting mixture was filtered over celite, and the filter cake was washed with ethanol.
  • the combined filtrate was concentrated under vacuum to afford the title compound (110 mg, crude) as a light yellow oil.
  • Step 2 3-Fluoro-4-methoxy-1-(3-methylazetidin-3-yl)pyrrolidine dihydrochloride (two trans isomers)
  • a mixture of 1-(1-benzhydryl-3-methylazetidin-3-yl)-3-fluoro-4- methoxypyrrolidine 200 mg, 0.563 mmol, the faster peak of last step
  • 20% Pd(OH) 2 /C (78.8 mg, 0.0563 mmol, contain 50% water) and HCl (1M aqueous solution, 4 mL) in ethanol (20 mL) was stirred at room temperature overnight.
  • Step 1 3-Benzyl 8-(tert-butyl) (1R,2S,5S)-2-(hydroxymethyl)-3,8-diazabicyclo [3.2.1]octane-3,8-dicarboxylate [0622] To a solution of tert-butyl (1R,2S,5S)-2-(hydroxymethyl)-3,8-diazabicyclo [3.2.1] octane-8- carboxylate (5.00 g, 20.6 mmol) and N-ethyl - N-isopropylpropan-2-amine (5.33 g, 41.3 mmol) in dichloromethane (50.0 mL) was added benzyl chloroformate (4.57 g, 26.9 mmol) at 0 °C.
  • Step 2 3-Benzyl 8-(tert-butyl) (1R,2S,5S)-2-formyl-3,8-diazabicyclo [3.2.1] octane-3,8- dicarboxylate and 3-benzyl 8-(tert-butyl) (1R,2R,5S)-2-formyl-3,8-diazabicyclo[3.2.1]octane-3,8- dicarboxylate [0624] Under nitrogen, to a solution of oxalyl dichloride (18.4 mL, 2 M in DCM) in dichloromethane (10.0 mL) was added dimethylsulfoxide (5.73 g, 73.5 mmol) in dichloromethane (10.0 mL) at –78 °C.
  • Step 3 3-Benzyl 8-(tert-butyl) (1R,2S,5S)-2-(2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl)- 3,8-diazabicyclo [3.2.1] octane-3,8-dicarboxylate and 3-benzyl 8-(tert-butyl) (1R,2R,5S)-2-(2,2,2- trifluoro-1-((trimethylsilyl) oxy) ethyl)-3,8-diazabicyclo [3.2.1] octane-3,8-dicarboxylate [0628] A solution of 3-benzyl 8-(tert-butyl) (1R,2S,5S)-2-formyl-3,8-diazabicyclo [3.2.1] octane- 3,8-dicarboxylate (faster peak of step 2) (1.46 g, 3.90 mmol), trimethyl
  • Step 4 3-Benzyl 8-(tert-butyl) (1R,2S,5S)-2-((S)-2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl)-3,8-diazabicyclo [3.2.1] octane-3,8-dicarboxylate and 3-benzyl 8-(tert-butyl) (1R,2S,5S)-2- ((R)-2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl)-3,8-diazabicyclo [3.2.1] octane-3,8-dicarboxylate [0631] The mixture of diastereomers of 3-Benzyl 8-(tert-butyl) (1R,2S,5S)-2-(2,2,2-trifluoro-1- ((trimethylsilyl)oxy)ethyl)-3,8-diazabicyclo[3.2.1]
  • Step 5 tert-Butyl (1R,6S,9R,9aS)-3-oxo-1-(trifluoromethyl) hexahydro-1H,3H-6,9- epiminooxazolo[3,4-a] azepine-10-carboxylate
  • Step 6 tert-Butyl (1R,2S,5S)-2-((R)-2,2,2-trifluoro-1-hydroxyethyl)-3,8-diazabicyclo [3.2.1] octane-8-carboxylate [0637] To a solution of tert-butyl (1R,6S,9R,9aS)-3-oxo-1-(trifluoromethyl) hexahydro-1H,3H-6,9- epiminooxazolo[3,4-a] azepine-10-carboxylate (480 mg, 1.43 mmol) in ethanol (5.00 mL) was added NaOH (571 mg, 14.3 mmol) in water (1.0 mL).
  • Step 2 tert-Butyl (5R,5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)-5-(trifluoromethyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate [0643] A solution of tert-butyl (1S,2S,5R)-2-((R)-1-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d] pyrimidin-5-yl) oxy)-2,2,2-trifluoroethyl)-3,8-diazabicyclo [
  • Step 2 4-Bromo-3-fluoro-N,N-bis(4-methoxybenzyl)-6-methylpyridin-2-amine
  • Step 2 4-Bromo-3-fluoro-N,N-bis(4-methoxybenzyl)-6-methylpyridin-2-amine
  • Step 3 3-Fluoro-N,N-bis(4-methoxybenzyl)-6-methyl-4-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)pyridin-2-amine
  • 4-bromo-3-fluoro-N,N-bis(4-methoxybenzyl)-6- methylpyridin-2-amine 150mg, 0.340mmol
  • B 2 Pin 2 (128mg, 0.510mmol
  • Pd(dppf)Cl 2 49.3mg, 0.0700mmol
  • KOAc 66.0mg, 0.670mmol
  • Step 2 4-Bromo-5-iodo-N, N-bis(4-methoxybenzyl)-6-methylpyridin-2-amine
  • a solution of 4-bromo-N, N-bis(4-methoxybenzyl)-6-methylpyridin-2-amine (2.10 g, 4.91 mmol) and NIS (1.11 g, 4.91 mmol) in acetic acid (20mL) was stirred at room temperature for 30 min. The reaction was quenched with water, and the resulting mixture was extracted with EtOAc. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum.
  • Step 3 4-Bromo-N,N-bis(4-methoxybenzyl)-6-methyl-5-(trifluoromethyl)pyridin-2-amine
  • Step 3 4-Bromo-N,N-bis(4-methoxybenzyl)-6-methyl-5-(trifluoromethyl)pyridin-2-amine
  • 4-bromo-5-iodo-N, N-bis(4-methoxybenzyl)-6-methylpyridin- 2-amine (2.58 g, 4.66 mmol)
  • methyl 2,2-difluoro-2-(fluorosulfonyl) acetate 5.94 mL, 46.6 mmol
  • CuI 8.86 g, 46.6 mmol
  • Step 4 (6-(Bis(4-methoxybenzyl) amino)-2-methyl-3-(trifluoromethyl) pyridin-4-yl) boronic acid
  • Step 4 (6-(Bis(4-methoxybenzyl) amino)-2-methyl-3-(trifluoromethyl) pyridin-4-yl) boronic acid
  • 4-bromo-N N-bis(4-methoxybenzyl)-6-methyl-5- (trifluoromethyl) pyridin-2-amine (1.83g, 3.69mmol) and triisopropyl borate (1.28 mL, 5.54mmol) in tetrahydrofuran (20mL) was added a solution of n-BuLi (2.77 mL, 1.6 M in hexane) –78 °C, and the reaction was maintained at –78 °C for 1 h.
  • Step 2 tert-Butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3- (trifluoromethyl) pyridin-4-yl)-1-fluoro-12-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14- carboxylate [0668] To a solution of tert-butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3- (trifluoromethyl) pyridin-4-yl)-1-fluoro-12-(methylthio)-5-(trifluoromethyl)-5a,6,7
  • Step 2 tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [0673] To a solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(methylthio)-5-(trifluoromethyl)-5a
  • Step 2 (2,2-Difluoro-1-((trityloxy)methyl)cyclopropyl)methyl methanesulfonate
  • (2,2-difluoro-1-((trityloxy)methyl)cyclopropyl)methanol (1.00 g, 2.63 mmol) (from the faster peak of step 1) in THF (10mL) and DIPEA (1.70 g, 13.2 mmol) was added Ms 2 O (917 mg, 5.27 mmol) at room temperature. After 2 h, the resulting solution was partitioned between water and EtOAc.
  • Step 3 1-(2,2-Difluoro-1-((trityloxy)methyl)cyclopropyl)-N,N-dimethylmethanamine
  • a solution of [(2,2-difluoro-1-((trityloxy) methyl)cyclopropyl)methyl methanesulfonate (871 mg, 1.90 mmol) and K 2 CO 3 (3.93 g, 28.5 mmol) in THF (9 mL) was added N,N-dimethylamine (14.3 mL, 2 M in THF) at room temperature. The resulting solution was stirred for overnight at 60 °C.
  • Step 4 (1-((Dimethylamino)methyl)-2,2-difluorocyclopropyl) methanol
  • a solution of 1-(2,2-difluoro-1-((trityloxy)methyl)cyclopropyl)-N,N- dimethylmethanamine (313 mg, 0.770 mmol) in dichloromethane (3.5 mL) and TFA (0.5 mL) was stirred at room temperature for 1.5 hours. The solvent was concentrated under vacuum to afford 126 mg (crude) of the title compound as a yellow solid.
  • LC-MS: (ESI, m/z): [M+H] + 166. The crude product was used without further purification.
  • Step 2 (Tetrahydrofuran-3,4-diyl)dimethanol (mixture of cis isomers) [0698] To a solution of diethyl tetrahydrofuran-3,4-dicarboxylate (800 mg, crude) in tetrahydrofuran (10 mL) was added LiAlH 4 (2.5M solution in tetrahydrofuran, 4.5 mL, 11.3 mmol) dropwise at 0 °C, and the mixture was stirred for 1 hour at 0 °C. The reaction was then quenched with Na 2 SO 4 .10H 2 O and filtered over celite.
  • LiAlH 4 2.5M solution in tetrahydrofuran, 4.5 mL, 11.3 mmol
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [0703] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro
  • Step 1 tert-Butyl (5S,5aS,6S,9R)-12-((1-(((tert-butyldimethylsilyl) oxy) methyl) cyclopropyl) methoxy)-2-chloro-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab] heptalene-14-carboxylate [0706] To a solution of (1-(((tert-butyldimethylsilyl) oxy) methyl) cyclopropyl) methanol (842 mg, 3.89 mmol) in tetrahydrofuran (10 mL) was added NaH (60% dispersion in mineral oil, 390 mg, 9.75 mmol) at 0 °C in 3 portions and stirred for 30 minutes at room temperature
  • tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (1.00 g, 1.95 mmol, intermediate 6) was added and stirred for 2 hours at room temperature. The reaction was quenched with saturated NH 4 Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate.
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-12-((1-(((tert-butyldimethylsilyl) oxy) methyl) cyclopropyl) methoxy)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate [0708] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-12-((1-(((tert- butyldimethylsilyl)oxy)methyl)cyclopropyl)methoxy)-2-chloro
  • Step 3 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-12-((1-(hydroxymethyl) cyclopropyl) methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate [0710] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-12-((1-(((tert-butyldi
  • tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12-(methylsulfonyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate (546 mg, 1.06 mmol, intermediate 6) was added and stirred for 1 hour at room temperature. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate.
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2-difluorocyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (two isomers) [0717] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-12-((1-(((tert- butyldiphenylsilyl)oxy)methyl)-2,2-
  • reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-30% EtOAc in petroleum ether) to afford a mixture of isomers (2.40 g) as a yellow solid.
  • Step 3 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-12-((2,2-difluoro-1-(hydroxymethyl) cyclopropyl) methoxy)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (two isomers) intermediate 28 intermediate 29 from faster peak of previous step from slower peak of previous step [0719] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl
  • Step 2 tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (two isomers) [0726] Under nitrogen, a solution of tert-butyl (5R,5aS,6S,9R)-12-((1-(((tert- butyldiphenylsilyl)oxy
  • reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford a mixture (840 mg) as a light brown solid.
  • the two diastereomers were separated by Chiral-Prep-SFC with the following conditions: (Column:( (S, S)-WHELK-O1-Kromasil, 5*25 cm, 10 ⁇ m; Mobile Phase A: CO 2 , Mobile Phase B: IPA; Flow rate: 90 mL/min; Gradient: isocratic 35% B; Column Temperature(°C): 35; Back Pressure(bar): 100; Wavelength: 220 nm; RT1(min): 18.95; RT2(min): 21.17; Sample Solvent: MEOH; Injection Volume: 1 mL; Number Of Runs: 40) to afford isomer 1 (270 mg, 28.9% yield, the faster peak) and isomer 2 (250 mg, 26.8% yield, the slower peak) as white solids.
  • Step 3 tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((2,2-difluoro-1-(hydroxymethyl)cyclopropyl)methoxy)-1-fluoro-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (two isomers) [0728] To a solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)a
  • Step 2 3-Bromo-5-fluoro-N,N-bis(4-methoxybenzyl)-4-(trifluoromethyl)aniline
  • Step 2 3-Bromo-5-fluoro-N,N-bis(4-methoxybenzyl)-4-(trifluoromethyl)aniline
  • Step 3 3-Fluoro-N,N-bis(4-methoxybenzyl)-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2- yl)-4-(trifluoromethyl)aniline
  • a solution of 3-bromo-5-fluoro-N,N-bis[(4-methoxyphenyl)methyl]-4- (trifluoromethyl)aniline 129 mg, 0.260 mmol
  • PdCl 2 (dppf) (19 mg, 0.030 mmol)
  • KOAc (76.0 mg, 0.780 mmol
  • Pin 2 B 2 198 mg, 0.780 mmol
  • Step 2 N,N-Bis(4-methoxybenzyl)-4-methyl-6-(tributylstannyl)-5-(trifluoromethyl) pyridin-2-amine
  • Step 2 N,N-Bis(4-methoxybenzyl)-4-methyl-6-(tributylstannyl)-5-(trifluoromethyl) pyridin-2-amine
  • 6-bromo-N,N-bis(4-methoxybenzyl)-4-methyl-5- (trifluoromethyl)pyridin-2-amine (1.51 g, 3.05 mmol)
  • Sn2(n-Bu)6 (2.65 mg, 4.57 mmol
  • Pd2(dba)3 (279 mg, 0.300 mmol
  • PCy3 (170 mg, 0.610 mmol
  • LiCl (641 mg, 15.3 mmol) in 1,4-dioxane (15 mL) was stirred for 2 h at 110 °C.
  • Step 2 N,N-Bis(4-methoxybenzyl)-4-methyl-6-(tributylstannyl)pyrimidin-2-amine
  • Step 2 N,N-Bis(4-methoxybenzyl)-4-methyl-6-(tributylstannyl)pyrimidin-2-amine
  • 4-bromo-N,N-bis(4-methoxybenzyl)-6-methylpyrimidin-2- amine (0.500 g, 1.17 mmol
  • Sn 2 (n-Bu) 6 (1.02 g, 1.76 mmol)
  • Pd 2 (dba) 3 107 mg, 0.120 mmol
  • PCy 3 (65.6 mg, 0.230 mmol)
  • LiCl (246 mg, 5.85 mmol) in 1,4-dioxane (5 mL) was heated at 120 °C.
  • Step 2 N, N-Dimethyl-3-(trifluoromethyl) azetidin-3-amine hydrochloride salt
  • tert-butyl 3-(dimethylamino)-3-(trifluoromethyl)azetidine-1-carboxylate 150 mg, 0.559 mmol
  • dichloromethane 3 mL
  • hydrogen chloride 3 mL, 4.0 M in 1,4-dioxane
  • Step 2 N-(2,2-Difluoroethyl)-N-methylazetidin-3-amine hydrochloride
  • tert-butyl 3-((2,2-difluoroethyl) (methyl)amino) azetidine-1-carboxylate 69.1 mg, 0.280 mmol
  • HCl/1,4-dioxane 1 mL, 4 M
  • the solution was stirred at room temperature for 2 h.
  • the solution was concentrated under vacuum to afford 75.3 mg (crude) of the title compound as a white solid.
  • Step 2 3-(methoxymethyl)-N, N-dimethylazetidin-3-amine trifluoroacetate
  • HFIP HFIP
  • 2,2,2-trifluoroacetic acid 1 mL
  • the solvent was concentrated under vacuum to afford the title compound (290 mg, crude) as a colorless oil.
  • LC-MS: (ESI, m/z): [M+H] + 145. The crude was used for next step without further purification.
  • Step 2 4-(3-Methylazetidin-3-yl) morpholine hydrochloride
  • a solution of 4-(1-benzhydryl-3-methylazetidin-3-yl) morpholine (160 mg, 0.495 mmol), 20%Pd(OH) 2 /C (69.5 mg, 0.0495 mmol, contain 50% water) and HCl (1M aqueous solution, 2 mL) in ethanol (10 mL) was stirred overnight at room temperature. The resulting mixture was filtered. The filter cake was washed with ethanol. The combined filtrates were concentrated under vacuum to afford the title compound (130 mg, crude) as a yellow solid.
  • Step 2 (9H-Fluoren-9-yl) methyl 8-oxa-2,5-diazaspiro [3.5] nonane-2-carboxylate trifluoroacetate
  • 2-((9H-fluoren-9-yl) methyl) 5-(tert-butyl) 8-oxa-2,5-diazaspiro [3.5] nonane-2,5-dicarboxylate 330 mg, 0.732 mmol
  • 2,2,2-trifluoroacetic acid (1 mL) and stirred for 30 minutes at room temperature.
  • the solvent was concentrated under vacuum to afford the title compound (400 mg, crude) as a colorless solid.
  • Step 3 (9H-Fluoren-9-yl) methyl 5-methyl-8-oxa-2,5-diazaspiro [3.5] nonane-2- carboxylate [0776] To a mixture of (9H-Fluoren-9-yl) methyl 8-oxa-2,5-diazaspiro [3.5] nonane-2-carboxylate trifluoroacetate (400 mg, crude) and K 2 CO 3 (357 mg, 2.58 mmol) in N, N-dimethylacetamide (10 mL) was added MeI (122 mg, 0.861 mmol) and stirred for 2 hours at room temperature.
  • Step 4 5-Methyl-8-oxa-2,5-diazaspiro [3.5] nonane
  • 9H-fluoren-9-yl) methyl 5-methyl-8-oxa-2,5-diazaspiro [3.5] nonane-2- carboxylate 30.0 mg, 0.0822 mmol
  • TBAF 1M solution in tetrahydrofuran, 0.25 mL
  • the solvent was concentrated under vacuum to afford the title compound (50.0 mg, crude) as a colorless solid.
  • LC- MS: (ESI, m/z): [M+H] + 143.
  • Step 2 6-(Allylsulfonyl)-N, N-bis(4-methoxybenzyl)-4-methyl-5-(trifluoromethyl)pyridin-2 amine
  • 6-allylsulfanyl-N,N-bis[(4-methoxyphenyl)methyl]-4-methyl-5- (trifluoromethyl)pyridin-2-amine 5.05 g, 10.3 mmol
  • mCPBA 14.3 g, 82.7 mmol
  • Step 2 (Tetrahydrofuran-3,3-diyl)dimethanol [0788] Under nitrogen, to a solution of dimethyl dihydrofuran-3,3(2H)-dicarboxylate (323 mg, 1.72 mmol) in THF (4 mL) was added LiAlH4 (1.38 mL, 2.5 M in THF) at 0°C. The solution was stirred at 0°C for 3 hours. The reaction was quenched with Na2SO4 ⁇ 10H2O. After filtration, the filtrate was concentrated under vacuum to afford 70 mg (crude) of the title compound as a yellow oil.
  • LC-MS: (ESI, m/z): [M+H] + 133.
  • Step 2 (1-(Methoxymethyl)-2-oxabicyclo[2.1.1]hexan-4-yl)methanol
  • Step 2 4-(Hydroxymethyl)tetrahydrofuran-3-ol (mixture of cis)
  • Step 2 5-(Benzyloxy)-1-azaspiro[3.3]heptan-2-one
  • a solution of 2-(1-amino-2-(benzyloxy)cyclobutyl)acetic acid (3.10 g, 13.2 mmol), 2- chloro-1-methylpyridinium iodide (3.70 g, 14.5 mmol) and Et3N (3.07 g, 30.3 mmol) in ACN (40 mL) was stirred at 80°C overnight. The reaction mixture was cooled to room temperature. The solvent was concentrated under vacuum.
  • Step 2 Methyl 2-(hydroxymethyl)azetidine-2-carboxylate HCl salt
  • HCl/1,4-dioxane 1.5 mL, 4 M
  • the solution was stirred at room temperature for 5 hours.
  • the solvent was concentrated under vacuum to afford 450 mg (crude) of the title compound as a brown solid.
  • LC-MS: (ESI, m/z): [M+H] + 146.
  • the crude product was used for next step without further purification.
  • Step 2 tert-Butyl (2R,3R)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3- (methylthio)azetidine-1-carboxylate
  • Step 3 ((2R,3R)-3-(Methylthio)azetidin-2-yl)methanol HCl salt
  • tert-butyl (2R,3R)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3- (methylthio)azetidine-1-carboxylate 180 mg, 0.517 mmol
  • HCl/1,4- dioxane (2.00 mL, 4 M)
  • the resulting solution was stirred for 1 h at room temperature.
  • the solvent was concentrated under vacuum to yield 107 mg (crude) of the title compound as a yellow solid.
  • Step 2 tert-Butyl (2S,3R)-2-(hydroxymethyl)-3-(1H-1,2,4-triazol-1-yl)azetidine-1- carboxylate
  • tert-butyl (2S,3R)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3-(1H-1,2,4- triazol-1-yl)azetidine-1-carboxylate 108 mg, 0.293 mmol
  • THF tert-butyl
  • TBAF 0.89 mL, 1 M in THF
  • Step 3 ((2S,3R)-3-(1H-1,2,4-Triazol-1-yl)azetidin-2-yl)methanol hydrochloride
  • tert-butyl (2S,3R)-2-(hydroxymethyl)-3-(1H-1,2,4-triazol-1-yl)azetidine-1- carboxylate (68.1 mg, 0.268 mmol) in DCM (1.5 mL) was added HCl/1,4-dioxane (1.5 mL, 4 M). The solution was stirred at room temperature for 1 h. The solution was concentrated under vacuum to afford 66.2 mg (crude) of the title compound as a yellow solid.
  • Step 2 (2S)-2-(((tert-Butyldimethylsilyl)oxy)methyl)azetidine-3-carbonitrile trifluoroacetate
  • a solution of tert-butyl (2S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3-cyanoazetidine-1- carboxylate (134 mg, 0.410 mmol) in TFA (3 mL) was stirred at room temperature for 5 min. The solution was concentrated under vacuum to afford 231 mg (crude) of the title compound as a yellow solid.
  • LC-MS: (ESI, m/z): [M+H] + 227. The crude product was used for next step without further purification.
  • Step 2 tert-Butyl 2-(difluoromethyl)-2-(hydroxymethyl)azetidine-1-carboxylate
  • tert-butyl 2-(difluoromethyl)-2-(hydroxymethyl)azetidine-1-carboxylate To a solution of 1-( tert-butyl) 2-methyl 2-(difluoromethyl)azetidine-1,2-dicarboxylate (1.00 g, 4.08 mmol) in THF (2 mL) was added LiALH 4 (4.89 mL, 1 M in THF) at 0°C and the solution was stirred at room temperature for 2 hours. The reaction was quenched with Na2SO4 ⁇ 10H2O. After filtration, the filtrate was concentrated under vacuum to afford 650 mg (crude) of the title compound as a white solid.
  • Step 2 tert-Butyl (2S,4S)-2-((benzoyloxy)methyl)-4-(bromomethyl)azetidine-1-carboxylate
  • tert-butyl (2S,4S)-2-(benzoyloxymethyl)-4-(hydroxymethyl)azetidine-1- carboxylate 700 mg, 2.18 mmol
  • PPh3 PPh3
  • PPh4 PPh3
  • the solution was stirred at room temperature for 2 hours.
  • the reaction was quenched with water, extracted with EtOAc.
  • Step 3 tert-Butyl (2S,4S)-2-((benzoyloxy)methyl)-4-(cyanomethyl)azetidine-1-carboxylate
  • a solution of tert-butyl (2S,4S)-2-((benzoyloxy)methyl)-4-(bromomethyl) azetidine-1-carboxylate (730 mg, 1.90 mmol) and NaCN (512 mg, 10.4 mmol) in N,N- dimethylformamide (7 mL) was stirred at 30°C for 16 hours. The reaction was quenched with aq. FeSO4, extracted with EtOAc.
  • Step 4 tert-Butyl (2S,4S)-2-(cyanomethyl)-4-(hydroxymethyl)azetidine-1-carboxylate
  • tert-butyl (2S,4S)-2-(benzoyloxymethyl)-4-(cyanomethyl)azetidine-1- carboxylate 370 mg, 1.12 mmol
  • methyl alcohol 2 mL
  • NaOH 1.26 g, 31.5 mmol
  • Step 3 Benzyl (S)-2-(hydroxymethyl)-2-methylazetidine-1-carboxylate & Benzyl (R)-2- (hydroxymethyl)-2-methylazetidine-1-carboxylate
  • 1-((benzyloxy)carbonyl)-2-methylazetidine-2-carboxylic acid 6.3 g, 25.3 mmol
  • borane 75.9 mL, 1M in THF
  • Step 2 tert-Butyl (2S,4R)-2-(((tert-butyldimethylsilyl) oxy) methyl)-4-hydroxypyrrolidine- 1-carboxylate
  • a solution of tert-butyl (2S,4R)-4-hydroxy-2-(hydroxymethyl) pyrrolidine- 1-carboxylate (40.5 g, 186 mmol) in DCM (300 mL) was added 2,6-lutidine (20.1 g, 187 mmol) at room temperature.
  • the reaction system was cooled to -78 o C and TBDMSOTf (39.4 g, 149 mmol) was added.
  • Step 3 tert-Butyl (2S,4R)-2-(((tert-butyldimethylsilyl) oxy) methyl)-4-(tosyloxy) pyrrolidine-1-carboxylate
  • Step 4 tert-Butyl (2S,4R)-2-(hydroxymethyl)-4-(tosyloxy) pyrrolidine-1-carboxylate
  • Step 7 tert-Butyl (1S,4S)-5-benzyl-6-cyano-2,5-diazabicyclo [2.2.1]heptane-2-carboxylate
  • Step 1 2-(tert-Butyl) 6-methyl (1S,4S)-5-benzyl-2,5-diazabicyclo [2.2.1] heptane-2,6- dicarboxylate
  • Step 2 tert-Butyl (1S,4S)-5-benzyl-6-(hydroxymethyl)-2,5-diazabicyclo [2.2.1] heptane-2- carboxylate
  • 2-(tert-butyl) 6-methyl (1S,4S)-5-benzyl-2,5-diazabicyclo [2.2.1] heptane-2,6-dicarboxylate 3.31 g, 9.55 mmol
  • THF 100 mL
  • LiAlH4 5.2 mL, 2.5M in THF
  • Step 3 tert-Butyl (1S,4S)-5-benzyl-6-formyl-2,5-diazabicyclo [2.2.1] heptane-2- carboxylate
  • DMSO dimethyl sulfoxide
  • COCl benzyl-6-formyl-2,5-diazabicyclo
  • Step 4 tert-Butyl (1S,4S)-5-benzyl-6-(1-hydroxyethyl)-2,5-diazabicyclo[2.2.1]heptane-2- carboxylate
  • tert-butyl (1S,4S)-5-benzyl-6-formyl-2,5-diazabicyclo [2.2.1] heptane-2-carboxylate (1.01 g, 3.19 mmol) in THF (50 mL) was added MeMgBr (3.2 mL, 3 M in THF) at -78 o C.
  • Step 5 tert-Butyl (1S,4S)-6-(1-hydroxyethyl)-2,5-diazabicyclo[2.2.1]heptane-2-carboxylate
  • Step 2 tert-Butyl (1S,4S)-5-benzyl-6-(2,2,2-trifluoro-1-hydroxyethyl)-2,5-diazabicyclo [2.2.1] heptane-2-carboxylate
  • tert-butyl (1S,4S)-5-benzyl-6-(2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl)-2,5-diazabicyclo [2.2.1]
  • heptane-2-carboxylate 3.81 g, 8.31 mmol) in THF (100 mL) was added TBAF (5.7 mL, 1 M in THF) and stirred at room temperature for 1 hour.
  • Step 3 tert-Butyl (1S,4S)-6-(2,2,2-trifluoro-1-hydroxyethyl)-2,5- diazabicyclo[2.2.1]heptane-2-carboxylate
  • heptane-2-carboxylate (1.25 g, 3.23 mmol) (the faster peak of last step) in MeOH (10 mL) was added Pd(OH) 2 /C (1.25 g) and the solution was stirred for 6 hours at room temperature.
  • Step 2 tert-Butyl (1R,2S,5S)-3-benzyl-2-formyl-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
  • tert-butyl (1R,2S,5S)-3-benzyl-2-(hydroxymethyl)-3,8- diazabicyclo [3.2.1]octane-8-carboxylate (11.7 g, 35.1 mmol) in DCM (117 mL) was added Dess- Martin periodinane (13.4 g, 31.6 mmol) at 0 o C. The resulting solution was stirred at 0 °C for 1 h.
  • Step 3 tert-Butyl (1R,2S,5S)-3-benzyl-2-((S)-2,2-difluoro-1-hydroxyethyl)-3,8- diazabicyclo [3.2.1]octane-8-carboxylate (the faster peak) and tert-butyl (1R,2S,5S)-3-benzyl-2-((R)- 2,2-difluoro-1-hydroxyethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (the slower peak) [0911] To a solution of tert-butyl (1R,2S,5S)-3-benzyl-2-formyl-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (10.1 g, 30.8 mmol) in DMF (100 mL) was added CsF (4.67 g, 30.9 mmol) and (difluor
  • Step 4 tert-Butyl (1R,2S,5S)-2-((R)-2,2-difluoro-1-hydroxyethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
  • tert-butyl (1R,2S,5S)-3-benzyl-2-((R)-2,2- difluoro-1-hydroxyethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate 500 mg, 1.31 mmol, the slower peak of last step) in MeOH (20.0 mL) was added NH3 (0.700 mL, 4.91 mmol, 7M in MeOH), Pd/C (196 mg, 0.184 mmol,10 wt%).
  • Step 5 tert-Butyl (1S,2S,5R)-2-((R)-1-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)-2,2-difluoroethyl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate [0917] Under nitrogen, to a solution of tert-butyl (1R,2S,5S)-2-((R)-2,2-difluoro-1-hydroxyethyl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (380 mg, 1.30 mmol) in THF (4.00 mL) was added NaH (311 mg, 7.77 mmol, 60% in mineral oil) at 0 °C.
  • Step 7 tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-5-(difluoromethyl)-1-fluoro-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
  • Step 8 tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-5-(difluoromethyl)-1-fluoro-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [0923] To a solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-5-(difluoromethyl)-1-fluoro-12-(methylthi
  • Step 2 3-(tert-Butyl) 2-methyl (1R,2S,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane-2,3- dicarboxylate and 3-(tert-Butyl) 2-methyl (1R,2R,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane-2,3- dicarboxylate [0928] Under N 2 , to a solution of tert-butyl 8-benzyl-3,8-diazabicyclo[3.2.1]octane-3-carboxylate (23.0 g, 76.06 mmol) and TMEDA (17.7 g, 152.59 mmol) in diethyl ether (500 mL) was added dropwise s-BuLi (117 mL, 1.3 M in hexane) at -78°C and stirred at -78°C for 1.5 hours
  • Step 3 tert-Butyl (1R,2S,5S)-8-benzyl-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane-3- carboxylate
  • Step 3 tert-Butyl (1R,2S,5S)-8-benzyl-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane-3- carboxylate
  • Step 4 (6S,9R,9aS)-10-Benzylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3-one
  • tert-butyl 8-benzyl-4-(hydroxymethyl)-3,8- diazabicyclo[3.2.1]octane-3-carboxylate 5.1 g, 15.34 mmol
  • THF 100 mL
  • NaH (1.35 g, 33.8 mmol, 60% in mineral oil
  • Step 5 (6S,9R,9aS)-Hexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3-one
  • 6S,9R,9aS A mixture of (6S,9R,9aS)-10-Benzylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3- one (10.0 g, 38.7 mmol) and Pd/C (3.0 g, 2.8 mmol, 10 wt% ) in methyl alcohol (200 mL) was stirred under an atmosphere of hydrogen at room temperature for 2 hours at room temperature. The catalyst was filtered off.
  • Step 7 tert-Butyl (1R,2S,5S)-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
  • Step 2 tert -Butyl (5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [0943] To a solution of tert-butyl (1S,2S,5R)-2-(((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)methyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1.05 g, 2.15 mmol) in DCM (10 mL) was added DIPEA (4.16 g, 32.3 mmol) and BO
  • Example 1 Compound 1 (Isomer 1 & 2): (1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2-methylazetidin-2- yl)methanol (two isomers)
  • Step 1 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(2-(hydroxymethyl)-2-methylazetidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (two isomers) [0946] To a solution of (2-methylazetidin-2-yl) methanol 2,2,2-trifluoroacetate (237 mg, crude) and DIPEA (427 mg, 3.30 mmol) in tetrahydrofuran (5 mL) was added tert-butyl (5S,5aS,
  • Step 2 (1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-2-methylazetidin-2-yl)methanol (two isomers) [0948] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(2-(hydroxymethyl)
  • Example 2 Each compound in Table 2 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Example 1.
  • Table 2 [0951]
  • Example 2 – Compound 7 (Isomer 1 & 2): 2-(1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)azetidin-2-yl)propan-2-ol (two isomers)
  • Step 1 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl- 4-(trifluoromethyl)aniline [0953] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanona
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [0955] To a solution of 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-(methylthio)- 5a,6,7,8,9,10
  • Step 3 tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [0957] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6
  • Step 4 tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(2-(2-hydroxypropan-2-yl)azetidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (two diastereomers) [0959] To a solution of 2-(azetidin-2-yl)propan-2-ol hydrochloride (67.6 mg, 0.448 mmol) and DIPEA (145 mg, 1.12 mmol) in tetrahydrofuran (5 mL) was added tert-butyl (5S,5aS,6S,9R)
  • Example 3 – Compound 8 5-((5S,5aS,6S,9R)-12-((2-oxabicyclo [2.1.1] hexan -1-yl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl) aniline [0964] Step 1: tert-Butyl (5S,5aS,6S,9R)-12-(((1s,4R)-2-oxabicyclo[2.1.1]hexan-1-yl)methoxy)-2- (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluor
  • Step 2 5-((5S,5aS,6S,9R)-12-((2-Oxabicyclo[2.1.1] hexan-1-yl)methoxy)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline [0967] A solution of tert-butyl (5S,5aS,6S,9R)-12-(((1s,4R)-2-oxabicyclo [2.1.1] hexan-1-yl) methoxy) -2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1- fluoro-5-methyl
  • Step 2 5-((5S,5aS,6S,9R)-12-(Difluoromethoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro- 3-methyl-4-(trifluoromethyl)aniline [0974] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-(difluoromethoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-penta
  • Example 5 Compound 18: 5-((5S,5aS,6S,9R)-12-(Benzyloxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2- yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
  • Step 1 tert-Butyl (5S,5aS,6S,9R)-13-benzyl-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-oxo-5a,6,7,8,9,10,12,13-octahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate & tert-butyl (5S,5aS,6S,9R)-12-(benzyloxy)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexa
  • Step 2 5-((5S,5aS,6S,9R)-12-(Benzyloxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4- (trifluoromethyl)aniline [0979] A solution of tert-butyl (5S,5aS,6S,9R)-12-(benzyloxy)-2-(5-(bis(4-methoxybenzyl)amino)- 4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanona
  • Step 1 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-(2-ethoxy-2-oxoethoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate & tert- butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-13-(2-ethoxy-2-oxoethyl)-1-fluoro-5-methyl-12-oxo
  • Step 2 Ethyl 2-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)acetate [0984] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-(2-ethoxy-2-oxoethoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,
  • Example 7 – Compound 20 4-((5S,5aS,6S,9R)-12-((2-oxabicyclo-[2.1.1] hexan-4- yl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-2-yl)-6-methyl-5-(trifluoromethyl)pyridin-2-amine [0986] Step 1: tert-Butyl (5S,5aS,6S,9R)-12-(((1S,4r)-2-oxabicyclo[2.1.1]hexan-4-yl)methoxy)-2- (6-(bis(4-methoxybenzyl)amino)-2-methyl-3-(trifluoromethyl)pyridin-4-yl)-1-fluoro
  • Step 2 4-((5S,5aS,6S,9R)-12-((2-oxabicyclo[2.1.1] hexan-4-yl)methoxy)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-6-methyl-5-(trifluoromethyl)pyridin-2-amine [0989] A solution of tert-butyl (5S,5aS,6S,9R)-12-(((1S,4r)-2-oxabicyclo[2.1.1] hexan-4- yl)methoxy)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3-(trifluoromethyl)pyridin-4-yl)-1-fluoro- 5-methyl-5methyl-5-
  • Example 8 Compound 21: 2-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl) propan-2-ol [0991] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-chloro-12-((1-(ethoxycarbonyl) cyclopropyl) methoxy)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14
  • reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-100% ethyl acetate in petroleum ether) to afford the title compound (150 mg, 66% yield) as a brown solid.
  • Step 3 Ethyl 1-((((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho [1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropane-1-carboxylate [0996] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-12-((1-(ethoxycarbonyl) cyclopropyl) methoxy)-1-fluoro-5- methyl
  • Step 4 2-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl) propan-2-ol [0998] Under nitrogen, to a solution of ethyl 1-((((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,
  • reaction was quenched with saturated NH4Cl aqueous solution.
  • the combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum.
  • Step 2 3-(((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalen-12-yl) oxy)-2,2-difluoropropan-1-ol [1004] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-12-(2,2-difluoro-3-hydroxypropoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydr
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5,13-dimethyl-12-oxo-5a,6,7,8,9,10,12,13-octahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate & tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1- fluoro-12-methoxy-5-methyl-5a,6,7,8,9,10,12,13-octa
  • Step 3 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-methoxy-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-3- methyl-4-(trifluoromethyl)aniline [1012] A solution of the mixture of A and B (110 mg, 0.127 mmol) in 2,2,2-trifluoroacetic acid (2.00 mL) was stirred for 30 min at room temperature. The solvent was evaporated under vacuum.
  • Example 12 – Compound 35 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-((1- (methoxymethyl) cyclopropyl) methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-3-methyl-4- (trifluoromethyl)aniline [1017] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-12-((1-(methoxymethyl) cyclopropyl) methoxy)-5-methyl- 5a,6,7,8,9
  • Step 1 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-12-((1-formylcyclopropyl) methoxy)-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14- carboxylate [1023] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((1-(hydroxymethyl) cyclopropyl
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-12-((1-(1-hydroxyethyl) cyclopropyl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1025] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((1-
  • Step 3 tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((1-(1-hydroxyethyl) cyclopropyl) methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate [1027] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((1-(1-hydroxyethyl)cyclopropy
  • Step 4 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl) ethan-1-ol (mixture of diastereomers) [1029] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-12-((1-(1-hydroxyethyl) cyclopropyl) methoxy)-5-
  • Example 14 Compound 37 (Isomer 1 & 2) : 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4- fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl)- 2,2,2-trifluoroethan-1-ol (two diastereomers)
  • Step 1 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-((1-(2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl) cyclopropyl) methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate [1032] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)
  • Step 2 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl)-2,2,2-trifluoroethan-1-ol (two diastereomers) [1034] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-((1-(2,2,2-
  • Step 1 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-((1-(2,2,2-trifluoro-1-hydroxyethyl) cyclopropyl) methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate [1039] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-((1-(2,2,2-trifluoroacetyl) cyclopropyl) methoxy)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate [1041] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-
  • Step 3 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl)-2,2,2-trifluoroethane-1,1-diol [1043] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl
  • Example 16 Compound 39 (Isomer 1&2): (1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)-2,2- difluorocyclopropyl)methanol (two diastereomers) [1045] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-12-((2,2-difluoro-1-(hydroxymethyl)
  • Example 17 – Compound 40 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12- ((methylsulfonyl)methyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline
  • Step 2 2,6-Dichloro-4-(2-chloroacetamido)-5-fluoronicotinamide
  • Step 2 2,6-Dichloro-4-(2-chloroacetamido)-5-fluoronicotinamide
  • 4-amino-2,6-dichloro-5-fluoronicotinamide 500 mg, 2.23 mmol
  • 2-chloroacetyl chloride 2 mL, 25.1 mmol, solvent
  • the combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum.
  • Step 3 5,7-Dichloro-2-(chloromethyl)-8-fluoropyrido[4,3-d]pyrimidin-4(3H)-one
  • a mixture of 2,6-dichloro-4-(2-chloroacetamido)-5-fluoronicotinamide (180 mg, 0.602 mmol) and K2CO3 (41.5 mg, 0.301 mmol) in water (2 mL) was irradiated in a microwave initiator at 80 °C for 1 hour. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum.
  • Step 4 tert-Butyl (1R,2S,5S)-2-((S)-1-((7-chloro-2-(chloromethyl)-8-fluoro-4-oxo-3,4- dihydropyrido[4,3-d] pyrimidin-5-yl)oxy)ethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate [1056] To a solution of tert-butyl (1S,2S,5R)-2-((S)-1-hydroxyethyl)-3,8-diazabicyclo [3.2.1] octane-8-carboxylate (98.3 mg, 0.384 mmol, intermediate 3) in tetrahydrofuran (2 mL) was added NaH (60% dispersion in mineral oil, 25.6 mg, 0.640 mmol) at 0°C and stirred for 30 minutes at room temperature.
  • Step 6 tert-Butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12-((methylthio)methyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate [1060] A solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-12-(chloromethyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate (80.0 mg, 0.166 mmol) and sodium methanethio
  • Step 7 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((methylthio)methyl)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1062] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- ((methylthio)methyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanona
  • Step 8 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((methylsulfonyl)methyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1064] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((methylthio)methyl)-5a,6,7,8,9,10
  • Step 9 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-((methylsulfonyl)methyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen- 2-yl)-3-methyl-4-(trifluoromethyl)aniline [1066] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((methylsulfonyl)methyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate [1071] To a solution of 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-(methylthio)-5a, 6, 7, 8, 9, 10-he
  • Step 3 tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1073] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6
  • Step 4 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl- 4-(trifluoromethyl)aniline [1075] To a solution of tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaph
  • Step 2 tert-Butyl (5aS,6S,9R)-2-chloro-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate [1080] To a solution of tert-butyl (5aS,6S,9R)-2-chloro-1-fluoro-12-(methylsulfonyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (578 mg, 1.16 mmol) in methyl alcohol (5.00 mL) was added NaBH4 (87.6 mg, 2.31 mmol)
  • Step 3 tert-Butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate [1082] Under nitrogen, a solution of tert-butyl (5aS,6S,9R)-2-chloro-1-fluoro-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (203 mg, 0.480 mmol), (5aS,6
  • Step 4 2-Fluoro-5-((5aS,6S,9R)-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4- (trifluoromethyl)aniline
  • Example 20 – Compound 43 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen- 2-yl)-3-methyl-4-(trifluoromethyl)aniline [1086] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanona
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1089] Under nitrogen, a solution of tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)- 4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-
  • Step 3 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1091] Under nitrogen, to a solution of tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)- 5a,6,7,8,9,10-hexahydro-5H-4
  • Step 4 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-3-methyl-4- (trifluoromethyl)aniline [1093] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]hepta
  • Step 2 tert-Butyl 2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5,5-dimethyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1098] Under nitrogen, to a solution of tert-butyl 2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5,5-dimethyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11
  • Step 3 tert-Butyl 2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5,5-dimethyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate [1100] Under nitrogen, to a solution of tert-butyl 2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5,5-dimethyl-12-(methylsulfonyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-penta
  • Step 4 2-Fluoro-5-(1-fluoro-5,5-dimethyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-3-methyl-4- (trifluoromethyl)aniline
  • Step 1 tert-Butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-1-fluoro-12-(methylthio)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1105] Under nitrogen, a solution of tert-butyl (5aS,6S,9R)-5-(((tert-butyldiphenylsilyl) oxy) methyl) -2-chloro-1-fluoro-12-(methylthio)-5a,6,7,8,9,10-hexa
  • Step 2 tert-Butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-1-fluoro-12-(methylsulfonyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1107] Under nitrogen, to a solution of tert-butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)- 4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-5-(((tert-butyl)-5-(
  • Step 3 tert-Butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-1-fluoro-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1109] Under nitrogen, to a solution of tert-butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)- 4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-1-fluoro-5a
  • Step 4 ((5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-5- yl)methanol [1111] A solution of tert-butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-1-fluoro-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-penta
  • Step 2 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-(1-methyl-1,6- diazaspiro[3.3]heptan-6-yl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza[6,9]methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline [1116] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(1-methyl-1,6-diazaspiro[3.3]heptan-6-yl)- 5a,6,7,
  • Example 24 Compound 49: 1-((5R,5aS,6S,9R)-2-(5-amino-3-fluoro-2- (trifluoromethyl)phenyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-N,N,3-trimethylazetidin-3- amine
  • Step 1 tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-3-fluoro-2- (trifluoromethyl)phenyl)-1-fluoro-12-(methylthio)-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1120] Under nitrogen, a solution of tert-butyl (5R,5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)- 5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methan
  • Step 2 tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-3-fluoro-2- (trifluoromethyl) phenyl)-1-fluoro-12-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate [1122] Under nitrogen, to a solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-3-fluoro-2-(trifluoromethyl)phenyl)-1-fluoro-12-(methylthio)-5-(trifluoromethyl)- 5a,6,7
  • Step 3 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-3-fluoro-2- (trifluoromethyl) phenyl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab]heptalene-14-carboxylate [1124] To a solution of N,N,3-trimethylazetidin-3-amine hydrochloride (75.2 mg, 0.499 mmol) and DIPEA (81.4 mg, 0.631 mmol) in tetrahydrofuran (5 mL) was added tert-butyl (5R,5a
  • Step 4 1-((5R,5aS,6S,9R)-2-(5-amino-3-fluoro-2-(trifluoromethyl) phenyl)-1-fluoro-5- (trifluoromethyl) -5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab] heptalen-12-yl)-N, N,3-trimethylazetidin-3-amine [1126] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-3-fluoro-2- (trifluoromethyl) phenyl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5- (trifluoromethyl)-5
  • Step 1 tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-4-methyl-3- (trifluoromethyl) pyridin-2-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate [1129] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- (methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-4-methyl-3- (trifluoromethyl) pyridin-2-yl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1131] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10- hexahydr
  • Step 3 tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-4-methyl-3- (trifluoromethyl) pyridin-2-yl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1133] A solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-4-methyl-3- (trifluoromethyl) pyridin-2-yl)-1-fluoro-5-methyl-12-(methylsulfonyl
  • Step 4 6-((5S,5aS,6S,9R)-12-(3-(Dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-4-methyl-5-(trifluoromethyl)pyridin-2-amine [1135] A solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-5-iodo-6- methylpyrimidin-4-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1141] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl) amino)-6- methylpyrimidin-4-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-
  • Step 3 tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl) amino)-6-methyl-5- (trifluoromethyl) pyrimidin-4-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1143] Under nitrogen, to a mixture of Cu(O2CCF2SO2F)2 (653 mg, 1.57 mmol) and Cu (100 mg, 1.57 mmol) was added a solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-5- iodo-6-methylpyrimidin-4
  • Step 4 tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-6-methyl-5- (trifluoromethyl) pyrimidin-4-yl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1145] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-6-methyl-5- (trifluoromethyl)pyrimidin-4-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro
  • Step 5 tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl) amino)-6-methyl-5- (trifluoromethyl)pyrimidin-4-yl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1147] A solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-6-methyl-5- (trifluoromethyl)pyrimidin-4-yl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5
  • Step 6 4-((5S,5aS,6S,9R)-12-(3-(Dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-6-methyl-5-(trifluoromethyl)pyrimidin-2-amine [1149] A solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-6-methyl-5- (trifluoromethyl)pyrimidin-4-yl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-he
  • Example 27 Compound 56: 5-((5S,5aS,6S,9R)-12-((1-((Dimethylamino) methyl) cyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline [1151] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((1-((dimethylamino)methyl)cyclopropyl)methoxy)-1-fluoro-5-methyl-
  • Step 2 5-((5S,5aS,6S,9R)-12-((1-((Dimethylamino)methyl)cyclopropyl)methoxy)-1-fluoro- 5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline [1154] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((1-((dimethylamino)methyl)cyclopropyl)methoxy)-1-fluoro- 5-methyl-5a,6,7,8,9
  • reaction mixture was bubbled with NH 3 gas (generated in situ by dropping aqueous ammonia onto solid NaOH) for 1 minute at -10°C and stirred for 30 minutes at room temperature.
  • NH 3 gas generated in situ by dropping aqueous ammonia onto solid NaOH
  • the reaction mixture was diluted with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (180 mg, 90.2% yield) as a brown solid.
  • LC-MS: (ESI, m/z): [M+H] + 932.
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-12-((1-(acetamidomethyl)cyclopropyl)methoxy)-2-(5- (bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1159] To a solution of tert-butyl (5S,5aS,6S,9R)-12-((1-(aminomethyl)cyclopropyl)methoxy)-2- (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluor
  • Step 3 N-((1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)cyclopropyl)methyl)acetamide [1161] A solution of tert-butyl (5S,5aS,6S,9R)-12-((1-(acetamidomethyl)cyclopropyl)methoxy)-2- (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,
  • Example 29 – Compound 58 5-((5S,5aS,6S,9R)-12-(3-(Dimethylamino)-2,2- difluoropropoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline [1163] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-chloro-12-(3-(dimethylamino)-2,2-difluoropropoxy)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanona
  • tert-butyl (5S,5aS,6S,9R)-2- chloro-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate 200 mg, 0.390 mmol, intermediate 6) was added and stirred for 1 hour at room temperature. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate.
  • Step 3 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-(3-(dimethylamino)-2,2-difluoropropoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1166] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-12-(3-(dimethylamino)- 2,2-difluoropropoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5
  • Step 4 5-((5S,5aS,6S,9R)-12-(3-(Dimethylamino)-2,2-difluoropropoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10- hexahydro -5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen- 2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline [1168] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-(3-(dimethylamino)-2,2-difluoropropoxy)-1-fluoro-5-methyl- 5a,6,7,8,9
  • Example 30 Compound 61: 4-((5S,5aS,6S,9R)-12-((1-(((2,2-Difluoroethyl) (methyl)amino) methyl) cyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-6-methyl-5- (trifluoromethyl)pyridin-2-amine
  • Step 1 tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl) pyridin-4-yl)-12-((1-(((tert-butyldimethylsilyl)oxy) methyl) cyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate [1172] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-12-((1-(((tert- butyldimethylsilyl)oxy)methyl)cyclopropyl)methoxy)-2-chloro-1
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-1-fluoro-12-((1-(hydroxymethyl)cyclopropyl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1174] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-12-((1-(((tert-butyldimethylsily
  • Step 3 tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-12-((1-(((2,2- difluoroethyl)(methyl)amino)methyl)cyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1176] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3-(trifluoromethyl)pyridin-4-yl)-1
  • Step 4 4-((5S,5aS,6S,9R)-12-((1-(((2,2-difluoroethyl) (methyl)amino)methyl) cyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-2-yl)-6-methyl-5-(trifluoromethyl)pyridin-2-amine [1178] A solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-12-((1-(((2,2-difluoroethyl)(methyl)amino)methyl)
  • Step 1 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((1-(hydroxymethyl)cyclopropyl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1181] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((1-(hydroxymethyl)cyclo
  • Step 2 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((1-(oxiran-2-yl)cyclopropyl)methoxy)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1183] Under nitrogen, to a solution of trimethylsulfonium iodide (142 mg, 0.700 mmol) in dimethyl sulfoxide (6 mL) was added NaH (60% dispersion in mineral oil, 22.4 mg) at 0 °C and stirred for 1 hour.
  • Step 3 tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((1-(1-hydroxy-2-(methylamino) ethyl) cyclopropyl) methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate [1185] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluor
  • Step 1 tert-Butyl (5S,5aS,6S,9R)-12-((1-(((tert-butyldimethylsilyl)oxy) methyl) cyclopropyl) methoxy) -2-chloro-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza -6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1190] To an ice-cooled solution of (1-(((tert-butyldimethylsilyl) oxy) methyl)cyclopropyl) methanol (842 mg, 3.89 mmol) in tetrahydrofuran (10 mL) was added NaH (60% dispersion in mineral oil, 390 mg, 9.75 mmol) portionwise.

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Abstract

Provided herein are aza-tetracyclic oxazepinyl compounds useful in the treatment of cancers.

Description

Attorney Dkt. No.: 000218-0078-WO1 AZA-TETRACYCLIC OXAZEPINE INHIBITORS OF KRAS-G12D CROSS-REFERENCE TO RELATED APPLICATIONS [0001] This application claims priority to and the benefit of United States Provisional Application No.63/602,323 filed November 22, 2023, which is incorporated herein by reference in its entirety. BACKGROUND [0002] Ras is a small GTP-binding protein that functions as a nucleotide-dependent switch for central growth signaling pathways. In response to extracellular signals, Ras is converted from a GDP-bound (RasGDP) to a GTP-bound (RasGTP) state, as catalyzed by guanine nucleotide exchange factors (GEFs), notably the SOS1 protein. Active RasGTP mediates its diverse growth-stimulating functions through its direct interactions with effectors including Raf, PI3K, and Ral guanine nucleotide dissociation stimulator. The intrinsic GTPase activity of Ras then hydrolyzes GTP to GDP to terminate Ras signaling. The Ras GTPase activity can be further accelerated by its interactions with GTPase-activating proteins (GAPs), including the neurofibromin 1 tumor suppressor. [0003] Mutant Ras has a reduced GTPase activity, which prolongs its activated state, thereby promoting Ras-dependent signaling and cancer cell survival or growth. Mutation in Ras that affects its ability to interact with GAP or to convert GTP back to GDP will result in a prolonged activation of the protein and consequently a prolonged signal to the cell telling it to continue to grow and divide. Because these signals result in cell growth and division, overactive RAS signaling may ultimately lead to cancer. Mutations in any one of the three main isoforms of RAS (HRas, NRas, or KRas) genes are common events in human tumorigenesis. Among the three Ras isoforms (K, N, and H), KRas is most frequently mutated. [0004] The most common KRas mutations are found at residue G12 and G13 in the P-loop and at residue Q61. G12D is a frequent mutation of KRas gene (glycine-12 to aspartate). Mutations of Ras in cancer are associated with poor prognosis. Inactivation of oncogenic Ras in mice results in tumor shrinkage. Thus, Ras is widely considered an oncology target of exceptional importance. [0005] Accordingly, there is a pressing need for therapies for G12D mutant KRas mediated cancers. BRIEF SUMMARY [0006] Provided herein are solutions to the problems above and other problems in the art. [0007] In a first aspect provided herein is a compound of formula (I) or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein. [0008] In a second aspect provided herein is a compound of formula (II) or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein. [0009] In a third aspect provided herein is a compound of formula (III) or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein. [0010] In another aspect provided herein is a compound or pharmaceutically acceptable salt thereof as set forth in Table 1. [0011] In another aspect provided herein is a pharmaceutical composition comprising a compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein. [0012] In another aspect provided herein is a method of treating a cancer comprising a KRas mutation, the method comprising administering to a patient having such cancer, a compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein. [0013] In another aspect provided herein is a method for regulating activity of a KRas mutant protein, the method comprising reacting the mutant protein with a compound, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein. [0014] In another aspect provided herein is a method for inhibiting proliferation of a cell population, the method comprising contacting the cell population with a compound, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein. [0015] In another aspect provided herein is a method for inhibiting tumor metastasis comprising administering to an individual in need thereof a therapeutically effective amount of the compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein or a pharmaceutical composition as described herein to a subject in need thereof. [0016] In another aspect provided herein is method for preparing a labeled KRas G12D mutant protein, the method comprising reacting a KRas G12D mutant protein with a labeled compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, as described here to result in the labeled KRas G12D mutant protein. DETAILED DESCRIPTION Definitions [0017] Disclosed herein are 6-aza tetracyclic oxazepine compounds as described herein or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof and pharmaceutical compositions thereof that, in certain embodiments, are inhibitors or modulators of mutant KRas. In certain instances, such compounds and compositions are inhibitors or modulators of mutant G12D KRas as provided herein. The compounds and compositions described herein are useful in treating diseases and disorders mediated by mutant KRas, including KRasG12D mutations. [0018] While the disclosure herein provides enumerated embodiments, it is understood that they are not intended to limit the compounds and methods described herein to those embodiments. On the contrary, the disclosure is intended to cover all alternatives, modifications, and equivalents that can be included within the scope of the present disclosure as defined by the claims. [0019] Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety. The nomenclature used in this Application is based on IUPAC systematic nomenclature, unless indicated otherwise. [0020] The following definitions are provided to facilitate understanding of certain terms used frequently herein and are not meant to limit the scope of the present disclosure. All references referred to herein are incorporated by reference in their entirety. [0021] The terms “halogen” and “halo” are used interchangeably and refer to F, Cl, Br or I. Additionally, terms such as "haloalkyl," are meant to include monohaloalkyl, polyhaloalkyl, and perhaloalkyl. [0022] The term "alkyl" refers to a saturated linear or branched-chain monovalent hydrocarbon radical. In one example, the alkyl radical is one to eighteen carbon atoms (C1-18). In other examples, the alkyl radical is C1-12, C1-10, C1-8, C1-6, C1-5, C1-4, or C1-3. Examples of alkyl groups include methyl (Me, –CH3), ethyl (Et, –CH2CH3), 1-propyl (n-Pr, n-propyl, –CH2CH2CH3), 2-propyl (i-Pr, i-propyl, –CH(CH3)2), 1-butyl (n-Bu, n-butyl, –CH2CH2CH2CH3), 2-methyl-1-propyl (i-Bu, i-butyl, – CH2CH(CH3)2), 2-butyl (s-Bu, s-butyl, –CH(CH3)CH2CH3), 2-methyl-2-propyl (t-Bu, t-butyl, – C(CH3)3), 1-pentyl (n-pentyl, –CH2CH2CH2CH2CH3), 2-pentyl (–CH(CH3)CH2CH2CH3), 3-pentyl (– CH(CH2CH3)2), 2-methyl-2-butyl (-C(CH3)2CH2CH3), 3-methyl-2-butyl (–CH(CH3)CH(CH3)2), 3- methyl-1-butyl (–CH2CH2CH(CH3)2), 2-methyl-1-butyl (–CH2CH(CH3)CH2CH3), 1-hexyl (– CH2CH2CH2CH2CH2CH3), 2-hexyl (–CH(CH3)CH2CH2CH2CH3), 3-hexyl (– CH(CH2CH3)(CH2CH2CH3)), 2-methyl-2-pentyl (–C(CH3)2CH2CH2CH3), 3-methyl-2-pentyl (– CH(CH3)CH(CH3)CH2CH3), 4-methyl-2-pentyl (–CH(CH3)CH2CH(CH3)2), 3-methyl-3-pentyl (– C(CH3)(CH2CH3)2), 2-methyl-3-pentyl (–CH(CH2CH3)CH(CH3)2), 2,3-dimethyl-2-butyl (– C(CH3)2CH(CH3)2), 3,3-dimethyl-2-butyl (–CH(CH3)C(CH3)3, 1-heptyl and 1-octyl. [0023] The term "alkoxy" refers to –O–alkyl. [0024] The terms “cyano” or “nitrile” refers to –C≡N or –CN. [0025] The term "haloalkoxy" refers to –O–haloalkyl. [0026] The terms "hydroxy" and “hydroxyl” refer to –OH. [0027] The term “alkylidene” refers to linear or branched-chain monovalent hydrocarbon radical having formula =CR’R”, where R’ and R" can be the same or different. In one example, an alkylidene radical is 1 to 6 carbons (C1-6). In another example, the alkylidene radical is C1-3, C1-2, or C1. Exemplary alkylidenes include, but are not limited to, methylidene (=CH2), ethylidene (=CHCH3), and propylidene (=CH-CH2-CH3). [0028] The term "alkenyl" refers to linear or branched-chain monovalent hydrocarbon radical with at least one carbon-carbon double bond and includes radicals having "cis" and "trans" orientations, or alternatively, "E" and "Z" orientations. In one example, the alkenyl radical is two to eighteen carbon atoms (C2-18). In other examples, the alkenyl radical is C2-12, C2-10, C2-8, C2-6, or C2-3. Examples include, but are not limited to, ethenyl or vinyl (–CH=CH2), prop-1-enyl (–CH=CHCH3), prop-2-enyl (–CH2CH=CH2), 2-methylprop-1-enyl, but-1-enyl, but-2-enyl, but-3-enyl, buta-1,3- dienyl, 2-methylbuta-1,3-diene, hex-1-enyl, hex-2-enyl, hex-3-enyl, hex-4-enyl, and hexa-1,3-dienyl. [0029] The term "alkynyl" refers to a linear or branched monovalent hydrocarbon radical with at least one carbon-carbon, triple bond. In one example, the alkynyl radical is two to eighteen carbon atoms (C2-18). In other examples, the alkynyl radical is C2-12, C2-10, C2-8, C2-6, or C2-3. Examples include, but are not limited to, ethynyl (–CºCH), prop-1-ynyl (–CºCCH3), prop-2-ynyl (propargyl, –CH2CºCH), but-1-ynyl, but-2-ynyl, and but-3-ynyl. [0030] The term "alkylene” refers to a saturated, branched, or straight chain hydrocarbon group having two monovalent radical centers derived by the removal of two hydrogen atoms from the same or two different carbon atoms of a parent alkane. In one example, the divalent alkylene group is one to eighteen carbon atoms (C1-18). In other examples, the divalent alkylene group is C1-12, C1-10, C1-8, C1-6, C1-5, C1-4, or C1-3. Example alkylene groups include methylene (–CH2–), 1,1-ethyl (–CH(CH3)–), (1,2-ethyl (–CH2CH2–), 1,1-propyl (–CH(CH2CH3)–), 2,2-propyl (–C(CH3)2–), 1,2- propyl (–CH(CH3)CH2–), 1,3-propyl (–CH2CH2CH2–), 1,1-dimethyleth-1,2-yl (–C(CH3)2CH2–), 1,4- butyl (–CH2CH2CH2CH2–), and the like. [0031] Cyclic (ring-containing) moieties comprise atoms bonded together in a ring, and have one or more substituents other than hydrogen atoms bonded to one or more ring atoms. Each atom in the ring defines a vertex of a polygon. [0032] Two ring atoms are adjacent to one another in that ring if they are bonded to one another in the ring. In rings having 4 or more ring atoms, adjacent atoms are bonded to one another but to no other atom in the same ring. In a three-membered ring, each atom is necessarily bonded to each other atom in the ring. Two adjacent ring atoms define one “edge” of the ring. [0033] Two or more cyclic moieties may join to one another in one of several ways to form ring systems that comprise more than one ring. [0034] Two rings are fused to one another if two ring atoms are adjacent to one another in both rings and are shared by both rings. Such rings are said to share an “edge.” [0035] Spirocyclic ring systems comprise a pair of rings that share a single vertex. Such systems contain a ring junction at which the two rings share a single ring atom. [0036] Bridged ring systems contain at least a pair of rings in which two or more non-adjacent ring atoms are shared by two or more rings. The two non-adjacent ring atoms in question are referred to as “bridgehead” atoms and the pair of bridgehead atoms are members of three different rings. Examples of carbocyclic radicals containing bridged bicyclic rings are norbornyl and adamantyl. [0037] Chained ring systems contain two or more rings that are joined to one another but do not share any ring atom in common: one ring is a substituent of the other, and vice versa. Each ring in the chained ring system may independently be a carbocycle or a heterocycle and may be aromatic, partially unsaturated or saturated. Biphenyl is an example of a chained ring system. [0038] Ring systems may contain pairs of rings that are fused or chained to one another, spiro- joined, or bridged, or in the case of three or more rings, joined in combinations of ways thereof. [0039] The term “carbocycle” as used herein refers to aromatic, saturated or unsaturated cyclic univalent hydrocarbon groups having the number of annular (i.e., ring) carbon atoms designated (i.e., C3-10 means three to ten annular carbon atoms). Carbocyclic groups have a single ring (“monocycles”) or more than one ring (“bicycles”, “tricycles”, or polycycles, more generally). Two or more carbocyclic rings may be joined to one another by fused, spiro, bridged, or chained connections as further described elsewhere herein. [0040] It is intended herein that the term carbocycle encompasses radicals having one or more adjacent pairs of ring atoms between which are double bonds, and that, where more than one such double bond is present, the double bonds may or may not form a conjugated system within the ring. Thus, carbocycles may be more specifically designated according to whether they are fully saturated (“cycloalkyl”), unsaturated at least in part (“cycloalkenyl”), or fully conjugated, (“aromatic” or “aryl”). Cycloalkyl groups are fully saturated radicals and are derived by the removal of one hydrogen atom from one carbon atom of a parent cycloalkane. Particular cycloalkyl groups are those having from 3 to 12 annular carbon atoms (C3-12-cycloalkyl). A preferred cycloalkyl is a monocyclic hydrocarbon having from 3 to 8 annular carbon atoms (a “C3-8-cycloalkyl”), or having 3 to 6 carbon atoms (a “C3-6-cycloalkyl”). In other examples, cycloalkyl is C3-4, C3-5, C3-7, C3-8, C3-10, C3-10, or C5-10. In other examples, the cycloalkyl group, as a monocycle, is C3-4, C3-8, C3-6, or C5-6. In another example, the cycloalkyl group, as a spiro system, is C5-12. In another example, the cycloalkyl group, as a bicycle, is C7-C12. Single ring cycloalkyl radicals have formula CnH2n−1. Examples of cycloalkyl groups include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, and cycloheptyl. Cycloalkenyl groups have one or more double bonds between adjacent ring carbon atoms. Examples of cycloalkenyl groups include 1-cyclohex-1-enyl, and 1-cyclohex-3- enyl. Examples of monocyclic cycloalkyl include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, cyclononyl, cyclodecyl, cycloundecyl and cyclododecyl. Exemplary arrangements of bicyclic cycloalkyls having 7 to 12 ring atoms include, but are not limited to, [4,4], [4,5], [5,5], [5,6] or [6,6] ring systems. Exemplary bridged bicyclic cycloalkyls include, but are not limited to, bicyclo[2.2.1]heptane, bicyclo[2.2.2]octane and bicyclo[3.2.2]nonane. Examples of spirocycloalkyl include, spiro[2.2]pentane, spiro[2.3]hexane, spiro[2.4]heptane, spiro[2.5]octane and spiro[4.5]decane. [0041] “Aryl” as used herein refers to a carbocyclic group having an aromatic single ring (e.g., phenyl) or multiple aromatic rings fused to one another (e.g., naphthyl). Preferably, an aryl group comprises from 6 to 20 carbon atoms, more preferably between 6 to 12 carbon atoms. Particularly preferred aryl groups are those having from 6 to 14 annular carbon atoms (a “C6-14-aryl”). The term aromatic is used herein as it is typically used in organic chemistry, meaning, with a few understood exceptions, rings and ring systems in which the annular atoms contribute a total of (4n+2) pi electrons to a set of delocalized molecular orbitals, where n is a non-zero positive integer. [0042] Typical aryl groups include, but are not limited to, groups derived from fused ring systems that comprise one or more aromatic rings, or conjugated ring systems, such as but not limited to aceanthrylene, acenaphthylene, acephenanthrylene, anthracene, azulene, benzene, chrysene, coronene, fluoranthene, heptaphene, hexacene, hexaphene, as-indacene, s-indacene, indene, naphthalene (hexalene), octacene, octaphene, octalene, ovalene, pentacene, pentalene, pentaphene, perylene, phenalene, phenanthrene, picene, pleiadene, pyrene, pyranthrene, rubicene, tetraphenylene, triphenylene, and trinaphthalene. [0043] The terms “heterocyclic group”, “heterocyclic”, “heterocycle”, “heterocyclyl”, or “heterocyclo” are used interchangeably and refer to any mono-, bi-, tricyclic, chained, fused, spiro or bridged, saturated, partially saturated or unsaturated, non-aromatic ring system, having 3 to 20 ring atoms, where the ring atoms are carbon, and at least one atom in the ring or ring system is a heteroatom selected from nitrogen, sulfur or oxygen. If any ring atom of a cyclic system is a heteroatom, that system is a heterocycle, regardless of the point of attachment of the cyclic system to the rest of the molecule. In one example, heterocyclyl includes 3-10 ring atoms (“members”) and includes monocycles, bicycles, tricycles, spiro, and bridged ring systems, wherein the ring atoms are carbon, where at least one atom in the ring or ring system is a heteroatom selected from nitrogen, sulfur or oxygen. In other examples, heterocyclyl includes 4-10 or 5-10 ring atoms. In one example, heterocyclyl includes 1 to 4 heteroatoms. In one example, heterocyclyl includes 1 to 3 heteroatoms. In another example, heterocyclyl includes 3- to 7-membered monocycles having 1-2, 1-3 or 1-4 heteroatoms selected from nitrogen, sulfur or oxygen. In another example, heterocyclyl includes 4- to 6-membered monocycles having 1-2, 1-3 or 1-4 heteroatoms selected from nitrogen, sulfur or oxygen. In another example, heterocyclyl includes 3-membered monocycles. In another example, heterocyclyl includes 4-membered monocycles. In another example, heterocyclyl includes 5-6 membered monocycles. In some embodiments, a heterocycloalkyl includes at least one nitrogen. In one example, the heterocyclyl group includes 0 to 3 double bonds. Any nitrogen or sulfur heteroatom may optionally be oxidized (e.g., NO, SO, SO2), and any nitrogen heteroatom may optionally be quaternized (e.g., [NR4]+Cl-, [NR4]+OH-). Example heterocycles are oxiranyl, aziridinyl, thiiranyl, azetidinyl, oxetanyl, thietanyl, 1,2-dithietanyl, 1,3-dithietanyl, pyrrolidinyl, dihydro-1H-pyrrolyl, dihydrofuranyl, tetrahydrofuranyl, dihydrothienyl, tetrahydrothienyl, imidazolidinyl, piperidinyl, piperazinyl, isoquinolinyl, tetrahydroisoquinolinyl, morpholinyl, thiomorpholinyl, 1,1-dioxo-thiomorpholinyl, dihydropyranyl, tetrahydropyranyl, hexahydrothiopyranyl, hexahydropyrimidinyl, oxazinanyl, thiazinanyl, thioxanyl, homopiperazinyl, homopiperidinyl, azepanyl, oxepanyl, thiepanyl, oxazepinyl, oxazepanyl, diazepanyl, 1,4- diazepanyl, diazepinyl, thiazepinyl, thiazepanyl, tetrahydrothiopyranyl, oxazolidinyl, thiazolidinyl, isothiazolidinyl, 1,1-dioxoisothiazolidinonyl, 1,1-dioxoisothiazolyl, oxazolidinonyl, imidazolidinonyl, 4,5,6,7-tetrahydro[2H]indazolyl, tetrahydrobenzoimidazolyl, 4,5,6,7- tetrahydrobenzo[d]imidazolyl, thiazinyl, oxazinyl, thiadiazinyl, oxadiazinyl, dithiazinyl, dioxazinyl, oxathiazinyl, thiatriazinyl, oxatriazinyl, dithiadiazinyl, imidazolinyl, dihydropyrimidyl, tetrahydropyrimidyl, 1-pyrrolinyl, 2-pyrrolinyl, 3-pyrrolinyl, indolinyl, thiapyranyl, 2H-pyranyl, 4H- pyranyl, dioxanyl, 1,3-dioxolanyl, pyrazolinyl, pyrazolidinyl, dithianyl, dithiolanyl, pyrimidinonyl, pyrimidindionyl, pyrimidin-2,4-dionyl, piperazinonyl, piperazindionyl, pyrazolidinylimidazolinyl, 3- azabicyclo[3.1.0]hexanyl, 3,6-diazabicyclo[3.1.1]heptanyl, 6-azabicyclo[3.1.1]heptanyl, 3- azabicyclo[3.1.1]heptanyl, 3-azabicyclo[4.1.0]heptanyl, azabicyclo[2.2.2]hexanyl, 2- azabicyclo[3.2.1]octanyl, 8-azabicyclo[3.2.1]octanyl, 2-azabicyclo[2.2.2]octanyl, 8- azabicyclo[2.2.2]octanyl, 7-oxabicyclo[2.2.1]heptane, azaspiro[3.5]nonanyl, azaspiro[2.5]octanyl, azaspiro[4.5]decanyl, 1-azaspiro[4.5]decan-2-onyl, azaspiro[5.5]undecanyl, tetrahydroindolyl, octahydroindolyl, tetrahydroisoindolyl, tetrahydroindazolyl, 1,1-dioxohexahydrothiopyranyl. [0044] In particular embodiments, a heterocyclyl group or a heteroaryl group is attached at a carbon atom of the heterocyclyl group or the heteroaryl group. By way of example, carbon bonded heterocyclyl groups include bonding arrangements at position 2, 3, 4, 5, or 6 of a pyridine ring, position 3, 4, 5, or 6 of a pyridazine ring, position 2, 4, 5, or 6 of a pyrimidine ring, position 2, 3, 5, or 6 of a pyrazine ring, position 2, 3, 4, or 5 of a furan, tetrahydrofuran, thiofuran, thiophene, pyrrole or tetrahydropyrrole ring, position 2, 4, or 5 of an oxazole, imidazole or thiazole ring, position 3, 4, or 5 of an isoxazole, pyrazole, or isothiazole ring, position 2 or 3 of an aziridine ring, position 2, 3, or 4 of an azetidine ring, position 2, 3, 4, 5, 6, 7, or 8 of a quinoline ring or position 1, 3, 4, 5, 6, 7, or 8 of an isoquinoline ring. [0045] In certain embodiments, the heterocyclyl group or heteroaryl group is N-attached. By way of example, nitrogen bonded heterocyclyl or heteroaryl groups include bonding arrangements at position 1 of an aziridine, azetidine, pyrrole, pyrrolidine, 2-pyrroline, 3-pyrroline, imidazole, imidazolidine, 2-imidazoline, 3-imidazoline, pyrazole, pyrazoline, 2-pyrazoline, 3-pyrazoline, piperidine, piperazine, indole, indoline, 1H-indazole, position 2 of an isoindole, or isoindoline, position 4 of a morpholine, and position 9 of a carbazole, or β-carboline. [0046] A heterocyclic ring may make fused, spiro, or bridged, connections or make any combination of such connections to one or more other rings. [0047] “Heteroaryl” or “heteroaromatic”, as used herein, refers to an aromatic cyclic group having from 1 to 14 ring carbon atoms and at least one ring heteroatom, including but not limited to heteroatoms such as nitrogen, phosphorus, oxygen and sulfur. The term refers to a monovalent heteroaromatic radical derived by the removal of one hydrogen atom from a single ring atom of a parent heteroaromatic ring system. A heteroaryl group may have a single ring (e.g., pyridyl, furyl) or multiple fused rings (e.g., indolizinyl, benzothienyl). Particular heteroaryl groups are 5- to 14- membered rings having 1 to 12 annular (i.e., ring) carbon atoms and 1 to 6 annular (i.e., ring) heteroatoms independently selected from nitrogen, phosphorus, oxygen and sulfur; 5- to 10- membered rings having 1 to 8 annular carbon atoms and 1 to 4 annular heteroatoms independently selected from nitrogen, phosphorus, oxygen and sulfur; and 5-, 6- or 7-membered rings having 1 to 5 annular carbon atoms and 1 to 4 annular heteroatoms independently selected from nitrogen, oxygen and sulfur In one variation, heteroaryl include monocyclic aromatic 5-, 6- or 7-membered rings having from 1 to 6 annular carbon atoms and 1 to 4 annular heteroatoms independently selected from nitrogen, oxygen and sulfur. In another variation, heteroaryl includes polycyclic aromatic rings having from 1 to 12 annular carbon atoms and 1 to 6 annular heteroatoms independently selected from nitrogen, phosphorus, oxygen and sulfur. [0048] Typical heteroaryl groups include, but are not limited to, groups derived from acridine, arsindole, carbazole, p-carboline, chromane, chromene, cinnoline, furan, imidazole, indazole, indole, indoline, indolizine, isobenzofuran, isochromene, isoindole, isoindoline, isoquinoline, isothiazole, isoxazole, naphthyridine, oxadiazole, oxazole, perimidine, phenanthridine, phenanthroline, phenazine, phthalazine, pteridine, purine, pyran, pyrazine, pyrazole, pyridazine, pyridine, pyridone, pyrimidine, pyrrole, pyrrolizine, quinazoline, quinoline, quinolizine, quinoxaline, tetrazole, thiadiazole, thiazole, thiophene, triazole, xanthene, and the like. Preferred heteroaryl groups are thiophene, pyrrole, benzothiophene, benzofuran, indole, pyridine, quinoline, imidazole, oxazole and pyrazine, and those derived therefrom. [0049] Rings of different categories may be connected to one another, such as by fused, spiro, or bridged, connections, or by combinations thereof. Such a ring system can be referred to as a “mixed” ring system. [0050] For example, at least one ring of a multiple ring system can be aromatic on its own, though one or more of the remaining fused rings may be not aromatic. Examples of fused ring systems that contain at least one aromatic ring and at least one partially saturated ring include fluorene, indane, and biphenylene. [0051] A mixed ring system having more than one ring where at least one ring is aromatic and at least one ring is non-aromatic may be connected to another structure by bonding to either an aromatic ring atom or a non-aromatic ring atom. [0052] A heteroaryl group having more than one ring where at least one ring is non-aromatic may be connected to another structure at either an aromatic ring position or at a non-aromatic ring position. [0053] Similarly, carbocyclic and heterocyclic groups may join to one another in one of several ways to form ring systems that comprise more than one ring. [0054] “Heteroatom” refers to any atom other than carbon or hydrogen. Typical heteroatoms found in small organic molecules are selected from: nitrogen, oxygen, fluorine, phosphorous, sulfur, chlorine, and bromine. It is understood by those of skill in the art that where the term heteroatom used to denote a member of a ring (e.g., a heteroaromatic ring) then monovalent heteroatoms such as halogen are excluded. [0055] “Fused” refers to any ring structure described herein that shares one or more atoms (e.g., carbon or nitrogen atoms) with an existing ring structure in the compounds described herein. [0056] The term “acyl” refers to a carbonyl containing substituent represented by the formula – C(=O)-R in which R is a substituent such as hydrogen, alkyl, cycloalkyl, aryl or heterocyclyl, wherein the alkyl, cycloalkyl, aryl and heterocyclyl are as defined herein. Acyl groups include alkanoyl (e.g., acetyl), aroyl (e.g., benzoyl), and heteroaroyl (e.g., pyridinoyl). [0057] The term “haloalkyl” refers to an alkyl chain in which one or more hydrogen has been replaced by a halogen. Examples of haloalkyls are trifluoromethyl, difluoromethyl, and fluoromethyl. A substituted haloalkyl refers to a haloalkyl having a moiety other than a halogen. An unsubstituted haloalkyl refers to a haloalkyl substituted with no moiety other than hydrogen or halogen as described herein. [0058] “Carbenyl”, when used as a ring substituent, refers to the moiety =C, i.e., a carbon atom double-bonded to a carbon atom in a ring. It means that a single carbon atom replaces two hydrogen (or other monovalent) atoms that are bonded to a ring carbon atom and is therefore bonded to the ring carbon atom via a double bond. In general, a carbenyl may be represented as RcRdC=, where RcRc are independently either hydrogen or alkyl. [0059] “Oxo” refers to the moiety =O, i.e., an oxygen atom double-bonded to a second atom other than oxygen. When used as a ring substituent it means that a ring atom such as a carbon atom is bonded via a double bond to an oxygen atom other than a ring atom. [0060] “Sulfonyl” refers to the group -S(O)2R, where R is hydrogen, alkyl, haloalkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, aryl, heteroalkyl or heteroaryl, each of which may be optionally substituted, as defined herein. In some embodiments, R is -H, C1-C6alkyl, or C1-C6haloalkyl. [0061] “Carboxyalkyl” refers to an alkyl group terminating with a carboxylic acid moiety. Examples of carboxyalkyl, include but are not limited to carboxymethyl, carboxyethyl, carboxypropyl and the like. For example, “carboxy-C1alkyl” refers to the moiety -C(O)2H. [0062] As used herein a wavy line “ ” that intersects a bond in a chemical structure indicates the point of attachment of the atom to which the wavy bond is connected in the chemical structure to the remainder of a molecule, or to the remainder of a fragment of a molecule. [0063] In certain embodiments, divalent groups are described generically without specific bonding configurations. It is understood that the generic description is meant to include both bonding configurations, unless specified otherwise. For example, in the group R1–R2–R3, if the group R2 is described as –CH2C(O)–, then it is understood that this group can be bonded both as R1–CH2C(O)– R3, and as R1–C(O)CH2–R3, unless specified otherwise. [0064] The term “pharmaceutically acceptable” refers to molecular entities and compositions that do not produce an adverse, allergic or other untoward reaction when administered to an animal, such as, for example, a human, as appropriate. [0065] Compounds described herein may be in the form of a salt, such as a pharmaceutically acceptable salt. “Pharmaceutically acceptable salts” include both acid and base addition salts. “Pharmaceutically acceptable acid addition salt” refers to those salts which retain the biological effectiveness and properties of the free bases and which are not biologically or otherwise undesirable, formed with inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, carbonic acid, phosphoric acid and the like, and organic acids may be selected from aliphatic, cycloaliphatic, aromatic, araliphatic, heterocyclic, carboxylic, and sulfonic classes of organic acids such as formic acid, acetic acid, propionic acid, glycolic acid, gluconic acid, lactic acid, pyruvic acid, oxalic acid, malic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, aspartic acid, ascorbic acid, glutamic acid, anthranilic acid, benzoic acid, cinnamic acid, mandelic acid, embonic acid, phenylacetic acid, methanesulfonic acid, ethanesulfonic acid, benzenesulfonic acid, p-toluenesulfonic acid, salicylic acid and the like. [0066] The term “pharmaceutically acceptable base addition salts” include those derived from inorganic bases such as sodium, potassium, lithium, ammonium, calcium, magnesium, iron, zinc, copper, manganese, aluminum salts and the like. Particular base addition salts are the ammonium, potassium, sodium, calcium and magnesium salts. Salts derived from pharmaceutically acceptable organic nontoxic bases include salts of primary, secondary, and tertiary amines, substituted amines including naturally occurring substituted amines, cyclic amines and basic ion exchange resins, such as isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, ethanolamine, 2- diethylaminoethanol, tromethamine, dicyclohexylamine, lysine, arginine, histidine, caffeine, procaine, hydrabamine, choline, betaine, ethylenediamine, glucosamine, methylglucamine, theobromine, purines, piperazine, piperidine, N-ethylpiperidine, polyamine resins and the like. Particular organic non-toxic bases include isopropylamine, diethylamine, ethanolamine, tromethamine, dicyclohexylamine, choline, and caffeine. [0067] In some embodiments, a salt is selected from a hydrochloride, hydrobromide, trifluoroacetate, sulfate, phosphate, acetate, fumarate, maleate, tartrate, lactate, citrate, pyruvate, succinate, oxalate, methanesulfonate, p-toluenesulfonate, bisulfate, benzenesulfonate, ethanesulfonate, malonate, xinafoate, ascorbate, oleate, nicotinate, saccharinate, adipate, formate, glycolate, palmitate, L-lactate, D-lactate, aspartate, malate, L-tartrate, D-tartrate, stearate, furoate (e.g., 2-furoate or 3-furoate), napadisylate (naphthalene-1,5-disulfonate or naphthalene-1-(sulfonic acid)-5-sulfonate), edisylate (ethane-1,2-disulfonate or ethane-1-(sulfonic acid)-2-sulfonate), isothionate (2-hydroxyethylsulfonate), 2-mesitylenesulfonate, 2-naphthalenesulfonate, 2,5- dichlorobenzenesulfonate, D-mandelate, L-mandelate, cinnamate, benzoate, adipate, esylate, malonate, mesitylate (2-mesitylenesulfonate), napsylate (2-naphthalenesulfonate), camsylate (camphor-10-sulfonate, for example (1S)-(+)-10-camphorsulfonic acid salt), glutamate, glutarate, hippurate (2-(benzoylamino)acetate), orotate, xylate (p-xylene-2-sulfonate), and pamoic (2,2'- dihydroxy-1,1'-dinaphthylmethane-3,3'-dicarboxylate). [0068] A “sterile” formulation is aseptic or free from all living microorganisms and their spores. [0069] The term “stereoisomers” refer to compounds that have identical chemical constitution but differ with regard to the arrangement of the atoms or groups in space. Stereoisomers include diastereomers, enantiomers, atropisomers, conformers and the like. [0070] The term “chiral” refers to molecules that have the property of non-superimposability of the mirror image partner, while the term “achiral” refers to molecules which are superimposable on their mirror image partner. [0071] The term “diastereomer” refers to a stereoisomer with two or more centers of chirality and whose molecules are not mirror images of one another. Diastereomers have different physical properties, e.g., melting points, boiling points, spectral properties or biological activities. Mixtures of diastereomers may separate under high resolution analytical procedures such as electrophoresis and chromatography such as HPLC. [0072] The term “enantiomers” refers to two stereoisomers of a compound that are non- superimposable mirror images of one another. [0073] The term “atropisomers” refers to two conformers resulting from hindered rotation about a single bond where the steric strain barrier to rotation can be high enough to allow for the isolation of each conformer. [0074] Stereochemical definitions and conventions used herein generally follow S. P. Parker, Ed., McGraw-Hill Dictionary of Chemical Terms (1984) McGraw-Hill Book Company, New York; and Eliel, E. and Wilen, S., “Stereochemistry of Organic Compounds”, John Wiley & Sons, Inc., New York, 1994. Many organic compounds exist in optically active forms, i.e., they have the ability to rotate the plane of plane-polarized light. In describing an optically active compound, the prefixes D and L, or R and S, are used to denote the absolute configuration of the molecule about its chiral center(s). The prefixes d and l or (+) and (-) are employed to designate the sign of rotation of plane- polarized light by the compound, with (-) or 1 meaning that the compound is levorotatory. A compound prefixed with (+) or d is dextrorotatory. For a given chemical structure, these stereoisomers are identical except that they are mirror images of one another. A specific stereoisomer may also be referred to as an enantiomer, and a mixture of such isomers is often called an enantiomeric mixture. A 50:50 mixture of enantiomers is referred to as a racemic mixture or a racemate, which may occur where there has been no stereoselection or stereospecificity in a chemical reaction or process. The terms “racemic mixture” and “racemate” refer to an equimolar mixture of two enantiomeric species, devoid of optical activity. [0075] The term “tautomer” or “tautomeric form” refers to structural isomers of different energies that are interconvertible via a low energy barrier. For example, proton tautomers (also known as prototropic tautomers) include interconversions via migration of a proton, such as keto-enol and imine-enamine isomerizations. Valence tautomers include interconversions by reorganization of some of the bonding electrons. [0076] Certain compounds described herein can exist in unsolvated forms as well as solvated forms, including hydrated forms. A “solvate” refers to an association or complex of one or more solvent molecules and a compound described herein. Examples of solvents that form solvates include water, isopropanol, ethanol, methanol, DMSO, ethyl acetate, acetic acid, and ethanolamine. Certain compounds described herein can exist in multiple crystalline or amorphous forms. In general, all physical forms are contemplated herein. The term "hydrate" refers to the complex where the solvent molecule is water. [0077] The compounds and pharmaceutically acceptable salts thereof described herein also embrace isotopically-labeled compounds that are identical to those recited herein, but for the fact that one or more atoms are replaced by an atom having an atomic mass or mass number different from the atomic mass or mass number usually found in nature. All isotopes of any particular atom or element as specified are contemplated herein, and their uses. Exemplary isotopes that can be incorporated into compounds and pharmaceutically acceptable salts thereof described herein include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorus, sulfur, fluorine, chlorine and iodine, such as 2H, 3H, 11C, 13C, 14C, 13N, 15N, 15O, 17O, 18O, 32P, 33P, 35S, 18F, 36Cl, 123I, and 125I. Certain isotopically-labeled compounds or pharmaceutical acceptable salts thereof described herein (e.g., those labeled with 3H and 14C) are useful in compound and/or substrate tissue distribution assays. Tritiated (3H) and carbon-14 (14C) isotopes are useful for their ease of preparation and detectability. Further, substitution with heavier isotopes such as deuterium (i.e., 2H) may afford certain therapeutic advantages resulting from greater metabolic stability (e.g., increased in vivo half-life or reduced dosage requirements) and hence may be preferred in some circumstances. Positron emitting isotopes such as 15O, 13N, 11C and 18F are useful for positron emission tomography (PET) studies to examine substrate receptor occupancy. Isotopically labeled compounds or pharmaceutical acceptable salts thereof described herein can generally be prepared by following procedures analogous to those disclosed in the Examples herein below, by substituting an isotopically labeled reagent for a non- isotopically labeled reagent. [0078] Compounds and pharmaceutically acceptable salts thereof described herein may contain one or more asymmetric carbon atoms. Accordingly, the compounds may exist as diastereomers, enantiomers or mixtures thereof. The syntheses of the compounds may employ racemates, diastereomers or enantiomers as starting materials or as intermediates. Mixtures of particular diastereomeric compounds may be separated, or enriched in one or more particular diastereomers, by chromatographic or crystallization methods. Similarly, enantiomeric mixtures may be separated, or enantiomerically enriched, using the same techniques or others known in the art. Each of the asymmetric carbon or nitrogen atoms may be in the R or S configuration and both of these configurations are contemplated herein. [0079] In the structures shown herein, where the stereochemistry of any particular chiral atom is not specified, then all stereoisomers are contemplated and included. Where stereochemistry is specified by a solid wedge or dashed line representing a particular configuration, then that stereoisomer is so specified and defined. Unless otherwise specified, if solid wedges or dashed lines are used, relative stereochemistry is intended. [0080] A “subject,” “individual,” or “patient” is a vertebrate and are used interchangeably herein. In certain embodiments, the vertebrate is a mammal. Mammals include, but are not limited to, farm animals (such as cows), sport animals, pets (such as guinea pigs, cats, dogs, rabbits and horses), primates, mice and rats. In certain embodiments, a mammal is a human. In embodiments comprising administration of a compound of to a patient, the patient is typically in need thereof. [0081] The terms “inhibiting” and “reducing,” or any variation of these terms, includes any measurable decrease or complete inhibition to achieve a desired result. For example, there may be a decrease of about, at most about, or at least about 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 99%, or more, or any range derivable therein, reduction of activity compared to normal. [0082] The term “treatment” refers to clinical intervention designed to alter the natural course of the patient or cell being treated during the course of clinical pathology. Desirable effects of treatment include decreasing the rate of disease progression, ameliorating or palliating the disease state, and remission or improved prognosis. For example, a patient is successfully “treated” if one or more symptoms associated with a cancer described herein are mitigated or eliminated, including, but are not limited to, reducing the proliferation of (or destroying) cancerous cells, decreasing symptoms resulting from the disease, increasing the quality of life of those suffering from the disease, decreasing the dose of other medications required to treat the disease, and/or prolonging survival of patients. [0083] The term “delaying progression” of a disease refers to deferring, hindering, slowing, retarding, stabilizing, and/or postponing development of a cancer described herein. This delay can be of varying lengths of time, depending on the history of the cancer and/or patient being treated. As is evident to one skilled in the art, a sufficient or significant delay can, in effect, encompass prevention, in that the patient does not develop cancer or relapse. [0084] A “mutant KRas mediated disease” and the like refer to a disease described herein (e.g., a cancer described herein) having symptoms or requiring treatment as set forth herein that is/are wholly or partly associated with, a result of, a function of, or otherwise correlated to mutant KRas activity as described herein. In one such embodiment, the mutant KRas is KRasG12D. [0085] An “effective amount” or “therapeutically effective amount” is at least the minimum amount required to effect a measurable improvement or prevention of a cancer described herein. An effective amount herein may vary according to factors such as the disease state, age, sex, and weight of the patient, and the ability of the agent to elicit a desired response in the patient. An effective amount is also one in which any toxic or detrimental effects of the treatment are outweighed by the therapeutically beneficial effects. Beneficial or desired results include results such as eliminating or reducing the risk, lessening the severity, delaying the onset of the disease (including biochemical, histological and/or behavioral symptoms of the disease, its complications and intermediate pathological phenotypes presenting during development of the disease), decreasing one or more symptoms resulting from the disease, increasing the quality of life of those suffering from the disease, decreasing the dose of other medications required to treat the disease, enhancing effect of another medication such as via targeting, delaying the progression of the disease, and/or prolonging survival. In some embodiments, an effective amount of the drug may have the effect in reducing the number of cancer cells; reducing the tumor size; inhibiting (i.e., slow or stop) cancer cell infiltration into peripheral organs; inhibit (i.e., slow or stop) tumor metastasis; inhibiting (i.e., slow or stop) tumor growth; and/or relieving one or more of the symptoms associated with the disorder. An effective amount can be administered in one or more administrations. [0086] The term "co-administration," "administered in combination with," and their grammatical equivalents, as used herein, encompass administration of two or more agents to an animal, including humans, so that both agents and/or their metabolites are present in the subject at the same time. Co- administration includes simultaneous administration in separate compositions, administration at different times (i.e., sequential administration) in separate compositions, or administration in a composition in which both agents are present. [0087] The term “package insert” is used to refer to instructions customarily included in commercial packages of therapeutic products, that contain information about the indications, usage, dosage, administration, contraindications and/or warnings concerning the use of such therapeutic products. [0088] The terms "antagonist" and "inhibitor" are used interchangeably, and they refer to a compound having the ability to inhibit a biological function of a target protein, whether by inhibiting the activity or expression of the protein, such as a mutant form of KRas. Accordingly, the terms "antagonist" and "inhibitors" are defined in the context of the biological role of the target protein. While preferred antagonists herein specifically interact with (e.g., bind to) the target, compounds that inhibit a biological activity of the target protein by interacting with other members of the signal transduction pathway of which the target protein is a member are also specifically included within this definition. A preferred biological activity inhibited by an antagonist is associated with the development, growth, or spread of a tumor. [0089] The term "agonist" as used herein refers to a compound having the ability to initiate or enhance a biological function of a target protein, whether by inhibiting the activity or expression of the target protein. Accordingly, the term "agonist" is defined in the context of the biological role of the target polypeptide. While preferred agonists herein specifically interact with (e.g., bind to) the target, compounds that initiate or enhance a biological activity of the target polypeptide by interacting with other members of the signal transduction pathway of which the target polypeptide is a member are also specifically included within this definition. [0090] The terms “cancer” and “cancerous”, “neoplasm”, and “tumor” and related terms are used interchangeably herein and refer to or describe the physiological condition in mammals that is typically characterized by unregulated cell growth. A “tumor” comprises one or more cancerous cells. Examples of cancer include carcinoma, blastoma, sarcoma, seminoma, glioblastoma, melanoma, leukemia, and myeloid or lymphoid malignancies. More particular examples of such cancers include squamous cell cancer (e.g., epithelial squamous cell cancer) and lung cancer including small-cell lung cancer, non-small cell lung cancer (“NSCLC”), adenocarcinoma of the lung and squamous carcinoma of the lung. Other cancers include skin, keratoacanthoma, follicular carcinoma, hairy cell leukemia, buccal cavity, pharynx (oral), lip, tongue, mouth, salivary gland, esophageal, larynx, hepatocellular, gastric, stomach, gastrointestinal, small intestine, large intestine, pancreatic, cervical, ovarian, liver, bladder, hepatoma, breast, colon, rectal, colorectal, genitourinary, biliary passage, thyroid, papillary, hepatic, endometrial, uterine, salivary gland, kidney or renal, prostate, testis, vulval, peritoneum, anal, penile, bone, multiple myeloma, B-cell lymphoma, diffuse large B-Cell lymphoma (DLBCL), central nervous system, brain, head and neck, Hodgkin’s, and associated metastases. Other examples of neoplastic disorders include myeloproliferative disorders, such as polycythemia vera, essential thrombocytosis, myelofibrosis, such as primary myelofibrosis, and chronic myelogenous leukemia (CML). [0091] A "chemotherapeutic agent" is an agent useful in the treatment of a given disorder, for example, cancer or inflammatory disorders. Examples of chemotherapeutic agents are well-known in the art. Additionally, chemotherapeutic agents include pharmaceutically acceptable salts, acids or derivatives of any of chemotherapeutic agents, as well as combinations of two or more of them. [0092] Unless otherwise stated, structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms. Exemplary isotopes that can be incorporated into compounds and pharmaceutically acceptable salts thereof described herein, include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorus, sulfur, fluorine, chlorine, and iodine, such as 2H, 3H, 11C, 13C, 14C, 13N, 15N, 15O, 17O, 18O, 32P, 33P, 35S, 18F, 36Cl, 123I, and 125I, respectively. Isotopically-labeled compounds (e.g., those labeled with 3H and 14C) can be useful in compound or substrate tissue distribution assays. Tritiated (i.e., 3H) and carbon-14 (i.e., 14C) isotopes can be useful for their ease of preparation and detectability. Further, substitution with heavier isotopes such as deuterium (i.e., 2H) may afford certain therapeutic advantages resulting from greater metabolic stability (e.g., increased in vivo half-life or reduced dosage requirements). In some embodiments, in compounds and pharmaceutically acceptable salts thereof described herein, one or more carbon atoms are replaced by 13C- or 14C-enriched carbon. Positron emitting isotopes such as 15O, 13N, 11C, and 18F are useful for positron emission tomography (PET) studies to examine substrate receptor occupancy. Isotopically labeled compounds can generally be prepared by following procedures analogous to those disclosed in the Schemes or in the Examples herein, by substituting an isotopically labeled reagent for a non-isotopically labeled reagent. [0093] It is specifically contemplated that any limitation discussed with respect to one embodiment provided herein may apply to any other embodiment provided herein. Furthermore, any compound and pharmaceutically acceptable salts thereof described herein or composition described herein may be used in any method provided herein, and any method provided herein may be used to produce or to utilize any compound and pharmaceutically acceptable salts thereof described herein or composition described herein. [0094] Throughout this application, the term “about” is used to indicate that a value includes the standard deviation of error for the device or method being employed to determine the value. [0095] Compounds described herein may have stereochemistry depicted as follows:
Figure imgf000018_0001
It is understood that all three stereochemical depictions above are equivalent as set forth herein. Compounds [0096] In one aspect, provided herein is a compound having the structure of formula (I):
Figure imgf000018_0002
or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2;
Figure imgf000018_0003
, wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, -CN, -NH2, -N(Me)2, C1- 3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is -NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1-3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z1 is L1NR5R6, wherein: L1 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L2NR8R9, C1-6alkyl, L2Cy, or -S(=O)2R8, wherein: L2 is selected from: -S(=O)2(CH2)q-, -C(=O)(CH2)q-, -(CH2)q-, -P(=O)3(CH2)q-, –(CH2)–CH=CH–, and –CH=CH–(CH2)–, wherein q = 1 – 3; R8 and R9 are each independently hydrogen, C1-6alkyl, or C1-3haloalkyl; and Cy is a 3 – 10 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, two or three chained rings, and a spirocyclic ring; R6 is H or C1-6alkyl; or R5 and R6 together with the nitrogen atom to which they are both bonded form a group Q; wherein Q is: a 3 – 10 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, two or three chained rings, and a spirocyclic ring; optionally substituted with one or more R10 groups independently selected from: sulfonyl, cyano, halo, -NH2, -NHR11, -N(R11)2, -R11-NH2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C1- 6alkoxy, C1-6alkyl, C1-6cycloalkyl, C1-6alkoxy-C1-6alkyl, C1-6haloalkoxy-C1-6alkyl, cyano-C1- 6alkyl, C2-6alkenyl, hydroxy-C1-6alkyl, oxo, C1-6alkylcarbenyl, carboxy-C1-6alkyl, and C1-6 haloalkyl; wherein each R11 is independently selected from C1-6alkyl, C1-6haloalkyl, and hydroxyl-C1-6alkyl; wherein Q optionally comprises one or more heteroatoms selected from O, S(O)2, and N in addition to the nitrogen atom to which R5 and R6 are both bonded, wherein each additional instance of N is present in Q as N–H, N(R11), or as a tertiary N; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. [0097] In some embodiments, provided herein is a compound having the structure of formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, -CN, -NH2, -N(Me)2, C1- 3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is -NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1-3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z1 is L1NR5R6, wherein: L1 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L2NR8R9, C1-6alkyl, L2Cy, or -S(=O)2R8, wherein: L2 is selected from: -S(=O)2(CH2)q-, -C(=O)(CH2)q-, -(CH2)q-, -P(=O)3(CH2)q-, –(CH2)–CH=CH–, and –CH=CH–(CH2)–, wherein q = 1 – 3; R8 and R9 are each independently hydrogen, C1-6alkyl, or C1-3haloalkyl; and Cy is a 3 – 10 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, two or three chained rings, and a spirocyclic ring; R6 is H or C1-6alkyl; or R5 and R6 together with the nitrogen atom to which they are both bonded form a group Q; wherein Q is: a 3 – 10 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, two or three chained rings, and a spirocyclic ring; optionally substituted with one or more R10 groups independently selected from: sulfonyl, cyano, halo, -NH2, -NHR11, -N(R11)2, -R11-NH2, -R11-NH-R11, -R11-amino-(R11)2, hydroxyl, C1- 6alkoxy, C1-6alkyl, C1-6cycloalkyl, C1-6alkoxy-C1-6alkyl, C2-6alkenyl, hydroxy-C1-6alkyl, oxo, C1- 6alkylcarbenyl, carboxy-C1-6alkyl, and C1-6haloalkyl; wherein each R11 is independently selected from C1-6alkyl, C1-6haloalkyl, and hydroxyl-C1-6alkyl; and wherein Q optionally comprises one or more heteroatoms selected from O and N in addition to the nitrogen atom to which R5 and R6 are both bonded, wherein each additional instance of N is present in Q as N–H, N(R11), or as a tertiary N; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. [0098] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NR12-. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is NH. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is O. [0099] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein m is 0, n is 1, and p is 1. [0100] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein no more than one of R01, R02, R03, R04, and R05 is hydrogen. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein no more than two of R01, R02, R03, R04, and R05 is hydrogen. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R01, R02, R03, R04, and R05 is halogen. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R01, R02, R03, R04, and R05 is C1-3haloalkyl. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R01, R02, R03, R04, and R05 is amino. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R01, R02, R03, R04, and R05 is C1-3alkyl. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, -NH2, C1-3alkyl, C1- 3haloalkyl. [0101] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R1 is:
Figure imgf000021_0001
[0102] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R1 is:
Figure imgf000022_0001
[0103] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R1 is:
Figure imgf000022_0002
. [0104] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R2 is fluoro. [0105] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R3’ and R3” are both H. [0106] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R4’ is hydrogen and R4” is methyl. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R4’ is hydrogen and R4” is -CF3. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R4’ and R4” are both hydrogen. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R4’ and R4” are both methyl. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R4’ is hydrogen and R4” is -CH2OH. [0107] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is hydrogen, methyl, or C1-3haloalkyl. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is hydrogen. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is - NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is methyl. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is - NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is C1-3haloalkyl. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is -CHF2. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is - NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is -CF3. [0108] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein, when present, at least one of R10 is selected from -NH2, -NHR11, -N(R11)2, -R11-NH2, -R11-NH-R11, -R11-N(R11)2. [0109] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form Q; and Q is a 3-10 membered monocyclic ring optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R11)2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, C1- 6haloalkoxy-C1-6alkyl, cyano-C1-6alkyl, hydroxy-C1-6alkyl, oxo, carboxy-C1-6alkyl, and C1-6haloalkyl. [0110] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form Q; and Q is a 3-10 membered monocyclic ring optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R11)2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, hydroxy-C1-6alkyl, oxo, carboxy-C1-6alkyl, and C1-6haloalkyl. [0111] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring, a pyrrolidine ring, a piperazine ring, or a morpholine ring, optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R11)2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, C1-6haloalkoxy-C1-6alkyl, cyano-C1-6alkyl, hydroxy-C1- 6alkyl, oxo, carboxy-C1-6alkyl, and C1-6haloalkyl. [0112] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring, a pyrrolidine ring, a piperazine ring, or a morpholine ring, optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R11)2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, hydroxy-C1-6alkyl, oxo, carboxy-C1-6alkyl, and C1- 6haloalkyl. [0113] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R11)2, -R11-NH-R11, - R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, C1-6haloalkoxy-C1-6alkyl, cyano- C1-6alkyl, hydroxy-C1-6alkyl, oxo, carboxy-C1-6alkyl, and halo-C1-6alkyl. [0114] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R 11 ) 2 , -R 11 -NH-R 11 , - R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, hydroxy-C1-6alkyl, oxo, carboxy- C1-6alkyl, and halo-C1-6alkyl. [0115] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring. [0116] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a pyrrolidine ring optionally substituted with one or more groups selected from -N(R11)2, hydroxyl, C1-6alkyl, hydroxy-C1-6alkyl, oxo, and carboxy-C1-6alkyl. [0117] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a pyrrolidine ring. [0118] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a piperazine ring optionally substituted with one or more oxo groups. [0119] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a morpholine ring optionally substituted with one or more groups selected from hydroxy-C1-6alkyl and oxo. [0120] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form 3-10 membered two chained rings optionally substituted with one or more R10 groups independently selected from halo, C1-6alkoxy, C1-6alkyl, and hydroxy-C1-6alkyl. In some embodiments, both rings of the two chained rings are saturated. In some embodiments, both rings of the two chained rings are heterocycles. In some embodiments, both rings of the two chained rings are saturated heterocycles, each independently comprising 1-3 ring heteroatoms independently selected from the group consisting of N, O, and S. In other embodiments, one ring of the two chained rings is saturated and the other is a heteroaryl. In some embodiments, one ring of the two chained rings is azetidine, and the second ring is a saturated heterocycle or heteroaryl, each comprising 1-3 ring heteroatoms independently selected from the group consisting of O and N. In some emboidments, the first ring is azetidine, and the second ring is azetidine, morpholine, triazole, or thietane dioxide. In some embodiments, the first ring is azetidine, and the second ring is azetidine or morpholine. In any such embodiments, the rings may be independently unsubstituted or substituted with one or more R10 groups independently selected from halo, C1- 6alkoxy, C1-6alkyl, and hydroxy-C1-6alkyl; such as unsubstituted or substituted with 1-3 R10 groups. [0121] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a 3-10 membered spirocyclic ring optionally substituted with one or more R10 groups independently selected from hydroxyl, C1-6alkyl, and oxo. In some embodiments, the spirocyclic ring is saturated. In some embodiments, the spirocylic ring comprises 1-3 annular heteroatoms independently selected from the group consisting of O, N, and S. In certain embodiments, the spirocyclic ring is a 3- 10 membered, saturated spirocyclic ring comprising 1-3 annular N atoms. [0122] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a 3-10 membered fused bicyclic ring optionally substituted with one or more hydroxyl groups. [0123] In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R10 is dimethylamino. In some embodiments, provided herein is a compound of Formula (I), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R10 is methyl. [0124] In one aspect, provided herein is a compound having the structure of formula (II),
Figure imgf000026_0001
or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; , wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, CN, NH2, N(Me)2, C1- 3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1-3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z2 is L0OR5, wherein: L0 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L1J1, or L2Q, wherein: L1 is selected from: –(CH2)q–, –(CH2)C(Ra)(Rb)–, –(CH2)C(H)(Ra)C(H)(Rb)–, –C(H)(Ra)C(H)(Rb)–, –(CH2)Cy– and a bond, wherein q = 1 – 3, Ra and Rb together with the carbon atoms to which each is attached form a ring, and Cy is an optionally substituted 1,2-linked cyclopropyl ring; J1 is selected from: cyano, –C(=O)NR8R9, –C(=O)OR8, -OR8, and -R8; wherein R8 and R9 are independently selected from H, C1-6alkyl, C2- 6alkenyl, and phenyl, with the proviso that R8 and R9 are not both H; and wherein Cy, Ra, Rb, R8 and R9 are each optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, alkylcarboxy, C1-6alkoxy, and oxo; and L2 is selected from: –(CHR13)q–, -(CH2)q-C(=O)- and a bond; Qis a 3 – 11 membered ring selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, and a spirocyclic ring; wherein Q is optionally substituted with one or more groups independently selected from: halogen, sulfonyl, cyano, oxo, -NR13C(=O)R14, -C(=O)R14, hydroxyl, -OR14, and -R14; R13 and R14 are independently selected from: hydrogen, C1-6alkyl, and C2- 6alkenyl; and wherein R13 and R14 are each optionally and independently substituted by one or more groups selected from: sulfonyl, -S(=O)2(R11), cyano, halogen, oxo, hydroxyl, C1-6alkoxy, and C1-6alkylcarboxy; R11 is selected from C1-6alkyl, C1-6haloalkyl, and hydroxyl-C1-6alkyl; and wherein Q optionally comprises one or more heteroatoms selected from O, S, S(O)2 and N, wherein each instance of N is present in Q as an amide, amide lactam, or wherein Q is a heteroaromatic ring moiety; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. [0125] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2;
Figure imgf000028_0001
wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, CN, NH2, N(Me)2, C1- 3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1-3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z2 is L0OR5, wherein: L0 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L1J1, or L2Q, wherein: L1 is selected from: –(CH2)q–, –(CH2)C(Ra)(Rb)–, –(CH2)C(H)(Ra)C(H)(Rb)–, –C(H)(Ra)C(H)(Rb)–, –(CH2)Cy– and a bond, wherein q = 1 – 3, Ra and Rb together with the carbon atoms to which each is attached form a ring, and Cy is an optionally substituted 1,2-linked cyclopropyl ring; J1 is selected from: cyano, –N(R8)C(=O)–, –C(=O)NR8R9, –C(=O)OR8, - OR8, and -R8; wherein R8 and R9 are independently selected from H, C1-6alkyl, C2-6alkenyl, and phenyl, with the proviso that R8 and R9 are not both H; and wherein Cy, Ra, Rb, R8 and R9 are each optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, alkylcarboxy, C1- 6alkoxy, and oxo; and L2 is selected from: –(CHR13)q–, -(CH2)q-C(=O)- and a bond; Qis a 3 – 11 membered ring selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, and a spirocyclic ring; wherein Q is optionally substituted with one or more groups independently selected from: halogen, sulfonyl, cyano, oxo, -NR13C(=O)R14, -C(=O)R14, hydroxyl, -OR14, and -R14; R13 and R14 are independently selected from: hydrogen, C1-6alkyl, and C2-6alkenyl; and wherein R13 and R14 are each optionally and independently substituted by one or more groups selected from: sulfonyl, - =S(=O)2(R11), cyano, halogen, oxo, hydroxyl, C1- 6alkoxy, and C1-6alkylcarboxy; and wherein Q optionally comprises one or more heteroatoms selected from O, S, S(O)2 and N, wherein each instance of N is present in Q as an amide, amide lactam, or wherein Q is a heteroaromatic ring moiety; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. [0126] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NR12-. In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is NH. In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is O. [0127] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m = 0; n = 1; and p = 1. [0128] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein no more than one of R01, R02, R03, R04, and R05 is hydrogen. In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein no more than two of R01, R02, R03, R04, and R05 is hydrogen. In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R 01 , R 02 , R 03 , R 04 , and R 05 is halogen. In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R01, R02, R03, R04, and R05 is C1-3-haloalkyl. In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R01, R02, R03, R04, and R05 is amino. [0129] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R1 is: ,
Figure imgf000030_0001
[0130] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R1 is: [0131] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R1 is
Figure imgf000031_0001
. [0132] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R2 is fluoro. [0133] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R3' and R3'' are both H. [0134] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein each R4' is hydrogen and R4'' is methyl. [0135] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein each R4' is hydrogen and R4'' is -CF3. [0136] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is - NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is hydrogen, methyl, or C1-3haloalkyl. In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is hydrogen. In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NH-; m = 0; n = 1; p = 1; R 2 is halogen; R 3 ' and R 3 '' are independently hydrogen; R 4 ' is hydrogen; and R 4 '' is methyl. In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is C1-3haloalkyl. In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is - NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is -CHF2. In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is -CF3. [0137] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein L1 is a bond. [0138] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein J is R8. [0139] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R8 is C1-6alkyl optionally substituted with one or more groups selected from halogen, hydroxy, cyano, and oxo. [0140] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein L2 is a bond or –(CHR13)q–. In some embodiments, L2 is a bond. In some embodiments, L2 is – (CHR13)q–. In some embodiments, Z2 is –O-Q, –O-CH2-Q, –O-CH2CH2-Q, or –O-CH2CH2CH2- Q. In some embodiments, Z2 is –O-CH2-Q. In some embodiments, Z2 is –O-CH2CH2-Q. In some embodiments, Z2 is –O-Q. In some embodiments, Z2 is –O-CH2-Cy, or –O-CH2CH2-Cy. In some embodiments, Z2 is –O-CH2-Cy. In some embodiments, Z2 is –O-CH2CH2-Cy. [0141] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein Q is selected from: cyclopropane, cyclobutane, cyclohexane, benzene, pyrrolidine, piperidine, morpholine, pyridine, pyridone, pyridazine, pyrazine, pyrimidine, 1,4-dioxane, 1H-pyrazole, isoindoline-1,3-dione, 2-oxabicyclo[2.1.1]hexane, tetrahydrofuran, oxetane, tetrahydropyran, thietane, 2,3-dihydrobenzofuran, iso-oxazole, bicyclo[1.1.1]pentane, 6,7-dihydro-5H- pyrrolo[1,2-a]imidazole, imidazole, tetrahydro-2H-thiopyran, 1,2,4-triazole, 9-oxa-2- azaspiro[5.5]undecane, azetidine, 3-oxabicyclo[3.1.0]hexane, tetrahydrothiophene, and oxazolidine, wherein said Q is optionally substituted with one or more groups selected from halogen, sulfonyl, cyano, oxo, -NR13C(=O)R14, -C(=O)R14, hydroxyl, and -R14. In some embodiments, R14 is C1-6alkyl optionally substituted by one or more groups selected from hydroxyl, halogen, and oxo. In some embodiments, R13 is hydrogen and R14 is C1-6alkyl. [0142] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein Q is selected from: cyclopropane, cyclobutane, cyclohexane, benzene, pyrollidine, piperidine, morpholine, pyridine, pyridone, pyridazine, pyrazine, pyrimidine, 1,4-dioxane, 1H-pyrazole, isoindoline-1,3-dione, 2-oxabicyclo[2.1.1]hexane, tetrahydrofuran, oxetane, tetrahydropyran, thietane, 2,3-dihydrobenzofuran, iso-oxazole, bicyclo[1.1.1]pentane, 6,7-dihydro-5H- pyrrolo[1,2-a]imidazole, imidazole, tetrahydro-2H-thiopyran, 1,2,4-triazole, 9-oxa-2- azaspiro[5.5]undecane, azetidine, 3-oxabicyclo[3.1.0]hexane, tetrahydrothiophene, and oxazolidine. [0143] In some embodiments, provided herein is a compound of Formula (II), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein Q is selected from: cyclopropane, cyclobutane, cyclohexane, benzene, pyrollidine, piperidine, morpholine, pyridine, pyridazine, pyrazine, pyrimidine, 1,4-dioxane, 1H-pyrazole, isoindoline-1,3-dione, 2- oxabicyclo[2.1.1]hexane, tetrahydrofuran, oxetane, tetrahydropyran, thietane, 2,3- dihydrobenzofuran, iso-oxazole, bicyclo[1.1.1]pentane, 6,7-dihydro-5H-pyrrolo[1,2-a]imidazole, imidazole, tetrahydro-2H-thiopyran, 1,2,4-triazole, and 9-oxa-2-azaspiro[5.5]undecane. [0144] In one aspect, provided herein is a compound having the structure of formula (III),
Figure imgf000033_0001
or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, CN, NH2, N(Me)2, C1- 3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1-3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z3 is L1OR5, wherein: L1 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L2J, or L2QJ, wherein: L2 is selected from: –(CH2)q–, –(CH2)q–C(=O)–, and a bond, wherein q = 1 – 3; J is C1-6alkyl-NR8R9 or -NR8R9; wherein R8 and R9 are independently selected from H, C1-6alkyl, and C2- 6alkenyl; wherein J is optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, and C1-6alkoxy; and, when not H, each of R8 and R9 is optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, C1-6alkylcarboxy, C1-6alkoxy, C1-6cycloalkyl, 5-6 membered heterocyclyl, and oxo; Q is a 3 – 8 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, and a spirocyclic ring; wherein Q is optionally substituted with one or more groups independently selected from: halogen, cyano, oxo, hydroxyl, C1-6alkoxy, and C1-6haloalkyl; wherein Q optionally comprises one or more heteroatoms selected from O, S, and N; wherein L2 and J both bond to the same ring atom of Q; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. [0145] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NR12-. In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is NH. In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is O. [0146] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NH-. [0147] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m = 0; n = 1; and p = 1. [0148] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein no more than one of R01, R02, R03, R04, and R05 is hydrogen. In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein no more than two of R01, R02, R03, R04, and R05 is hydrogen. In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R01, R02, R03, R04, and R05 is halogen. In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R01, R02, R03, R04, and R05 is C1-3-haloalkyl. In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein one of R01, R02, R03, R04, and R05 is amino. [0149] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R1 is:
Figure imgf000035_0001
[0150] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R1 is: ,
Figure imgf000036_0001
[0151] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein
Figure imgf000036_0002
[0152] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R 2 is fluoro. [0153] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein R3' and R3'' are both H. [0154] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein each R4' is hydrogen and R4'' is methyl. [0155] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein each R4' is hydrogen and R4'' is -CF3. [0156] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is hydrogen, methyl, or C1-3haloalkyl. In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is - NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is hydrogen. In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is methyl. In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is C1- 3haloalkyl. In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is - NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is -CHF2. In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein X is - NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is -CF3. [0157] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein L2 is –(CH2)q–. [0158] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein J is C1-6alkyl-NR8R9 optionally substituted with one or more groups independently selected from halogen and hydroxy. In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein J is C1-6alkyl-NR8R9. [0159] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein J is NR8R9. [0160] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein Q is cyclopropyl optionally substituted with one or more halogen. In some embodiments, Q is cyclopropyl. [0161] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein each of R8 and R9 is independently hydrogen or C1-6alkyl optionally substituted with oxo, halogen, C1-6alkoxy, and 5-6 membered heterocyclyl. In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein each of R8 and R9 is independently hydrogen or C1-6alkyl. [0162] In some embodiments, provided herein is a compound of Formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein q = 1. [0163] In some embodiments the compound is a compound as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. Table 1:
Figure imgf000038_0001
Figure imgf000039_0001
Figure imgf000040_0001
Figure imgf000041_0001
Figure imgf000042_0001
Figure imgf000043_0001
Figure imgf000044_0001
Figure imgf000045_0001
Figure imgf000046_0001
Figure imgf000047_0001
Figure imgf000048_0001
Figure imgf000049_0001
Figure imgf000050_0001
Figure imgf000051_0001
Figure imgf000052_0001
Figure imgf000053_0001
Figure imgf000054_0001
Figure imgf000055_0001
Figure imgf000056_0001
Figure imgf000057_0001
Figure imgf000058_0001
Figure imgf000059_0001
Figure imgf000060_0001
Figure imgf000061_0001
Figure imgf000062_0001
Figure imgf000063_0001
Figure imgf000064_0001
Figure imgf000065_0001
Figure imgf000066_0001
Figure imgf000067_0001
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[0164] In some embodiments, the compound is selected from the group consisting of compounds 1-262 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. In some embodiments, the compound is selected from the group consisting of compounds 1-182 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. In some embodiments, the compound is selected from the group consisting of compounds 183-262 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0165] In some embodiments, the compound is selected from the group consisting of compounds 1-7, 46-55, 75-79, 82-97, 194-214, 223-227, 229-230, 233-238, 243, 245, 248-249, 251-253, and 255-262 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. In some embodiments, the compound is selected from the group consisting of compounds 1-7, 46-55, 75-79, and 82-97 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. In some embodiments, the compound is selected from the group consisting of compounds 194-214, 223-227, 229-230, 233-238, 243, 245, 248-249, 251-253, and 255-262 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0166] In some embodiments, the compound is selected from the group consisting of compounds 8-31, 33-39, 66-67, 73-74, 98-177, 179-182, 183-192, 215-222, 228, 231-232, 239-242, 244, 246- 247, 250, and 254 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. In some embodiments, the compound is selected from the group consisting of compounds 8-31, 33-39, 66-67, 73-74, and 98-177, 179-182 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. In some embodiments, the compound is selected from the group consisting of compounds 183-192, 215-222, 228, 231-232, 239-242, 244, 246-247, 250, and 254 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0167] In some embodiments, the compound is selected from the group consisting of compounds 56-65, 68-72, 80-81, and 178 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0168] In some embodiments, the compound is selected from the group consisting of compounds 1-7, 83-89, and 97 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0169] In some embodiments, the compound is selected from the group consisting of compounds 40 and 41 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0170] In some embodiments, the compound is selected from the group consisting of compounds 42-45 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0171] In some embodiments, the compound is selected from the group consisting of compounds 46-48, 79, 90, and 93-94 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0172] In some embodiments, the compound is selected from the group consisting of compounds 49-55, 75-78, 82, 91-92, and 95-96 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0173] In some embodiments, the compound is selected from the group consisting of compounds 1, 26, 39, 56, 64, 65, 70, 71, 75, 76, and 97 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. Synthesis of Compounds [0174] Compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein of the present disclosure can be made by a variety of methods depicted in the illustrative synthetic reaction schemes shown and described below. The starting materials and reagents used in preparing these compounds generally are either available from commercial suppliers, such as Aldrich Chemical Co., or are prepared by methods known to those skilled in the art following procedures set forth in references such as Fieser and Fieser’s Reagents for Organic Synthesis; Wiley & Sons: New York, vol.1-21; R. C. LaRock, Comprehensive Organic Transformations, 2nd edition Wiley-VCH, New York 1999; Comprehensive Organic Synthesis, B. Trost and I. Fleming (Eds.) vol.1-9 Pergamon, Oxford, 1991; Comprehensive Heterocyclic Chemistry, A. R. Katritzky and C. W. Rees (Eds.) Pergamon, Oxford 1984, vol.1-9; Comprehensive Heterocyclic Chemistry II, A. R. Katritzky and C. W. Rees (Eds) Pergamon, Oxford 1996, vol.1-11; and Organic Reactions, Wiley & Sons: New York, 1991, vol.1-40. The following synthetic reaction schemes are merely illustrative of some methods by which the compounds or pharmaceutical acceptable salts thereof described herein can be synthesized, and various modifications to these synthetic reaction schemes can be made and will be suggested to one skilled in the art having referred to the disclosure contained herein. [0175] Synthetic chemistry transformations and protecting group methodologies (protection and deprotection) useful in synthesizing compounds described herein and necessary reagents and intermediates include, for example, those described in R. Larock, Comprehensive Organic Transformations, VCH Publishers (1989); T. W. Greene and P. G. M. Wuts, Protective Groups in Organic Synthesis, 3rd Ed., John Wiley and Sons (1999); and L. Paquette, ed., Encyclopedia of Reagents for Organic Synthesis, John Wiley and Sons (1995) and subsequent editions thereof. [0176] Compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein described herein can be prepared singly or as compound libraries comprising at least 2, for example 5 to 1,000 compounds, or 10 to 100 compounds. Libraries of compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein of the formulae described herein can be prepared by a combinatorial split and mix approach or by multiple parallel syntheses using, for example, either solution phase or solid phase chemistry. Thus, according to a further aspect provided herein is a compound library comprising at least 2 compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein. [0177] The Examples provide exemplary methods for preparing compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein. Those skilled in the art will appreciate that other synthetic routes can be used to synthesize the compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein described herein. Although specific starting materials and reagents are depicted and discussed in the Examples, other starting materials and reagents can be substituted to provide a variety of derivatives and/or reaction conditions. In addition, many of the exemplary compounds prepared by the described methods can be further modified in light of this disclosure using conventional chemistry. [0178] In preparing compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein protection of remote functionality (e.g., primary or secondary amine) of intermediates can be necessary. The need for such protection will vary depending on the nature of the remote functionality and the conditions of the preparation methods. Suitable amino-protecting groups include acetyl, trifluoroacetyl, t-butoxycarbonyl (BOC), benzyloxycarbonyl (CBz) and 9-fluorenylmethyleneoxycarbonyl (Fmoc). The need for such protection can be readily determined. For a general description of protecting groups and their use, see T. W. Greene, Protective Groups in Organic Synthesis, John Wiley & Sons, New York, 1991. [0179] In the methods of preparing compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein, it can be advantageous to separate reaction products from one another and/or from starting materials. The desired products of each step or series of steps are separated and/or purified to the desired degree of homogeneity by the techniques common in the art. Typically, such separations involve multiphase extraction, crystallization from a solvent or solvent mixture, distillation, sublimation, or chromatography. Chromatography can involve any number of methods including, for example: reverse-phase and normal phase; size exclusion; ion exchange; high, medium and low pressure liquid chromatography methods and apparatus; small scale analytical; simulated moving bed (SMB) and preparative thin or thick layer chromatography, as well as techniques of small scale thin layer and flash chromatography. [0180] Another class of separation methods involves treatment of a mixture with a reagent selected to bind to or render otherwise separable a desired product, unreacted starting material, reaction by product, or the like. Such reagents include adsorbents or absorbents such as activated carbon, molecular sieves, ion exchange media, or the like. Alternatively, the reagents can be acids in the case of a basic material, bases in the case of an acidic material, binding reagents such as antibodies, binding proteins, selective chelators such as crown ethers, liquid/liquid ion extraction reagents (LIX), or the like. Selection of appropriate methods of separation depends on the nature of the materials involved, such as, boiling point and molecular weight in distillation and sublimation, presence or absence of polar functional groups in chromatography, stability of materials in acidic and basic media in multiphase extraction, and the like. [0181] Diastereomeric mixtures can be separated into their individual diastereomers on the basis of their physical chemical differences by methods such as by chromatography and/or fractional crystallization. Enantiomers can be separated by converting the enantiomeric mixture into a diastereomeric mixture by reaction with an appropriate optically active compound (e.g., chiral auxiliary such as a chiral alcohol or Mosher’s acid chloride), separating the diastereomers and converting (e.g., hydrolyzing) the individual diastereoisomers to the corresponding pure enantiomers. Also, some of the compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein described herein can be atropisomers (e.g., substituted biaryls). Enantiomers can also be separated by use of a chiral HPLC column. [0182] A single stereoisomer, e.g., an enantiomer, substantially free of its stereoisomer can be obtained by resolution of the racemic mixture using a method such as formation of diastereomers using optically active resolving agents (Eliel, E. and Wilen, S. “Stereochemistry of Organic Compounds,” John Wiley & Sons, Inc., New York, 1994; Lochmuller, C. H., (1975) J. Chromatogr., 113(3):283-302). Racemic mixtures of chiral compounds or pharmaceutically acceptable salts thereof described herein can be separated and isolated by any suitable method, including: (1) formation of ionic, diastereomeric salts with chiral compounds and separation by fractional crystallization or other methods, (2) formation of diastereomeric compounds with chiral derivatizing reagents, separation of the diastereomers, and conversion to the pure stereoisomers, and (3) separation of the substantially pure or enriched stereoisomers directly under chiral conditions. See: “Drug Stereochemistry, Analytical Methods and Pharmacology,” Irving W. Wainer, Ed., Marcel Dekker, Inc., New York (1993). [0183] Under method (1), diastereomeric salts can be formed by reaction of enantiomerically pure chiral bases such as brucine, quinine, ephedrine, strychnine, a-methyl-b-phenylethylamine (amphetamine), and the like with asymmetric compounds bearing acidic functionality, such as carboxylic acid and sulfonic acid. The diastereomeric salts can be induced to separate by fractional crystallization or ionic chromatography. For separation of the optical isomers of amino compounds, addition of chiral carboxylic or sulfonic acids, such as camphorsulfonic acid, tartaric acid, mandelic acid, or lactic acid can result in formation of the diastereomeric salts. [0184] Alternatively, by method (2), the substrate to be resolved is reacted with one enantiomer of a chiral compound to form a diastereomeric pair (E. and Wilen, S. “Stereochemistry of Organic Compounds”, John Wiley & Sons, Inc., 1994, p.322). Diastereomeric compounds can be formed by reacting asymmetric compounds with enantiomerically pure chiral derivatizing reagents, such as menthyl derivatives, followed by separation of the diastereomers and hydrolysis to yield the pure or enriched enantiomer. A method of determining optical purity involves making chiral esters, such as a menthyl ester, e.g., (-) menthyl chloroformate in the presence of base, or Mosher ester, a-methoxy- a-(trifluoromethyl)phenyl acetate (Jacob III. J. Org. Chem. (1982) 47:4165), of the racemic mixture, and analyzing the 1H NMR spectrum for the presence of the two atropisomeric enantiomers or diastereomers. Stable diastereomers of atropisomeric compounds can be separated and isolated by normal- and reverse-phase chromatography following methods for separation of atropisomeric naphthyl-isoquinolines (WO 96/15111). By method (3), a racemic mixture of two enantiomers can be separated by chromatography using a chiral stationary phase (“Chiral Liquid Chromatography” (1989) W. J. Lough, Ed., Chapman and Hall, New York; Okamoto, J. Chromatogr., (1990) 513:375- 378). Enriched or purified enantiomers can be distinguished by methods used to distinguish other chiral molecules with asymmetric carbon atoms, such as optical rotation and circular dichroism. [0185] The chemical reactions described herein may be readily adapted to prepare other compounds and pharmaceutically acceptable salts thereof described herein. For example, the synthesis of non-exemplified compounds and pharmaceutically acceptable salts thereof described herein may be successfully performed by modifications apparent to those skilled in the art, e.g., by appropriately protecting interfering groups, by utilizing other suitable reagents known in the art other than those described, or by making routine modifications of reaction conditions. Alternatively, other reactions disclosed herein or known in the art will be recognized as having applicability for preparing other compounds and pharmaceutically acceptable salts thereof described herein. Pharmaceutical Formulations [0186] Also provided herein are pharmaceutical compositions comprising compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein and one or more pharmaceutically acceptable excipients. [0187] Compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein as described herein can be formulated in accordance with standard pharmaceutical practice as a pharmaceutical composition. Thus, further provided herein is a pharmaceutical composition comprising a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein as described herein and one or more pharmaceutically acceptable excipients. [0188] A typical formulation is prepared by mixing a compound or pharmaceutically acceptable salt thereof as described herein and an excipient. Suitable carriers, diluents and excipients include, but are not limited to, materials such as carbohydrates, waxes, water soluble and/or swellable polymers, hydrophilic or hydrophobic materials, gelatin, oils, solvents, water and the like. The particular excipient used will depend upon the means and purpose for which the compound or pharmaceutically acceptable salt thereof as described herein is being applied. Solvents are generally selected based on solvents recognized as safe (GRAS) to be administered to a mammal. In general, safe solvents are non-toxic aqueous solvents such as water and other non-toxic solvents that are soluble or miscible in water. Suitable aqueous solvents include water, ethanol, propylene glycol, polyethylene glycols (e.g., PEG 400, PEG 300), etc. and mixtures thereof. The formulations can also include one or more buffers, stabilizing agents, surfactants, wetting agents, lubricating agents, emulsifiers, suspending agents, preservatives, antioxidants, opaquing agents, glidants, processing aids, colorants, sweeteners, perfuming agents, flavoring agents and other known additives to provide an elegant presentation of the drug (i.e., a compound described herein or pharmaceutical composition thereof) or aid in the manufacturing of the pharmaceutical product (i.e., medicament). [0189] The formulations can be prepared using conventional dissolution and mixing procedures. For example, the bulk drug substance (i.e., compound or pharmaceutically acceptable salt thereof as described herein or stabilized form thereof (e.g., complex with a cyclodextrin derivative or other known complexation agent) is dissolved in a suitable solvent in the presence of one or more of the excipients described above. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein as described herein is typically formulated into pharmaceutical dosage forms to provide an easily controllable dosage of the drug and to enable patient compliance with the prescribed regimen. [0190] The pharmaceutical composition (or formulation) for application can be packaged in a variety of ways depending upon the method used for administering the drug. Generally, an article for distribution includes a container having deposited therein the pharmaceutical formulation in an appropriate form. Suitable containers include materials such as bottles (plastic and glass), sachets, ampoules, plastic bags, metal cylinders, and the like. The container can also include a tamper-proof assemblage to prevent indiscreet access to the contents of the package. In addition, the container has deposited thereon a label that describes the contents of the container. The label can also include appropriate warnings. [0191] Pharmaceutical formulations of the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein can be prepared for various routes and types of administration. For example, a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof having the desired degree of purity can optionally be mixed with one or more pharmaceutically acceptable excipients (Remington’s Pharmaceutical Sciences (1980) 16th edition, Osol, A. Ed.), in the form of a lyophilized formulation, milled powder, or an aqueous solution. Formulation can be conducted by mixing at ambient temperature at the appropriate pH, and at the desired degree of purity, with physiologically acceptable carriers, i.e., carriers that are non-toxic to recipients at the dosages and concentrations employed. The pH of the formulation depends mainly on the particular use and the concentration of compound, but can range from about 3 to about 8. For example, formulation in an acetate buffer at pH 5 can be a suitable embodiment. [0192] The pharmaceutical composition ordinarily can be stored as a solid composition, a lyophilized formulation or as an aqueous solution. [0193] The pharmaceutical compositions described herein can be formulated, dosed and administered in a fashion, i.e., amounts, concentrations, schedules, course, vehicles and route of administration, consistent with good medical practice. Factors for consideration in this context include the particular disorder being treated, the particular mammal being treated, the clinical condition of the individual patient, the cause of the disorder, the site of delivery of the agent, the method of administration, the scheduling of administration, and other factors known to medical practitioners. The effective amount of the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof to be administered will be governed by such considerations, and is the minimum amount necessary to ameliorate, or treat the hyperproliferative disorder. [0194] As a general proposition, the initial pharmaceutically effective amount of the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof administered parenterally per dose will be in the range of about 0.01-100 mg/kg, namely about 0.1 to 20 mg/kg of patient body weight per day, with the typical initial range of compound used being 0.3 to 15 mg/kg/day. In another embodiment, a pharmaceutical composition described herein comprises an effective amount of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein in an amount of about: 1mg-10mg; 10mg-25mg; 20mg- 50mg; 50mg-75mg; 70mg-100mg;100mg-150mg; 100mg-200mg; 100mg-500mg; 200mg-500mg; 250mg-500mg; 500mg-1000mg; or 750mg-1000mg. [0195] Acceptable pharmaceutically acceptable excipients are nontoxic to recipients at the dosages and concentrations employed, and include buffers such as phosphate, citrate and other organic acids; antioxidants including ascorbic acid and methionine; preservatives (such as octadecyldimethylbenzyl ammonium chloride; hexamethonium chloride; benzalkonium chloride, benzethonium chloride; phenol, butyl or benzyl alcohol; alkyl parabens such as methyl or propyl paraben; catechol; resorcinol; cyclohexanol; 3-pentanol; and m-cresol); low molecular weight (less than about 10 residues) polypeptides; proteins, such as serum albumin, gelatin, or immunoglobulins; hydrophilic polymers such as polyvinylpyrrolidone; amino acids such as glycine, glutamine, asparagine, histidine, arginine, or lysine; monosaccharides, disaccharides and other carbohydrates including glucose, mannose, or dextrins; chelating agents such as EDTA; sugars such as sucrose, mannitol, trehalose or sorbitol; salt-forming counter-ions such as sodium; metal complexes (e.g., Zn-protein complexes); and/or non-ionic surfactants such as TWEEN®, PLURONICS® or polyethylene glycol (PEG). The active pharmaceutical ingredients can also be entrapped in microcapsules prepared, for example, by coacervation techniques or by interfacial polymerization, for example, hydroxymethylcellulose or gelatin-microcapsules and poly-(methylmethacrylate) microcapsules, respectively, in colloidal drug delivery systems (for example, liposomes, albumin microspheres, microemulsions, nano-particles and nanocapsules) or in macroemulsions. Such techniques are disclosed in Remington’s Pharmaceutical Sciences 16th edition, Osol, A. Ed. (1980). [0196] Sustained-release preparations of compounds or pharmaceutically acceptable salts thereof as described herein may be prepared. Suitable examples of sustained-release preparations include semipermeable matrices of solid hydrophobic polymers containing a compound or pharmaceutically acceptable salt thereof as described herein, which matrices are in the form of shaped articles, e.g., films, or microcapsules. Examples of sustained-release matrices include polyesters, hydrogels (for example, poly(2-hydroxyethyl-methacrylate), or poly(vinyl alcohol)), polylactides (US 3773919), copolymers of L-glutamic acid and gamma-ethyl-L-glutamate, non-degradable ethylene-vinyl acetate, degradable lactic acid-glycolic acid copolymers such as the LUPRON DEPOT™ (injectable microspheres composed of lactic acid-glycolic acid copolymer and leuprolide acetate) and poly-D-(- )-3-hydroxybutyric acid. [0197] The formulations include those suitable for the administration routes detailed herein. The formulations can conveniently be presented in unit dosage form and can be prepared by any methods. Techniques and formulations generally are found in Remington’s Pharmaceutical Sciences (Mack Publishing Co., Easton, PA). Such methods include the step of bringing into association the active ingredient with the carrier which constitutes one or more accessory ingredients. In general, the formulations are prepared by uniformly and intimately bringing into association the active ingredient with liquid carriers or finely divided solid carriers or both, and then, if necessary, shaping the product. [0198] Formulations of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein suitable for oral administration can be prepared as discrete units such as pills, capsules, sachets or tablets each containing a predetermined amount of such compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. Compressed tablets can be prepared by compressing in a suitable machine the active ingredient in a free-flowing form such as a powder or granules, optionally mixed with a binder, lubricant, inert diluent, preservative, surface active or dispersing agent. Molded tablets can be made by molding in a suitable machine a mixture of the powdered active ingredient moistened with an inert liquid diluent. The tablets can optionally be coated or scored and optionally are formulated so as to provide slow or controlled release of the active ingredient therefrom. Tablets, troches, lozenges, aqueous or oil suspensions, dispersible powders or granules, emulsions, hard or soft capsules, e.g., gelatin capsules, syrups or elixirs can be prepared for oral use. Formulations of compounds or pharmaceutically acceptable salts thereof as described herein intended for oral use can be prepared according to any method for the manufacture of pharmaceutical compositions and such compositions can contain one or more agents including sweetening agents, flavoring agents, coloring agents and preserving agents, in order to provide a palatable preparation. Tablets containing the active ingredient in admixture with non-toxic pharmaceutically acceptable excipient which are suitable for manufacture of tablets are acceptable. These excipients can be, for example, inert diluents, such as calcium or sodium carbonate, lactose, calcium or sodium phosphate; granulating and disintegrating agents, such as maize starch, or alginic acid; binding agents, such as starch, gelatin or acacia; and lubricating agents, such as magnesium stearate, stearic acid or talc. Tablets can be uncoated or can be coated by known techniques including microencapsulation to delay disintegration and adsorption in the gastrointestinal tract and thereby provide a sustained action over a longer period. For example, a time delay material such as glyceryl monostearate or glyceryl distearate alone or with a wax can be employed. [0199] For treatment of the eye or other external tissues, e.g., mouth and skin, the formulations are preferably applied as a topical ointment or cream containing the active ingredient(s) in an amount of, for example, 0.075 to 20% W/W. When formulated in an ointment, the active ingredients can be employed with either a paraffinic or a water-miscible ointment base. Alternatively, the active ingredients can be formulated in a cream with an oil-in-water cream base. If desired, the aqueous phase of the cream base can include a polyhydric alcohol, i.e., an alcohol having two or more hydroxyl groups such as propylene glycol, butane 1,3-diol, mannitol, sorbitol, glycerol, and polyethylene glycol (including PEG 400) and mixtures thereof. The topical formulations can desirably include a compound which enhances absorption or penetration of the active ingredient through the skin or other affected areas. Examples of such dermal penetration enhancers include dimethyl sulfoxide and related analogs. The oily phase of the emulsions of compositions provided herein can be constituted from known ingredients in a known manner. While the phase can comprise merely an emulsifier, it desirably comprises a mixture of at least one emulsifier with a fat or an oil or with both a fat and an oil. Preferably, a hydrophilic emulsifier is included together with a lipophilic emulsifier which acts as a stabilizer. It is also preferred to include both an oil and a fat. Together, the emulsifier(s) with or without stabilizer(s) make up the so-called emulsifying wax, and the wax together with the oil and fat make up the so-called emulsifying ointment base which forms the oily dispersed phase of the cream formulations. Emulsifiers and emulsion stabilizers suitable for use in the formulation of described herein include Tween® 60, Span® 80, cetostearyl alcohol, benzyl alcohol, myristyl alcohol, glyceryl mono-stearate and sodium lauryl sulfate. [0200] Aqueous suspensions comprising a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein can contain the active materials in admixture with excipients suitable for the manufacture of aqueous suspensions. Such excipients include a suspending agent, such as sodium carboxymethylcellulose, croscarmellose, povidone, methylcellulose, hydroxypropyl methylcellulose, sodium alginate, polyvinylpyrrolidone, gum tragacanth and gum acacia, and dispersing or wetting agents such as a naturally occurring phosphatide (e.g., lecithin), a condensation product of an alkylene oxide with a fatty acid (e.g., polyoxyethylene stearate), a condensation product of ethylene oxide with a long chain aliphatic alcohol (e.g., heptadecaethyleneoxycetanol), a condensation product of ethylene oxide with a partial ester derived from a fatty acid and a hexitol anhydride (e.g., polyoxyethylene sorbitan monooleate). The aqueous suspension can also contain one or more preservatives such as ethyl or n-propyl p- hydroxybenzoate, one or more coloring agents, one or more flavoring agents and one or more sweetening agents, such as sucrose or saccharin. [0201] The pharmaceutical compositions of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein can be in the form of a sterile injectable preparation, such as a sterile injectable aqueous or oleaginous suspension. This suspension can be formulated using suitable dispersing or wetting agents and suspending agents which have been mentioned above. The sterile injectable preparation can also be a sterile injectable solution or suspension in a non-toxic parenterally acceptable diluent or solvent, such as a solution in 1,3-butanediol or prepared as a lyophilized powder. Among the acceptable vehicles and solvents that can be employed are water, Ringer’s solution and isotonic sodium chloride solution. In addition, sterile fixed oils can conventionally be employed as a solvent or suspending medium. For this purpose, any bland fixed oil can be employed including synthetic mono- or diglycerides. In addition, fatty acids such as oleic acid can likewise be used in the preparation of injectables. [0202] The amount of active ingredient that can be combined with the carrier material to produce a single dosage form will vary depending upon the host treated and the particular mode of administration. For example, a time-release formulation intended for oral administration to humans can contain approximately 1 to 1000 mg of active material compounded with an appropriate and convenient amount of carrier material which can vary from about 5 to about 95% of the total compositions (weight:weight(w/w)). The pharmaceutical composition can be prepared to provide easily measurable amounts for administration. For example, an aqueous solution intended for intravenous infusion can contain from about 3 to 500 μg of the active ingredient per milliliter of solution in order that infusion of a suitable volume at a rate of about 30 mL/hr can occur. [0203] Formulations suitable for parenteral administration include aqueous and non-aqueous sterile injection solutions which can contain anti-oxidants, buffers, bacteriostats and solutes which render the formulation isotonic with the blood of the intended recipient; and aqueous and non- aqueous sterile suspensions which can include suspending agents and thickening agents. [0204] Formulations suitable for topical administration to the eye also include eye drops wherein the active ingredient is dissolved or suspended in a suitable carrier, especially an aqueous solvent for the active ingredient. The active ingredient is preferably present in such formulations in a concentration of about 0.5 to 20% w/w, for example about 0.5 to 10% w/w, for example about 1.5%w/w. [0205] Formulations suitable for topical administration in the mouth include lozenges comprising the active ingredient in a flavored basis, usually sucrose and acacia or tragacanth; pastilles comprising the active ingredient in an inert basis such as gelatin and glycerin, or sucrose and acacia; and mouthwashes comprising the active ingredient in a suitable liquid carrier. [0206] Formulations for rectal administration can be presented as a suppository with a suitable base comprising for example cocoa butter or a salicylate. [0207] Formulations suitable for intrapulmonary or nasal administration have a particle size for example in the range of 0.1 to 500 microns (including particle sizes in a range between 0.1 and 500 microns in increments microns such as 0.5, 1, 30 microns, 35 microns, etc.), which is administered by rapid inhalation through the nasal passage or by inhalation through the mouth so as to reach the alveolar sacs. Suitable formulations include aqueous or oily solutions of the active ingredient. Formulations suitable for aerosol or dry powder administration can be prepared according to conventional methods and can be delivered with other therapeutic agents such as compounds heretofore used in the treatment or prophylaxis disorders as described below. [0208] Formulations suitable for vaginal administration can be presented as pessaries, tampons, creams, gels, pastes, foams or spray formulations containing in addition to the active ingredient such carriers considered to be appropriate. [0209] The formulations can be packaged in unit-dose or multi-dose containers, for example sealed ampoules and vials, and can be stored in a freeze-dried (lyophilized) condition requiring only the addition of the sterile liquid carrier, for example water, for injection immediately prior to use. Extemporaneous injection solutions and suspensions are prepared from sterile powders, granules and tablets of the kind previously described. Preferred unit dosage formulations are those containing a daily dose or unit daily sub-dose, as herein above recited, or an appropriate fraction thereof, of the active ingredient. [0210] In one embodiment, the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof are formulated as a prodrug. The term prodrug as used herein refers to a derivative of a compound that can be hydrolyzed, oxidized, or cleaved under biological conditions to provide the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. A prodrug as defined herein includes derivatives comprising one or more moieties that modulate or improve one or more physical, physiological or pharmaceutical property such as, but not limited to, solubility, permeability, uptake, biodistribution, metabolic stability, onset of action or some other druglike property, and is transformed to the bioactive or more biologically active substance as provided herein. In one embodiment, a prodrug herein has no biological activity until release of the compound or pharmaceutically acceptable salt thereof. Methods of Administration [0211] Compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein can be administered by any route appropriate to the condition to be treated. Suitable routes include oral, parenteral (including subcutaneous, intramuscular, intravenous (IV), intraarterial, intradermal, intrathecal and epidural), transdermal, rectal, nasal, topical (including buccal and sublingual), vaginal, intraperitoneal, intrapulmonary and intranasal. In one embodiment, a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein is administered orally or by IV. For local immunosuppressive treatment, the compounds can be administered by intralesional administration, including perfusing or otherwise contacting the graft with the inhibitor before transplantation. It will be appreciated that the preferred route can vary with for example the condition of the recipient. Where the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof is administered orally, it can be formulated as a pill, capsule, tablet, etc. with a pharmaceutically acceptable carrier or excipient. Where the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof is administered parenterally, it can be formulated with a pharmaceutically acceptable parenteral vehicle and in a unit dosage injectable form, as detailed below. [0212] Thus, in one aspect provided herein is a pharmaceutical composition comprising a compound or pharmaceutically acceptable salt thereof as described herein and one or more pharmaceutically acceptable excipients. In one embodiment, compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein are administered as pharmaceutical compositions capable of being administered to a subject orally or parenterally. The compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein can be formulated for topical or parenteral use where the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof is dissolved or otherwise suspended in a solution suitable for injections, suspensions, syrups, creams, ointments, gels, sprays, solutions and emulsions. [0213] Oral administration can promote patient compliance in taking the compound (e.g., formulated as a pharmaceutical composition), thereby increasing compliance and efficacy. Oral pharmaceutical compositions comprising a compound described herein include, but are not limited to, tablets (e.g., coated, non-coated and chewable) and capsules (e.g., hard gelatin capsules, soft gelatin capsules, enteric coated capsules, and sustained release capsules). Tablets can be prepared by direct compression, by wet granulation, or by dry granulation. Oral pharmaceutical compositions comprising a compound described herein can be formulated for delayed or prolonged release. [0214] A dose to treat human patients can range from about 10 mg to about 1000 mg of a compound described herein. A typical dose can be about 100 mg to about 300 mg of the compound. A dose can be administered once a day (QID), twice per day (BID), or more frequently, depending on the pharmacokinetic and pharmacodynamic properties, including absorption, distribution, metabolism, and excretion of the particular compound. Administration as used herein refers to the frequency of dosing and not, for example, the number of individual units a patient described herein must take for a dose. Thus, in some embodiments, a patient may take two or more dosage units (e.g., two or more pills/tablets/capsules) QD. In addition, toxicity factors can influence the dosage and administration regimen. When administered orally, the pill, capsule, or tablet can be ingested daily or less frequently for a specified period of time. The regimen can be repeated for a number of cycles of therapy. Methods of Treating and Uses [0215] The compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein are useful as Ras inhibitors. In one aspect, the compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein are useful as KRas inhibitors. In another aspect, the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein are useful as NRas inhibitors. In another aspect, the compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein are useful as HRas inhibitors. In one embodiment, the compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein are useful as G12D Ras inhibitors, and as G12D KRas inhibitors. [0216] Provided herein are methods of contacting a cell, such as an ex vivo cell, with a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein, to inhibit Ras activity (e.g., KRas activity) in the cell. In another embodiment, the activity is mutant G12D KRas activity. [0217] Further provided herein are methods of treating a cancer comprising a KRas mutation, the method comprising administering to a patient having such cancer, an effective amount of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof or a pharmaceutical composition as described herein. In one embodiment, the KRas mutation is a KRasG12D mutation. [0218] In one embodiment, the methods further comprise testing a sample (e.g., as set forth herein) from the patient before administration of a compound of pharmaceutically acceptable salt thereof described herein for the absence or presence of a KRasG12D mutation. In one such embodiment, a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof or pharmaceutical composition described herein is administered to the patient after the patient sample is determined to be positive for (e.g., the presence of) a KRasG12D mutation. [0219] The methods of treating a cancer described herein relate to the treatment of cancer such as acute myeloid leukemia, cancer in adolescents, childhood adrenocortical carcinoma, AIDS-related cancers (e.g. lymphoma and Kaposi’s sarcoma), anal cancer, appendix cancer, astrocytomas, atypical teratoid rhabdoid tumor, basal cell carcinoma, bile duct cancer, bladder cancer, bone cancer, brain stem glioma, brain tumor, breast cancer, bronchial tumors, Burkitt lymphoma, carcinoid tumor, embryonal tumors, germ cell tumor, primary lymphoma, cervical cancer, childhood cancers, chordoma, cardiac tumors, chronic lymphocytic leukemia (CLL), chronic myelogenous leukemia (CML), chronic myeloproliferative disorders, colon cancer, colorectal cancer, craniopharyngioma, cutaneous T-cell lymphoma, extrahepatic ductal carcinoma in situ (DCIS), embryonal tumors, CNS cancer, endometrial cancer, ependymoma, esophageal cancer, esthesioneuroblastoma, Ewing sarcoma, extracranial germ cell tumor, extragonadal germ cell tumor, eye cancer, fibrous histiocytoma of bone, gall bladder cancer, gastric cancer, gastrointestinal carcinoid tumor, gastrointestinal stromal tumors (GIST), germ cell tumor, gestational trophoblastic tumor, hairy cell leukemia, head and neck cancer, heart cancer, liver cancer, Hodgkin’s lymphoma, hypopharyngeal cancer, intraocular melanoma, islet cell tumors, pancreatic neuroendocrine tumors, kidney cancer, laryngeal cancer, lip and oral cavity cancer, lobular carcinoma in situ (LCIS), lung cancer, lymphoma, metastatic squamous neck cancer with occult primary, midline tract carcinoma, mouth cancer, multiple endocrine neoplasia syndromes, multiple myeloma/plasma cell neoplasm, mycosis fungoides, myelodysplastic syndromes, myelodysplastic/myeloproliferative neoplasms, multiple myeloma, Merkel cell carcinoma, malignant mesothelioma, malignant fibrous histiocytoma of bone and osteosarcoma, nasal cavity and paranasal sinus cancer, nasopharyngeal cancer, neuroblastoma, non-Hodgkin’s lymphoma, non-small cell lung cancer (NSCLC), oral cancer, oropharyngeal cancer, ovarian cancer, pancreatic cancer, papillomatosis, paraganglioma, parathyroid cancer, penile cancer, pharyngeal cancer, pleuropulmonary blastoma, primary central nervous system (CNS) lymphoma, prostate cancer, rectal cancer, transitional cell cancer, retinoblastoma, rhabdomyosarcoma, salivary gland cancer, skin cancer, small cell lung cancer, small intestine cancer, soft tissue sarcoma, T-Cell lymphoma, testicular cancer, throat cancer, thymoma and thymic carcinoma, thyroid cancer, transitional cell cancer of the renal pelvis and ureter, trophoblastic tumor, unusual cancers of childhood, urethral cancer, uterine sarcoma, vaginal cancer, vulvar cancer, or viral-induced cancer. [0220] In some embodiments, the cancer is a hematological cancer, pancreatic cancer, MYH associated polyposis, colorectal cancer or lung cancer. In one embodiment, the cancer is lung cancer, colorectal cancer, appendiceal cancer, or pancreatic cancer. In one embodiment, the cancer is pancreatic cancer, lung cancer, or colon cancer. The lung cancer can be adenocarcinoma, non- small cell lung cancer (NSCLC), or small cell lung cancer (SCLC). In one embodiment, the cancer is colorectal cancer. In another embodiment, the cancer is pancreatic cancer. In one embodiment, the cancer is lung adenocarcinoma. [0221] The methods provided herein can also comprise testing a sample from the patient before administration of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein for the absence or presence of a KRasG12D mutation. In one embodiment, a compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof or pharmaceutical composition is administered to the patient after the patient sample shows the presence of a KRasG12D mutation. In one embodiment, a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein is not administered unless a patient sample comprises a KRasG12D mutation. [0222] In one embodiment, the cancer is pancreatic cancer, lung cancer, or colorectal cancer. In another embodiment, the cancer is tissue agnostic (comprises a KRasG12D mutation). In one such embodiment, the pancreatic cancer, lung cancer, or colorectal cancer comprises a KRasG12D mutation. [0223] Further provided herein are methods of treating lung cancer comprising a KRasG12D mutation in a patient having such a lung cancer. In one such embodiment, is a method (M1) of treating lung cancer comprising a KRasG12D mutation in a patient having such a lung cancer, the method comprising administering to the patient an effective amount of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof (or a pharmaceutical composition comprising the same) described herein. In one embodiment, the lung cancer is non-small cell lung carcinoma (NSCLC). In one embodiment, lung cancer is adenocarcinoma, NSCLC, squamous-cell lung carcinoma (SCLC) or large-cell lung carcinoma. In one embodiment, lung cancer is adenocarcinoma, NSCLC, or SCLC. In another embodiment, the lung cancer is small cell lung carcinoma. In still another embodiment, the lung cancer is glandular tumors, carcinoid tumors or undifferentiated carcinomas. The lung cancer can be stage I or II lung cancer. In one embodiment, the lung cancer is stage III or IV lung cancer. The methods provided herein include administration of the compound as a 1L therapy. [0224] Still further provided herein are methods of treating pancreatic cancer comprising a KRasG12D mutation in a patient having such pancreatic cancer. In one such embodiment, is a method (M2) of pancreatic lung cancer comprising a KRasG12D mutation in a patient having pancreatic cancer, the method comprising administering to the patient an effective amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein. In one embodiment, the patient has been previously treated with radiation and one or more chemotherapy agents. In one embodiment, the pancreatic cancer is stage 0, I, or II. In another embodiment, the pancreatic cancer is stage III or stage IV. [0225] Still further provided herein are methods of treating colon cancer comprising a KRasG12D mutation in a patient having such colon cancer. In one such embodiment, is a method (M3) of treating colon cancer comprising a KRasG12D mutation in a patient having, the method comprising administering to the patient an effective amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein to the patient. In one embodiment, the colon cancer is stage I or II. In another embodiment, the colon cancer is stage III or stage IV. [0226] In one embodiment of the methods M1, M2, and M3 as described herein, the method further comprises: [0227] (a) determining the absence or presence of a KRasG12D mutation in a sample taken from a patient with a suspected diagnosed cancer; and [0228] (b) administering to the patient an effective amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein. [0229] Further provided herein are methods of treating tissue agnostic cancer comprising a KRasG12D mutation. In one embodiment of such methods, the method comprises: [0230] (a) determining the absence or presence of a KRasG12D mutation in a sample taken from a patient with a suspected diagnosed cancer; and [0231] (b) administering to the patient an effective amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein. [0232] In one embodiment of such methods, the patient is diagnosed with a cancer described herein. In another embodiment of such methods, the sample is a tumor sample taken from the subject. In one such embodiment, the sample is taken before administration of any therapy. In another such embodiment, the sample is taken before administration of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein and after administration of another chemotherapeutic agent. In another embodiment of such methods, the compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein is administered as provided herein (e.g. orally or IV). [0233] Also provided herein is a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof for use as a therapeutically active substance. In one such embodiment, the compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof can be for the therapeutic treatment of a cancer comprising a KrasG12D mutation. [0234] Further provided herein is a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof for the therapeutic and/or prophylactic treatment of a cancer comprising a KRasG12D mutation. In one embodiment, the compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof is used in the preparation of a medicament for the therapeutic treatment of a cancer comprising a KRasG12D mutation. Still further provided herein are uses of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof as described herein in the manufacture of a medicament for inhibiting tumor metastasis. [0235] Further provided herein are methods for inhibiting tumor metastasis, the method comprising administering to a patient having a tumor a therapeutically effective amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein. In one embodiment, the inhibition is of a tumor comprising a KRasG12D mutation. In another embodiment, inhibiting tumor metastasis in a patient described herein results in reduction of tumor size. In another embodiment, inhibiting tumor metastasis in a patient described herein results in stabilizing (e.g. no further growth) of tumor size. In another embodiment, inhibiting tumor metastasis in a patient described herein results in remission of the cancer and/or its symptoms. [0236] Further provided herein are methods for inhibiting proliferation of a cell population, the method comprising contacting the cell population with a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein. In one embodiment, the cell population is in a human patient. In another embodiment, the cell population comprises a KRasG12D mutation. [0237] Further provided herein are methods of inhibiting KRas in a patient in need of therapy, comprising administering to the patient a therapeutically effective amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein. In one embodiment, the KRas inhibited is KRasG12D. In another embodiment, inhibiting KRas results in decreased tumor size. In another embodiment, inhibiting KRas results in remission of the cancer and/or its symptoms. [0238] Further provided herein are methods for regulating activity of a KRas mutant protein, the method comprising reacting the mutant protein with a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein. In one embodiment, the mutant protein comprises a KRasG12D mutation. In one embodiment, the activity of KRas is decreased after contacting with a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein. In another embodiment, the downregulation of activity of the KRas mutant protein treats a cancer described herein in a patient described herein. In another embodiment, the downregulation of activity of the KRas mutant protein results in decreased tumor size. In another embodiment, the downregulation of activity of the KRas mutant protein results in remission of a cancer described herein and/or its symptoms. [0239] In some embodiments, the methods provided herein comprise inhibiting KrasG12D activity in a cell by contacting said cell with an amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein sufficient to inhibit the activity of KRasG12D in said cell. In some embodiments, the methods provided herein comprise inhibiting KRasG12D activity in a tissue by contacting said tissue with an amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein sufficient to inhibit the activity of KRasG12D in said tissue. In some embodiments, the methods provided herein comprise inhibiting KRasG12D activity in a patient described herein by contacting said patient with an amount of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein sufficient to inhibit the activity of KRasG12D in said patient. [0240] Further provided herein are methods for preparing a labeled KRasG12D mutant protein, the method comprising reacting a KRasG12D mutant protein with a labeled compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein to result in the labeled KRasG12D mutant protein. In one embodiment, the label is an imaging agent. In one embodiment, the labeled KRasG12D can be used to detect the absence or presence of G12D mutant KRas in a patient sample, thereby detecting the presence or absence of a cancer mediated by mutant KRas. [0241] Still further provided herein are methods of inhibiting Ras-mediated cell signaling. In one embodiment, the methods comprise contacting a cell with an effective amount of one or more compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof disclosed herein thereof. Inhibition of Ras-mediated signal transduction can be assessed and demonstrated by a wide variety of ways known in the art. Non-limiting examples include a showing of (a) a decrease in GTPase activity of Ras; (b) a decrease in GTP binding affinity or an increase in GDP binding affinity; (c) an increase in K off of GTP or a decrease in K off of GDP; (d) a decrease in the levels of signaling transduction molecules downstream in the Ras pathway, such as a decrease in pMEK level; and/or (e) a decrease in binding of Ras complex to downstream signaling molecules including but not limited to Raf. Kits and commercially available assays can be utilized for determining one or more of the above. [0242] KRas mutations, including G12D mutants, have also been identified in hematological malignancies (e.g., cancers that affect blood, bone marrow, and/or lymph nodes). Accordingly, certain embodiments are directed to administration of a disclosed compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof (e.g., in the form of a pharmaceutical composition) as described herein to a patient in need of treatment of a hematological malignancy. Such malignancies include but are not limited to leukemias and lymphomas. For example, the presently disclosed compounds can be used for treatment of diseases such as acute lymphoblastic leukemia (ALL), acute myelogenous leukemia (AML), chronic lymphocytic leukemia (CLL), small lymphocytic lymphoma (SLL), chronic myelogenous leukemia (CML), acute monocytic leukemia (AMoL) and/ or other leukemias. In other embodiments, the compounds or a pharmaceutically acceptable salt thereof described herein are useful for treatment of lymphomas such as all subtypes of Hodgkin's lymphoma or non-Hodgkin's lymphoma. [0243] Determining whether a tumor or cancer comprises a KRasG12D mutation can be undertaken by assessing the nucleotide sequence encoding the KRas protein, by assessing the amino acid sequence of the KRas protein, or by assessing the characteristics of a putative KRas mutant protein. The sequence of wild-type human KRas (e.g., Accession No. NP203524) is known in the art. [0244] Methods for detecting a mutation in a KRas nucleotide sequence are known by those of skill in the art. These methods include, but are not limited to, polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) assays, polymerase chain reaction-single strand conformation polymorphism (PCR-SSCP) assays, real-time PCR assays, PCR sequencing, mutant allele-specific PCR amplification (MASA) assays, direct sequencing, primer extension reactions, electrophoresis, oligonucleotide ligation assays, hybridization assays, TaqMan assays, SNP genotyping assays, high resolution melting assays and microarray analyses. In some embodiments, samples are evaluated for G12d KRas mutations by real-time PCR. In real-time PCR, fluorescent probes specific for the KRas G12D mutation are used. When a mutation is present, the probe binds and fluorescence is detected. In some embodiments, the KRas G12D mutation is identified using a direct sequencing method of specific regions (e.g., exon 2 and/or exon 3) in the KRas gene. This technique will identify all possible mutations in the region sequenced. [0245] Methods for determining whether a tumor or cancer comprises a KRasG12D mutation can use a variety of samples. In some embodiments, the sample is taken from a subject having a tumor or cancer. In some embodiments, the sample is a fresh tumor/cancer sample. In some embodiments, the sample is a frozen tumor/cancer sample. In some embodiments, the sample is a formalin-fixed paraffin-embedded sample. In some embodiments, the sample is processed to a cell lysate. In some embodiments, the sample is processed to DNA or RNA. [0246] Further provided herein are uses of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein, in the manufacture of a medicament for treating cancer. In some embodiments, the medicament is formulated for oral administration. In some embodiments, the medicament is formulated for injection (e.g. IV administration). In some embodiments, the cancer comprises a KRasG12D mutation. In some embodiments, the cancer is a hematological cancer, pancreatic cancer, MYH associated polyposis, colorectal cancer or lung cancer. In one embodiment, the cancer is lung cancer, colorectal cancer, or pancreatic cancer. In one embodiment, the cancer is colorectal cancer. In another embodiment, the cancer is pancreatic cancer. In some embodiments, the cancer is lung adenocarcinoma. In some embodiments, are uses of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein, in the manufacture of a medicament for inhibiting tumor metastasis. Combination Therapies [0247] The compounds or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein may be employed alone or in combination with other therapeutic agents for the treatment of a disease or disorder described herein. The second compound of the pharmaceutical combination formulation or dosing regimen preferably has complementary activities to the compound or a pharmaceutically acceptable salt thereof described herein such that they do not adversely affect each other. The combination therapy may provide "synergy" and prove "synergistic", i.e., the effect achieved when the active ingredients used together is greater than the sum of the effects that results from using the compounds separately. [0248] The combination therapy may be administered as a simultaneous or sequential regimen. When administered sequentially, the combination may be administered in two or more administrations. The combined administration includes co-administration, using separate formulations or a single pharmaceutical formulation, and consecutive administration in either order, wherein preferably there is a time period while both (or all) active agents simultaneously exert their biological activities. [0249] Combination therapies herein comprise the administration of a compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein, and the use of at least one other treatment method. The amounts of the compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein and the other pharmaceutically active agent(s) and the relative timings of administration will be selected in order to achieve the desired combined therapeutic effect. [0250] In various embodiments of the method, the additional therapeutic agent is an epidermal growth factor receptor (EGFR) inhibitor, phosphatidylinositol kinase (PI3K) inhibitor, insulin-like growth factor receptor (IGF1R) inhibitor, a Janus kinase (JAK) inhibitor, a Met kinase inhibitor, a SRC family kinase inhibitor, a mitogen-activated protein kinase (MEK) inhibitor, an extracellular- signal-regulated kinase (ERK) inhibitor, a topoisomerase inhibitor (such as irinotecan, or such as etoposide, or such as doxorubicin), a taxane (such as anti-microtubule agents including paclitaxel and docetaxel), an anti-metabolite agent (such as 5-FU or such as gemcitabine), or an alkylating agent (such as cisplatin or such as cyclophosphamide), or a taxane. [0251] In some embodiments, the additional therapeutic agent is an epidermal growth factor receptor (EGFR) inhibitor, such as Erlotinib or such as Afatinib. In some embodiments the additional therapeutic agent is gefitinib, osimertinib, or dacomitinib. In some embodiments the additional therapeutic agent is a monoclonal antibody such as cetuximab (Erbitux) or panitumumab (Vectibix). In some embodiments the GFR inhibitor is a dual or pan- HER inhibitor. In other embodiments, the additional therapeutic agent is a phosphatidylinositol-3-kinase (PI3K) inhibitor, such as GDC-0077, GDC-0941, MLN1117, BYL719 (Alpelisib) or BKM120 (Buparlisib). GDC- 0941 refers to 2-(1H-indazol-4-yl)-6-(4- methanesulfonyl-piperazin-1-ylmethyl)-4-morpholin-4-yl- thieno[3,2-d]pyrimidine or a salt thereof (e.g., bismesylate salt). [0252] In still other embodiments, the additional therapeutic agent is an insulin-like growth factor receptor (IGF1R) inhibitor. For example, in some embodiments the insulin-like growth factor receptor (IGF1R) inhibitor is NVP-AEW541. In other embodiments, the additional therapeutic agent is IGOSI-906 (Linsitinib), BMS-754807, or in other embodiments the additional therapeutic agent is a neutralizing monoclonal antibody specific to IGF1R such as AMG-479 (ganitumab), CP- 751,871 (figitumumab), IMC-A12 (cixutumumab), MK-0646 (dalotuzumab), or R-1507 (robatumumab). [0253] In some other embodiments, the additional therapeutic agent is a Janus kinase (JAK) inhibitor. In some embodiments, the additional therapeutic agent is CYT387, GLPG0634, Baricitinib, Lestaurtinib, momelotinib, Pacritinib, Ruxolitinib, or TG101348. [0254] In some other embodiments, the additional therapeutic agent is an anti-glypican 3 antibody. In some embodiments, the anti-glypican 3 antibody is codrituzumab. [0255] In some other embodiments, the additional therapeutic agent is an antibody drug conjugate (ADC). In some embodiments, the ADC is polatuzumab vedotin, RG7986, RG7882, RG6109, or RO7172369. [0256] In some other embodiments, the additional therapeutic agent is an MDM2 antagonist. In some embodiments, the MDM2 antagonist is idasanutlin. [0257] In some other embodiments, the additional therapeutic agent is an agonistic antibody against CD40. In some embodiments, the agonistic antibody against CD40 is selicrelumab (RG7876). [0258] In some other embodiments, the additional therapeutic agent is a bispecific antibody. In some embodiments, the bispecific antibody is RG7828 (BTCT4465A), RG7802, RG7386 (FAP- DR5), RG6160, RG6026, ERY974, or anti-HER2/CD3. [0259] In some other embodiments, the additional therapeutic agent is a targeted immunocytokine. In some embodiments, the targeted immunocytokine is RG7813 or RG7461. [0260] In some other embodiments, the additional therapeutic agent is an antibody targeting colony stimulating factor-1 receptor (CSF-1R). In some embodiments, the CSF-1R antibody is emactuzumab. [0261] In some other embodiments, the additional therapeutic agent is a personalized cancer vaccine. In some embodiments, the personalized cancer vaccine is RG6180. [0262] In some other embodiments, the additional therapeutic agent is an inhibitor of BET (bromodomain and extraterminal family) proteins (BRD2/3/4/T). In some embodiments, the BET inhibitor is RG6146. [0263] In some other embodiments, the additional therapeutic agent is an antibody designed to bind to TIGIT. In some embodiments, the anti-TIGIT antibody is RG6058 (MTIG7192A). [0264] In some other embodiments, the additional therapeutic agent is a selective estrogen receptor degrader (SERD). In some other embodiments, the SERD is RG6047 (GDC-0927) or RG6171 (GDC-9545, giredestrant). [0265] In some other embodiments the additional therapeutic agent is an MET kinase inhibitor, such as Crizotinib, tivantinib, AMG337, cabozantinib, or foretinib. In other embodiments the additional therapeutic agent is a neutralizing monoclonal antibody to MET such as onartuzumab. [0266] In more embodiments, the additional therapeutic agent is a SRC family non-receptor tyrosine kinase inhibitor. For example, in some embodiments the additional therapeutic agent is an inhibitor of the subfamily of SRC family non-receptor tyrosine kinases. Exemplary inhibitors in this respect include Dasatinib. Other examples in this regard include Ponatinib, saracatinib, and bosutinib. [0267] In yet other embodiments, the additional therapeutic agent is a mitogen-activated protein kinase (MEK) inhibitor. In some of these embodiments, the mitogen-activated protein kinase (MEK) inhibitor is trametinib, selumetinib, COTELLIC® (cobimetinib), PD0325901, or RO5126766. In other embodiments the MEK inhibitor is GSK-1120212, also known as trametinib. [0268] In yet other embodiments, the additional therapeutic agent is an extracellular-signal- regulated kinase (ERK) inhibitor. In some of these embodiments, the mitogen-activated protein kinase (MEK) inhibitor is SCH722984 or GDC-0994. [0269] In other embodiments the protein kinase inhibitor is taselisib, ipatasertib, GDC-0575, GDC- 5573 (HM95573), RG6114 (GDC-0077), CKI27, Afatinib, Axitinib, Atezolizumab, Bevacizumab, Bostutinib, Cetuximab, Crizotinib, Dasatinib, Erlotinib, Fostamatinib, Gefitinib, Imatinib, Lapatinib, Lenvatinib, Ibrutinib, Nilotinib, Panitumumab, Pazopanib, Pegaptanib, Ranibizumab, Ruxolitinib, Sorafenib, Sunitinib, SU6656, Trastuzumab, Tofacitinib, Vandetanib, or Vemurafenib. In still more embodiments, the additional therapeutic agent is a topoisomerase inhibitor. In some of these embodiments, the topoisomerase inhibitor is Irinotecan. In some more embodiments, the additional therapeutic agent is a taxane. Exemplary taxanes include Taxol and Docetaxel. [0270] In addition to the above additional therapeutic agent, other chemotherapeutics are presently known in the art and can be used in combination with the compounds and pharmaceutically acceptable salts thereof described herein. In some embodiments, the chemotherapeutic is selected from the group consisting of mitotic inhibitors, alkylating agents, anti-metabolites, intercalating antibiotics, growth factor inhibitors, cell cycle inhibitors, enzymes, topoisomerase inhibitors, biological response modifiers, anti-hormones, angiogenesis inhibitors, and anti-androgens. [0271] Non-limiting examples are chemotherapeutic agents, cytotoxic agents, and non-peptide small molecules such as Gleevec® (Imatinib Mesylate), Velcade® (bortezomib), Casodex (bicalutamide), Iressa® (gefitinib), and Adriamycin as well as a host of chemotherapeutic agents. Non-limiting examples of chemotherapeutic agents include alkylating agents such as thiotepa and cyclosphosphamide (CYTOXAN™); alkyl sulfonates such as busulfan, improsulfan and piposulfan; aziridines such as benzodopa, carboquone, meturedopa, and uredopa; ethylenimines and methyl melamines including altretamine, triethylenemelamine, triethylenephosphoramide, triethylenethiophosphaoramide and trimethylol melamine; nitrogen mustards such as chlorambucil, chlornaphazine, cyclophosphamide, estramustine, ifosfamide, mechlorethamine, mechlorethamine oxide hydrochloride, melphalan, novembichin, phenesterine, prednimustine, trofosfamide, uracil mustard; nitrosoureas such as carmustine, chlorozotocin, fotemustine, lomustine, nimustine, ranimustine; antibiotics such as aclacinomysins, actinomycin, authramycin, azaserine, bleomycins, cactinomycin, calicheamicin, carabicin, carminomycin, carzinophilin, Casodex™, chromomycins, dactinomycin, daunorubicin, detorubicin, 6-diazo-5-oxo- L-norleucine, doxorubicin, epirubicin, esorubicin, idarubicin, marcellomycin, mitomycins, mycophenolic acid, nogalamycin, olivomycins, peplomycin, potfiromycin, puromycin, quelamycin, rodorubicin, streptonigrin, streptozocin, tubercidin, ubenimex, zinostatin, zorubicin; anti-metabolites such as methotrexate and 5-fluorouracil (5-FU); folic acid analogues such as denopterin, methotrexate, pteropterin, trimetrexate; purine analogs such as fludarabine, 6-mercaptopurine, thiamiprine, thioguanine; pyrimidine analogs such as ancitabine, azacitidine, 6-azauridine, carmofur, cytarabine, dideoxyuridine, doxifluridine, enocitabine, floxuridine, androgens such as calusterone, dromostanolone propionate, epitiostanol, mepitiostane, testolactone; anti-adrenals such as aminoglutethimide, mitotane, trilostane; folic acid replenisher such as frolinic acid; aceglatone; aldophosphamide glycoside; aminolevulinic acid; amsacrine; bestrabucil; bisantrene; edatraxate; defofamine; demecolcine; diaziquone; elfomithine; elliptinium acetate; etoglucid; gallium nitrate; hydroxyurea; lentinan; lonidamine; mitoguazone; mitoxantrone; mopidamol; nitracrine; pentostatin; phenamet; pirarubicin; podophyllinic acid; 2- ethylhydrazide; procarbazine; polysaccharide K; razoxane; sizofiran; spirogermanium; tenuazonic acid; triaziquone; 2,2',2''-trichlorotriethylamine; urethan; vindesine; dacarbazine; mannomustine; mitobronitol; mitolactol; pipobroman; gacytosine; arabinoside (“Ara-C”); cyclophosphamide; thiotepa; taxanes, e.g. paclitaxel (TAXOLTM, Bristol-Myers Squibb Oncology, Princeton, N.J.) and docetaxel (TAXOTERETM, Rhone-Poulenc Rorer, Antony, France); retinoic acid; esperamicins; capecitabine; and pharmaceutically acceptable salts, acids or derivatives of any of the above. Also included as suitable chemotherapeutic cell conditioners are anti-hormonal agents that act to regulate or inhibit hormone action on tumors such as anti-estrogens including for example tamoxifen, (Nolvadex™), raloxifene, aromatase inhibiting 4(5)-imidazoles, 4-hydroxytamoxifen, trioxifene, keoxifene, LY 117018, onapristone, and toremifene (Fareston); anti-androgens such as flutamide, nilutamide, bicalutamide, leuprolide, and goserelin; chlorambucil; gemcitabine; 6-thioguanine; mercaptopurine; methotrexate; platinum analogs such as cisplatin and carboplatin; vinblastine; platinum; etoposide (VP-16); ifosfamide; mitomycin C; mitoxantrone; vincristine; vinorelbine; navelbine; novantrone; teniposide; daunomycin; aminopterin; Xeloda®; ibandronate; camptothecin- 11 (CPT-11); topoisomerase inhibitor RFS 2000; and difluoromethylornithine (DMFO). Where desired, the compounds or pharmaceutical acceptable salts thereof or pharmaceutical composition as described herein can be used in combination with commonly prescribed anti-cancer drugs such as Herceptin®, Avastin®, Gazyva®, Tecentriq®, Alecensa®, Perjeta®, Venclexta™, Erbitux®, Rituxan®, Taxol®, Arimidex®, Taxotere®, ABVD, AVICINE, Abagovomab, Acridine carboxamide, Adecatumumab, 17-N-Allylamino-17-demethoxygeldanamycin, Alpharadin, Alvocidib, 3-Aminopyridine-2-carboxaldehyde thiosemicarbazone, Amonafide, Anthracenedione, Anti-CD22 immunotoxins, Antineoplastic, Antitumorigenic herbs, Apaziquone, Atiprimod, Azathioprine, Belotecan, Bendamustine, BIBW 2992, Biricodar, Brostallicin, Bryostatin, Buthionine sulfoximine, CBV (chemotherapy), Calyculin, cell-cycle nonspecific antineoplastic agents, Dichloroacetic acid, Discodermolide, Elsamitrucin, Enocitabine, Epothilone, Eribulin, Everolimus, Exatecan, Exisulind, Ferruginol, Forodesine, Fosfestrol, ICE chemotherapy regimen, IT-101, Imexon, Imiquimod, Indolocarbazole, Irofulven, Laniquidar, Larotaxel, Lenalidomide, Lucanthone, Lurtotecan, Mafosfamide, Mitozolomide, Nafoxidine, Nedaplatin, Olaparib, Ortataxel, PAC-1, Pawpaw, Pixantrone, Proteasome inhibitor, Rebeccamycin, Resiquimod, Rubitecan, SN-38, Salinosporamide A, Sapacitabine, Stanford V, Swainsonine, Talaporfin, Tariquidar, Tegafur-uracil, Temodar, Tesetaxel, Triplatin tetranitrate, Tris(2-chloroethyl)amine, Troxacitabine, Uramustine, Vadimezan, Vinflunine, ZD6126 or Zosuquidar. [0272] The exact method for administering the compound and the additional therapeutic agent will be apparent to one of ordinary skill in the art. In some exemplary embodiments the compound and the additional therapeutic agent are co-administered. In other embodiments, the compound and the additional therapeutic agent are separately administered. [0273] In some embodiments, the compound and the additional therapeutic agent are administered with the second agent simultaneously or separately. This administration in combination can include simultaneous administration of the two agents in the same dosage form, simultaneous administration in separate dosage forms, and separate administration. That is, the compound and any of the additional therapeutic agents described herein can be formulated together in the same dosage form and administered simultaneously. Alternatively, the compound and any of the additional therapeutic agents described herein can be simultaneously administered, wherein both the agents are present in separate formulations. In another alternative, the compound can be administered just followed by any of the additional therapeutic agents described herein, or vice versa. In some embodiments of the separate administration protocol, the compound and any of the additional therapeutic agents described herein are administered a few minutes apart, or a few hours apart, or a few days apart. Articles of Manufacture [0274] Also provided herein are articles of manufacture, or "kit", containing materials useful for the treatment of a cancer provided herein. In one embodiment, the kit comprises a container comprising compound or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof described herein. The kit may further comprise a label or package insert on or associated with the container. Suitable containers include, for example, bottles, vials, syringes, blister pack, etc. The container may be formed from a variety of materials such as glass or plastic. The container may hold a compound or a pharmaceutically acceptable salt thereof described herein or a formulation thereof which is effective for treating the condition and may have a sterile access port (for example, the container may be an intravenous solution bag or a vial having a stopper pierceable by a hypodermic injection needle). At least one active agent in the composition is a compound or a pharmaceutically acceptable salt thereof described herein. Alternatively, or additionally, the article of manufacture may further comprise a second container comprising a pharmaceutical diluent, such as bacteriostatic water for injection (BWFI), phosphate-buffered saline, Ringer's solution or dextrose solution. It may further include other materials desirable from a commercial and user standpoint, including other buffers, diluents, filters, needles, and syringes. [0275] In another embodiment, the kits are suitable for the delivery of solid oral forms of a compound or a pharmaceutically acceptable salt thereof described herein, such as tablets or capsules. Such a kit can include a number of unit dosages. An example of such a kit is a "blister pack". Blister packs are well known in the packaging industry and are widely used for packaging pharmaceutical unit dosage forms. ENUMERATED EMBODIMENTS [0276] The disclosure also includes the following embodiments: [0277] Embodiment I-1. A compound of formula (I),
Figure imgf000128_0001
or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2;
Figure imgf000129_0001
wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, CN, NH2, N(Me)2, C1-3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1-3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z1 is L1NR5R6, wherein: L1 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L2NR8R9, C1-6alkyl, L2Cy, or S(=O)2R8, wherein: L2 is selected from: -S(=O)2(CH2)q-, -C(=O)(CH2)q-, -(CH2)q-, -P(=O)3(CH2)q-, –(CH2)–CH=CH–, and –CH=CH–(CH2)–, wherein q = 1 – 3; R8 and R9 are each independently hydrogen, C1-6alkyl, or C1-3haloalkyl; and Cy is a 3 – 10 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, two or three chained rings, and a spirocyclic ring; R6 is H or C1-6alkyl; or R5 and R6 together with the nitrogen atom to which they are both bonded form a group Q; wherein Q is: a 3 – 10 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, two or three chained rings, and a spirocyclic ring; optionally substituted with one or more groups R10 independently selected from: sulfonyl, cyano, halo, -NH2, -NHR11, -N(R11)2, -R11-NH2, -R11-NH-R11, R11-amino- (R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6cycloalkyl, C1-6alkoxy-C1-6alkyl, C2-6alkenyl, hydroxy-C1-6alkyl, oxo, C1-6alkylcarbenyl, carboxy-C1-6alkyl, and halo-C1-6alkyl; wherein each R11 is independently selected from C1-6alkyl, C1-6haloalkyl, and hydroxyl-C1-6alkyl; wherein Q optionally comprises one or more heteroatoms selected from O and N in addition to the nitrogen atom to which R5 and R6 are both bonded, wherein each additional instance of N is present in Q as N–H, N(R11), or as a tertiary N; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. [0278] Embodiment I-2. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein X is -NR12-. [0279] Embodiment I-3. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-2, wherein X is -NH-. [0280] Embodiment I-4. A compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein: m = 0; n = 1; and p = 1. [0281] Embodiment I-5. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein no more than one of R01, R02, R03, R04, and R05 is hydrogen. [0282] Embodiment I-6. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein no more than two of R01, R02, R03, R04, and R05 is hydrogen. [0283] Embodiment I-7. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein one of R01, R02, R03, R04, and R05 is halogen. [0284] Embodiment I-8. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein one of R01, R02, R03, R04, and R05 is C1-3-haloalkyl. [0285] Embodiment I-9. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein one of R01, R02, R03, R04, and R05 is amino. [0286] Embodiment I-10. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein R1 is: [0287] Embodiment I-11. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein R1 is:
Figure imgf000131_0001
[0288] Embodiment I-12. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein
Figure imgf000132_0001
[0289] Embodiment I-13. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein R2 is fluoro. [0290] Embodiment I-14. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein R3' and R3'' are both H. [0291] Embodiment I-15. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein each R4' is hydrogen and R4'' is methyl. [0292] Embodiment I-16. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein each R4' is hydrogen and R4'' is CF3. [0293] Embodiment I-17. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein, when present, at least one of R10 is selected from -NH2, -NHR11, -N(R11)2, -R11-NH2, -R11-NH-R11, -R11-N-(R11)2. [0294] Embodiment I-18. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring. [0295] Embodiment I-19. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-1, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a pyrrolidine ring. [0296] Embodiment I-20. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-17, wherein one R10 is dimethylamino. [0297] Embodiment I-21. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-17, wherein one R10 is methyl. [0298] Embodiment I-22. A compound of formula (II),
or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2;
Figure imgf000133_0001
wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, CN, NH2, N(Me)2, C1-3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1- 3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z2 is L0OR5, wherein: L0 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L1J1, or L2Q, wherein: L1 is selected from: –(CH2)q–, –(CH2)C(Ra)(Rb)–, –(CH2)C(H)(Ra)C(H)(Rb)–, –C(H)(Ra)C(H)(Rb)–, –(CH2)Cy– and a bond, wherein q = 1 – 3, Ra and Rb together with the carbon atoms to which each is attached form a ring, and Cy is an optionally substituted 1,2-linked cyclopropyl ring; J1 is selected from: cyano, –N(R8)C(=O)–, –C(=O)NR8R9, –C(=O)OR8, OR8, and R8; wherein R8 and R9 are independently selected from H, C1-6alkyl, C2-6alkenyl, and phenyl, with the proviso that R8 and R9 are not both H; and wherein Cy, Ra, Rb, R8 and R9 are each optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, alkylcarboxy, C1-6alkoxy, and oxo; and L2 is selected from: –(CHR13)q–, -(CH2)q-C(=O)- and a bond; Qis a 3 – 11 membered ring selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, and a spirocyclic ring; wherein Q is optionally substituted with one or more groups independently selected from: halogen, sulfonyl, cyano, oxo, NR13C(=O)R14, C(=O)R14, hydroxyl, OR14, and R14; R13 and R14 are independently selected from: hydrogen, C1-6alkyl, and C2- 6alkenyl; and wherein R13 and R14 are each optionally and independently substituted by one or more groups selected from: sulfonyl, - =S(=O)2(R11), cyano, halogen, oxo, hydroxyl, C1-6alkoxy, and C1-6alkylcarboxy; and wherein Q optionally comprises one or more heteroatoms selected from O, S, S(O)2 and N, wherein each instance of N is present in Q as an amide, amide lactam, or when Q is a heteroaromatic ring moiety; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. [0299] Embodiment I-23. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein X is -NR12-. [0300] Embodiment I-24. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-23, wherein X is -NH-. [0301] Embodiment I-25. A compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein: m = 0; n = 1; and p = 1. [0302] Embodiment I-26. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein no more than one of R01, R02, R03, R04, and R05 is hydrogen. [0303] Embodiment I-27. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein no more than two of R01, R02, R03, R04, and R05 is hydrogen. [0304] Embodiment I-28. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein one of R01, R02, R03, R04, and R05 is halogen. [0305] Embodiment I-29. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein one of R01, R02, R03, R04, and R05 is C1-3-haloalkyl. [0306] Embodiment I-30. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein one of R01, R02, R03, R04, and R05 is amino. [0307] Embodiment I-31. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein R1 is:
Figure imgf000135_0001
[0308] Embodiment I-32. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein R1 is:
Figure imgf000136_0001
[0309] Embodiment I-33. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein
Figure imgf000136_0002
[0310] Embodiment I-34. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein R2 is fluoro. [0311] Embodiment I-35. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein R3' and R3'' are both H. [0312] Embodiment I-36. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein each R4' is hydrogen and R4'' is methyl. [0313] Embodiment I-37. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein each R4' is hydrogen and R4'' is CF3. [0314] Embodiment I-38. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein L1 is a bond. [0315] Embodiment I-39. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-22, wherein Q is selected from: cyclopropane, cyclobutane, cyclohexane, benzene, pyrollidine, piperidine, morpholine, pyridine, pyridazine, pyrazine, pyrimidine, 1,4-dioxane, 1H-pyrazole, isoindoline-1,3-dione, 2- oxabicyclo[2.1.1]hexane, tetrahydrofuran, oxetane, tetrahydropyran, thietane, 2,3- dihydrobenzofuran, iso-oxazole, bicyclo[1.1.1]pentane, 6,7-dihydro-5H-pyrrolo[1,2- a]imidazole, imidazole, tetrahydro-2H-thiopyran, 1,2,4-triazole, and 9-oxa-2- azaspiro[5.5]undecane. [0316] Embodiment I-40. A compound of formula (III),
Figure imgf000137_0001
or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2;
Figure imgf000137_0002
wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, CN, NH2, N(Me)2, C1-3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1-3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z3 is L1OR5, wherein: L1 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L2J, or L2QJ, wherein: L2 is selected from: –(CH2)q–, –(CH2)q–C(=O)–, and a bond, wherein q = 1 – 3; J is C1-6alkyl-NR8R9 or -NR8R9; wherein R8 and R9 are independently selected from H, C1-6alkyl, and C2- 6alkenyl; wherein J is optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, and C1-6alkoxy; and, when not H, each of R8 and R9 is optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, C1- 6alkylcarboxy, C1-6alkoxy, C1-6cycloalkyl, 5-6 membered heterocyclyl, and oxo; Q is a 3 – 8 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, and a spirocyclic ring; wherein Q is optionally substituted with one or more groups independently selected from: halogen, cyano, oxo, hydroxyl, C1-6alkoxy, and C1- 6haloalkyl; wherein Q optionally comprises one or more heteroatoms selected from O, S, and N; wherein L2 and J both bond to the same ring atom of Q; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. [0317] Embodiment I-41. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein X is -NR12-. [0318] Embodiment I-42. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-41, wherein X is -NH-. [0319] Embodiment I-43. A compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein: m = 0; n = 1; and p = 1. [0320] Embodiment I-44. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein no more than one of R01, R02, R03, R04, and R05 is hydrogen. [0321] Embodiment I-45. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein no more than two of R01, R02, R03, R04, and R05 is hydrogen. [0322] Embodiment I-46. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein one of R01, R02, R03, R04, and R05 is halogen. [0323] Embodiment I-47. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein one of R01, R02, R03, R04, and R05 is C1-3-haloalkyl. [0324] Embodiment I-48. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein one of R01, R02, R03, R04, and R05 is amino. [0325] Embodiment I-49. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein R1 is:
Figure imgf000139_0001
[0326] Embodiment I-50. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein R1 is:
Figure imgf000140_0001
[0327] Embodiment I-51. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein
Figure imgf000140_0002
[0328] Embodiment I-52. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein R2 is fluoro. [0329] Embodiment I-53. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein R3' and R3'' are both H. [0330] Embodiment I-54. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein each R4' is hydrogen and R4'' is methyl. [0331] Embodiment I-55. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment I-40, wherein each R4' is hydrogen and R4'' is CF3. [0332] Embodiment I-56. The compound of Embodiment I-40, wherein Q is cyclopropyl. [0333] Embodiment I-57. The compound of Embodiment I-40, wherein q = 1. [0334] Embodiment I-58. A compound selected from any one of compounds I-182 as set forth in Table 1 or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0335] Embodiment I-59. A pharmaceutical composition comprising a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments I-58, and one or more pharmaceutically acceptable excipients. [0336] Embodiment I-60. A method of treating cancer, the method comprising administering an effective amount of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments I-1 to I-58, or a pharmaceutical composition of Embodiment I-59. [0337] Embodiment I-61. The method of Embodiment I-60, wherein the cancer is characterized as comprising a KRas mutation. [0338] Embodiment I-62. The method of Embodiment I-61, wherein the KRas mutation corresponds to a KRasG12D mutation. [0339] Embodiment I-63. The method of any one of Embodiments I-60 to I-61, further comprising testing a sample from the patient before administration for the absence or presence of a KRasG12D mutation. [0340] Embodiment I-64. The method of Embodiment I-63, wherein the compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof or pharmaceutical composition is administered to the patient after the patient sample shows the presence of a KRasG12D mutation. [0341] Embodiment I-65. The method of any one of Embodiments I-60 to I-64, wherein the cancer is tissue agnostic. [0342] Embodiment I-66. The method of any one of Embodiments I-60 to I-64, wherein the cancer is pancreatic cancer, lung cancer, or colorectal cancer. [0343] Embodiment I-67. The method of Embodiment I-66, wherein the lung cancer is lung adenocarcinoma, NSCLC, or SCLC. [0344] Embodiment I-68. The method of Embodiment I-66, wherein the cancer is pancreatic cancer. [0345] Embodiment I-69. The method of Embodiment I-66, wherein the cancer is colorectal cancer. [0346] Embodiment I-70. The method of any one of Embodiments I-60 to I-64, further comprising administering at least one additional therapeutic agent. [0347] Embodiment I-71. The method of Embodiment I-70, wherein the additional therapeutic agent comprises an epidermal growth factor receptor (EGFR) inhibitor, phosphatidylinositol kinase (PI3K) inhibitor, insulin-like growth factor receptor (IGF1R) inhibitor, a Janus kinase (JAK) inhibitor, a Met kinase inhibitor, a SRC family kinase inhibitor, a mitogen-activated protein kinase (MEK) inhibitor, an extracellular-signal-regulated kinase (ERK) inhibitor, a topoisomerase inhibitor, a taxane, an anti-metabolite agent, or an alkylating agent. [0348] Embodiment I-72. A compound according to any one of Embodiments I-1 to I-58, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use as a therapeutically active substance. [0349] Embodiment I-73. Use of a compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for the therapeutic treatment of a cancer comprising a KRasG12D mutation. [0350] Embodiment I-74. Use of a compound according to any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically salt thereof, in the manufacture of a medicament for inhibiting tumor metastasis. [0351] Embodiment I-75. Use of a compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for the preparation of a medicament for the therapeutic treatment of a cancer comprising a KRasG12D mutation. [0352] Embodiment I-76. A compound according to any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically salt thereof, for the therapeutic and/or prophylactic treatment of a cancer comprising a KRasG12D mutation. [0353] Embodiment I-77. A method for regulating activity of a KRas mutant protein, the method comprising reacting the mutant protein with a compound of any one of Embodiments I- 1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0354] Embodiment I-78. A method for inhibiting proliferation of a cell population, the method comprising contacting the cell population with the compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0355] Embodiment I-79. A method of Embodiment I-78, wherein the inhibition of proliferation is measured as a decrease in cell viability of the cell population. [0356] Embodiment I-80. A method for inhibiting tumor metastasis comprising administering to an individual in need thereof a therapeutically effective amount of the compound of any one of Embodiments to I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof to a subject in need thereof. [0357] Embodiment I-81. A compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use in regulating activity of a KRas mutant protein. [0358] Embodiment I-82. A compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use in inhibiting proliferation of a cell population. [0359] Embodiment I-83. The compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt for use of Embodiment I-82, wherein the inhibition of proliferation is measured as a decrease in cell viability of the cell population. [0360] Embodiment I-84. A compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use in inhibiting tumor metastasis. [0361] Embodiment I-85. Use of a compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for regulating activity of a KRas mutant protein. [0362] Embodiment I-86. Use of a compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for inhibiting proliferation of a cell population. [0363] Embodiment I-87. The use of Embodiment I-86, wherein the inhibition of proliferation is measured as a decrease in cell viability of the cell population. [0364] Embodiment I-88. Use of a compound of any one of Embodiments I-1 to I-58, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for inhibiting tumor metastasis. [0365] Embodiment II-1. A compound of formula (I),
Figure imgf000143_0001
or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2;
Figure imgf000144_0001
, wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, -CN, -NH2, -N(Me)2, C1- 3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is -NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1-3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z1 is L1NR5R6, wherein: L1 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L2NR8R9, C1-6alkyl, L2Cy, or -S(=O)2R8, wherein: L2 is selected from: -S(=O)2(CH2)q-, -C(=O)(CH2)q-, -(CH2)q-, -P(=O)3(CH2)q-, –(CH2)–CH=CH–, and –CH=CH–(CH2)–, wherein q = 1 – 3; R8 and R9 are each independently hydrogen, C1-6alkyl, or C1-3halo- alkyl; and Cy is a 3 – 10 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, two or three chained rings, and a spirocyclic ring; R6 is H or C1-6alkyl; or R5 and R6 together with the nitrogen atom to which they are both bonded form a group Q; wherein Q is: a 3 – 10 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, two or three chained rings, and a spirocyclic ring; optionally substituted with one or more R10 groups independently selected from: sulfonyl, cyano, halo, -NH2, -NHR11, -N(R11)2, -R11-NH2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6cycloalkyl, C1-6alkoxy-C1-6alkyl, C1-6haloalkoxy-C1- 6alkyl, cyano-C1-6alkyl, C2-6alkenyl, hydroxy-C1-6alkyl, oxo, C1-6alkylcarbenyl, carboxy- C1-6alkyl, and C1-6 haloalkyl; wherein each R11 is independently selected from C1-6alkyl, C1- 6haloalkyl, and hydroxyl-C1-6alkyl; wherein Q optionally comprises one or more heteroatoms selected from O, S(O)2, and N in addition to the nitrogen atom to which R5 and R6 are both bonded, wherein each additional instance of N is present in Q as N–H, N(R11), or as a tertiary N; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6haloalkyl. [0366] Embodiment II-2. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-1, wherein: wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2;
Figure imgf000145_0001
, wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, -CN, -NH2, -N(Me)2, C1- 3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is -NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1-3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z1 is L1NR5R6, wherein: L1 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L2NR8R9, C1-6alkyl, L2Cy, or -S(=O)2R8, wherein: L2 is selected from: -S(=O)2(CH2)q-, -C(=O)(CH2)q-, -(CH2)q-, -P(=O)3(CH2)q-, –(CH2)–CH=CH–, and –CH=CH–(CH2)–, wherein q = 1 – 3; R8 and R9 are each independently hydrogen, C1-6alkyl, or C1-3halo- alkyl; and Cy is a 3 – 10 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, two or three chained rings, and a spirocyclic ring; R6 is H or C1-6alkyl; or R5 and R6 together with the nitrogen atom to which they are both bonded form a group Q; wherein Q is: a 3 – 10 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, two or three chained rings, and a spirocyclic ring; optionally substituted with one or more R10 groups independently selected from: sulfonyl, cyano, halo, -NH2, -NHR11, -N(R11)2, -R11-NH2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6cycloalkyl, C1-6alkoxy-C1-6alkyl, C2-6alkenyl, hydroxy-C1-6alkyl, oxo, C1-6alkylcarbenyl, carboxy-C1-6alkyl, and C1-6haloalkyl; wherein each R11 is independently selected from C1-6alkyl, C1- 6haloalkyl, and hydroxyl-C1-6alkyl; and wherein Q optionally comprises one or more heteroatoms selected from O and N in addition to the nitrogen atom to which R5 and R6 are both bonded, wherein each additional instance of N is present in Q as N–H, N(R11), or as a tertiary N; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. [0367] Embodiment II-3. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-1 or II-2, wherein X is -NR12-. [0368] Embodiment II-4. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-3, wherein X is - NH-. [0369] Embodiment II-5. A compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-4, wherein: m = 0; n = 1; and p = 1. [0370] Embodiment II-6. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-5, wherein no more than two of R01, R02, R03, R04, and R05 is hydrogen. [0371] Embodiment II-7. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-6, wherein no more than one of R01, R02, R03, R04, and R05 is hydrogen. [0372] Embodiment II-8. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-7, wherein one of R01, R02, R03, R04, and R05 is halogen. [0373] Embodiment II-9. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-8, wherein one of R01, R02, R03, R04, and R05 is C1-3-haloalkyl. [0374] Embodiment II-10. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-9, wherein one of R01, R02, R03, R04, and R05 is amino. [0375] Embodiment II-11. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-10, wherein R1 is:
Figure imgf000147_0001
[0376] Embodiment II-12. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-11, wherein R1 [0377] Embodiment II-13. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-12, wherein R1 is
Figure imgf000148_0001
. [0378] Embodiment II-14. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-13, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is hydrogen, methyl, or C1-3haloalkyl. [0379] Embodiment II-15. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-14, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is hydrogen. [0380] Embodiment II-16. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-14, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is methyl. [0381] Embodiment II-17. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-14, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is C1-3haloalkyl. [0382] Embodiment II-18. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-14, wherein each R4' is hydrogen and R4'' is methyl. [0383] Embodiment II-19. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-14, wherein each R4' is hydrogen and R4'' is -CF3. [0384] Embodiment II-20. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-19, wherein R2 is fluoro. [0385] Embodiment II-21. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-20, wherein R3' and R3'' are both H. [0386] Embodiment II-22. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-21, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a 3-10 membered monocyclic ring optionally substituted with one or more groups selected from sulfonyl, cyano, halo, -N(R11)2, R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, C1- 6haloalkoxy-C1-6alkyl, cyano-C1-6alkyl, hydroxy-C1-6alkyl, oxo, carboxy-C1-6alkyl, and C1- 6haloalkyl. [0387] Embodiment II-23. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-22, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a 3-10 membered monocyclic ring optionally substituted with one or more groups selected from sulfonyl, cyano, halo, -N(R11)2, R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, hydroxy-C1- 6alkyl, oxo, carboxy-C1-6alkyl, and C1-6haloalkyl. [0388] Embodiment II-24. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-22, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring, a pyrrolidine ring, a piperazine ring, or a morpholine ring, optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R11)2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, C1-6haloalkoxy-C1-6alkyl, cyano-C1-6alkyl, hydroxy-C1- 6alkyl, oxo, carboxy-C1-6alkyl, and C1-6haloalkyl. [0389] Embodiment II-25. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiments II-1 to II-24, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring, a pyrrolidine ring, a piperazine ring, or a morpholine ring, optionally substituted with one or more R10 groups independently selected from sulfonyl, cyano, halo, -N(R11)2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C 1-6 alkoxy, C 1-6 alkyl, C 1-6 alkoxy-C 1-6 alkyl, hydroxy-C 1-6 alkyl, oxo, carboxy-C 1-6 alkyl, and C 1- 6haloalkyl. [0390] Embodiment II-26. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-22 or II-24, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring optionally substituted with one or more groups selected from sulfonyl, cyano, halo, -N(R11)2, R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, C1- 6haloalkoxy-C1-6alkyl, cyano-C1-6alkyl, hydroxy-C1-6alkyl, oxo, carboxy-C1-6alkyl, and C1- 6haloalkyl. [0391] Embodiment II-27. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-26, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring optionally substituted with one or more groups selected from sulfonyl, cyano, halo, -N(R11)2, R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6alkoxy-C1-6alkyl, hydroxy-C1-6alkyl, oxo, carboxy-C1-6alkyl, and C1-6haloalkyl. [0392] Embodiment II-28. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-27, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring. [0393] Embodiment II-29. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-25, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a pyrrolidine ring optionally substituted with one or more groups selected from -N(R11)2, hydroxyl, C1-6alkyl, hydroxy-C1-6alkyl, oxo, and carboxy-C1-6alkyl. [0394] Embodiment II-30. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-25 or II-29, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a pyrrolidine ring. [0395] Embodiment II-31. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-25, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a piperazine ring optionally substituted with one or more oxo groups. [0396] Embodiment II-32. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-25, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a morpholine ring optionally substituted with one or more groups selected from hydroxy-C1-6alkyl and oxo. [0397] Embodiment II-33. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-21, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form two chained rings comprising 3-10 atoms optionally substituted with one or more groups selected from halo, C1- 6alkoxy, C1-6alkyl, and hydroxy-C1-6alkyl. [0398] Embodiment II-34. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-33, wherein both rings of the two chained rings are saturated heterocycles, each independently comprising 1-3 ring heteroatoms independently selected from the group consisting of N, O, and S. [0399] Embodiment II-35. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-33, wherein one ring of the two chained rings is azetidine, and the second ring is a saturated heterocycle or heteroaryl, each comprising 1-3 ring heteroatoms independently selected from the group consisting of O and N. [0400] Embodiment II-36. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-21, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a 3-10 membered spirocyclic ring optionally substituted with one or more groups selected from hydroxyl, C1- 6alkyl, and oxo. [0401] Embodiment II-37. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-36, wherein the spirocyclic ring is a 3-10 membered, saturated spirocyclic ring comprising 1-3 annular N atoms. [0402] Embodiment II-38. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-21, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a 3-10 membered fused bicyclic ring optionally substituted with one or more hydroxyl groups. [0403] Embodiment II-39. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-21, wherein, when present, at least one of R10 is selected from -NH2, -NHR11, -N(R11)2, -R11-NH2, -R11-NH- R11, -R11-N(R11)2. [0404] Embodiment II-40. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-39, wherein one R10 is dimethylamino. [0405] Embodiment II-41. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-21, wherein one R10 is methyl. [0406] Embodiment II-42. A compound of formula (II),
or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2;
Figure imgf000152_0001
, wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, -CN, - NH2, -N(Me)2, C1-3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is -NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1- 3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z2 is L0OR5, wherein: L0 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L1J1, or L2Q, wherein: L1 is selected from: –(CH2)q–, –(CH2)C(Ra)(Rb)–, –(CH2)C(H)(Ra)C(H)(Rb)–, –C(H)(Ra)C(H)(Rb)–, –(CH2)Cy– and a bond, wherein q = 1 – 3, Ra and Rb together with the carbon atoms to which each is attached form a ring, and Cy is an optionally substituted 1,2-linked cyclopropyl ring; J1 is selected from: cyano, –C(=O)NR8R9, –C(=O)OR8, -OR8, and - R8; wherein R8 and R9 are independently selected from H, C1-6alkyl, C2-6alkenyl, and phenyl, with the proviso that R8 and R9 are not both H; and wherein Cy, Ra, Rb, R8 and R9 are each optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, alkylcarboxy, C1-6alkoxy, and oxo; and L2 is selected from: –(CHR13)q–, -(CH2)q-C(=O)- and a bond; Q is a 3 – 11 membered ring selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, and a spirocyclic ring; wherein Q is optionally substituted with one or more groups independently selected from: halogen, sulfonyl, cyano, oxo, -NR13C(=O)R14, - C(=O)R14, hydroxyl, -OR14, and -R14; R13 and R14 are independently selected from: hydrogen, C1-6alkyl, and C2-6alkenyl; and wherein R13 and R14 are each optionally and independently substituted by one or more groups selected from: sulfonyl, -S(=O)2(R11), cyano, halogen, oxo, hydroxyl, C1-6alkoxy, and C1-6alkylcarboxy; R11 is selected from C1-6alkyl, C1-6haloalkyl, and hydroxyl-C1-6alkyl; and wherein Q optionally comprises one or more heteroatoms selected from O, S, S(O)2 and N, wherein each instance of N is present in Q as an amide, amide lactam, or wherein Q is a heteroaromatic ring moiety; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. [0407] Embodiment II-43. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-42, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, CN, NH2, N(Me)2, C1-3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1-3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z2 is L0OR5, wherein: L0 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L1J1, or L2Q, wherein: L1 is selected from: –(CH2)q–, –(CH2)C(Ra)(Rb)–, –(CH2)C(H)(Ra)C(H)(Rb)–, –C(H)(Ra)C(H)(Rb)–, –(CH2)Cy– and a bond, wherein q = 1 – 3, Ra and Rb together with the carbon atoms to which each is attached form a ring, and Cy is an optionally substituted 1,2-linked cyclopropyl ring; J1 is selected from: cyano, –N(R8)C(=O)–, –C(=O)NR8R9, – C(=O)OR8, -OR8, and -R8; wherein R8 and R9 are independently selected from H, C1-6alkyl, C2- 6alkenyl, and phenyl, with the proviso that R8 and R9 are not both H; and wherein Cy, Ra, Rb, R8 and R9 are each optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, alkylcarboxy, C1-6alkoxy, and oxo; and L2 is selected from: –(CHR13)q–, -(CH2)q-C(=O)- and a bond; Q is a 3 – 11 membered ring selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, and a spirocyclic ring; wherein Q is optionally substituted with one or more groups independently selected from: halogen, sulfonyl, cyano, oxo, -NR13C(=O)R14, - C(=O)R14, hydroxyl, -OR14, and -R14; R13 and R14 are independently selected from: hydrogen, C1-6alkyl, and C2-6alkenyl; and wherein R13 and R14 are each optionally and independently substituted by one or more groups selected from: sulfonyl, - =S(=O)2(R11), cyano, halogen, oxo, hydroxyl, C1-6alkoxy, and C1-6alkylcarboxy; and wherein Q optionally comprises one or more heteroatoms selected from O, S, S(O)2 and N, wherein each instance of N is present in Q as an amide, amide lactam, or wherein Q is a heteroaromatic ring moiety; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. [0408] Embodiment II-44. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-42 or II-43, wherein X is -NR12-. [0409] Embodiment II-45. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-44, wherein X is -NH-. [0410] Embodiment II-46. A compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-45, wherein: m = 0; n = 1; and p = 1. [0411] Embodiment II-47. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-46, wherein no more than two of R01, R02, R03, R04, and R05 is hydrogen. [0412] Embodiment II-48. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-47, wherein no more than one of R01, R02, R03, R04, and R05 is hydrogen. [0413] Embodiment II-49. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-48, wherein one of R01, R02, R03, R04, and R05 is halogen. [0414] Embodiment II-50. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-49, wherein one of R01, R02, R03, R04, and R05 is C1-3-haloalkyl. [0415] Embodiment II-51. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-50, wherein one of R01, R02, R03, R04, and R05 is amino. [0416] Embodiment II-52. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-51, wherein R1 is: [0417] Embodiment II-53. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-52, wherein R1
Figure imgf000156_0001
[0418] Embodiment II-54. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-53, wherein R1
Figure imgf000157_0001
[0419] Embodiment II-55. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-54, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is hydrogen, methyl, or C1-3haloalkyl. [0420] Embodiment II-56. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-55, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is hydrogen. [0421] Embodiment II-57. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-55, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is methyl. [0422] Embodiment II-58. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-55, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is C1-3haloalkyl. [0423] Embodiment II-59. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of any one of Embodiments II-42 to II-55, wherein each R4' is hydrogen and R4'' is methyl. [0424] Embodiment II-60. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-55, wherein each R4' is hydrogen and R4'' is -CF3. [0425] Embodiment II-61. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-60, wherein R2 is fluoro. [0426] Embodiment II-62. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-61, wherein R3' and R3'' are both H. [0427] Embodiment II-63. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62, wherein L1 is a bond. [0428] Embodiment II-64. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-63, wherein J1 is R8. [0429] Embodiment II-65. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-64, wherein R8 is C1-6alkyl optionally substituted with one or more groups selected from halogen, hydroxy, cyano, and oxo. [0430] Embodiment II-66. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62, wherein L2 is a bond. [0431] Embodiment II-67. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62, wherein L2 is –(CHR13)q–. Embodiment II-68. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62 or II-66 to II-67, wherein Z2 is –O-Q, –O-CH2-Q, –O-CH2CH2-Q, or –O-CH2CH2CH2-Q. [0432] Embodiment II-69. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62 or II-66 to II-68, wherein Z2 is –O-Q. [0433] Embodiment II-70. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62 or II-66 to II-68, wherein Z2 is –O-CH2-Q, –O-CH2CH2-Q, or –O-CH2CH2CH2-Q. [0434] Embodiment II-71. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62, II-66 to 68, or II-70, wherein Z2 is –O-CH2-Q. [0435] Embodiment II-72. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62, II-66 to 68, or II-70, wherein Z2 is –O-CH2-CH2-Q. [0436] Embodiment II-73. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62 or II-66 to II-72, wherein Q is selected from: cyclopropane, cyclobutane, cyclohexane, benzene, pyrrolidine, piperidine, morpholine, pyridine, pyridone, pyridazine, pyrazine, pyrimidine, 1,4- dioxane, 1H-pyrazole, isoindoline-1,3-dione, 2-oxabicyclo[2.1.1]hexane, tetrahydrofuran, oxetane, tetrahydropyran, thietane, 2,3-dihydrobenzofuran, iso-oxazole, bicyclo[1.1.1]pentane, 6,7-dihydro-5H-pyrrolo[1,2-a]imidazole, imidazole, tetrahydro-2H-thiopyran, 1,2,4-triazole, 9- oxa-2-azaspiro[5.5]undecane, azetidine, 3-oxabicyclo[3.1.0]hexane, tetrahydrothiophene, and oxazolidine, optionally substituted with one or more groups selected from R14, sulfonyl, hydroxyl, halogen, cyano, oxo, C(=O)R14, and NR13C(=O)R14. [0437] Embodiment II-74. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62 or II-66 to II-73, wherein R14 is C1-6alkyl optionally substituted by one or more groups selected from hydroxyl, halogen, and oxo. [0438] Embodiment II-75. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62 or II-66 to II-73, wherein R13 is hydrogen and R14 is C1-6alkyl. [0439] Embodiment II-76. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62 or II-66 to II-73, wherein Q is selected from: cyclopropane, cyclobutane, cyclohexane, benzene, pyrollidine, piperidine, morpholine, pyridine, pyridone, pyridazine, pyrazine, pyrimidine, 1,4- dioxane, 1H-pyrazole, isoindoline-1,3-dione, 2-oxabicyclo[2.1.1]hexane, tetrahydrofuran, oxetane, tetrahydropyran, thietane, 2,3-dihydrobenzofuran, iso-oxazole, bicyclo[1.1.1]pentane, 6,7-dihydro-5H-pyrrolo[1,2-a]imidazole, imidazole, tetrahydro-2H-thiopyran, 1,2,4-triazole, 9- oxa-2-azaspiro[5.5]undecane, azetidine, 3-oxabicyclo[3.1.0]hexane, tetrahydrothiophene, and oxazolidine. [0440] Embodiment II-77. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-42 to II-62, II-66 to II- 73, or II-76, wherein Q is selected from: cyclopropane, cyclobutane, cyclohexane, benzene, pyrrolidine, piperidine, morpholine, pyridine, pyridazine, pyrazine, pyrimidine, 1,4-dioxane, 1H-pyrazole, isoindoline-1,3-dione, 2-oxabicyclo[2.1.1]hexane, tetrahydrofuran, oxetane, tetrahydropyran, thietane, 2,3-dihydrobenzofuran, iso-oxazole, bicyclo[1.1.1]pentane, 6,7- dihydro-5H-pyrrolo[1,2-a]imidazole, imidazole, tetrahydro-2H-thiopyran, 1,2,4-triazole, and 9- oxa-2-azaspiro[5.5]undecane. [0441] Embodiment II-78. A compound of formula (III), or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2;
Figure imgf000160_0001
wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, -CN, - NH2, -N(Me)2, C1-3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is -NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1-3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z3 is L1OR5, wherein: L1 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L2J, or L2QJ, wherein: L2 is selected from: –(CH2)q–, –(CH2)q–C(=O)–, and a bond, wherein q = 1 – 3; J is C1-6alkyl-NR8R9 or -NR8R9; wherein R8 and R9 are independently selected from H, C1-6alkyl, and C2- 6alkenyl; wherein J is optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, and C1-6alkoxy; and, when not H, each of R8 and R9 is optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, C1- 6alkylcarboxy, C1-6alkoxy, C1-6cycloalkyl, 5-6 membered heterocyclyl, and oxo; Q is a 3 – 8 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, and a spirocyclic ring; wherein Q is optionally substituted with one or more groups independently selected from: halogen, cyano, oxo, hydroxyl, C1-6alkoxy, and C1- 6haloalkyl; wherein Q optionally comprises one or more heteroatoms selected from O, S, and N; wherein L2 and J both bond to the same ring atom of Q; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. [0442] Embodiment II-79. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-78, wherein X is -NR12-. [0443] Embodiment II-80. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of Embodiment II-78 or II-79, wherein X is -NH-. [0444] Embodiment II-81. A compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-80, wherein: m = 0; n = 1; and p = 1. [0445] Embodiment II-82. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-81, wherein no more than two of R01, R02, R03, R04, and R05 is hydrogen. [0446] Embodiment II-83. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-82, wherein no more than one of R01, R02, R03, R04, and R05 is hydrogen. [0447] Embodiment II-84. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-83, wherein one of R01, R02, R03, R04, and R05 is halogen. [0448] Embodiment II-85. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-84, wherein one of R01, R02, R03, R04, and R05 is C1-3-haloalkyl. [0449] Embodiment II-86. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-85, wherein one of R01, R02, R03, R04, and R05 is amino. [0450] Embodiment II-87. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-86, wherein R1 is:
Figure imgf000162_0001
[0451] Embodiment II-88. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-87, wherein R1 is:
Figure imgf000163_0001
[0452] Embodiment II-89. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-88, wherein R1
Figure imgf000163_0002
[0453] Embodiment II-90. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-89, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is hydrogen, methyl, or C1-3haloalkyl. [0454] Embodiment II-91. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-90, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is hydrogen. [0455] Embodiment II-92. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-90, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is methyl. [0456] Embodiment II-93. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-90, wherein X is -NH-; m = 0; n = 1; p = 1; R2 is halogen; R3' and R3'' are independently hydrogen; R4' is hydrogen; and R4'' is C1-3haloalkyl. [0457] Embodiment II-94. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of any one of Embodiments II-78 to II-90, wherein each R4' is hydrogen and R4'' is methyl. [0458] Embodiment II-95. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-90, wherein each R4' is hydrogen and R4'' is -CF3. [0459] Embodiment II-96. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-95, wherein R2 is fluoro. [0460] Embodiment II-97. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-96, wherein R3' and R3'' are both H. [0461] Embodiment II-98. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-97, wherein L2 is –(CH2)q–. [0462] Embodiment II-99. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-98, wherein Q is cyclopropyl optionally substituted with one or more halogens. [0463] Embodiment II-100. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-99, wherein Q is cyclopropyl. [0464] Embodiment II-101. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-100, wherein J is C1-6alkyl-NR8R9 optionally substituted with one or more groups independently selected from halogen and hydroxy. [0465] Embodiment II-102. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-101, wherein J is C1-6alkyl-NR8R9. [0466] Embodiment II-103. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-100, wherein J is NR8R9. [0467] Embodiment II-104. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-103, wherein each of R8 and R9 are independently hydrogen or C1-6alkyl optionally substituted with oxo, halogen, C1-6alkoxy, and 5-6 membered heterocyclyl. [0468] Embodiment II-105. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-78 to II-104, wherein each of R8 and R9 are independently hydrogen or C1-6alkyl. [0469] Embodiment II-106. A compound selected from the group consisting of compounds 1-262 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0470] Embodiment II-107. A compound selected from the group consisting of compounds 1-182 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0471] Embodiment II-108. A compound selected from the group consisting of compounds 183- 262 as set forth in Table 1, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0472] Embodiment II-109. A pharmaceutical composition comprising a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of Embodiments II-1 to II-108, and one or more pharmaceutically acceptable excipients. [0473] Embodiment II-110. A method of treating cancer, the method comprising administering an effective amount of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of any one of Embodiments II-1 to II-108, or a pharmaceutical composition of Embodiment II-109. [0474] Embodiment II-111. The method of Embodiment II-110, wherein the cancer is characterized as comprising a KRas mutation. [0475] Embodiment II-112. The method of Embodiment II-111, wherein the KRas mutation corresponds to a KRasG12D mutation. [0476] Embodiment II-113. The method of Embodiment II-110 to II-112, further comprising testing a sample from the patient before administration for the absence or presence of a KRasG12D mutation. [0477] Embodiment II-114. The method of Embodiment II-113, wherein the compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof or pharmaceutical composition is administered to the patient after the patient sample shows the presence of a KRasG12D mutation. [0478] Embodiment II-115. The method of any one of Embodiments II-110 to II-114, wherein the cancer is tissue agnostic. [0479] Embodiment II-116. The method of any one of Embodiments II-110 to II-114, wherein the cancer is pancreatic cancer, lung cancer, or colorectal cancer. [0480] Embodiment II-117. The method of Embodiment II-116, wherein the lung cancer is lung adenocarcinoma, NSCLC, or SCLC. [0481] Embodiment II-118. The method of Embodiment II-116, wherein the cancer is pancreatic cancer. [0482] Embodiment II-119. The method of Embodiment II-116, wherein the cancer is colorectal cancer. [0483] Embodiment II-120. The method of any one of Embodiments II-110 to II-119, further comprising administering at least one additional therapeutic agent. [0484] Embodiment II-121. The method of Embodiment II-120, wherein the additional therapeutic agent comprises an epidermal growth factor receptor (EGFR) inhibitor, phosphatidylinositol kinase (PI3K) inhibitor, insulin-like growth factor receptor (IGF1R) inhibitor, a Janus kinase (JAK) inhibitor, a Met kinase inhibitor, a SRC family kinase inhibitor, a mitogen-activated protein kinase (MEK) inhibitor, an extracellular-signal-regulated kinase (ERK) inhibitor, a topoisomerase inhibitor, a taxane, an anti-metabolite agent, or an alkylating agent. [0485] Embodiment II-122. A compound according to any one of Embodiments II-1 to II- 108, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use as a therapeutically active substance. [0486] Embodiment II-123. Use of a compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for the therapeutic treatment of a cancer comprising a KRasG12D mutation. [0487] Embodiment II-124. Use of a compound according to any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically salt thereof, in the manufacture of a medicament for inhibiting tumor metastasis. [0488] Embodiment II-125. Use of a compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for the preparation of a medicament for the therapeutic treatment of a cancer comprising a KRasG12D mutation. [0489] Embodiment II-126. A compound according to any one of Embodiments II-1 to II- 108, or stereoisomer, atropisomer, tautomer, or pharmaceutically salt thereof, for the therapeutic and/or prophylactic treatment of a cancer comprising a KRasG12D mutation. [0490] Embodiment II-127. A method for regulating activity of a KRas mutant protein, the method comprising reacting the mutant protein with a compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0491] Embodiment II-128. A method for inhibiting proliferation of a cell population, the method comprising contacting the cell population with the compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. [0492] Embodiment II-129. The method of Embodiment II-128, wherein the inhibition of proliferation is measured as a decrease in cell viability of the cell population. [0493] Embodiment II-130. A method for inhibiting tumor metastasis comprising administering to an individual in need thereof a therapeutically effective amount of the compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof to a subject in need thereof. [0494] Embodiment II-131. A compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use in regulating activity of a KRas mutant protein. [0495] Embodiment II-132. A compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use in inhibiting proliferation of a cell population. [0496] Embodiment II-133. The compound, stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt for use of Embodiment II-132, wherein the inhibition of proliferation is measured as a decrease in cell viability of the cell population. [0497] Embodiment II-134. A compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use in inhibiting tumor metastasis. [0498] Embodiment II-135. Use of a compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for regulating activity of a KRas mutant protein. [0499] Embodiment II-136. Use of a compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for inhibiting proliferation of a cell population. [0500] Embodiment II-137. The use of Embodiment II-136, wherein the inhibition of proliferation is measured as a decrease in cell viability of the cell population. [0501] Embodiment II-138. Use of a compound of any one of Embodiments II-1 to II-108, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for inhibiting tumor metastasis. [0502] Embodiments [0503] Provided below are exemplary embodiments of the invention. EXAMPLES [0504] The following Examples are presented by way of illustration, not limitation. Intermediates [0505] Intermediate 1: 5,7-Dichloro-8-fluoro-2-(methylthio) pyrido[4,3-d] pyrimidin-4(3H)-one
[0506] Step 1: 2,6-Dichloro-3-fluoropyridin-4-amine
Figure imgf000168_0001
[0507] Under nitrogen, a solution of 2,6-dichloropyridin-4-amine (9.01 g, 55.3 mmol) and SelectFlour (23.6 g, 66.6 mmol) in DMF (90 mL) and acetonitrile (90 mL) was stirred for 30 min at 80 °C. The mixture was concentrated under vacuum. The crude product was purified by reverse phase chromatography (gradient: 0–40 % acetonitrile in water (0.1% formic acid)) to afford the title compound (4.62 g, 46% yield) as a light brown solid. LC-MS: (ESI, m/z): [M+H]+ = 181. 1H NMR (300 MHz, DMSO-d6, ppm) δ 6.99 (s, 2H), 6.70 (d, J = 5.4 Hz, 1H). [0508] Step 2: tert-Butyl N-tert-butoxycarbonyl-N-(2,6-dichloro-3-fluoro-4-pyridyl) carbamate
Figure imgf000168_0002
[0509] Under nitrogen, to a solution of 2,6-dichloro-3-fluoropyridin-4-amine (4.82 g, 26.6 mmol) in THF (100mL) was added NaHMDS (53.1 mL, 2M in THF) at 0°C. The resulting solution was stirred for 30 min at 0°C. Then Boc2O (29.0 g, 133 mmol) in THF (450 mL) was added at 0°C, and the mixture was stirred at room temperature overnight. The reaction was quenched with aqueous NH4Cl. Most of the THF was removed under vacuum and the resulting solution was extracted with EtOAc. The combined organic layers were concentrated under vacuum to afford the title compound (9.11 g, crude) as a white solid which was used without further purification. LC-MS: (ESI, m/z): [M+H]+ = 381. 1H NMR (300 MHz, DMSO-d6, ppm) δ 6.13 (s, 1H), 1.42 (s, 9H), 1.38 (d, J = 2.4 Hz, 9H). [0510] tert-Butyl 4-((tert-butoxycarbonyl)amino)-2,6-dichloro-5-fluoronicotinate
Figure imgf000168_0003
[0511] Under nitrogen, to a solution of tert-butyl N-tert-butoxycarbonyl-N-(2,6-dichloro-3-fluoro- 4-pyridyl) carbamate (9.11 g, 23.9 mmol) in THF (180 mL) was added LDA (41.9 mL, 1M in THF) at –78 °C. The resulting solution was stirred for 0.5 h at –78 °C. The reaction was quenched with aq. NH4Cl and extracted with EtOAc (300 mL × 2). The organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0-10%) to afford the title compound (4.18 g, 46 % yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ =
Figure imgf000169_0001
(300 MHz, DMSO-d6, ppm) δ 10.07 (s, 1H), 1.54 (s, 9H), 1.45 (s, 9H). [0512] Step 4: 4-Amino-2,6-dichloro-5-fluoronicotinic acid
Figure imgf000169_0002
[0513] A solution of tert-butyl 4-((tert-butoxycarbonyl) amino)-2,6-dichloro-5-fluoronicotinate (4.18 g, 11.0 mmol) in TFA (15mL) and DCM (15mL) was stirred at 40 °C for 3 hours. The solvent was concentrated under vacuum to afford the title compound (2.86 g, crude) as a brown solid which was used without further purification. LC-MS: (ESI, m/z): [M+H]+ = 225. [0514] Step 5: 5,7-Dichloro-8-fluoro-2-thioxo-2,3-dihydropyrido[4,3-d] pyrimidin-4(1H)-one
Figure imgf000169_0003
[0515] To a solution of 4-amino-2,6-dichloro-5-fluoronicotinic acid (2.01 g, 8.92 mmol) in MeCN (60 mL)/pyridine (20 mL) was added ethoxycarbonyl isothiocyanate (4.20 mL, 35.6 mmol). The resulting solution was stirred at room temperature for 2 hours and concentrated under vacuum. The residue was purified by reverse phase chromatography (gradient: 0–40% acetonitrile in water (0.1% formic acid)) to afford the title compound 1.58 g (67% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 264.1H NMR (400 MHz, DMSO- d6, ppm) δ 13.30 (s, 1H), 12.86 (s, 1H). [0516] Step 6: 5,7-Dichloro-8-fluoro-2-(methylthio) pyrido [4,3-d] pyrimidin-4(3H)-one
Figure imgf000169_0004
[0517] Under nitrogen, to a solution of 5,7-dichloro-8-fluoro-2-thioxo-2,3-dihydropyrido[4,3-d] pyrimidin-4(1H)-one (1.58 g, 5.93 mmol) in DMF (20 mL) was added CH3ONa (320 mg, 5.93 mmol) at 0oC. The resulting solution was stirred for 10 min at room temperature. Then CH3I (842 mg, 5.93 mmol) was added slowly at room temperature. The reaction mixture was stirred overnight at room temperature and subsequently added slowly with stirring to cold water. The solid was collected by filtration and dried in an oven to afford the title compound 2.07 g (crude) as a yellow solid which was used for next step without further purification. LC-MS: (ESI, m/z): [M+H]+ = 280. 1H NMR (300 MHz, DMSO- d6, ppm) δ 13.35 (br, 1H), 2.61 (s, 3H). [0518] Intermediate 2: tert-Butyl (5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000170_0001
[0519] Step 1: tert-Butyl (1R,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane-3-carboxylate
Figure imgf000170_0002
[0520] To a solution of tert-butyl 3,8-diazabicyclo[3.2.1]octane-3-carboxylate (50.0 g, 236 mmol) in DMF (800 mL) was added K2CO3 (65.1 g, 472 mmol) and BnBr (60.1g, 353.53 mmol). The mixture was stirred at rt for 2 hours. Then the reaction mixture was diluted with water and extracted with EtOAc. The combined organic phases were washed with water (500 mL×3), dried over Na2SO4 and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0~10%) to afford the title compound (69 g, 96.9% yield) as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 303. [0521] Step 2: 3-(tert-Butyl) 2-methyl (1R,2S,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane-2,3- dicarboxylate and 3-(tert-Butyl) 2-methyl (1R,2R,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane-2,3- dicarboxylate
Figure imgf000170_0003
[0522] Under N2, to a solution of tert-butyl 8-benzyl-3,8-diazabicyclo[3.2.1]octane-3-carboxylate (23.0 g, 76.06 mmol) and TMEDA (17.7 g, 152.59 mmol) in diethyl ether (500 mL) was added dropwise s-BuLi (117 mL, 1.3 M in hexane) at –78 °C and stirred at –78 °C for 1.5 hours. Then methyl chloroformate (17.9 g, 189 mmol) in 40 mL Et2O was added dropwise at –78 °C. The reaction was warmed to room temperature gradually and stirred additional 16 hours. The reaction was quenched with saturated NaHCO3 (aq), diluted with water and extracted with EtOAc. The combined organic phases were dried over Na2SO4 and concentrated under vacuum. The crude product was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0~10%) to afford 16 g of racemic mixtures (mixture of cis) as yellow oil. The mixture was separated by chiral-SFC (Column: Lux® 5µm Cellulose-2, 5×25cm, 5um; Mobile Phase A: CO2, Mobile Phase B: MeOH (0.1% 2M NH3-MeOH); Flow rate:180 mL/min; Gradient:18% B; 220 nm; RT1:5.07; RT2: 5.57) to afford 5.9 g the faster peak and 5.6 g of the slower peak as yellow oil. LC- MS: (ESI, m/z): [M+H]+ = 361. [0523] Step 3: tert-Butyl (1R,2S,5S)-8-benzyl-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane-3- carboxylate
Figure imgf000171_0001
[0524] Under nitrogen, to a solution of 3-(tert-butyl) 2-methyl (1R,2S,5S)-8-benzyl-3,8- diazabicyclo[3.2.1]octane-2,3-dicarboxylate (20.0g, 55.5mmol, faster peak of previous operation) in THF (300 mL) was added LiAlH4 (4.20g, 111mmol) at 0°C. The resulting solution was stirred for 30 mins at 0°C and quenched with Na2SO4·10H2O. The solid was filtered off and the filtrate was concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0~20%) to afford the title compound (14.3 g, 77.5% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 333. [0525] Step 4: (6S,9R,9aS)-10-Benzylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3-one
Figure imgf000171_0002
[0526] Under nitrogen, to a solution of tert-Butyl (1R,2S,5S)-8-benzyl-2-(hydroxymethyl)-3,8- diazabicyclo[3.2.1]octane-3-carboxylate (5.1 g, 15.34 mmol) in THF (100 mL) was added NaH (1.35 g, 33.75 mmol, 60% in mineral oil) at 0°C. The resulting solution was stirred for 3 hours at room temperature, quenched with NH4Cl (aq) and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0~40%) to afford the title compound (3.5 g, 88.3% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 259. [0527] Step 5: (6S,9R,9aS)-Hexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3-one
Figure imgf000172_0001
[0528] A mixture of (6S,9R,9aS)-10-Benzylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3- one (10.0 g, 38.7 mmol) and Pd/C (3.0 g, 10% dry ) in methyl alcohol (200 mL) was stirred under an atmosphere of hydrogen at room temperature for 2 hours at room temperature. The catalyst was filtered off. The filtrate was concentrated under reduced pressure to afford 6g crude product which was used for next step without further purification. LC-MS: (ESI, m/z): [M+H]+ = 169. [0529] Step 6: tert-Butyl (6S,9R,9aS)-3-oxohexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepine- 10-carboxylate
Figure imgf000172_0002
[0530] A solution of (6S,9R,9aS)-Hexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3-one (6.00 g, 35.7 mmol), (Boc)2O (12.6g, 57.8mmol) and DIPEA (10.0 g, 77.5 mmol) in dichloromethane (100 mL) was stirred at rt for 2 hours. The reaction mixture was washed with saturated sodium chloride solution. The organic phase was dried over anhydrous Na2SO4 and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0~40%) to afford the title compound 7.50 g (72% yield over two steps) as white solid. LC-MS: (ESI, m/z): [M+H]+ = 269. [0531] Step 7: tert-Butyl (1R,2S,5S)-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000172_0003
[0532] A solution of tert-Butyl (6S,9R,9aS)-3-oxohexahydro-1H,3H-6,9-epiminooxazolo[3,4- a]azepine-10-carboxylate (7.50 g, 28.0 mmol) and NaOH (16.8 g, 420 mmol) in ethanol (200 mL) and water (70 mL) was stirred at 80°C for 16 hours. A majority of EtOH was stripped off under reduced pressure. The residual solution was adjusted to pH=8 with aqueous HCl (1M) and extracted with EtOAc. The combined organic layers were dried over Na2SO4 and concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel eluting with DCM/MeOH (5/1) to afford the title compound (5 g, 73.8% yield) as an off white solid. LC-MS: (ESI, m/z): [M+H]+ = 243.1H NMR (400 MHz, DMSO-d6, ppm) δ 4.72 - 4.57 (m, 1H), 4.02 - 3.90 (m, 2H), 3.25 - 3.15 (m, 2H), 2.82 - 2.68 (m, 2H), 2.64 - 2.53 (m, 1H), 1.85 - 1.61 (m, 3H), 1.61 - 1.47 (m, 1H), 1.41 (s, 9H). [0533] Step 8: tert -Butyl (1S,2S,5R)-2-(((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)methyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000173_0001
[0534] Under nitrogen, to a solution of tert -butyl (1S,2S,5R)-2-(hydroxymethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (289 mg, 1.19 mmol) in THF (20 mL) was added NaH (191 mg, 4.78 mmol, 60% in mineral oil) at 0oC. The resulting solution was stirred for 0.5 h at room temperature. Then 5,7-dichloro-8-fluoro-2-(methylthio)pyrido[4,3-d]pyrimidin-4(3H)-one (803 mg, 1.43 mmol, intermediate 1) was added at 0oC and stirred for 1 hour at room temperature. The reaction was quenched aqueous NH4Cl, diluted with water and extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to afford the title compound (1.05 g crude) as a white solid which was used for next step without further purification. LC-MS: (ESI, m/z): [M+H]+ = 486. [0535] Step 9: tert -Butyl (5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000173_0002
[0536] To a solution of tert -butyl (1S,2S,5R)-2-(((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)methyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1.05 g, 2.15 mmol) in DCM (10 mL) was added DIPEA (4.16 g, 32.3 mmol) and BOPCl (2.20 g, 8.61 mmol). The resulting solution was stirred at room temperature for 2 hours, diluted with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0%-40%) to afford the title compound (381 mg, 68% yield over two steps) as a light yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 469 [0537] Intermediate 3: tert-Butyl (1R,2S,5S)-2-((S)-1-hydroxyethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
[0538] Step 1: tert-Butyl 8-benzyl-3,8-diazabicyclo [3.2.1] octane-3-carboxylate
Figure imgf000174_0001
Under nitrogen, to a solution of tert-butyl 3,8-diazabicyclo [3.2.1] octane-3-carboxylate (5.00 g, 23.5 mmol) in N, N-dimethylformamide (50 mL) were added K2CO3 (6.51 g, 47.1 mmol) and (bromomethyl)benzene (6.01 g, 35.1 mmol) at 0 °C, and the mixture was warmed to room temperature. After 1 h, the reaction mixture was poured into ice water, and the resulting mixture was extracted with EtOAc. The combined organic layers were dried over anhydrous Na2SO4 and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-30% EtOAc/ petroleum ether) to yield 7 g (98% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 303. [0539] Step 2: (1S,6S,9R,9aS)-10-Benzyl-1-methylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a] azepin-3-one
Figure imgf000174_0002
[0540] Under nitrogen, to a solution of tert-butyl 8-benzyl-3,8-diazabicyclo [3.2.1] octane-3- carboxylate (7.0 g, 23.1mmol) and TMEDA (5.38 g, 46.3mmol) in diethyl ether (70 mL) was added s-BuLi (35.6 mL, 46.3 mmol, 1.3 M in hexane) dropwise at –78 °C. After 1.5 h, acetaldehyde (2.55 g, 57.8 mmol) was added at –78 °C. The reaction was warmed to room temperature and stirred overnight. The mixture was quenched with saturated aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous Na2SO4 and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (0-50% EtOAc in petroleum ether) to yield 5.1 g mixture of 4 diastereoisomers. The mixture was separated by Prep- SFC (Column: CHIRALPAK IH, 3*25 cm, 5 μm; Mobile Phase A: CO2, Mobile Phase B: IPA(0.5% 2M NH3-MeOH); Flow rate: 70 mL/min; Gradient: isocratic 35% B; Column Temperature( ℃): 35; Back Pressure(bar): 100; Wavelength: 220 nm; RT1(min): 6.31; RT2(min): 8.33; Sample Solvent: MeOH-----Preparative; Injection Volume: 1.9 mL; Number Of Runs: 50) to yield compound a (1.39 g, 22% yield) (the first peak) and compound d (1.47 g, 23% yield) (the third peak) and mixture of compound b and c (the second peak). The mixture of compound b and c was re-separated by Prep- SFC (Column: CHIRALPAK IH, 5*25 cm, 5 μm; Mobile Phase A: CO2, Mobile Phase B: IPA(0.5% 2M NH3-MeOH); Flow rate: 200 mL/min; Gradient: isocratic 50% B; Column Temperature( ℃): 35; Back Pressure(bar): 100; Wavelength: 220 nm; RT1(min): 5.73; RT2(min): 8.44; Sample Solvent: MeOH-----Preparative; Injection Volume: 10 mL; Number Of Runs: 6) to yield compound b (0.500 g, 8% yield) (the faster peak) and compound c (0.430 g, 7% yield) (the slower peak) as yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 273. Compound a is the desired isomer. [0541] Step 3: (1S,6S,9R,9aS)-1-Methylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3-one
Figure imgf000175_0001
[0542] A solution of (1S,6S,9R,9aS)-10-Benzyl-1-methylhexahydro-1H,3H-6,9- epiminooxazolo[3,4-a] azepin-3-one (1.00 g, 3.67 mmol) (compound A from the previous step) and Pd/C (500 mg, 10%) in methyl alcohol (15 mL) was stirred for 1 h at room temperature under an atmosphere of hydrogen gas. The catalyst was filtered and the filtrate was concentrated under vacuum to yield 658 mg (crude) of the title compound as a yellow oil which was used without further purification. LC-MS: (ESI, m/z): [M+H]+ = 183. [0543] Step 4: tert-Butyl (1S,6S,9R,9aS)-1-methyl-3-oxohexahydro-1H,3H-6,9- epiminooxazolo[3,4-a] azepine-10-carboxylate
Figure imgf000175_0002
[0544] A solution of (1S,6S,9R,9aS)-1-methylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a] azepin-3-one (658 mg, 3.61 mmol), (Boc)2O (1.18 g, 5.41 mmol) and DIPEA (1.4 g, 10.8 mmol) in dichloromethane (10 mL) was stirred for 30 min at room temperature. The reaction mixture was quenched with water and extracted with DCM. The combined organic layers were dried over anhydrous Na2SO4 and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-100% EtOAc / petroleum ether) to yield the title compound (920 mg, 89% yield over two steps) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 283. [0545] Step 5: tert-Butyl (1R,2S,5S)-2-((S)-1-hydroxyethyl)-3,8-diazabicyclo [3.2.1] octane-8- carboxylate
Figure imgf000176_0001
[0546] A solution of tert-butyl (1S,6S,9R,9aS)-1-methyl-3-oxohexahydro-1H,3H-6,9- epiminooxazolo[3,4-a] azepine-10-carboxylate (0.90 g, 3.2 mmol) and NaOH (1.28 g, 32.0 mmol) in ethanol (12 mL) and water (4 mL) was heated at 80 °C. After 1 h, the reaction solution was cooled to room temperature, diluted with water, and extracted with DCM. The combined organic layers were dried over anhydrous Na2SO4 and concentrated under vacuum to yield 815 mg (crude) of an oil that was used without further purification. LC-MS: (ESI, m/z): [M+H]+ = 257.1H NMR (300 MHz, DMSO-d6) δ 4.54 (s, 1H), 3.94 (d, J = 5.1 Hz, 1H), 3.82 (s, 1H), 2.73 (d, J = 11.3 Hz, 1H), 2.60 (d, J = 11.5 Hz, 1H), 2.41 (d, J = 8.1 Hz, 1H), 2.15 (s, 1H), 179 – 1.67 (m, 3H), 1.56 (s, 1H), 1.40 (s, 9H), 1.04 (d, J = 6.3 Hz, 3H). [0547] Intermediate 4: (5-(Bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl) boronic acid
Figure imgf000176_0002
[0548] Step 1: 5-Bromo-2-fluoro-N, N-bis(4-methoxybenzyl)-3-methylaniline
Figure imgf000176_0003
[0549] Under nitrogen, to a solution of 5-bromo-2-fluoro-3-methylaniline (4.81 g, 23.5 mmol) in DMF (40 mL) was added NaH (2.82 g, 70.5 mmol, 60% in mineral oil) at 0 °C. The resulting solution was stirred for 20 min at room temperature before the addition of PMBCl (7.42 g, 47.3 mmol). After 1 h, the reaction was quenched with saturated aqueous NH4Cl solution, diluted with H2O (20 mL), and extracted with EtOAc (2 ×80 mL). The combined organic extracts were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was slurried with ethanol and filtered to yield 6.50 g (crude) of the title compound as an off-white solid which was used without further purification. LC-MS: (ESI, m/z): [M+H]+ = 444 [0550] Step 2: 5-Bromo-2-fluoro-4-iodo-N, N-bis(4-methoxybenzyl)-3-methylaniline
Figure imgf000177_0001
[0551] Under nitrogen, to a solution of 5-bromo-2-fluoro-N, N-bis(4-methoxybenzyl)-3- methylaniline (5.70 g, 12.8 mmol) in acetic acid (50 mL) was added NIS (3.20 g, 14.2 mmol) at room temperature. After 20 min, the reaction was quenched with saturated aqueous Na2S2O3 solution and diluted with EtOAc (150 mL). The collected organic layer was washed with water (4 × 100 mL), dried over anhydrous sodium sulfate, and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0-30%) to yield 7.21 g (98.5% yield) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 570. [0552] Step 3: 5-Bromo-2-fluoro-N, N-bis(4-methoxybenzyl)-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000177_0002
[0553] Under nitrogen, to a solution of 5-bromo-2-fluoro-4-iodo-N, N-bis(4-methoxybenzyl)-3- methylaniline (7.08 g, 12.4 mmol) in DMF (80 mL) was added methyl 2,2-difluoro-2- (fluorosulfonyl) acetate (15.2 mL, 119 mmol) and CuI (23.4 g, 123 mmol) at room temperature. The reaction mixture was warmed to 75oC. After 6 h, the reaction mixture was cooled to room temperature diluted with H2O (40 mL), and extracted with EtOAc (2 × 70 mL). The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/ petroleum ether (0- 50%) to yield 3.47 g (55% yield) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 512. [0554] Step 4: (5-(Bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl) boronic acid
Figure imgf000177_0003
[0555] Under nitrogen, to a solution of 5-bromo-2-fluoro-N, N-bis(4-methoxybenzyl)-3-methyl-4- (trifluoromethyl) aniline (2.40 g, 4.68 mmol) and triisopropyl borate (1.60 mL, 6.91mmol) in THF (35 mL) was added n-BuLi (2.2 mL, 2.5 M in THF) at –78 °C. The resulting solution was stirred for 1h at –78 °C. The reaction was quenched with saturated aqueous NH4Cl solution, diluted with H2O (20 mL), and extracted with EtOAc (2 × 50 mL). The combined organic extracts were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc (0.1% TEA)/petroleum ether (10% DCM) (0-30%) to yield 1.22 g (55% yield) of the title compound as a yellow syrup. LC-MS: (ESI, m/z): [M+H]+ = 478. [0556] Intermediate 5: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000178_0001
[0557] Step 1: tert-Butyl (1S,2S,5R)-2-((S)-1-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d] pyrimidin-5-yl) oxy) ethyl)-3,8-diazabicyclo [3.2.1]octane-8-carboxylate
Figure imgf000178_0002
[0558] Under nitrogen, to a solution of tert-butyl (1S,2S,5R)-2-((S)-1-hydroxyethyl)-3,8- diazabicyclo [3.2.1] octane-8-carboxylate (769 mg, 3.00 mmol, intermediate 3) in THF (10 mL) was added NaH (480 mg, 12.0 mmol, 60% in mineral oil) at 0 °C. The resulting solution was stirred for 0.5 h at room temperature before recooling to 0 °C. 5,7-Dichloro-8-fluoro-2-(methylthio)pyrido[4,3- d] pyrimidin-4(3H)-one (1.01 g, 3.60 mmol, intermediate 1) was added, and the reaction was warmed to room temperature. After 2 h, the reaction was quenched with saturated aqueous NH4Cl solution, diluted with water and extracted with DCM. The combined organic extracts were dried over anhydrous sodium sulfate and concentrated under vacuum to afford the title compound (1.61 g crude) as a white solid, which was used without further purification. LC-MS: (ESI, m/z): [M+H]+ = 500. [0559] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12-(methylthio)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate
Figure imgf000178_0003
[0560] To a solution of tert-butyl (1S,2S,5R)-2-((S)-1-((7-chloro-8-fluoro-2-(methylthio)-4-oxo- 3,4-dihydropyrido[4,3-d] pyrimidin-5-yl) oxy) ethyl)-3,8-diazabicyclo [3.2.1] octane-8-carboxylate (1.61g, 3.21mmol) in DCM (15 mL) were added DIPEA (6.22 g, 48.2 mmol) and BOPCl (3.28 g, 12.9 mmol) at room temperature. After 2 h, the reaction was concentrated under vacuum. The resulting residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0%-55%) to afford the title compound (1.21 g, 78% yield) as a light yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 482. [0561] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate
Figure imgf000179_0001
[0562] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- (methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8- ab] heptalene-14-carboxylate (701 mg, 1.45 mmol) and (5-(bis(4-methoxybenzyl) amino)-4-fluoro- 3-methyl-2-(trifluoromethyl) phenyl) boronic acid (1.73 g, 3.63 mmol, intermediate 4) in THF (9 mL) were added cataCXium A Pd G3 (317 mg, 0.440 mmol) and K3PO4 (1.8 mL, 1.5 M in H2O) at room temperature. The resulting solution was stirred for 3 h at 60℃. The reaction mixture was cooled to room temperature and concentrated under vacuum. The residue was purified by reverse phase flash chromatography on pre-packed C18 column (gradient: 0-100% CH3CN in water (0.05% NH4HCO3)) to yield 941 mg (74% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 879. [0563] Step 4: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000179_0002
[0564] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylthio)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate (910 mg, 1.04 mmol) in DCM (10 mL) was added m-CPBA (537 mg, 3.11 mmol) at 0 ℃. The resulting solution was warmed to room temperature for 2 h. The solution was diluted with saturated aqueous NaHCO3 solution and extracted with DCM. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-51% EtOAc in petroleum ether) to afford 378 mg (40% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 911. [0565] Intermediate 6: tert-Butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- (methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000180_0001
[0566] To a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12-(methylthio)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate (1.21 g, 2.5 mmol, intermediate 5/step 2) in EtOAc (20 mL) was added mCPBA (1.30 g, 7.52 mmol) at 0oC. The reaction mixture was stirred at room temperature for 1 hour, diluted with NaHCO3 and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0-60%) to afford the title compound (931 mg, 72% yield) as white solid. LC-MS: (ESI, m/z): [M+H]+ = 514. 1H NMR (300 MHz, DMSO-d6, ppm) δ 5.32 – 5.16 (m, 1H), 4.74 (t, J = 7.7 Hz, 1H), 4.35 (d, J = 5.2 Hz, 1H), 4.30 – 4.10 (m, 2H), 3.42 (s, 3H), 3.20 (d, J = 13.4 Hz, 1H), 1.93 – 1.70 (m, 4H), 1.53 (d, J = 6.3 Hz, 3H), 1.47 (s, 9H). [0567] Intermediate 7: tert-butyl 2-chloro-1-fluoro-5,5-dimethyl-12-(methylthio)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
[0568] Step 1: tert-Butyl (1R,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane-3-carboxylate [0569] Under nitrogen, to a solution of tert-butyl (1R,5S)-3,8-diazabicyclo[3.2.1]octane-3- carboxylate (10.0 g, 47.1 mmol) and K2CO3 (13.1 g, 94.9 mmol) in N,N-dimethylformamide (70 mL) was added (bromomethyl)benzene (12.3 g, 71.9 mmol) at 0oC. The result solution was stirred at room temperature for 1.5 hours. The reaction was quenched with water, extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-20% EtOAc / petroleum ether) to afford 12.8 g (89.8% yield) of the title compound as a light yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 303. [0570] Step 2: 3-(tert-Butyl) 2-isopropyl (1R,5S)-8-benzyl-3,8-diazabicyclo [3.2.1]octane-2,3- dicarboxylate
Figure imgf000181_0001
[0571] Under nitrogen, to a solution of tert-butyl (1R,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane- 3-carboxylate (10.0 g, 33.1 mmol) in diethyl ether (150 mL) was added N1,N1,N2,N2- tetramethylethane-1,2-diamine (7.69 g, 66.2 mmol) and s-BuLi (1.3 M in Cyclohexane) (51.2 mL, 66.6 mmol) at –78 °C. The solution was stirred at –78 °C for 1 hour. Then to the resulting solution was added isopropyl chloroformate (8.05 g, 65.7 mmol) at –78 °C. The resulting solution was then warmed to room temperature and stirred additional1.5 hours. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-15% EtOAc / petroleum ether) to afford 8.93 g (69.5% yield) of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 389. [0572] Step 3: (6S,9R)-10-Benzyl-1,1-dimethylhexahydro-1H,3H-6,9-epiminooxazolo[3,4- a]azepin-3-one (two enantiomers)
Figure imgf000182_0001
[0573] Under nitrogen, to a solution of 3-(tert-butyl) 2-isopropyl (1R,5S)-8-benzyl-3,8- diazabicyclo[3.2.1]octane-2,3-dicarboxylate (8.93 g, 23.0 mmol) in tetrahydrofuran (150 mL) was added MeMgBr (1 M in THF) (80 mL, 80 mmol) at -20oC. The solution was stirred at room temperature for 16 hours. The reaction was quenched by aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0- 40% EtOAc / petroleum ether) to afford 7g mixture of enantiomer. The mixture was separated by Prep-Chiral-SFC with the conditions: (Column: (S, S)-Whelk-O 15μm Kromasil, 3*25 cm, 5 μm; Mobile Phase A: CO2; Mobile Phase B: IPA; Flow rate: 100 mL/min; Gradient: isocratic 30% B; Back Pressure(bar): 100; Wavelength: 220 nm; RT1(min): 6.2; RT2(min): 9; Sample Solvent: MeOH; Injection Volume: 3 mL) to afford 2.37 g (36% yield) of the faster peak) (enantiomer 1) and 2.33 g (35.4% yield) the slower peak (enantiomer 2) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 287. [0574] Step 4: (6S,9R)-1,1-Dimethylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a] azepin-3-one
Figure imgf000182_0002
[0575] Under hydrogen (2 atm), a solution of (6S,9R)-10-benzyl-1,1-dimethylhexahydro-1H,3H- 6,9-epiminooxazolo[3,4-a]azepin-3-one (2.31 g, 8.07 mmol) (step 3, the faster peak) and Pd/C (10%, 652 mg) in methyl alcohol (80 mL) was stirred at room temperature for 2 hours. Then the Pd/C was filtered out. And the filtrate was concentrated under vacuum to afford 1.52 g (crude) of the title compound as white solid. LC-MS: (ESI, m/z): [M+H]+ = 197. The crude was used for next step without further purification. [0576] Step 5: tert-Butyl (6S,9R)-1,1-dimethyl-3-oxohexahydro-1H,3H-6,9-epiminooxazolo[3,4- a]azepine-10-carboxylate [0577] A solution of (6S,9R)-1,1-dimethylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3- one (1.51 g, 7.69 mmol), (Boc)2O (3.34 g, 15.3 mmol) and DIPEA (3.97 g, 30.8 mmol) in dichloromethane (40 mL) was stirred at room temperature for 2 hours. The solution was diluted with water, extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-33% EtOAc / petroleum ether) to afford 2.04 g (89.5% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 297. [0578] Step 6: tert-Butyl (1R,5S)-2-(2-hydroxypropan-2-yl)-3,8-diazabicyclo [3.2.1]octane-8- carboxylate
Figure imgf000183_0001
[0579] A solution of tert-butyl (6S,9R)-1,1-dimethyl-3-oxohexahydro-1H,3H-6,9-epiminooxazolo [3,4-a]azepine-10-carboxylate (1.01 g, 3.41 mmol) and NaOH (2.73 g, 68.3 mmol) in ethanol (12 mL) and water (6 mL) was stirred at 80oC for 6 hours. The solution was concentrated under vacuum. The residue was diluted with DCM. The solid was filtered out, and the filtrate was concentrated under vacuum to afford 892 mg (crude) of the title compound as yellow solid. LC- MS: (ESI, m/z): [M+H]+ = 271. The crude was used for next step without further purification. [0580] Step 7: tert-Butyl (1R,5S)-2-(2-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d] pyrimidin-5-yl)oxy)propan-2-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (isomer 1)
Figure imgf000183_0002
[0581] Under nitrogen, to a solution of tert-butyl (1R,5S)-2-(2-hydroxypropan-2-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (300 mg, 1.11 mmol) in tetrahydrofuran (20 mL) was added NaH (60%) (305 mg) at 0oC. The solution was stirred at room temperature for 0.5 hour. Then 5,7- dichloro-8-fluoro-2-(methylthio) pyrido[4,3-d]pyrimidin-4(3H)-one (625 mg, 2.23 mmol, intermediate 1) was added at 0oC and stirred at 60℃ for 16 hours. The reaction was quenched with aqueous NH4Cl and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-5% MeOH / DCM) to afford 304 mg (53.3% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 514. [0582] Step 8: tert-Butyl 2-chloro-1-fluoro-5,5-dimethyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (isomer 1)
Figure imgf000184_0001
[0583] A solution of tert-butyl (1R,5S)-2-(2-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)propan-2-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (isomer 1) (300 mg, 0.584 mmol), BOPCl (448 mg, 1.76 mmol) and DIPEA (603 mg, 4.67 mmol) in dichloromethane (12 mL) was stirred at room temperature for 24 hours. The reaction was quenched with water and extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-20% EtOAc / petroleum ether) to afford 210 mg (72.5% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 496. [0584] Intermediate 8: tert-Butyl (5aS,6S,9R)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-2-chloro- 1-fluoro-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000184_0002
[0585] Step 1: 3-Benzyl 8-(tert-butyl) (1R,2S,5S)-2-(hydroxymethyl)-3,8- diazabicyclo[3.2.1]octane-3,8-dicarboxylate
Figure imgf000185_0001
[0586] To a solution of tert-butyl (1R,2S,5S)-2-(hydroxymethyl)-3,8-diazabicyclo [3.2.1] octane-8- carboxylate (5.00 g, 20.6 mmol, intermediate 2/step 7) and N-ethyl - N-isopropylpropan-2-amine (5.33 g, 41.3 mmol) in dichloromethane (50 mL) was added benzyl chloroformate (4.57 g, 26.9 mmol) at 0 °C. The resulting solution was stirred for 1 h at room temperature. The reaction was quenched with water and extracted with DCM. The combined organic extracts were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-50% EtOAc / petroleum ether) to afford 7.70 g (99.1% yield) of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 377. [0587] Step 2: 3-Benzyl 8-(tert-butyl) (1S,2S,5R)-2-formyl-3,8-diazabicyclo[3.2.1]octane-3,8- dicarboxylate (the faster peak) and 3-Benzyl 8-(tert-butyl) (1S,2R,5R)-2-formyl-3,8- diazabicyclo[3.2.1]octane-3,8-dicarboxylate
Figure imgf000185_0002
[0588] Under nitrogen, to a solution of oxalyl dichloride (10.2 g, 80.9 mmol) in dichloromethane (130 mL) was added a solution of DMSO (12.6 g, 161 mmol) in dichloromethane (70 mL) dropwise slowly at –78 °C. After the solution was stirred at –78 °C for 15 min, a solution of 3-benzyl 8-(tert- butyl) (1R,2S,5S)-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane-3,8-dicarboxylate (15.1 g, 40.1 mmol) in dichloromethane (70 mL) was added dropwise slowly at –78 °C. After the solution was stirred at –78 °C for 15 min, the Et3N (25.4 g, 251 mmol) was added. The resulting solution was then warmed to room temperature and stirred for 1 hour. The reaction was quenched with water, extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-30% EtOAc / petroleum ether) to afford 8.65 g (57.6% yield) the faster peak and 4.18 g (27.8% yield) of the slower peak as light yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 375. [0589] Step 3: 3-Benzyl 8-(tert-butyl) (1S,2S,5R)-2-(oxiran-2-yl)-3,8-diazabicyclo[3.2.1]octane- 3,8-dicarboxylate (two diastereomers) [0590] To a solution of trimethylsulfoniumiodide (12.0 g, 58.9 mmol) in dimethyl sulfoxide (100 mL) and tetrahydrofuran (20 mL) was added NaH (60%) (2.17 g, 54.3 mmol) at room temperature. The solution was stirred for 1 hour. Then a solution of 3-benzyl 8-(tert-butyl) (1S,2S,5R)-2-formyl- 3,8-diazabicyclo[3.2.1]octane-3,8-dicarboxylate (5.01 g, 13.4 mmol) (the faster peak of last step) in tetrahydrofuran (20 mL) was added and stirred for 2 hours at room temperature. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-30% EtOAc / petroleum ether) to afford 0.83 g (16% yield) the faster peak (isomer 1) and 2.01 g (38.7% yield) of the slower peak (isomer 2) as light yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 389. [0591] Step 4: 3-Benzyl 8-(tert-butyl) (1S,2S,5R)-2-(1,2-dihydroxyethyl)-3,8- diazabicyclo[3.2.1]octane-3,8-dicarboxylate Boc
Figure imgf000186_0001
[0592] To a solution of 3-benzyl 8-(tert-butyl) (1S,2S,5R)-2-(oxiran-2-yl)-3,8-diazabicyclo [3.2.1] octane-3,8-dicarboxylate (1.96 g, 5.05 mmol) (isomer 2 of last step) in tetrahydrofuran (18 mL) was added aqueous H2SO4 (10% in water, 2 mL). The solution was stirred at 50oC for 16 hours. Then the solution was adjusted to pH=9~10 with aqueous NaOH solution (10%). And then to the solution was added DIPEA (2.31 g, 17.9 mmol) and Boc2O (1.64 g, 7.59 mmol). The resulting solution was stirred at room temperature for 2 hours. The reaction was diluted with water, extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-4% MeOH / DCM) to afford 1.52 g (74.4% yield) of the title compound as a light yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 407. [0593] Step 5: 3-Benzyl 8-(tert-butyl) (1S,2S,5R)-2-(2-((tert-butyldiphenylsilyl)oxy)-1- hydroxyethyl)-3,8-diazabicyclo[3.2.1]octane-3,8-dicarboxylate (isomer 2)
Figure imgf000186_0002
[0594] To a solution of 3-benzyl 8-(tert-butyl) (1S,2S,5R)-2-(1,2-dihydroxyethyl)-3,8-diazabicyclo [3.2.1]octane-3,8-dicarboxylate (1.51 g, 3.71 mmol) (isomer 2), DMAP (0.91 g, 7.46 mmol) and DIPEA (2.45 g, 19.0 mmol) in N,N-dimethylformamide (20 mL) was added tert- butylchlorodiphenylsilane (2.24 g, 8.15 mmol). The solution was stirred at room temperature for 16 hours. The reaction was diluted with water, extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-25% EtOAc / petroleum ether) to afford 2.22 g (92.7% yield) of the title compound as colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 645. [0595] Step 6: tert-Butyl (1S,2S,5R)-2-(2-((tert-butyldiphenylsilyl)oxy)-1-hydroxyethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (isomer 2)
Figure imgf000187_0001
[0596] Under hydrogen (2 atm), a solution of 3-benzyl 8-(tert-butyl) (1S,2S,5R)-2-(2-((tert- butyldiphenylsilyl) oxy)-1-hydroxyethyl)-3,8-diazabicyclo[3.2.1]octane-3,8-dicarboxylate (2.22 g, 3.44 mmol) and Pd/C (10%, 517 mg, 0.490 mmol) in methyl alcohol (50 mL) was stirred at room temperature for 1.5 hours. Then the Pd/C was filtered out. The filtrate was concentrated under vacuum to afford 1.57 g (crude) of the title compound as crude white solid. LC-MS: (ESI, m/z): [M+H]+ = 511. The crude was used for next step without further purification. [0597] Step 7: tert-Butyl (1S,2S,5R)-2-(2-((tert-butyldiphenylsilyl)oxy)-1-((7-chloro-8-fluoro-2- (methylthio)-4-oxo-3,4-dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)ethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000187_0002
[0598] Under nitrogen, to a solution of tert-butyl (1S,2S,5R)-2-(2-((tert-butyldiphenylsilyl)oxy)-1- hydroxyethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1.56 g, 3.05 mmol) in tetrahydrofuran (35 mL) was added NaH (60%) (1.03 g, 25.8 mmol) at 0oC. The solution was stirred at room temperature for 0.5 hour. Then 5,7-dichloro-8-fluoro-2-(methylthio) pyrido[4,3-d]pyrimidin-4(3H)- one (2.11 g, 7.53 mmol, intermediate 1) was added. The solution was stirred at room temperature for 16 hours. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-7% MeOH / DCM) to afford 1.44 g (62.6% yield) of the title compound as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 754. [0599] Step 8: tert-Butyl (5aS,6S,9R)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-2-chloro-1-fluoro- 12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (isomer 2)
Figure imgf000188_0001
[0600] A solution of tert-butyl (1S,2S,5R)-2-(2-((tert-butyldiphenylsilyl) oxy)-1-((7-chloro-8- fluoro-2-(methylthio)-4-oxo-3,4-dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)ethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (1.44 g, 1.91 mmol) BOPCl (1.11 g, 4.35 mmol) and DIPEA (1.49 g, 11.6 mmol) in dichloromethane (40 mL) was stirred at room temperature for 16 hours. The reaction was quenched with water and extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-20% EtOAc / petroleum ether) to afford 1.14 g (81.1% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 736. [0601] Intermediate 9: 2,2,2-Trifluoroacetaldehyde--(2-methylazetidin-2-yl)methanol
Figure imgf000188_0002
[0602] To a solution of tert-butyl 2-(hydroxymethyl)-2-methylazetidine-1-carboxylate (201 mg, 1.00 mmol) in HFIP (4 mL) was added 2,2,2-trifluoroacetic acid (0.2 mL, 2.70 mmol) at room temperature, and the mixture was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum to afford the title compound (240 mg, crude) as a light yellow oil. LC- MS: (ESI, m/z): [M-TFA+H]+ = 102. The crude was used for next step without further purification. [0603] Intermediate 10: 2-(Azetidin-2-yl)-1-methyl-1H-imidazole
Figure imgf000188_0003
[0604] Step 1: Benzyl 2-(hydroxymethyl)azetidine-1-carboxylate [0605] To a solution of azetidin-2-ylmethanol (1.00 g, 11.5 mmol) and DIPEA (2.97 g, 23.0 mmol) in dichloromethane (50 mL) was added a solution of CbzCl (2.94 g, 17.2 mmol) in dichloromethane (30 mL) dropwise at 0°C, and the mixture was stirred at room temperature for 1 hour. The solvent was concentrated under vacuum. The residue was purified by reverse phase flash chromatography on pre-packed C18 column (gradient: 0-100% CH3CN in water (0.05% NH4HCO3)) to afford the title compound (1.70 g, 67% yield) as a colorless solid. LC-MS: (ESI, m/z): [M+H]+ = 222. [0606] Step 2: Benzyl 2-formylazetidine-1-carboxylate
Figure imgf000189_0001
[0607] Under nitrogen, to a solution of benzyl 2-(hydroxymethyl)azetidine-1-carboxylate (1.00 g, 4.52 mmol) and DIPEA (1.75 g, 13.6 mmol) in dichloromethane (10 mL) was added a solution of py-SO3 (2.16 g, 13.6 mmol) in DMSO (10 mL) dropwise at 0°C and stirred for 2 hours. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by reverse phase flash chromatography on pre-packed C18 column (gradient: 0-100% CH3CN in water (0.05% NH4HCO3)) to afford the title compound (660 mg, 67% yield) as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 220. [0608] Step 3: Benzyl 2-(1H-imidazol-2-yl)azetidine-1-carboxylate
Figure imgf000189_0002
[0609] To a solution of benzyl 2-formylazetidine-1-carboxylate (660 mg, 3.01mmol) in methanol (15 mL) was added oxalaldehyde (40 wt% aqueous solution, 7 mL, 60.8 mmol) and ammonia (25 wt% aqueous solution, 8 mL, 107 mmol) at room temperature and stirred for 3 hours. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-60% ethyl acetate in petroleum ether) to afford the title compound (420 mg, 54% yield) as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 258. [0610] Step 4: Benzyl 2-(1-methyl-1H-imidazol-2-yl)azetidine-1-carboxylate [0611] To a solution of benzyl 2-(1H-imidazol-2-yl)azetidine-1-carboxylate (420 mg, 1.53 mmol) in tetrahydrofuran (10 mL) was added NaH (60% dispersion in mineral oil, 122 mg, 3.06 mmol) at 0 °C and stirred for 30 minutes. Then MeI (435 mg, 3.06 mmol) was added dropwise at 0 °C, and the mixture was stirred at room temperature for 2 hours. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (270 mg, 65% yield) as a brown oil. LC-MS: (ESI, m/z): [M+H]+ = 272. [0612] Step 5: 2-(Azetidin-2-yl)-1-methyl-1H-imidazole
Figure imgf000190_0001
[0613] Under hydrogen, a mixture of benzyl 2-(1-methyl-1H-imidazol-2-yl) azetidine-1- carboxylate (150 mg, 0.554 mmol) and 10%Pd/C (58.7 mg, 0.0554mmol) in ethyl acetate (20 mL) was stirred at room temperature 2 hours. The resulting mixture was filtered over celite, and the filter cake was washed with ethanol. The combined filtrate was concentrated under vacuum to afford the title compound (110 mg, crude) as a light yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 138. [0614] Intermediate 11: 3-Fluoro-4-methoxy-1-(3-methylazetidin-3-yl) pyrrolidine dihydrochloride (two trans isomers)
Figure imgf000190_0002
[0615] Step 1: 1-(1-Benzhydryl-3-methylazetidin-3-yl)-3-fluoro-4-methoxypyrrolidine (two trans isomers)
Figure imgf000190_0003
[0616] A solution of 3-fluoro-4-methoxypyrrolidine (mixture of trans isomers, 0.500 g, 4.20 mmol) and 1-benzhydryl-3-methylazetidin-3-yl methanesulfonate (2.78 g, 8.40 mmol) in i-PrOH (50 ml) was stirred at 70 °C for 1 h. The resulting mixture was concentrated under vacuum. The residue was purified by reverse phase flash chromatography on pre-packed C18 column (gradient: 0-100% CH3CN in water (0.05% NH4HCO3)) to afford a mixture of trans isomers (1.10 g, 74.0% yield) as a yellow oil. Two trans isomers were separated by Chiral-Prep-HPLC with the following conditions: (Column: CHIRALPAK IF 2*25 cm, 5 μm; Mobile Phase A: Hex (0.5% 2M NH3-MeOH): EtOH=85: 15; Mobile Phase B: EtOH--HPLC; Flow rate: 20 mL/min; Gradient: isocratic; Wavelength: 220/254 nm; RT1(min) 4.56; RT2(min) 5) to afford 440 mg (29.5% yield, the faster peak) and 460 mg (30.9% yield, the slower peak) as yellow oils. LC-MS: (ESI, m/z): [M+H]+ = 355. [0617] Step 2: 3-Fluoro-4-methoxy-1-(3-methylazetidin-3-yl)pyrrolidine dihydrochloride (two trans isomers)
Figure imgf000191_0001
[0618] Under hydrogen, a mixture of 1-(1-benzhydryl-3-methylazetidin-3-yl)-3-fluoro-4- methoxypyrrolidine (200 mg, 0.563 mmol, the faster peak of last step), 20% Pd(OH)2/C (78.8 mg, 0.0563 mmol, contain 50% water) and HCl (1M aqueous solution, 4 mL) in ethanol (20 mL) was stirred at room temperature overnight. The resulting mixture was filtered through Celite, and the filter cake was washed with ethanol. The combined filtrate was concentrated under vacuum to afford the title compound (200 mg, crude, trans isomer 1) as a light yellow oil. LC-MS: (ESI, m/z): [M-2HCl+H]+ = 189. The crude was used without further purification. [0619] Analogous to method described as above, trans isomer 2 (210 mg, crude) was prepared from the slower peak of last step (200 mg, 0.563 mmol) as a light yellow oil. LC-MS: (ESI, m/z): [M-2HCl+H]+ = 189. The crude product was used without further purification. [0620] Intermediate 12: tert-Butyl (1R,2S,5S)-2-((R)-2,2,2-trifluoro-1-hydroxyethyl)-3,8- diazabicyclo [3.2.1] octane-8-carboxylate
[0621] Step 1: 3-Benzyl 8-(tert-butyl) (1R,2S,5S)-2-(hydroxymethyl)-3,8-diazabicyclo [3.2.1]octane-3,8-dicarboxylate
Figure imgf000192_0001
[0622] To a solution of tert-butyl (1R,2S,5S)-2-(hydroxymethyl)-3,8-diazabicyclo [3.2.1] octane-8- carboxylate (5.00 g, 20.6 mmol) and N-ethyl - N-isopropylpropan-2-amine (5.33 g, 41.3 mmol) in dichloromethane (50.0 mL) was added benzyl chloroformate (4.57 g, 26.9 mmol) at 0 °C. The resulting solution was stirred for 1 h at room temperature. The reaction was quenched with water and extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-50% EtOAc / petroleum ether) to afford 7.70 g (99.1% yield) of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 377. [0623] Step 2: 3-Benzyl 8-(tert-butyl) (1R,2S,5S)-2-formyl-3,8-diazabicyclo [3.2.1] octane-3,8- dicarboxylate and 3-benzyl 8-(tert-butyl) (1R,2R,5S)-2-formyl-3,8-diazabicyclo[3.2.1]octane-3,8- dicarboxylate
Figure imgf000192_0002
[0624] Under nitrogen, to a solution of oxalyl dichloride (18.4 mL, 2 M in DCM) in dichloromethane (10.0 mL) was added dimethylsulfoxide (5.73 g, 73.5 mmol) in dichloromethane (10.0 mL) at –78 °C. The resulting solution was stirred for 30 min at –78 °C. Then 3-benzyl 8-(tert- butyl) (1R,2S,5S)-2-(hydroxymethyl)-3,8-diazabicyclo [3.2.1] octane-3,8-dicarboxylate (6.90 g, 18.3 mmol) in dichloromethane (70.0 mL) was added at –78 °C, and the mixture was stirred for 1 h. Then triethylamine (11.1 g, 110 mmol) was added at –78 °C. The reaction mixture was warmed to room temperature and stirred additional 1 h. The reaction was diluted with water and extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-30% EtOAc / petroleum ether) to afford 1.46 g (21% yield) of the faster peak and 2.9 g (42% yield) of the slower peak as colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 375. Note: 3-Benzyl 8-(tert-butyl) (1R,2S,5S)-2-formyl-3,8-diazabicyclo [3.2.1] octane-3,8-dicarboxylate epimerizes on silica gel. [0625] Faster peak: 1H NMR (300 MHz, DMSO-d6) δ 9.43 (d, J = 3.8 Hz, 1H), 7.38 - 736 (s, 5H), 5.12 (s, 2H), 4.23 (s, 1H), 4.08 (s, 1H), 3.78 (s, 1H), 3.57 (d, J = 12.1 Hz, 1H), 3.16 – 3.20 (m, 1H), 2.00 – 1.86 (m, 2H), 1.79 – 1.73 (m, 2H), 1.42 (s, 9H). [0626] Slower peak: 1H NMR (300 MHz, DMSO-d6) δ 9.58 (s, 1H), 7.45 – 7.23 (m, 5H), 5.15 – 5.00 (m, 2H), 4.76 (t, J = 8.1 Hz, 1H), 4.60 -4.64 (m, 1H), 4.22 – 3.98 (m, 1H), 3.75 – 3.58 (m, 1H), 3.18 – 3.06 (m, 1H), 2.09 – 1.80 (m, 2H), 1.82 – 1.52 (m, 2H), 1.36 (s, 9H). [0627] Step 3: 3-Benzyl 8-(tert-butyl) (1R,2S,5S)-2-(2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl)- 3,8-diazabicyclo [3.2.1] octane-3,8-dicarboxylate and 3-benzyl 8-(tert-butyl) (1R,2R,5S)-2-(2,2,2- trifluoro-1-((trimethylsilyl) oxy) ethyl)-3,8-diazabicyclo [3.2.1] octane-3,8-dicarboxylate
Figure imgf000193_0001
[0628] A solution of 3-benzyl 8-(tert-butyl) (1R,2S,5S)-2-formyl-3,8-diazabicyclo [3.2.1] octane- 3,8-dicarboxylate (faster peak of step 2) (1.46 g, 3.90 mmol), trimethyl(trifluoromethyl)silane (1.11 g, 7.82 mmol) and LiOAc (258 mg, 3.90 mmol) in N, N-dimethylformamide (15.0 mL) was stirred for 1 h at room temperature. The reaction was diluted with EtOAc and washed with water. The organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum to afford 2.00 g (crude) of compound A as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 517. [0629] Analogous to method described as above, 3.80 g crude compound B was prepared from 2.80g slower peak of step 2. [0630] Step 4: 3-Benzyl 8-(tert-butyl) (1R,2S,5S)-2-((S)-2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl)-3,8-diazabicyclo [3.2.1] octane-3,8-dicarboxylate and 3-benzyl 8-(tert-butyl) (1R,2S,5S)-2- ((R)-2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl)-3,8-diazabicyclo [3.2.1] octane-3,8-dicarboxylate
Figure imgf000193_0002
[0631] The mixture of diastereomers of 3-Benzyl 8-(tert-butyl) (1R,2S,5S)-2-(2,2,2-trifluoro-1- ((trimethylsilyl)oxy)ethyl)-3,8-diazabicyclo[3.2.1]octane-3,8-dicarboxylate (6.50 g crude, compound A of last step) was separated by flash chromatography on silica gel (gradient: 0-15% EtOAc in petroleum ether) to afford 3.20 g compound A1 (the faster peak) and 810 mg compound A2 (the slower peak, desired isomer) as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 517. [0632] Compound A1: 1H NMR (300 MHz, DMSO-d6) δ 7.46 – 7.11 (m, 5H), 5.07 (s, 2H), 4.87 (m, 1H), 4.38 (d, J = 46.1 Hz, 1H), 4.24 – 3.93 (m, 3H), 3.17 – 2.83 (m, 1H), 2.43 (m, 1H), 1.86 (s, 2H), 1.56 (s, 1H), 1.33 (s, 9H), 0.09 (s, 9H). [0633] Compound A2: 1H NMR (300 MHz, DMSO-d6) δ 7.49 – 7.19 (m, 5H), 4.99 (d, J = 8.0 Hz, 2H), 4.70 (d, J = 29.2 Hz, 2H), 4.28 (d, J = 16.8 Hz, 1H), 4.11 (s, 2H), 2.69 (d, J = 16.1 Hz, 1H), 2.02 (d, J = 13.2 Hz, 1H), 1.88 (d, J = 27.8 Hz, 2H), 1.54 (d, J = 10.9 Hz, 1H), 1.31 (d, J = 9.6 Hz, 9H), 0.07 (s, 9H). [0634] Step 5: tert-Butyl (1R,6S,9R,9aS)-3-oxo-1-(trifluoromethyl) hexahydro-1H,3H-6,9- epiminooxazolo[3,4-a] azepine-10-carboxylate
Figure imgf000194_0001
[0635] A solution of 3-benzyl 8-(tert-butyl) (1R,2S,5S)-2-((R)-2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl)-3,8-diazabicyclo [3.2.1] octane-3,8-dicarboxylate (compound A2 of last step) (800 mg, 1.55 mmol) and TBAF (1.60 mL, 1 M in THF) in tetrahydrofuran (10 mL) was stirred overnight at room temperature. The reaction mixture was diluted with EtOAc and washed with water. The organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified on a C18 column (solvent gradient: 0-100% MeOH in water (0.05% NH4HCO3)) to afford 480 mg (92% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 337. [0636] Step 6: tert-Butyl (1R,2S,5S)-2-((R)-2,2,2-trifluoro-1-hydroxyethyl)-3,8-diazabicyclo [3.2.1] octane-8-carboxylate
Figure imgf000194_0002
[0637] To a solution of tert-butyl (1R,6S,9R,9aS)-3-oxo-1-(trifluoromethyl) hexahydro-1H,3H-6,9- epiminooxazolo[3,4-a] azepine-10-carboxylate (480 mg, 1.43 mmol) in ethanol (5.00 mL) was added NaOH (571 mg, 14.3 mmol) in water (1.0 mL). The resulting solution was stirred for 1 h at 80 °C. The solvent was evaporated under vacuum. The residue was dissolved in DCM and solids were removed by filtration. The solvent was evaporated under vacuum to afford 460 mg (crude) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 311. 1H NMR (300 MHz, DMSO-d6) δ 3.95 (br, 2H), 3.67 (br, 1H), 2.90-2.80 (br, 1H), 2.80-2.70 (m, 1H), 2.68-2.60 (m, 1H), 2.25 (br, 1H), 1.95-1.85 (m, 1H), 1.82-1.52 (m, 3H), 1.40 (s, 9H). [0638] Intermediate 13: tert-Butyl (5R,5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate
Figure imgf000195_0001
[0639] Step 1: tert-Butyl (1S,2S,5R)-2-((R)-1-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d] pyrimidin-5-yl) oxy)-2,2,2-trifluoroethyl)-3,8-diazabicyclo [3.2.1] octane-8- carboxylate
Figure imgf000195_0002
[0640] Under nitrogen, to a solution of tert-butyl (1R,2S,5S)-2-((R)-2,2,2-trifluoro-1- hydroxyethyl)-3,8-diazabicyclo [3.2.1] octane-8-carboxylate (460 mg, 1.48 mmol, intermediate 12) in tetrahydrofuran (10.0 mL) was added NaH (356 mg, 8.90 mmol, 60% in mineral oil) at 0 °C. [0641] The resulting solution was stirred for 30 min at room temperature and then recooled to 0 °C. 5,7-Dichloro-8-fluoro-2-(methylthio) pyrido[4,3-d] pyrimidin-4(3H)-one (621 mg, 2.22 mmol, intermediate 1) was then added at 0 °C, and the reaction was stirred overnight at room temperature. The reaction was quenched with saturated aqueous NH4Cl solution, and the mixture was extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to afford 1.10 g (crude) of the title compound as a yellow solid. LC- MS: (ESI, m/z): [M+H]+ = 554. [0642] Step 2: tert-Butyl (5R,5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)-5-(trifluoromethyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate [0643] A solution of tert-butyl (1S,2S,5R)-2-((R)-1-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d] pyrimidin-5-yl) oxy)-2,2,2-trifluoroethyl)-3,8-diazabicyclo [3.2.1] octane-8- carboxylate (700 mg, 1.26 mmol), BOPCl (1.2 g, 5.1 mmol) and DIPEA (2.46 g, 19.0 mmol) in dichloromethane (15.0 mL) was stirred overnight at room temperature. The solvent was then concentrated under vacuum, and the resulting residue was purified by flash chromatography on silica gel (gradient: 0-25% EtOAc in petroleum ether) to afford 548 mg (81% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+= 536. 1H NMR (300 MHz, DMSO-d6) δ 5.74 – 5.69 (m, 1H), 5.24 (d, J = 13.3 Hz, 1H), 4.44 (d, J = 10.0 Hz, 1H), 4.31 (d, J = 18.1 Hz, 2H), 3.20 (d, J = 13.3 Hz, 1H), 2.58 (s, 3H), 1.89 (s, 4H), 1.46 (s, 9H). [0644] Intermediate 14: tert-Butyl (5R,5aS,6S,9R)-2-chloro-1-fluoro-12-(methylsulfonyl)-5- (trifluoromethyl) -5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000196_0001
[0645] Under nitrogen, to a solution of tert-butyl (5R,5aS,6S,9R)-2-chloro-1-fluoro-12- (methylthio)-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (80.0 mg, 0.150 mmol, intermediate 13) in ethyl acetate (2.00 mL) was added 3-chlorobenzoperoxoic acid (77.2 mg, 0.450 mmol) at 0 °C. The resulting solution was stirred for 1 h at room temperature. The solution was quenched with Na2S2O3 aqueous and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-50% EtOAc / petroleum ether) to afford 51.0 mg (60.2% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 568. [0646] Intermediate 15: 3-Fluoro-N,N-bis(4-methoxybenzyl)-6-methyl-4-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)pyridin-2-amine [0647] Step 1: 4-Bromo-3-fluoro-6-methylpyridin-2-amine
Figure imgf000197_0001
[0648] To a solution of 4-bromo-6-methylpyridin-2-amine (1.00g, 5.35mmol) in CHCl3 (6mL) and water (6mL) was added selectfluor (946mg, 2.67mmol) at room temperature. The reaction was stirred at room temperature overnight. The reaction mixture was concentrated under vacuum. EtOAc was added and washed with water. The organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-100% EtOAc in petroleum ether) to afford faster peak (112mg, 10.2% yield) and slower peak (215mg, 19.1% yield) as yellow solids. [0649] Faster peak: LC-MS: (ESI, m/z): [M+H]+ = 205. 1H NMR (300 MHz, DMSO-d6) δ 6.64 (d, J = 3.7 Hz, 1H), 6.40 (s, 2H), 2.21 (d, J = 1.2 Hz, 3H). [0650] Slower peak: LC-MS: (ESI, m/z): [M+H]+ = 205. 1H NMR (300 MHz, DMSO-d6) δ 6.54 (d, J = 3.8 Hz, 1H), 5.99 (s, 2H), 2.25 (d, J = 3.2 Hz, 3H). [0651] Step 2: 4-Bromo-3-fluoro-N,N-bis(4-methoxybenzyl)-6-methylpyridin-2-amine
Figure imgf000197_0002
[0652] To a solution of 4-bromo-3-fluoro-6-methylpyridin-2-amine (110mg, 0.540mmol, the faster peak of last step) in DMF (1 mL) was added 60% NaH (53.6mg, 1.34mmol) at 0 °C. The mixture was stirred for 20 min at 0oC. PMBCl (185mg, 1.18mmol) was added and the mixture was allowed to warm to room temperature and stirred for 1 hour. The reaction was quenched by water. The resulting mixture was extracted with EtOAc. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-40% EtOAc in petroleum ether) to afford the title compound (175mg, 72.3% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 445. [0653] Step 3: 3-Fluoro-N,N-bis(4-methoxybenzyl)-6-methyl-4-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)pyridin-2-amine
Figure imgf000198_0001
[0654] Under nitrogen, a solution of 4-bromo-3-fluoro-N,N-bis(4-methoxybenzyl)-6- methylpyridin-2-amine (150mg, 0.340mmol), B2Pin2 (128mg, 0.510mmol), Pd(dppf)Cl2 (49.3mg, 0.0700mmol) and KOAc (66.0mg, 0.670mmol) in 1,4-dioxane (3mL) was stirred at 80 °C for 4 hours. The solution was cooled to room temperature. The resulting mixture was filtered. The filtrate was concentrated under reduced pressure. The crude product was diluted with water and extracted with EtOAc. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate. The solvent was concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel (gradient: 0-5% MeOH in DCM) to afford the title compound (150mg, 89.8% yield) as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 411 (Mass of the boronic acid). 1H NMR (300 MHz, DMSO-d6) δ 7.20 – 7.11 (m, 4H), 6.91 – 6.80 (m, 4H), 6.68 (d, J = 2.4 Hz, 1H), 4.50 (s, 4H), 3.70 (s, 6H), 2.27 (s, 3H), 1.26 (s, 12H). [0655] Intermediate 16: (6-(Bis(4-methoxybenzyl) amino)-2-methyl-3-(trifluoromethyl) pyridin- 4-yl) boronic acid
Figure imgf000198_0002
[0656] Step 1: 4-Bromo-N, N-bis(4-methoxybenzyl)-6-methylpyridin-2-amine [0657] Under nitrogen, to a solution of 4-bromo-6-methylpyridin-2-amine (1.0 g, 5.35 mmol) was added NaH (535 mg, 13.4 mmol, 60% oil suspension) at 0 °C. After 20 min, PMBCl (1.85g, 11.8mmol) was added, and the reaction was warmed to room temperature. After 1 h, the reaction was quenched with water, and the resulting mixture was extracted with EtOAc. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate, and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-20% EtOAc in petroleum ether) to afford the title compound (2.20 g, 97% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 427. [0658] Step 2: 4-Bromo-5-iodo-N, N-bis(4-methoxybenzyl)-6-methylpyridin-2-amine
Figure imgf000199_0001
[0659] A solution of 4-bromo-N, N-bis(4-methoxybenzyl)-6-methylpyridin-2-amine (2.10 g, 4.91 mmol) and NIS (1.11 g, 4.91 mmol) in acetic acid (20mL) was stirred at room temperature for 30 min. The reaction was quenched with water, and the resulting mixture was extracted with EtOAc. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-20% EtOAc in petroleum ether) to afford the title compound (2.60 g, 96% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 553. [0660] Step 3: 4-Bromo-N,N-bis(4-methoxybenzyl)-6-methyl-5-(trifluoromethyl)pyridin-2-amine
Figure imgf000199_0002
[0661] Under nitrogen, a solution of 4-bromo-5-iodo-N, N-bis(4-methoxybenzyl)-6-methylpyridin- 2-amine (2.58 g, 4.66 mmol), methyl 2,2-difluoro-2-(fluorosulfonyl) acetate (5.94 mL, 46.6 mmol) and CuI (8.86 g, 46.6 mmol) in N, N-dimethylacetamide (25 mL) was stirred at 90 °C for 1 h. The solution was cooled to room temperature and filtered. The filtrate was concentrated under reduced pressure, and the crude product was diluted with EtOAc, washed with water. The collected organic was dried over anhydrous Na2SO4 and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-20% EtOAc in petroleum ether) to afford the title compound (1.92 g, 83% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 495. [0662] Step 4: (6-(Bis(4-methoxybenzyl) amino)-2-methyl-3-(trifluoromethyl) pyridin-4-yl) boronic acid
Figure imgf000200_0001
[0663] Under nitrogen, to a solution of 4-bromo-N, N-bis(4-methoxybenzyl)-6-methyl-5- (trifluoromethyl) pyridin-2-amine (1.83g, 3.69mmol) and triisopropyl borate (1.28 mL, 5.54mmol) in tetrahydrofuran (20mL) was added a solution of n-BuLi (2.77 mL, 1.6 M in hexane) –78 °C, and the reaction was maintained at –78 °C for 1 h. The reaction was quenched with water, and the resulting mixture was extracted with EtOAc. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-40% EtOAc in petroleum ether) to afford the title compound (562 mg, 33% yield) as a white oil. LC-MS: (ESI, m/z): [M+H]+ = 461. [0664] Intermediate 17: tert-Butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl- 3-(trifluoromethyl) pyridin-4-yl)-1-fluoro-12-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14- carboxylate
Figure imgf000200_0002
[0665] Step 1: tert-Butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3- (trifluoromethyl) pyridin-4-yl)-1-fluoro-12-(methylthio)-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14- carboxylate [0666] Under nitrogen, a solution of tert-butyl (5R,5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)- 5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate (2.00 g, 3.73 mmol, intermediate 13), [6-[bis[(4- methoxyphenyl) methyl]amino]-2-methyl-3-(trifluoromethyl)-4-pyridyl]boronic acid (3.11 g, 6.74 mmol, intermediate 16), cataCXium A Pd G3 (544 mg, 0.750 mmol) and K3PO4 (7.5 mL, 1.5 M in H2O) in THF (37.4 mL) was heated at 60 °C. After 1 h, the reaction was cooled to room temperature and partitioned between water and EtOAc. The separated organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-40% EtOAc / petroleum ether) to afford 2.80 g (82% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 916. [0667] Step 2: tert-Butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3- (trifluoromethyl) pyridin-4-yl)-1-fluoro-12-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14- carboxylate
Figure imgf000201_0001
[0668] To a solution of tert-butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3- (trifluoromethyl) pyridin-4-yl)-1-fluoro-12-(methylthio)-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14- carboxylate (1.60 g, 1.75 mmol) in EtOAc (20 mL) was added m-CPBA (0.900 mg, 5.24 mmol) at 0 °C, and the reaction was warmed to room temperature. After 1 h, the reaction was quenched with saturated aqueous Na 2 S 2 O 3 solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-55% EtOAc/petroleum ether) to afford 1.29 g (78% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 948. [0669] Intermediate 18: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000202_0001
[0670] Step 1: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(methylthio)-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000202_0002
[0671] Under nitrogen, a solution of [5-[bis[(4-methoxyphenyl)methyl]amino]-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl]boronic acid (1.59 g, 3.33 mmol, intermediate 4), tert-butyl (5R,5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (902 mg, 1.68 mmol, intermediate 13), cataCXiumA Pd G3 (241 mg, 0.330 mmol) and K3PO4 (2 mL, 1.5 M in H2O) in THF (5 mL) was stirred for 2 h at 60 °C. The resulting solution was partitioned between water and EtOAc. The collected organic was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-35% EtOAc / petroleum ether) to afford 1.24 g (79% yield) of the title compound as a yellow solid. LC- MS: (ESI, m/z): [M+H]+ = 933. [0672] Step 2: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [0673] To a solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(methylthio)-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (929 mg, 1mmol) in EtOAc (5 mL) was added m-CPBA (517 mg, 3.02 mmol) at room temperature. After 1.5 h, the reaction was quenched with saturated aqueous Na2S2O3 solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-55% EtOAc/petroleum ether) to afford 735 mg (76% yield) of the title compound as a yellow solid. LC- MS: (ESI, m/z): [M+H]+ = 965. [0674] Intermediate 19: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-oxo-5a,6,7,8,9,10,12,13-octahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000203_0001
[0675] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (374 mg, 0.410 mmol, intermediate 5) in tetrahydrofuran (3.00 mL) was added NaOH (164 mg, 4.11 mmol) in water (0.600 mL) at room temperature. The resulting solution was stirred for 1 h at room temperature and then partitioned between water and DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to afford 332 mg (crude) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 849. The crude product was used for next step without further purification. [0676] Intermediate 20: (1-(((tert-Butyldiphenylsilyl) oxy) methyl)-2,2- difluorocyclopropyl)methanol
Figure imgf000203_0002
[0677] To a solution of (2,2-difluorocyclopropane-1,1-diyl)dimethanol (500 mg, 3.63 mmol) and imidazole (493 mg, 7.25 mmol) in dichloromethane (25 mL) was added TBDPSCl (996 mg, 3.63 mmol) at 0 °C, and the mixture was stirred at room temperature for 1 hour. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% ethyl acetate in petroleum ether) to afford the title compound (820 mg, 60% yield) as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 377. [0678] Intermediate 21: (2,2-difluoro-1-((trityloxy)methyl)cyclopropyl)methanol(2,2-difluoro-1- ((trityloxy)methyl)cyclopropyl)methanol
Figure imgf000204_0001
[0679] Under nitrogen, a solution of (2,2-difluorocyclopropane-1,1-diyl)dimethanol (5.01 g, 36.3 mmol) in dichloromethane (5 mL) was added Et3N (7.33 g, 72.6 mmol) and trityl chloride (10.1 g, 36.3 mmol) at room temperature. After 2 h, the resulting solution was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-20% EtOAc / petroleum ether) to afford 8.81 g of the racemic product. The mixture was separated by Chiral- HPLC (Column: UniChiral OD-5H 21.2*250 cm; Mobile Phase A: Hex, Mobile Phase B: IPA; Flow rate: 20 mL/min; Gradient: isocratic 1; Wavelength: 220/254 nm; RT1(min): 21.566; RT2(min): 27.371) to afford 3.22 g (23% yield) of the faster peak and 3.11 g (23% yield) of slower peak as yellow solids. LC-MS: (ESI, m/z): [M+H]+ = 381. [0680] Intermediate 22: (1-((Dimethylamino)methyl)-2,2-difluorocyclopropyl) methanol (two single enantiomers)
Figure imgf000204_0002
[0681] Step 1: (2,2-Difluoro-1-((trityloxy)methyl)cyclopropyl)methanol
Figure imgf000204_0003
[0682] Under nitrogen, a solution of (2,2-difluorocyclopropane-1,1-diyl)dimethanol (5.01 g, 36.3 mmol) in dichloromethane (5 mL) was added Et3N (7.33 g, 72.6 mmol) and trityl chloride (10.1 g, 36.3 mmol) at room temperature. After 2 h, the resulting solution was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-20% EtOAc / petroleum ether) to afford 8.81 g of the racemic product. The mixture was separated by Chiral- HPLC (Column: UniChiral OD-5H 21.2*250 cm; Mobile Phase A: Hex, Mobile Phase B: IPA; Flow rate: 20 mL/min; Gradient: isocratic 1; Wavelength: 220/254 nm; RT1(min): 21.566; RT2(min): 27.371) to afford 3.22 g (23.3% yield) of the faster peak and 3.11 g (22.5% yield) of slower peak as yellow solids. LC-MS: (ESI, m/z): [M+H]+ = 381. [0683] Step 2: (2,2-Difluoro-1-((trityloxy)methyl)cyclopropyl)methyl methanesulfonate
Figure imgf000205_0001
[0684] To a solution of (2,2-difluoro-1-((trityloxy)methyl)cyclopropyl)methanol (1.00 g, 2.63 mmol) (from the faster peak of step 1) in THF (10mL) and DIPEA (1.70 g, 13.2 mmol) was added Ms2O (917 mg, 5.27 mmol) at room temperature. After 2 h, the resulting solution was partitioned between water and EtOAc. The collected organic was dried over anhydrous sodium sulfate and concentrated under vacuum to afford 1.32 g (crude) of the title compound as a yellow solid. LC- MS: (ESI, m/z): [M+H]+ = 459. The crude product was used without further purification. [0685] Step 3: 1-(2,2-Difluoro-1-((trityloxy)methyl)cyclopropyl)-N,N-dimethylmethanamine
Figure imgf000205_0002
[0686] Under nitrogen, a solution of [(2,2-difluoro-1-((trityloxy) methyl)cyclopropyl)methyl methanesulfonate (871 mg, 1.90 mmol) and K2CO3 (3.93 g, 28.5 mmol) in THF (9 mL) was added N,N-dimethylamine (14.3 mL, 2 M in THF) at room temperature. The resulting solution was stirred for overnight at 60 ℃. The solvent was concentrated under vacuum, and the residue was purified by flash chromatography on silica gel (gradient: 0%-40% EtOAc / petroleum ether) to afford 701 mg (90.6% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 408. [0687] Step 4: (1-((Dimethylamino)methyl)-2,2-difluorocyclopropyl) methanol
Figure imgf000205_0003
[0688] Under nitrogen, a solution of 1-(2,2-difluoro-1-((trityloxy)methyl)cyclopropyl)-N,N- dimethylmethanamine (313 mg, 0.770 mmol) in dichloromethane (3.5 mL) and TFA (0.5 mL) was stirred at room temperature for 1.5 hours. The solvent was concentrated under vacuum to afford 126 mg (crude) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 166. The crude product was used without further purification. [0689] Analogous to method described as above, the other isomer was prepared from the slower peak of step 1. [0690] Intermediate 23: 2,2-Dichloropropane-1,3-diol
Figure imgf000206_0001
Step 1: Dimethyl 2,2-dichloromalonate
Figure imgf000206_0002
[0691] Under nitrogen, to a solution of dimethyl malonate (1.00 g, 7.35 mmol) and Et3N (2.29 g, 22.7 mmol) in DCM (12 mL) was added trifluoromethanesulfonyl chloride (2.54 g, 15.1 mmol) at 0 °C. The solution was stirred for 4 h at room temperature. The resulting solution was partitioned between water and DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-18% EtOAc / petroleum ether) to afford 1.15 g (78% yield) of the title compound as a colorless oil. 1H NMR (300 MHz, CDCl3) δ 3.78 (s, 6H) [0692] Step 2: 2,2-Dichloropropane-1,3-diol
Figure imgf000206_0003
[0693] Under nitrogen, a solution of dimethyl 2,2-dichloromalonate (1.00 g, 4.98 mmol) in THF (10 mL) was added LAH (17.6 mL, 1 M in THF) at 0 °C, and the mixture was stirred for 1 h at 0 °C. The reaction was quenched with Na2SO4.10H2O at 0℃. After filtration, the filtrate was used for next step without further purification. [0694] Intermediate 24: (Tetrahydrofuran-3,4-diyl) dimethanol (mixture of cis isomers)
Figure imgf000206_0004
[0695] Step 1: Diethyl tetrahydrofuran-3,4-dicarboxylate (ca.8:1 mixture of cis and trans isomers)
Figure imgf000206_0005
[0696] Under hydrogen (20 atm), a mixture of diethyl furan-3,4-dicarboxylate (1.00 g, 4.72 mmol) and 5%Rh/C (3.04 g, 0.0472 mmol, contain 68% water) in methanol (20 mL) was stirred at 40 °C for 2 hours. The resulting mixture was filtered over celite, and the filter cake was washed with methanol. The combined filtrate was concentrated under vacuum to afford the title compound (800 mg crude) as a light yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 217. [0697] Step 2: (Tetrahydrofuran-3,4-diyl)dimethanol (mixture of cis isomers)
Figure imgf000207_0001
[0698] To a solution of diethyl tetrahydrofuran-3,4-dicarboxylate (800 mg, crude) in tetrahydrofuran (10 mL) was added LiAlH4 (2.5M solution in tetrahydrofuran, 4.5 mL, 11.3 mmol) dropwise at 0 °C, and the mixture was stirred for 1 hour at 0 °C. The reaction was then quenched with Na2SO4.10H2O and filtered over celite. The filter cake was washed with tetrahydrofuran and the combined filtrate was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford 400 mg of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 133. [0699] Intermediate 25: tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl- 3-(trifluoromethyl)pyridin-4-yl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000207_0002
[0700] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000207_0003
[0701] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- (methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (1.00 g, 2.08 mmol, intermediate 5/step 2), (6-(bis(4- methoxybenzyl)amino)-2-methyl-3-(trifluoromethyl)pyridin-4-yl)boronic acid (1.44 g, 3.12 mmol, intermediate 16), K3PO4 (1.5M in H2O, 7 mL, 10.5 mmol) and cataCXium A Pd G3 (303 mg, 0.416 mmol) in tetrahydrofuran (35 mL) was stirred at 60 °C for 2 hours. The reaction mixture was diluted with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-70% ethyl acetate in petroleum ether) to afford the title compound (1.03 g, 57% yield) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 862. [0702] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000208_0001
[0703] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (250 mg, 0.290 mmol) in ethyl acetate (5 mL) was added m-CPBA (125 mg, 0.726 mmol) at 0 °C, and the mixture was stirred at room temperature for 1 hour. The reaction was quenched with saturated aq. Na2S2O3 solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-60% ethyl acetate in petroleum ether) to afford the title compound (170 mg, 66% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 894. [0704] Intermediate 26: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro- 3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((1-(hydroxymethyl) cyclopropyl) methoxy)-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate
[0705] Step 1: tert-Butyl (5S,5aS,6S,9R)-12-((1-(((tert-butyldimethylsilyl) oxy) methyl) cyclopropyl) methoxy)-2-chloro-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab] heptalene-14-carboxylate
Figure imgf000209_0001
[0706] To a solution of (1-(((tert-butyldimethylsilyl) oxy) methyl) cyclopropyl) methanol (842 mg, 3.89 mmol) in tetrahydrofuran (10 mL) was added NaH (60% dispersion in mineral oil, 390 mg, 9.75 mmol) at 0 °C in 3 portions and stirred for 30 minutes at room temperature. Then tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (1.00 g, 1.95 mmol, intermediate 6) was added and stirred for 2 hours at room temperature. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-20% EtOAc in petroleum ether) to afford the title compound (800 mg, 63% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 650. [0707] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-12-((1-(((tert-butyldimethylsilyl) oxy) methyl) cyclopropyl) methoxy)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate [0708] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-12-((1-(((tert- butyldimethylsilyl)oxy)methyl)cyclopropyl)methoxy)-2-chloro-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (800 mg, 1.23 mmol), (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)boronic acid (1.17 g, 2.45 mmol, intermediate 4), K3PO4 (1.5M in H2O, 4 mL, 6.00 mmol) and cataCXium A Pd G3 (179 mg, 0.246 mmol) in tetrahydrofuran (20 mL) was stirred for 3 hours at 60 °C. The reaction mixture was diluted with water and extracted with EtOAc. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (1.20 g, 93% yield) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 1047. [0709] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-12-((1-(hydroxymethyl) cyclopropyl) methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate
Figure imgf000210_0001
[0710] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-12-((1-(((tert-butyldimethylsilyl) oxy) methyl) cyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate (1.20 g, 1.15 mmol) in tetrahydrofuran (10 mL) was added TBAF (1M solution in tetrahydrofuran, 2.3 mL) at room temperature and stirred for 1 hour. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (1.00 g, 93.2% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 933. 1H NMR (300 MHz, DMSO-d6, ppm) δ 7.16 (d, J = 8.0 Hz, 4H), 6.86 (d, J = 8.1 Hz, 4H), 6.78 – 6.46 (m, 1H), 5.15 (d, J = 13.1 Hz, 1H), 4.71 – 4.48 (m, 2H), 4.48 – 4.20 (m, 5H), 4.19 – 3.85 (m, 3H), 3.71 (s, 6H), 3.49 – 3.34 (m, 2H), 3.05 (d, J = 13.3 Hz, 1H), 2.35 (s, 3H), 1.96 – 1.61 (m, 4H), 1.54 – 1.39 (m, 12H), 0.62 – 0.40 (m, 4H). [0711] Intermediate 27: (1-(((tert-Butyldiphenylsilyl) oxy) methyl)-2,2-difluorocyclopropyl) methanol
Figure imgf000211_0001
[0712] To a solution of (2,2-difluorocyclopropane-1,1-diyl) dimethanol (200 mg, 1.45 mmol) and imidazole (197 mg, 2.90 mmol) in dichloromethane (10 mL) was added TBDPSCl (398 mg, 1.45 mmol) at 0 °C and stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-10% EtOAc in petroleum ether) to afford the title compound (320 mg, 58.7% yield) as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 377. [0713] Intermediates 28 & 29: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4- fluoro-3-methyl-2-(trifluoromethyl) phenyl)-12-((2,2-difluoro-1-(hydroxymethyl) cyclopropyl) methoxy) -1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho [1,8-ab] heptalene-14-carboxylate (two diastereomers)
Figure imgf000211_0002
[0714] Step 1: tert-Butyl (5S,5aS,6S,9R)-12-((1-(((tert-butyldiphenylsilyl) oxy) methyl)-2,2- difluorocyclopropyl) methoxy)-2-chloro-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate [0715] To a solution of (1-(((tert-butyldiphenylsilyl) oxy) methyl)-2,2-difluorocyclopropyl) methanol (800 mg, 2.12 mmol, intermediate 27) in tetrahydrofuran (40 mL) was added NaH (60% dispersion in mineral oil, 424 mg, 10.6 mmol) at 0°C, and the mixture was stirred for 30 minutes at room temperature. Then tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12-(methylsulfonyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate (546 mg, 1.06 mmol, intermediate 6) was added and stirred for 1 hour at room temperature. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-20% EtOAc in petroleum ether) to afford the title compound (566 mg, 99% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 811. [0716] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2-difluorocyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (two isomers)
Figure imgf000212_0001
[0717] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-12-((1-(((tert- butyldiphenylsilyl)oxy)methyl)-2,2-difluorocyclopropyl)methoxy)-2-chloro-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (1.70 g, 2.10 mmol), (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)boronic acid (3.01 g, 6.30 mmol, intermediate 4), K3PO4 (1.5M aqueous solution, 7 mL, 10.5 mmol) and cataCXium A Pd G3 (320 mg, 0.440 mmol) in tetrahydrofuran (35 mL) stirred for 3 hours at 60 °C. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-30% EtOAc in petroleum ether) to afford a mixture of isomers (2.40 g) as a yellow solid. The two diastereomers were separated by Chiral-Prep-SFC with the following conditions: (Column: (S, S)-Whelk-O 15μm Kromasil 3*25 cm, 5 μm; Mobile Phase A: CO2, Mobile Phase B: IPA(0.1% 2M NH3-MEOH); Flow rate: 100 mL/min; Gradient: isocratic 50% B; Column Temperature(oC): 35; Back Pressure(bar): 100; Wavelength: 220 nm; RT1(min): 5.53; RT2(min): 6.6; Sample Solvent: ACN; Injection Volume: 1.9 mL; Number Of Runs: 7) to afford isomer 1 (1.10 g, 43% yield, the faster peak) and isomer 2 (1.04 g, 41% yield, the slower peak) as white solids. LC-MS: (ESI, m/z): [M+H]+ = 1208. [0718] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-12-((2,2-difluoro-1-(hydroxymethyl) cyclopropyl) methoxy)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (two isomers)
Figure imgf000213_0001
intermediate 28 intermediate 29 from faster peak of previous step from slower peak of previous step [0719] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (1.10 g, 0.911 mmol, isomer 1 of last step) in tetrahydrofuran (30 mL) was added TBAF (1M solution in tetrahydrofuran, 3 mL, 3.00 mmol) and stirred for 2 hours at room temperature. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-50% EtOAc in petroleum ether) to afford the title compound (810 mg, 91.8% yield, intermediate 28) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 969. [0720] Analogous to method described as above, intermediate 29 (730 mg, 87.5% yield) was prepared from isomer 2 of last step as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 969. [0721] Both intermediates 28 and 29 are expected to be mixtures of C2 epimers. [0722] Intermediates 30 & 31: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4- fluoro-3-methyl-2-(trifluoromethyl)phenyl)-12-((2,2-difluoro-1- (hydroxymethyl)cyclopropyl)methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (two isomers)
Figure imgf000214_0001
[0723] Step 1: tert-Butyl (5R,5aS,6S,9R)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-2-chloro-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000214_0002
[0724] To a solution of tert-butyl (5R,5aS,6S,9R)-2-chloro-1-fluoro-12-(methylsulfonyl)-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (500 mg, 0.880 mmol, intermediate 14) and (1- (((tert-butyldiphenylsilyl)oxy)methyl)-2,2-difluorocyclopropyl)methanol (497 mg, 1.32 mmol, intermediate 27) in toluene (3 mL) was added tBuONa (169 mg, 1.76 mmol) at 0 °C and stirred for 1 hour at room temperature. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-100% EtOAc in petroleum ether) to afford the title compound (640 mg, 84.1% yield) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 865. [0725] Step 2: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (two isomers)
Figure imgf000215_0001
[0726] Under nitrogen, a solution of tert-butyl (5R,5aS,6S,9R)-12-((1-(((tert- butyldiphenylsilyl)oxy)methyl)-2,2-difluorocyclopropyl)methoxy)-2-chloro-1-fluoro-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (640 mg, 0.740 mmol), (5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)boronic acid (530 mg, 1.11 mmol), K3PO4 (1.5M aqueous solution, 2.5 mL, 3.75 mmol) and cataCXium A Pd G3 (108 mg, 0.148 mmol) in THF (12.5 mL) was stirred for 3 hours at 60 °C. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford a mixture (840 mg) as a light brown solid. The two diastereomers were separated by Chiral-Prep-SFC with the following conditions: (Column:( (S, S)-WHELK-O1-Kromasil, 5*25 cm, 10 μm; Mobile Phase A: CO2, Mobile Phase B: IPA; Flow rate: 90 mL/min; Gradient: isocratic 35% B; Column Temperature(°C): 35; Back Pressure(bar): 100; Wavelength: 220 nm; RT1(min): 18.95; RT2(min): 21.17; Sample Solvent: MEOH; Injection Volume: 1 mL; Number Of Runs: 40) to afford isomer 1 (270 mg, 28.9% yield, the faster peak) and isomer 2 (250 mg, 26.8% yield, the slower peak) as white solids. LC-MS: (ESI, m/z): [M+H]+ = 1262. [0727] Step 3: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((2,2-difluoro-1-(hydroxymethyl)cyclopropyl)methoxy)-1-fluoro-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (two isomers) [0728] To a solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (200 mg, 0.158 mmol, isomer 1 of last step) in tetrahydrofuran (4 mL) was added TBAF (1M solution in tetrahydrofuran, 0.5 mL, 0.500 mmol) and stirred for 2 hours at room temperature. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (120 mg, 74.2% yield, intermediate 30) as a light brown solid. LC-MS: (ESI, m/z): [M+H]+ = 1023. [0729] Analogous to method described as above, intermediate 31 (110 mg, 68.1% yield) was prepared from isomer 2 of last step (200 mg, 0.158 mmol) as a light brown solid. LC-MS: (ESI, m/z): [M+H]+ = 1023. [0730] Both intermediates 30 and 31 are expected to be mixtures of C2 epimers. [0731] Intermediate 32: 3-(Dimethylamino)-2,2-difluoropropan-1-ol TsOH salt
Figure imgf000216_0001
[0732] A mixture of dimethylamine (2M solution in THF, 0.52 mL), 5,5-difluoro-1,3,2- dioxathiane 2,2-dioxide (100 mg, 0.570 mmol) and K2CO3 (50.5 mg, 0.370 mmol) in acetonitrile (2 mL) was stirred for 4 hours at 80 °C. The mixture was cooled to ambient temperature and filtered. To the filtrate was added a solution of pTsOH.H2O (110 mg, 0.580 mmol) in water (1 mL) and stirred for 2 hours at 80 °C. The solvent was concentrated under vacuum to afford the title compound (130 mg, crude) as a yellow solid. LC-MS: (ESI, m/z): [M-TsOH+H]+ = 140. The crude was used for next step without further purification. [0733] Intermediate 33: 3-Fluoro-N,N-bis(4-methoxybenzyl)-5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)-4-(trifluoromethyl)aniline [0734] Step 1: 3-Bromo-5-fluoro-4-iodo-N,N-bis(4-methoxybenzyl)aniline
Figure imgf000217_0001
[0735] To a solution of 3-bromo-5-fluoro-N,N-bis[(4-methoxyphenyl)methyl]aniline (0.600 g, 1.39 mmol) and NIS (484 mg, 2.16 mmol) in DMF (5 mL) was added TsOH (29.0 mg, 0.170 mmol). The resulting mixture was stirred for 1 h at room temperature. The reaction was quenched with Na2S2O3 aqueous solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-25% ethyl acetate / petroleum ether) to yield 200 mg (25.5% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 556. [0736] Step 2: 3-Bromo-5-fluoro-N,N-bis(4-methoxybenzyl)-4-(trifluoromethyl)aniline
Figure imgf000217_0002
[0737] Under nitrogen, to a solution of 3-bromo-5-fluoro-4-iodo-N,N-bis[(4-methoxyphenyl) methyl] aniline (0.10 g, 0.18 mmol) and CuI (46.0 mg, 0.240 mmol) in DMF (1 mL) was added methyl 2,2-difluoro-2-(fluorosulfonyl)acetate (0.16 mL, 1.19 mmol) at room temperature. The resulting solution was stirred at 90 °C for 2 h. The reaction mixture was diluted with EtOAc and washed with brine. The organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-25% ethyl acetate / petroleum ether) to yield 125 mg (crude) of the title compound as a light yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 498. [0738] Step 3: 3-Fluoro-N,N-bis(4-methoxybenzyl)-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2- yl)-4-(trifluoromethyl)aniline
Figure imgf000217_0003
[0739] Under nitrogen, a solution of 3-bromo-5-fluoro-N,N-bis[(4-methoxyphenyl)methyl]-4- (trifluoromethyl)aniline (129 mg, 0.260 mmol), PdCl2(dppf) (19 mg, 0.030 mmol), KOAc (76.0 mg, 0.780 mmol) and Pin2B2 (198 mg, 0.780 mmol) in 1,4-dioxane (2 mL) was stirred at 110 °C overnight. The reaction mixture was diluted with EtOAc and washed with brine. The organic layer was dried over anhydrous sodium sulfate and concentrated under reduced pressure. The residue was purified by reverse phase chromatography (solvent gradient: 0-60% ACN in water (0.05% NH4HCO3)) to yield 0.050 g (35% yield) of the title compound as a colourless oil. LC-MS: (ESI, m/z): [M+H]+= 546. [0740] Intermediate 34: N,N-Bis(4-methoxybenzyl)-4-methyl-6-(tributylstannyl)-5- (trifluoromethyl) pyridin-2-amine
Figure imgf000218_0001
[0741] Step 1: 6-Bromo-N,N-bis(4-methoxybenzyl)-4-methyl-5-(trifluoromethyl)pyridin-2-amine
Figure imgf000218_0002
[0742] Under nitrogen, a solution of 6-bromo-4-methyl-5-(trifluoromethyl)pyridin-2-amine (14.0 g, 54.9 mmol) in N,N-dimethylformamide (300 mL) was added 60% NaH (6.58 g, 165 mmol) at 0 °C. The resulting solution was stirred for 1 h at room temperature. The reaction was recooled to 0 °C, and PMB-Cl (21.4 g, 137 mmol) was added. The reaction was warmed to room temperature for 1 h. The reaction was quenched with saturated aqueous ammonium chloride solution, extracted with EtOAc (3 × 500 mL). The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-20% ethyl acetate/petroleum ether) to afford the title compound (23 g, 85% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 495/497; 1H NMR (400 MHz, DMSO-d6, ppm) δ 7.19 (d, J = 8.3 Hz, 4H), 6.93 – 6.85 (m, 4H), 6.65 (s, 1H), 4.67 (s, 4H), 3.73 (s, 6H), 2.31 (q, J = 3.3 Hz, 3H). [0743] Step 2: N,N-Bis(4-methoxybenzyl)-4-methyl-6-(tributylstannyl)-5-(trifluoromethyl) pyridin-2-amine
Figure imgf000218_0003
[0744] Under nitrogen, a solution of 6-bromo-N,N-bis(4-methoxybenzyl)-4-methyl-5- (trifluoromethyl)pyridin-2-amine (1.51 g, 3.05 mmol), Sn2(n-Bu)6 (2.65 mg, 4.57 mmol), Pd2(dba)3 (279 mg, 0.300 mmol), PCy3 (170 mg, 0.610 mmol) and LiCl (641 mg, 15.3 mmol) in 1,4-dioxane (15 mL) was stirred for 2 h at 110 °C. The reaction mixture was cooled to room temperature, diluted with water (35 mL), and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on neutral Al2O3 eluting with EtOAc/petroleum ether (0 - 8 %) to afford the title compound (1.01 g, 46.8% yield) as a colorless syrup. The product is not stable for long term storage and used immediately. LC-MS: (ESI, m/z): [M+H]+ = 707. [0745] Intermediate 35: N,N-Bis(4-methoxybenzyl)-4-methyl-6-(tributylstannyl)pyrimidin-2- amine
Figure imgf000219_0001
[0746] Step 1: 4-Bromo-N,N-bis(4-methoxybenzyl)-6-methylpyrimidin-2-amine
Figure imgf000219_0002
[0747] Under nitrogen, a solution of 4-bromo-6-methyl-pyrimidin-2-amine (2.50 g, 13.3 mmol) in DMF (25 mL) was added NaH (1.60 g, 40.0 mmol) at 0 °C and warmed to room temperature for 0.5 h. PMBCl (5.20 g, 33.1 mmol) was then added. After 2 h, the solution was quenched with saturated aqueous NH4Cl solution and extracted with EtOAc. The combined organic extracts were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-20% EtOAc / petroleum ether) to afford 4.20 (73.8% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 428. [0748] Step 2: N,N-Bis(4-methoxybenzyl)-4-methyl-6-(tributylstannyl)pyrimidin-2-amine
Figure imgf000219_0003
[0749] Under nitrogen, a solution of 4-bromo-N,N-bis(4-methoxybenzyl)-6-methylpyrimidin-2- amine (0.500 g, 1.17 mmol), Sn2(n-Bu)6 (1.02 g, 1.76 mmol), Pd2(dba)3 (107 mg, 0.120 mmol), PCy3 (65.6 mg, 0.230 mmol) and LiCl (246 mg, 5.85 mmol) in 1,4-dioxane (5 mL) was heated at 120 °C. After 2 h, the solution was cooled to room temperature, diluted with water and extracted with ethyl acetate. The combined organic extracts were washed with brine, dried over anhydrous sodium sulfate, and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-30% EtOAc / petroleum ether) to afford 375 mg (50.3% yield) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 640. [0750] Intermediate 36: N, N-Dimethyl-3-(trifluoromethyl)azetidin-3-amine hydrochloride
Figure imgf000220_0001
[0751] Step 1: tert-Butyl 3-(dimethylamino)-3-(trifluoromethyl) azetidine-1-carboxylate
Figure imgf000220_0002
[0752] A solution of tert-butyl 3-amino-3-(trifluoromethyl)azetidine-1-carboxylate (150.1 mg, 0.625 mmol) and formaldehyde (253.6 mg, 3.13 mmol, 37% in water) in methanol (5 mL) was stirred at room temperature. After 1 h, sodium cyanoborohydride (78.7 mg, 1.25 mmol) was added. After another 16 h, the reaction was diluted with water and extracted with EtOAc. The combined organic extracts were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-30% EtOAc / petroleum ether) to afford 152 mg (90.6% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 269. [0753] Step 2: N, N-Dimethyl-3-(trifluoromethyl) azetidin-3-amine hydrochloride salt
Figure imgf000220_0003
[0754] To a solution of tert-butyl 3-(dimethylamino)-3-(trifluoromethyl)azetidine-1-carboxylate (150 mg, 0.559 mmol) in dichloromethane (3 mL) was added hydrogen chloride (3 mL, 4.0 M in 1,4-dioxane) at room temperature. After 1 h, the reaction was concentrated under vacuum to afford 108 mg (crude) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 169. The crude product was used without further purification. [0755] Intermediate 37: N-(2,2-Difluoroethyl)-N-methylazetidin-3-amine hydrochloride
Figure imgf000220_0004
[0756] Step 1: tert-Butyl 3-((2,2-difluoroethyl) (methyl) amino) azetidine-1-carboxylate
Figure imgf000220_0005
[0757] To a solution of tert-butyl 3-(methylamino) azetidine-1-carboxylate (500 mg, 2.69 mmol) and Et3N (815 mg, 8.07 mmol) in THF (5 mL) was added 2,2-difluoroethyl trifluoromethanesulfonate (690 mg, 3.22 mmol). The solution was stirred at room temperature for 1 h. The solution was concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-5% MeOH / DCM) to afford 605 mg (90% yield) of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M-tBu]+ = 195.1H NMR (400 MHz, CDCl3, ppm): δ 6.15 – 5.60 (m, 1H), 3.96 (dd, J = 8.9, 7.2 Hz, 2H), 3.80 (dd, J = 8.9, 5.3 Hz, 2H), 3.50 – 3.33 (m, 1H), 2.84 – 2.62 (m, 2H), 2.35 (s, 3H), 1.46 (s, 9H). [0758] Step 2: N-(2,2-Difluoroethyl)-N-methylazetidin-3-amine hydrochloride
Figure imgf000221_0001
[0759] To a solution of tert-butyl 3-((2,2-difluoroethyl) (methyl)amino) azetidine-1-carboxylate (69.1 mg, 0.280 mmol) in DCM (1.5 mL) was added HCl/1,4-dioxane (1 mL, 4 M). The solution was stirred at room temperature for 2 h. The solution was concentrated under vacuum to afford 75.3 mg (crude) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 151. The crude was used for next step without further purification. [0760] Intermediate 38: 3-(methoxymethyl)-N, N-dimethylazetidin-3-amine trifluoroacetate
Figure imgf000221_0002
[0761] Step 1: tert-Butyl 3-(dimethylamino)-3-(methoxymethyl) azetidine-1-carboxylate
Figure imgf000221_0003
[0762] To a solution of tert-butyl 3-amino-3-(hydroxymethyl) azetidine-1-carboxylate (500 mg, 2.47 mmol) in tetrahydrofuran (10 mL) was added NaH (60% dispersion in mineral oil, 198 mg, 4.94 mmol) in portions at 0°C and stirred at room temperature for 30 minutes. Then Me2SO4 (1.56 g, 12.4mmol) was added and stirred for 2 hours at room temperature. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (190 mg, 31.4% yield) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 245. [0763] Step 2: 3-(methoxymethyl)-N, N-dimethylazetidin-3-amine trifluoroacetate
Figure imgf000222_0001
[0764] To a solution of tert-butyl 3-(dimethylamino)-3-(methoxymethyl) azetidine-1-carboxylate (190 mg, 0.776 mmol) in HFIP (20 mL) was added 2,2,2-trifluoroacetic acid (1 mL) and stirred for 1 hour at room temperature. The solvent was concentrated under vacuum to afford the title compound (290 mg, crude) as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 145. The crude was used for next step without further purification. [0765] Intermediate 39: 4-(3-Methylazetidin-3-yl) morpholine hydrochloride
Figure imgf000222_0002
[0766] Step 1: 4-(1-Benzhydryl-3-methylazetidin-3-yl) morpholine
Figure imgf000222_0003
[0767] A solution of 1-benzhydryl-3-methylazetidin-3-yl methanesulfonate (200 mg, 0.604 mmol) and morpholine (525 mg, 6.04 mmol) in iPrOH (5 ml) was stirred for 1 hour at 70 °C. The solvent was concentrated under vacuum. The residue was purified by reverse phase flash chromatography on pre-packed C18 column (gradient: 0-100% CH3CN in water (0.05% NH4HCO3)) to afford the title compound (160 mg, 82.1% yield) as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 323. [0768] Step 2: 4-(3-Methylazetidin-3-yl) morpholine hydrochloride
Figure imgf000222_0004
[0769] Under hydrogen, a solution of 4-(1-benzhydryl-3-methylazetidin-3-yl) morpholine (160 mg, 0.495 mmol), 20%Pd(OH)2/C (69.5 mg, 0.0495 mmol, contain 50% water) and HCl (1M aqueous solution, 2 mL) in ethanol (10 mL) was stirred overnight at room temperature. The resulting mixture was filtered. The filter cake was washed with ethanol. The combined filtrates were concentrated under vacuum to afford the title compound (130 mg, crude) as a yellow solid. LC-MS: (ESI, m/z): [M +H]+ = 157. The crude was used for next step without further purification. [0770] Intermediate 40: 5-Methyl-8-oxa-2,5-diazaspiro [3.5] nonane [0771] Step 1: 2-((9H-Fluoren-9-yl) methyl) 5-(tert-butyl) 8-oxa-2,5-diazaspiro[3.5]nonane-2,5- dicarboxylate
Figure imgf000223_0001
[0772] To a solution of tert-butyl 8-oxa-2,5-diazaspiro [3.5] nonane-5-carboxylate hydrochloride (200 mg, 0.755 mmol) in dichloromethane (5 mL) was added DIPEA (196 mg, 1.51 mmol). Then FmocCl (234 mg, 0.906 mmol) was added at 0 °C and stirred for 1 hour at room temperature. The reaction mixture was diluted with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-60% ethyl acetate in petroleum ether) to afford the title compound (330 mg, 96.9% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+Na]+ = 473. [0773] Step 2: (9H-Fluoren-9-yl) methyl 8-oxa-2,5-diazaspiro [3.5] nonane-2-carboxylate trifluoroacetate
Figure imgf000223_0002
[0774] To a solution of 2-((9H-fluoren-9-yl) methyl) 5-(tert-butyl) 8-oxa-2,5-diazaspiro [3.5] nonane-2,5-dicarboxylate (330 mg, 0.732 mmol) in HFIP (20 mL) was added 2,2,2-trifluoroacetic acid (1 mL) and stirred for 30 minutes at room temperature. The solvent was concentrated under vacuum to afford the title compound (400 mg, crude) as a colorless solid. LC-MS: (ESI, m/z): [M- TFA+H]+ = 351. [0775] Step 3: (9H-Fluoren-9-yl) methyl 5-methyl-8-oxa-2,5-diazaspiro [3.5] nonane-2- carboxylate
Figure imgf000223_0003
[0776] To a mixture of (9H-Fluoren-9-yl) methyl 8-oxa-2,5-diazaspiro [3.5] nonane-2-carboxylate trifluoroacetate (400 mg, crude) and K2CO3 (357 mg, 2.58 mmol) in N, N-dimethylacetamide (10 mL) was added MeI (122 mg, 0.861 mmol) and stirred for 2 hours at room temperature. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by reverse phase flash chromatography on pre-packed C18 column (gradient: 0-100% CH3CN in water (0.05% NH4HCO3)) to afford the title compound (80.0 mg, 30% yield over two steps) as a light yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 365. [0777] Step 4: 5-Methyl-8-oxa-2,5-diazaspiro [3.5] nonane
Figure imgf000224_0001
[0778] To a solution of (9H-fluoren-9-yl) methyl 5-methyl-8-oxa-2,5-diazaspiro [3.5] nonane-2- carboxylate (30.0 mg, 0.0822 mmol) in tetrahydrofuran (1 mL) was added TBAF (1M solution in tetrahydrofuran, 0.25 mL) and stirred for 2 hours at room temperature. The solvent was concentrated under vacuum to afford the title compound (50.0 mg, crude) as a colorless solid. LC- MS: (ESI, m/z): [M+H]+ = 143. The crude was used for next step without further purification. [0779] Intermediate 41: 6-(allylsulfonyl)-N,N-bis(4-methoxybenzyl)-4-methyl-5- (trifluoromethyl)pyridin-2-amine
Figure imgf000224_0002
[0780] Step 1: 6-(Allylthio)-N,N-bis(4-methoxybenzyl)-4-methyl-5-(trifluoromethyl)pyridin-2- amine
Figure imgf000224_0003
[0781] Under nitrogen, to a solution of allyl mercaptan (3.74 g, 50.5 mmol) and K2CO3 (2.79 g, 20.2 mmol) in DMF (20 mL) was added 6-bromo-N,N-bis[(4-methoxyphenyl)methyl]-4-methyl-5- (trifluoromethyl)pyridin-2-amine (5.01 g, 10.1 mmol). The solution was stirred at room temperature overnight and diluted with acetonitrile (20 ml). The solid was filtered off. The filtrate was concentrated under reduced pressure to afford 5.05 g (crude) of the title compound as dark red oil which was used for next step without further purification. LC-MS: (ESI, m/z): [M+H]+ = 489. [0782] Step 2: 6-(Allylsulfonyl)-N, N-bis(4-methoxybenzyl)-4-methyl-5-(trifluoromethyl)pyridin-2 amine
Figure imgf000225_0001
[0783] To a solution of 6-allylsulfanyl-N,N-bis[(4-methoxyphenyl)methyl]-4-methyl-5- (trifluoromethyl)pyridin-2-amine (5.05 g, 10.3 mmol) in DCM (150 mL) was added mCPBA (14.3 g, 82.7 mmol). The reaction mixture was stirred at room temperature overnight, quenched with saturated NaHCO3 aqueous solution (100 mL) and extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by silica gel (gradient: 0%-65% ethyl acetate/petroleum ether) to afford 1.70 g (31.6 % yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+ H]+ = 521. 1H NMR (400 MHz, DMSO-d6, ppm) δ 7.16 (d, J = 8.6 Hz, 4H), 7.01 (s, 1H), 6.90 (d, J = 8.7 Hz, 4H), 5.61 (ddt, J = 18.8, 9.4, 7.1 Hz, 1H), 5.30 (s, 1H), 5.27 (dd, J = 6.0, 1.7 Hz, 1H), 4.76 (s, 4H), 4.15 (d, J = 7.2 Hz, 2H), 3.72 (s, 6H), 2.38 (s, 3H). [0784] Intermediate 42: (Tetrahydrofuran-3,3-diyl)dimethanol
Figure imgf000225_0002
[0785] Step 1: Dimethyl dihydrofuran-3,3(2H)-dicarboxylate
Figure imgf000225_0003
[0786] Under nitrogen, to a solution of dimethyl malonate (1.73 mL, 15.1 mmol) in THF (20 mL) was added NaH (1.21 g, 30.3 mmol, 60% in oil) at 0℃. The resulting solution was stirred for 1 h at 0℃. Then 1-chloro-2-(chloromethoxy)ethane (2.35 g, 18.2 mmol) was added at 0℃, and the mixture was stirred at room temperature for 5 hours. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-50% EtOAc / petroleum ether) to afford 323 mg (11.3% yield) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 189. [0787] Step 2: (Tetrahydrofuran-3,3-diyl)dimethanol [0788] Under nitrogen, to a solution of dimethyl dihydrofuran-3,3(2H)-dicarboxylate (323 mg, 1.72 mmol) in THF (4 mL) was added LiAlH4 (1.38 mL, 2.5 M in THF) at 0℃. The solution was stirred at 0℃ for 3 hours. The reaction was quenched with Na2SO4▪10H2O. After filtration, the filtrate was concentrated under vacuum to afford 70 mg (crude) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 133. The crude product was used for next step without further purification. [0789] Intermediate 43: (1-(Methoxymethyl)-2-oxabicyclo[2.1.1]hexan-4-yl)methanol
Figure imgf000226_0001
[0790] Step 1: tert-Butyl 1-(methoxymethyl)-2-oxabicyclo[2.1.1]hexane-4-carboxylate
Figure imgf000226_0002
[0791] Under nitrogen, to a solution of tert-butyl 1-(hydroxymethyl)-2-oxabicyclo[2.1.1]hexane-4- carboxylate (200 mg, 0.933 mmol) in THF (6 mL) was added NaH (112 mg, 2.80 mmol, 60% in oil) at 0℃, and the mixture was stirred at room temperature for 0.5 h. Then CH3I (260 mg, 1.83 mmol) was added at 0℃ and stirred at room temperature for 1.5 h. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to afford 200 mg (crude) of the title compound as a yellow oil. LCMS: (ESI, m/z): [M-56]+ = 173. The crude product was used for next step without further purification. [0792] Step 2: (1-(Methoxymethyl)-2-oxabicyclo[2.1.1]hexan-4-yl)methanol
Figure imgf000226_0003
[0793] Under nitrogen, to a solution of tert-butyl 1-(methoxymethyl)-2-oxabicyclo[2.1.1]hexane- 4-carboxylate (65.0 mg, 0.284 mmol) in THF (5 mL) was added LiAlH4 (0.54 mL, 1 M in THF) at 0oC and stirred at room temperature for 0.5 h. The reaction was quenched with Na2SO4▪10H2O solid. After filtration, the filtrate was concentrated under vacuum to afford 54 mg (crude) of the title compound as a yellow solid. The crude product was used for next step without further purification. [0794] Intermediate 44: 4-(Hydroxymethyl)tetrahydrofuran-3-ol (mixture of cis) [0795] Step 1: 4-(Hydroxymethyl)tetrahydrofuran-3-ol (mixture of trans)
Figure imgf000227_0001
[0796] Under nitrogen, to a solution of methyl 4-oxotetrahydrofuran-3-carboxylate (1.44 g, 9.99 mmol) in EtOH (15 mL) was added NaBH4 (1.89 g, 49.7 mmol) at -30°C and stirred at -30oC for 30 minutes, and then the solution was warmed to room temperature and stirred for 18 hours. The reaction was quenched with HCl (1 N) and concentrated under vacuum. The crude product was purified by flash chromatography on silica gel (gradient: 0%-12% MeOH / DCM) to afford 332 mg (28.1% yield) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 119. [0797] Step 2: 4-(Hydroxymethyl)tetrahydrofuran-3-ol (mixture of cis)
Figure imgf000227_0002
[0798] A solution of 4-(hydroxymethyl)tetrahydrofuran-3-ol (59.5 mg, 0.504 mmol), methylboronic acid (37.4 mg, 0.625 mmol), diphenyl disulfide (54.5 mg, 0.252 mmol), tetrabutylphosphonium decatungstate (8.5 mg, 2.50 μmol) in ACN (5 mL) was irradiated (365nm LED) at room temperature for 24 hours. Then (1S,2S,3R,5S)-(+)-pinanediol (128 mg, 0.755 mmol) and K2CO3 (345 mg, 2.52 mmol) were added. The resulting suspension was rapidly stirred for 3 hours at room temperature in air. After filtration, the filtrate was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-15% MeOH / DCM) to afford 17.1 mg (28.6% yield) of the title compound as a colorless oil. LCMS: (ESI, m/z): [M+H]+ = 119. [0799] Intermediate 45: 4-(Hydroxymethyl)-3-methyloxazolidin-2-one
Figure imgf000227_0003
[0800] To a mixture of 4-(hydroxymethyl)oxazolidin-2-one (117 mg, 1.00 mmol) and Cs2CO3 (650 mg, 2.00 mmol) in N,N-dimethylformamide (5 mL) was added CH3I (170 mg, 1.20 mmol) at room temperature and stirred for 3 hours. The reaction mixture was diluted with ethyl acetate and filtered. The filtrate was concentrated under vacuum to afford the title compound (168 mg, crude) as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 132. The crude product was used for next step without further purification. [0801] Intermediate 46: 2-(2-(Methoxycarbonyl)azetidin-2-yl)acetic acid (TFA salt)
Figure imgf000228_0001
[0802] Step 1: 1-(tert-Butyl) 2-methyl 2-(2-(tert-butoxy)-2-oxoethyl)azetidine-1,2-dicarboxylate
Figure imgf000228_0002
[0803] Under nitrogen, to a solution of 1-tert-butyl 2-methyl azetidine-1,2-dicarboxylate (5.00 g, 23.2 mmol) in THF (30 mL) was added LDA (15.1 mL, 2.0 M in THF) at -70 oC. The solution was stirred 10 min at -70 oC and then added tert-butyl 2-bromoacetate (4.58 g, 25.6 mmol). The resulting solution was stirred for 2 h at -70 oC. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-45% EtOAc / petroleum ether) to afford 1.10 g (19.3% yield) of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M+H] + = 330. [0804] Step 2: 2-(2-(Methoxycarbonyl)azetidin-2-yl)acetic acid (TFA salt)
Figure imgf000228_0003
[0805] A solution of 1-(tert-butyl) 2-methyl 2-(2-(tert-butoxy)-2-oxoethyl)azetidine-1,2- dicarboxylate (390 mg, 1.18 mmol) in TFA (3mL) was added and stirred at room temperature for 5 hours. The solvent was concentrated under vacuum to afford 350 mg (crude) of the title compound as a brown oil. The crude product was used for next step without further purification. LC-MS: (ESI, m/z): [M+H] + = 174. The crude product was used for next step without further purification. [0806] Intermediate 47: 5-(Benzyloxy)-1-azaspiro[3.3]heptane [0807] Step 1: 2-(1-Amino-2-(benzyloxy)cyclobutyl)acetic acid
Figure imgf000229_0001
[0808] To a solution of 2-(benzyloxy)cyclobutan-1-one (4.00 g, 22.7 mmol) and malonic acid (2.36 g, 22.7 mmol) in t-BuOH (40 mL) was added NH4OAc (2.45 mg, 31.8 mmol) at room temperature. The resulting solution was stirred for 26 h at 85℃. The reaction mixture was cooled to room temperature. After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by C18 column (solvent gradient: 0-23% MeOH in water (0.05% NH4HCO3)) to afford 3.1 g (58.0% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 236. [0809] Step 2: 5-(Benzyloxy)-1-azaspiro[3.3]heptan-2-one
Figure imgf000229_0002
[0810] A solution of 2-(1-amino-2-(benzyloxy)cyclobutyl)acetic acid (3.10 g, 13.2 mmol), 2- chloro-1-methylpyridinium iodide (3.70 g, 14.5 mmol) and Et3N (3.07 g, 30.3 mmol) in ACN (40 mL) was stirred at 80℃ overnight. The reaction mixture was cooled to room temperature. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-60% EtOAc / petroleum ether) to afford 113 mg (3.9 % yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 218. [0811] Step 3: 5-(Benzyloxy)-1-azaspiro[3.3]heptane
Figure imgf000229_0003
[0812] Under nitrogen, to a solution of 5-(benzyloxy)-1-azaspiro[3.3]heptan-2-one (113 mg, 0.520 mmol) in THF (1 mL) was added LiAlH4 (1.04 mL, 1 M in THF) at room temperature. The resulting solution was stirred for 1 h at 60℃. The reaction mixture was cooled to room temperature. The reaction was quenched with Na2SO4.10H2O. After filtration, the filtrate was concentrated under vacuum to afford 99 mg (crude) as yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 204. The crude product was used for next step without further purification. [0813] Intermediate 48: Methyl 2-(hydroxymethyl)azetidine-2-carboxylate HCl salt
Figure imgf000230_0001
[0814] Step 1: 1-(tert-Butyl) 2-methyl 2-(hydroxymethyl)azetidine-1,2-dicarboxylate
Figure imgf000230_0002
[0815] Under nitrogen, to a solution of 1-tert-butyl 2-methyl azetidine-1,2-dicarboxylate (5.00 g, 23.2 mmol) in THF (10 mL) was added LDA (15.1 mL, 2.0 M in THF) at -70℃ and the solution was stirred for additional 0.5 h at -70℃. Then (CH2O)n (2.31 g, 25.6 mmol) was added. The resulting solution was stirred at -70℃ for 1 hour. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0% - 45% EtOAc / petroleum ether) to afford 1.11 g (19.3% yield) of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M-56+H] + = 190. [0816] Step 2: Methyl 2-(hydroxymethyl)azetidine-2-carboxylate HCl salt
Figure imgf000230_0003
[0817] To a solution of 1-(tert-butyl) 2-methyl 2-(hydroxymethyl)azetidine-1,2-dicarboxylate (500 mg, 2.04 mmol) in DCM (10 mL) was added HCl/1,4-dioxane (1.5 mL, 4 M). The solution was stirred at room temperature for 5 hours. The solvent was concentrated under vacuum to afford 450 mg (crude) of the title compound as a brown solid. LC-MS: (ESI, m/z): [M+H] + = 146. The crude product was used for next step without further purification. [0818] Intermediate 49: ((2R,3R)-3-(Methylthio)azetidin-2-yl)methanol HCl salt [0819] Step 1: tert-Butyl (2R,3S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3-(((trifluoromethyl) sulfonyl)oxy)azetidine-1-carboxylate
Figure imgf000231_0001
[0820] Under nitrogen, to a solution of tert-butyl (2R,3S)-2-(((tert-butyldimethylsilyl) oxy) methyl) -3-hydroxyazetidine-1-carboxylate (1.0 g, 3.15 mmol) in DCM (12 mL) was added 2,6- lutidine (1.01 g, 9.45 mmol) and Tf2O (1.07 g, 3.78 mmol) at -40 ℃. The solution was stirred at - 40 ℃ for 0.5 h and at room temperature for 2 h. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-15% EtOAc / petroleum ether) to afford 640 mg, (45.2% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 450. [0821] Step 2: tert-Butyl (2R,3R)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3- (methylthio)azetidine-1-carboxylate
Figure imgf000231_0002
[0822] A solution of tert-butyl (2R,3S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3- (((trifluoromethyl)sulfonyl)oxy)azetidine-1-carboxylatee (300 mg, 0.667 mmol) and NaSMe (93.4 mg, 1.33 mmol) in DMF (5 mL) was stirred at room temperature for 1 hour. The resulting solution was partitioned between water and EtOAc. The separated organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-20% EtOAc / petroleum ether) to afford 190 mg (81.9% yield) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 348. [0823] Step 3: ((2R,3R)-3-(Methylthio)azetidin-2-yl)methanol HCl salt [0824] To a solution of tert-butyl (2R,3R)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3- (methylthio)azetidine-1-carboxylate (180 mg, 0.517 mmol) in DCM (2 mL) was added HCl/1,4- dioxane (2.00 mL, 4 M) at room temperature. The resulting solution was stirred for 1 h at room temperature. The solvent was concentrated under vacuum to yield 107 mg (crude) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 134. The crude product was used for next step without further purification. [0825] Intermediate 50: ((2S,3R)-3-(1H-1,2,4-Triazol-1-yl)azetidin-2-yl)methanol hydrochloride
Figure imgf000232_0001
[0826] Step 1: tert-Butyl (2S,3R)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3-(1H-1,2,4-triazol-1- yl)azetidine-1-carboxylate
Figure imgf000232_0002
[0827] A solution of tert-butyl (2R,3S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3- (((trifluoromethyl)sulfonyl)oxy)azetidine-1-carboxylate (135 mg, 0.301 mmol, intermediate 49, step 1), 1H-1,2,4-triazole (27.1 mg, 0.393 mmol) and Cs2CO3 (196 mg, 0.601 mmol) in DMF (2.5 mL) was stirred at room temperature for 1 h. The resulting solution was partitioned between water and EtOAc. The separated organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-70% EtOAc / petroleum ether) to afford 108 mg (97.5% yield) of the title compound as a yellow oil. LC- MS: (ESI, m/z): [M+H]+ = 369. [0828] Step 2: tert-Butyl (2S,3R)-2-(hydroxymethyl)-3-(1H-1,2,4-triazol-1-yl)azetidine-1- carboxylate
Figure imgf000232_0003
[0829] To a solution of tert-butyl (2S,3R)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3-(1H-1,2,4- triazol-1-yl)azetidine-1-carboxylate (108 mg, 0.293 mmol) in THF (2.5 mL) was added TBAF (0.89 mL, 1 M in THF). The solution was stirred at room temperature for 1 h. The resulting solution was partitioned between water and EtOAc. The separated organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-10% MeOH / DCM) to afford 73.2 mg (98.1% yield) of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 255. [0830] Step 3: ((2S,3R)-3-(1H-1,2,4-Triazol-1-yl)azetidin-2-yl)methanol hydrochloride
Figure imgf000233_0001
[0831] To a solution of tert-butyl (2S,3R)-2-(hydroxymethyl)-3-(1H-1,2,4-triazol-1-yl)azetidine-1- carboxylate (68.1 mg, 0.268 mmol) in DCM (1.5 mL) was added HCl/1,4-dioxane (1.5 mL, 4 M). The solution was stirred at room temperature for 1 h. The solution was concentrated under vacuum to afford 66.2 mg (crude) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 155. The crude product was used for next step without further purification. [0832] Intermediate 51: (2S)-2-(((tert-Butyldimethylsilyl)oxy)methyl)azetidine-3-carbonitrile trifluoroacetate
Figure imgf000233_0002
[0833] Step 1: tert-Butyl (2S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3-cyanoazetidine-1- carboxylate
Figure imgf000233_0003
[0834] A solution of tert-butyl (2R,3S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3- (((trifluoromethyl)sulfonyl)oxy)azetidine-1-carboxylate (310 mg, 0.690 mmol, intermediate 49, step 1) and NaCN (102 mg, 2.07 mmol) in DMF (3 mL) was stirred at 60 °C for 1.5 h. The resulting solution was partitioned between water and EtOAc. The separated organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-30% EtOAc / petroleum ether) to afford 183 mg (81.3% yield) of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 327. [0835] Step 2: (2S)-2-(((tert-Butyldimethylsilyl)oxy)methyl)azetidine-3-carbonitrile trifluoroacetate
Figure imgf000234_0001
[0836] A solution of tert-butyl (2S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3-cyanoazetidine-1- carboxylate (134 mg, 0.410 mmol) in TFA (3 mL) was stirred at room temperature for 5 min. The solution was concentrated under vacuum to afford 231 mg (crude) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 227. The crude product was used for next step without further purification. [0837] Intermediate 52: (2-(Difluoromethyl)azetidin-2-yl)methanol TFA salt
Figure imgf000234_0002
[0838] Step 1: 1-( tert-Butyl) 2-methyl 2-(difluoromethyl) azetidine-1,2-dicarboxylate
Figure imgf000234_0003
[0839] Under nitrogen, to a solution of 1-(tert-butyl) 2-methyl azetidine-1,2-dicarboxylate (5.00 g, 23.2 mmol) in THF (50 mL) was added LiHMDS (34.8 mL, 1 M in THF) at -78 oC. The solution was stirred for 2 h at -78 oC. Then fluoroform (16.3 g, 232 mmol)) was bubbled to the mixture at - 78 oC. The resulting solution was warmed to room temperature and stirred for 2 h. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-45% EtOAc / petroleum ether) to afford 2.41 g (39.3% yield) of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M+H] + = 210. [0840] Step 2: tert-Butyl 2-(difluoromethyl)-2-(hydroxymethyl)azetidine-1-carboxylate
Figure imgf000234_0004
[0841] To a solution of 1-( tert-butyl) 2-methyl 2-(difluoromethyl)azetidine-1,2-dicarboxylate (1.00 g, 4.08 mmol) in THF (2 mL) was added LiALH4 (4.89 mL, 1 M in THF) at 0°C and the solution was stirred at room temperature for 2 hours. The reaction was quenched with Na2SO4▪10H2O. After filtration, the filtrate was concentrated under vacuum to afford 650 mg (crude) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H] + = 182. The crude product was used for next step without further purification. [0842] Step 3: (2-(Difluoromethyl)azetidin-2-yl)methanol TFA salt
Figure imgf000235_0001
[0843] To a solution of tert-butyl 2-(difluoromethyl)-2-(hydroxymethyl)azetidine-1-carboxylate (600 mg, 2.53 mmol) in DCM (10 mL) was added TFA (1 mL). The resulting solution was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum to afford 350 mg (crude) of the title compound as a brown oil. LC-MS: (ESI, m/z): [M+H] + = 138. The crude product was used for next step without further purification. [0844] Intermediate 53: 2-((2S,4S)-4-(Hydroxymethyl)azetidin-2-yl)acetonitrile TFA salt
Figure imgf000235_0002
[0845] Step 1: tert-Butyl (2S,4S)-2-((benzoyloxy)methyl)-4-(hydroxymethyl)azetidine-1- carboxylate
Figure imgf000235_0003
[0846] Under nitrogen, to a solution of tert-butyl rac-(2S,4S)-2,4-bis(hydroxymethyl)azetidine-1- carboxylate (2.00 g, 9.21 mmol) and DMAP (225 mg, 1.84 mmol) in dichloromethane (40 mL) was added DIPEA (3.72 g, 28.8 mmol) and BzCl (1.42 g, 10.1 mmol) at 0℃. The solution was stirred at room temperature for 2 hours. The reaction was quenched with aq. NaHCO3 and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-50% EtOAc/ in petroleum ether) to afford 1.4 g (47.3% yield) of the title compound as a yellow oil. LC- MS: (ESI, m/z): [M+H]+ = 322. [0847] Step 2: tert-Butyl (2S,4S)-2-((benzoyloxy)methyl)-4-(bromomethyl)azetidine-1-carboxylate
Figure imgf000236_0001
[0848] To a solution of tert-butyl (2S,4S)-2-(benzoyloxymethyl)-4-(hydroxymethyl)azetidine-1- carboxylate (700 mg, 2.18 mmol) and PPh3 (1.74 g, 6.63 mmol) in dichloromethane (70 mL) was added CBr4 (973 mg, 2.93 mmol). The solution was stirred at room temperature for 2 hours. The reaction was quenched with water, extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-50% EtOAc in petroleum ether) to afford 730 mg (87.2% yield) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 384. [0849] Step 3: tert-Butyl (2S,4S)-2-((benzoyloxy)methyl)-4-(cyanomethyl)azetidine-1-carboxylate
Figure imgf000236_0002
[0850] Under nitrogen, a solution of tert-butyl (2S,4S)-2-((benzoyloxy)methyl)-4-(bromomethyl) azetidine-1-carboxylate (730 mg, 1.90 mmol) and NaCN (512 mg, 10.4 mmol) in N,N- dimethylformamide (7 mL) was stirred at 30℃ for 16 hours. The reaction was quenched with aq. FeSO4, extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-40% EtOAc/ in petroleum ether) to afford 492 mg (78.4% yield) of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 331. [0851] Step 4: tert-Butyl (2S,4S)-2-(cyanomethyl)-4-(hydroxymethyl)azetidine-1-carboxylate
Figure imgf000236_0003
[0852] To a solution of tert-butyl (2S,4S)-2-(benzoyloxymethyl)-4-(cyanomethyl)azetidine-1- carboxylate (370 mg, 1.12 mmol) in tetrachloroethylene (6 mL) and methyl alcohol (2 mL) was added a solution of NaOH (1.26 g, 31.5 mmol) in water (2 mL) at room temperature. The solution was stirred at room temperature for 1 hour. The solution was diluted with water, extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to afford 252 mg (crude) of the title compound as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 227. [0853] Step 5: 2-((2S,4S)-4-(Hydroxymethyl)azetidin-2-yl)acetonitrile TFA salt
Figure imgf000237_0001
[0854] A solution of tert-butyl (2S,4S)-2-(cyanomethyl)-4-(hydroxymethyl)azetidine-1- carboxylate (252 mg, 1.11 mmol) in TFA/HFIP (6 mL, 5% TFA) was stirred at room temperature for 1.5 hours. The solution was concentrated under vacuum to afford 430 mg (crude) of the title compound as a brown oil. LC-MS: (ESI, m/z): [M+H]+ = 127. The crude was used for next step without further purification. [0855] Intermediate 54: (S)-(2-Methylazetidin-2-yl) methanol
Figure imgf000237_0002
[0856] Step 1: 2-Methylazetidine-2-carboxylic acid HCl salt
Figure imgf000237_0003
[0857] A solution of 1-(tert-butoxycarbonyl)-2-methylazetidine-2-carboxylic acid (10.0 g, 46.5 mmol) in HCl (100 mL, 4M in dioxane) was stirred for 1 hour at room temperature. The resulting mixture was concentrated under reduced pressure to afford 4.8 g (crude) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 116. [0858] Step 2: 1-((Benzyloxy)carbonyl)-2-methylazetidine-2-carboxylic acid
Figure imgf000238_0001
[0859] To a solution of 2-methylazetidine-2-carboxylic acid (5.3 g, 46.1 mmol), Et3N (31.9 mL, 230 mmol) in dichloromethane (60 mL) was added benzyl carbonochloridate (14.0 mL, 92.1 mmol) at 0 oC. The resulting mixture was stirred for 3 hours at room temperature. The resulting solution was partitioned between water and DCM. The separated organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The crude product was purified by reverse phase chromatography (gradient: 0–50 % acetonitrile in water (0.1% formic acid)) to afford 4.3 g (37.5% yield) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 250. [0860] Step 3: Benzyl (S)-2-(hydroxymethyl)-2-methylazetidine-1-carboxylate & Benzyl (R)-2- (hydroxymethyl)-2-methylazetidine-1-carboxylate
Figure imgf000238_0002
[0861] Under nitrogen, to a solution of 1-((benzyloxy)carbonyl)-2-methylazetidine-2-carboxylic acid (6.3 g, 25.3 mmol) in tetrahydrofuran (70 mL) was added borane (75.9 mL, 1M in THF) at 0 oC. The resulting mixture was stirred for 48 hours at room temperature. The reaction was quenched by MeOH and partitioned between water and EtOAc. The separated organic layers were dried over anhydrous Na2SO4 and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-60% EtOAc/ petroleum ether) to yield 3.2 g the mixture of two enantiomers as a yellow oil. The mixture was separated by Prep-chiral-SFC (Column: CHIRAL ART Amylose-SA, 3*25 cm, 5 μm; Mobile Phase A: CO2, Mobile Phase B: MeOH (0.1% 2M NH3-MeOH); Flow rate: 100 mL/min; Gradient (B%): isocratic 18% B; Back Pressure(bar): 100; Wave Length: 220 nm; RT1(min): 2.75; RT2(min): 4; Sample Solvent: MeOH; Injection Volume: 1.5 mL) to afford 1.4 g (23.5% yield) benzyl (S)-2-(hydroxymethyl)-2-methylazetidine-1- carboxylate and 1.25 g (21% yield) benzyl (R)-2-(hydroxymethyl)-2-methylazetidine-1-carboxylate as yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 236. [0862] Step 4: (S)-(2-Methylazetidin-2-yl)methanol
Figure imgf000239_0001
[0863] Under hydrogen (1 atm), a mixture of benzyl (S)-2-(hydroxymethyl)-2-methylazetidine-1- carboxylate (1.4 g, 5.96 mmol) and 10% Pd/C (632 mg, dry) in methanol (25 mL) was stirred for 1 hour at room temperature. The resulting mixture was filtered. The filtrate was concentrated under vacuum to afford 485 mg (crude) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 102. The crude product was used for the next step without further purification. [0864] Intermediate 55 & 56: tert-Butyl (1S,4S)-5-benzyl-6-cyano-2,5- diazabicyclo[2.2.1]heptane-2-carboxylate
Figure imgf000239_0002
Figure imgf000239_0005
Figure imgf000239_0006
Figure imgf000239_0003
[0865] Step 1: tert-Butyl (2S,4R)-4-hydroxy-2-(hydroxymethyl) pyrrolidine-1-carboxylate
Figure imgf000239_0004
[0866] Under nitrogen, to a solution of 1-(tert-butyl) 2-methyl (2S,4R)-4-hydroxypyrrolidine-1,2- dicarboxylate (30.1 g, 123 mmol) in THF (500 mL) was added LiAlH4 (58.9 mL, 2.5M in THF) at 0oC. The resulting solution was stirred for 2 hours at room temperature. The reaction was quenched with Na2SO4▪10H2O. After filtration, the filtrate was concentrated under reduced pressure to afford 15.6 g (crude) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 218. The crude product was used for next step without further purification. [0867] Step 2: tert-Butyl (2S,4R)-2-(((tert-butyldimethylsilyl) oxy) methyl)-4-hydroxypyrrolidine- 1-carboxylate
Figure imgf000240_0001
[0868] Under nitrogen, a solution of tert-butyl (2S,4R)-4-hydroxy-2-(hydroxymethyl) pyrrolidine- 1-carboxylate (40.5 g, 186 mmol) in DCM (300 mL) was added 2,6-lutidine (20.1 g, 187 mmol) at room temperature. The reaction system was cooled to -78oC and TBDMSOTf (39.4 g, 149 mmol) was added. The reaction was stirred at -78oC for 1 h. The reaction was diluted with water and extracted with DCM. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-40% EtOAc in petroleum ether) to afford 18.9 g (30.6% yield) of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 332. [0869] Step 3: tert-Butyl (2S,4R)-2-(((tert-butyldimethylsilyl) oxy) methyl)-4-(tosyloxy) pyrrolidine-1-carboxylate
Figure imgf000240_0002
[0870] A solution of tert-butyl (2S,4R)-2-(((tert-butyldimethylsilyl) oxy) methyl)-4- hydroxypyrrolidine-1-carboxylate (32.6 g, 98.3 mmol) in pyridine (400 mL) was added TsCl (56.1 g, 295 mmol) at room temperature and stirred at room temperature for 16 hours. The resulting mixture was diluted with ethyl acetate and washed with water. The separated organic layer was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-50% EtOAc in petroleum ether) to afford 36.2 g (75.8% yield) of the title compound as a yellow oil. LC- MS: (ESI, m/z): [M+H]+ = 486. [0871] Step 4: tert-Butyl (2S,4R)-2-(hydroxymethyl)-4-(tosyloxy) pyrrolidine-1-carboxylate [0872] A solution of tert-butyl (2S,4R)-2-(((tert-butyldimethylsilyl)oxy)methyl)-4- (tosyloxy)pyrrolidine-1-carboxylate (36.2 g, 74.5 mmol) in THF (300 mL) was added TBAF (212 mL, 1M in THF) and stirred at room temperature for 3 hours. The resulting reaction was diluted with EtOAc, washed with water. The organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-80% EtOAc in petroleum ether) to afford 15.1 g (54.5% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 372. [0873] Step 5: tert-Butyl (2S,4R)-2-formyl-4-(tosyloxy)pyrrolidine-1-carboxylate
Figure imgf000241_0001
[0874] Under nitrogen, to a solution of DMSO (16.9 g, 216 mmol) in DCM (500 mL) was added (COCl)2 (13.8 g, 108 mmol) at -70oC. The resulting solution was stirred for 0.5 hours at -70oC. Then tert-butyl (2S,4R)-2-(hydroxymethyl)-4-(tosyloxy) pyrrolidine-1-carboxylate (20.2 g, 54.3 mmol) was added and stirred at -70oC for 1 hour. Then Et3N (33.1 g, 328 mmol) was added. The reaction system was warmed to room temperature gradually and stirred additional 1h. The solution was diluted with water and extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to afford 18.2 g (crude) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 370. [0875] Step 6: tert-Butyl (2S,4R)-2-((S)-(benzylamino) (cyano)methyl)-4-(tosyloxy) pyrrolidine-1- carboxylate
Figure imgf000241_0002
[0876] To a solution of tert-butyl (2S,4R)-2-formyl-4-(tosyloxy) pyrrolidine-1-carboxylate (27.6 g, 74.7 mmol) in THF (300 mL) was added diethyl phosphorocyanidate (14.6 g, 89.5 mmol) and BnNH2 (19.9 g, 186 mmol). The resulting solution was stirred at room temperature for 16 hours. The solution was diluted with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-50% EtOAc in petroleum ether) to afford 22.5 g (62% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 486. [0877] Step 7: tert-Butyl (1S,4S)-5-benzyl-6-cyano-2,5-diazabicyclo [2.2.1]heptane-2-carboxylate
Figure imgf000242_0001
[0878] A solution of tert-butyl (2S,4R)-2-((S)-(benzylamino) (cyano)methyl)-4-(tosyloxy) pyrrolidine-1-carboxylate (22.3 g, 45.9 mmol) and DIPEA (29.5 g, 228 mmol) in DCE (300 mL) was stirred at 85°C for 18 hours. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-40% EtOAc in petroleum ether) to afford 3.71 g (25.8% yield) of intermediate 55 (the faster peak) and 6.21 g of intermediate 56 (the slower peak) as yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 314. [0879] Intermediate 55: 1H NMR (500 MHz, DMSO- d6, ppm) δ 7.44 – 7.21 (m, 5H), 4.40 (d, J = 16.3 Hz, 1H), 3.88 (d, J = 13.5 Hz, 1H), 3.74 (dd, J = 13.5, 4.4 Hz, 1H), 3.67 – 3.58 (m, 2H), 3.48 (d, J = 9.5 Hz, 1H), 3.10 (dd, J = 16.1, 10.5 Hz, 1H), 1.97 (d, J = 10.1 Hz, 1H), 1.89 (dd, J = 15.9, 10.4 Hz, 1H), 1.44 (s, 9H). [0880] Intermediate 56: 1H NMR (500 MHz, DMSO- d6, ppm) δ 7.44 – 7.23 (m, 5H), 4.52 (d, J = 42.4 Hz, 1H), 3.88 – 3.79 (m, 2H), 3.69 (d, J = 13.5 Hz, 1H), 3.51 (s, 1H), 3.30 – 3.13 (m, 2H), 1.88 (d, J = 10.4 Hz, 1H), 1.85 – 1.70 (m, 1H), 1.41 (s, 9H). [0881] Intermediate 57, 58, 59 & 60: tert-Butyl (1S,4S)-6-(1-hydroxyethyl)-2,5-diazabicyclo [2.2.1] heptane-2-carboxylate
Figure imgf000243_0002
[0882] Step 1: 2-(tert-Butyl) 6-methyl (1S,4S)-5-benzyl-2,5-diazabicyclo [2.2.1] heptane-2,6- dicarboxylate
Figure imgf000243_0001
[0883] A solution of tert-butyl (1S,4S)-5-benzyl-6-cyano-2,5-diazabicyclo [2.2.1] heptane-2- carboxylate (6.21 g, 19.8 mmol, intermediate 56) in MeOH (100 mL) was added MeONa (5.66 g, 104 mmol) and the solution was stirred at 60°C for 6 hours. Then HCl (62 mL, 3 N) was added at 0°C and stirred at 0°C for 2 hours. The reaction was quenched with aq. NaHCO 3 . The solution was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-50% EtOAc in petroleum ether) to afford 3.32 g (48.4% yield) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 347. [0884] Step 2: tert-Butyl (1S,4S)-5-benzyl-6-(hydroxymethyl)-2,5-diazabicyclo [2.2.1] heptane-2- carboxylate
Figure imgf000244_0001
[0885] Under nitrogen, to a solution of 2-(tert-butyl) 6-methyl (1S,4S)-5-benzyl-2,5-diazabicyclo [2.2.1] heptane-2,6-dicarboxylate (3.31 g, 9.55 mmol) in THF (100 mL) was added LiAlH4 (5.2 mL, 2.5M in THF) at 0oC. The resulting solution was stirred for 1 h at 0oC. The reaction was quenched by Na2SO4▪10H2O. After filtration, the filtrate was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-90% EtOAc in petroleum ether) to afford 2.89 g (crude) of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 319. The crude product was used for next step without further purification. [0886] Step 3: tert-Butyl (1S,4S)-5-benzyl-6-formyl-2,5-diazabicyclo [2.2.1] heptane-2- carboxylate
Figure imgf000244_0002
[0887] Under nitrogen, to a solution of DMSO (2.83 g, 36.2 mmol) in DCM (100 mL) was added (COCl)2 (2.31 g, 18.2mmol) at -70oC. The resulting solution was stirred for 0.5 h at -70oC. Then tert-butyl (1S,4S)-5-benzyl-6-(hydroxymethyl)-2,5-diazabicyclo [2.2.1] heptane-2-carboxylate (2.89 g, 9.08 mmol) was added and stirred at -70oC for 1 hour. Then Et3N (5.49 g, 54.3 mmol) was added and stirred at room temperature for 1h. The solution was diluted with water and extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to afford 2.81 g (crude) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 317. The crude product was used for next step without further purification. [0888] Step 4: tert-Butyl (1S,4S)-5-benzyl-6-(1-hydroxyethyl)-2,5-diazabicyclo[2.2.1]heptane-2- carboxylate [0889] Under nitrogen, to a solution of tert-butyl (1S,4S)-5-benzyl-6-formyl-2,5-diazabicyclo [2.2.1] heptane-2-carboxylate (1.01 g, 3.19 mmol) in THF (50 mL) was added MeMgBr (3.2 mL, 3 M in THF) at -78oC. The solution was stirred for 1 h at -78oC. The reaction was quenched with NH4Cl aqueous and the mixture was extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-50% EtOAc / petroleum ether) to afford 403 mg (38% yield, the faster peak) and 326 mg (30.7% yield, the slower peak) of the title compounds as yellow solids. LCMS (ESI): [M+H]+ = 333. [0890] Step 5: tert-Butyl (1S,4S)-6-(1-hydroxyethyl)-2,5-diazabicyclo[2.2.1]heptane-2-carboxylate
Figure imgf000245_0001
[0891] Under H2 (1 atm), a solution of tert-butyl (1S,4S)-5-benzyl-6-(1-hydroxyethyl)-2,5- diazabicyclo[2.2.1]heptane-2-carboxylate (2.21 g, 6.65 mmol) (from the faster peak of last step) in MeOH (50 mL) was added Pd(OH)2/C (1.21 g, 20%) at room temperature. The resulting solution was stirred for 16 hours at 50oC. After filtration, the filtrate was concentrated under reduced pressure to afford 1.41 g (crude, intermediate 57) of the title compound as a yellow oil. LCMS (ESI): [M+H]+ = 243. [0892] Analogous to the method described as above, intermediate 58 was synthesized from the slower peak of step 4. [0893] Analogous to the method described as intermediate 57 and intermediate 58, intermediate 59 and intermediate 60 were synthesized from intermediate 55. [0894] Intermediate 61: tert-Butyl (1S,4S)-6-(2,2,2-trifluoro-1-hydroxyethyl)-2,5-diazabicyclo [2.2.1] heptane-2-carboxylate
Figure imgf000246_0001
[0895] Step 1: tert-Butyl (1S,4S)-5-benzyl-6-(2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl)-2,5- diazabicyclo [2.2.1]heptane-2-carboxylate
Figure imgf000246_0002
[0896] Under nitrogen, to a solution of tert-butyl (1S,4S)-5-benzyl-6-formyl-2,5-diazabicyclo [2.2.1] heptane-2-carboxylate (2.81 g, 8.88 mmol, intermediate 57 & 58, step 3) in DMF (80 mL) was added LiOAc (588 mg, 8.91 mmol) and trimethyl(trifluoromethyl)silane (2.52 g, 17.7 mmol). The solution was stirred at room temperature for 1.5 hours. The reaction system was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum to afford 3.81 g (crude) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 459. The crude product was used for next step without further purification. [0897] Step 2: tert-Butyl (1S,4S)-5-benzyl-6-(2,2,2-trifluoro-1-hydroxyethyl)-2,5-diazabicyclo [2.2.1] heptane-2-carboxylate
Figure imgf000247_0001
[0898] To a solution of tert-butyl (1S,4S)-5-benzyl-6-(2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl)-2,5-diazabicyclo [2.2.1] heptane-2-carboxylate (3.81 g, 8.31 mmol) in THF (100 mL) was added TBAF (5.7 mL, 1 M in THF) and stirred at room temperature for 1 hour. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-50 % EtOAc in petroleum ether) to afford 1.31 g the faster peak and 1.25 g the slower peak as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 387. [0899] The faster peak: 1H NMR (500 MHz, DMSO- d6, ppm) δ 7.32 (d, J = 6.7 Hz, 4H), 7.23 (t, J = 6.6 Hz, 1H), 6.10 (dd, J = 29.5, 6.3 Hz, 1H), 4.53 (s, 1H), 3.57 (t, J = 12.3 Hz, 3H), 3.15 (d, J = 25.3 Hz, 2H), 3.02 – 2.70 (m, 2H), 1.88 (t, J = 11.8 Hz, 1H), 1.55 – 1.49 (m, 1H), 1.41 (s, 9H). [0900] The slower peak: 1H NMR (500 MHz, DMSO- d6, ppm) 7.46 – 7.21 (m, 5H), 6.33 – 5.80 (m, 1H), 4.32 (d, J = 25.4 Hz, 1H), 3.85- 3.80 (m, 2H), 3.58 (dd, J = 19.1, 13.2 Hz, 1H), 3.28 – 3.04 (m, 2H), 2.93 (dd, J = 35.7, 9.0 Hz, 2H), 1.95 (d, J = 10.1 Hz, 1H), 1.56 (d, J = 10.2 Hz, 1H), 1.39 (s, 9H). [0901] Step 3: tert-Butyl (1S,4S)-6-(2,2,2-trifluoro-1-hydroxyethyl)-2,5- diazabicyclo[2.2.1]heptane-2-carboxylate
Figure imgf000247_0002
[0902] Under H2 (4 atm), to a solution of tert-butyl (1S,4S)-5-benzyl-6-(2,2,2-trifluoro-1- hydroxyethyl)-2,5-diazabicyclo [2.2.1] heptane-2-carboxylate (1.25 g, 3.23 mmol) (the faster peak of last step) in MeOH (10 mL) was added Pd(OH)2/C (1.25 g) and the solution was stirred for 6 hours at room temperature. After filtration, the filtrate was concentrated under reduced pressure to afford 921 mg (crude) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 297. The crude product was used for next step without further purification. [0903] Intermediate 62: tert-Butyl (1S,4S)-6-(2,2,2-trifluoro-1-hydroxyethyl)-2,5-diazabicyclo [2.2.1] heptane-2-carboxylate (The other isomer of intermediate 61) [0904] Analogous to method described as above, this isomer was synthesized from the slower peak of intermediate 61, step 2. [0905] Intermediate 63: 5-((5aS,6S,9R)-12-((2-Oxabicyclo[2.1.1]hexan-4-yl)methoxy)-5- (difluoromethyl)-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000248_0001
Figure imgf000248_0002
[0906] Step 1: tert-Butyl (1R,2S,5S)-3-benzyl-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000248_0003
[0907] To a solution of tert-butyl (1R,2S,5S)-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (10.0 g, 41.2 mmol) in ACN (100 mL) was added K2CO3 (11.3 g, 82.5 mmol) and BnBr (10.5 g, 61.4 mmol) at 0 oC. The resulting solution was stirred at room temperature for 1 h. The reaction was quenched with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-70% EtOAc / petroleum ether) to afford 11.7 g (85.5% yield) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 333. [0908] Step 2: tert-Butyl (1R,2S,5S)-3-benzyl-2-formyl-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000249_0001
[0909] Under nitrogen, to a solution of tert-butyl (1R,2S,5S)-3-benzyl-2-(hydroxymethyl)-3,8- diazabicyclo [3.2.1]octane-8-carboxylate (11.7 g, 35.1 mmol) in DCM (117 mL) was added Dess- Martin periodinane (13.4 g, 31.6 mmol) at 0 oC. The resulting solution was stirred at 0 ℃ for 1 h. The reaction was quenched with aqueous Na2S2O3 solution and extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to afford 10.6 g (crude) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ =331. [0910] Step 3: tert-Butyl (1R,2S,5S)-3-benzyl-2-((S)-2,2-difluoro-1-hydroxyethyl)-3,8- diazabicyclo [3.2.1]octane-8-carboxylate (the faster peak) and tert-butyl (1R,2S,5S)-3-benzyl-2-((R)- 2,2-difluoro-1-hydroxyethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (the slower peak)
Figure imgf000249_0002
[0911] To a solution of tert-butyl (1R,2S,5S)-3-benzyl-2-formyl-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (10.1 g, 30.8 mmol) in DMF (100 mL) was added CsF (4.67 g, 30.9 mmol) and (difluoromethyl)trimethylsilane (9.53 g, 76.7 mmol). The resulting solution was stirred at 50 ℃ overnight. The reaction was diluted with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by C18 column (solvent gradient: 0-100% ACN in water (0.05% NH4HCO3) to afford 3.21 g of mixture diastereomers as a yellow oil. The mixture were separated by Chiral-Prep-SFC (Column: CHIRALPAK IG, 7*25cm, 10 μm; Mobile Phase A: CO2, Mobile Phase B: MeOH (0.1% 7M NH3-MeOH); Flow rate: 250 mL/min; Gradient (B%): isocratic 20% B; Column Temperature (oC): 35; Back Pressure (bar): 100; Wavelength: 220 nm; RT1 (min): 6.47; RT2 (min): 7.17; Injection Volume: 1.5 mL; Number Of Runs: (65) to afford 1.17 g (9.9% yield, the faster peak) and 1.80 g (15.3% yield, the slower peak) as yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 383. [0912] The faster peak: 1H NMR (300 MHz, DMSO-d6) δ 7.39 – 7.27 (m, 4H), 7.32 – 7.18 (m, 1H), 6.05 (d, J = 4.7 Hz, 1H), 5.77 (s, 1H), 5.70 (d, J = 6.0 Hz, 1H), 4.17 – 4.02 (m, 3H), 3.92 (d, J = 4.7 Hz, 1H), 3.03 (d, J = 13.3 Hz, 1H), 2.45 (d, J = 16.4 Hz, 2H), 2.22 – 1.51 (m, 4H), 1.38 (s, 9H). [0913] The slower peak: 1H NMR (300 MHz, DMSO-d6) δ 7.41 – 7.27 (m, 4H), 7.27 – 7.16 (m, 1H), 5.86 – 5.73 (m, 1H), 4.40 (d, J = 13.6 Hz, 1H), 4.14 – 3.97 (m, 1H), 3.88 (d, J = 24.5 Hz, 2H), 3.03 (d, J = 13.6 Hz, 1H), 2.56 (s, 1H), 2.40 (d, J = 11.1 Hz, 1H), 2.11 – 1.99 (m, 2H), 1.74 – 1.52 (m, 4H), 1.40 (s, 9H). [0914] Step 4: tert-Butyl (1R,2S,5S)-2-((R)-2,2-difluoro-1-hydroxyethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000250_0001
[0915] Under hydrogen (1 atm), to a solution of tert-butyl (1R,2S,5S)-3-benzyl-2-((R)-2,2- difluoro-1-hydroxyethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (500 mg, 1.31 mmol, the slower peak of last step) in MeOH (20.0 mL) was added NH3 (0.700 mL, 4.91 mmol, 7M in MeOH), Pd/C (196 mg, 0.184 mmol,10 wt%). The resulting solution was stirred at room temperature for 1.5 h. After filtration, the filtrate was concentrated under reduced pressure to afford 380 mg (crude) of the title compound as a colorless oil. LC-MS: (ESI, m/z): [M+H]+ = 293. The crude material was used for next step without further purification. [0916] Step 5: tert-Butyl (1S,2S,5R)-2-((R)-1-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)-2,2-difluoroethyl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000250_0002
[0917] Under nitrogen, to a solution of tert-butyl (1R,2S,5S)-2-((R)-2,2-difluoro-1-hydroxyethyl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (380 mg, 1.30 mmol) in THF (4.00 mL) was added NaH (311 mg, 7.77 mmol, 60% in mineral oil) at 0 ℃. The resulting solution was stirred at room temperature for 30 min. Then 5,7-dichloro-8-fluoro-2-(methylthio)pyrido[4,3-d]pyrimidin-4-ol (436 mg, 1.56 mmol, intermediate 1) was added and stirred at room temperature overnight. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to afford 610 mg (crude) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 536. The crude was used for next step without further purification. [0918] Step 6: tert-Butyl (5R,5aS,6S,9R)-2-chloro-5-(difluoromethyl)-1-fluoro-12-(methylthio)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate
Figure imgf000251_0001
[0919] A solution of tert-butyl (1S,2S,5R)-2-((R)-1-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)-2,2-difluoroethyl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (1.12 g, 2.09 mmol), DIPEA (4.04 g, 31.3 mmol) and BOPCl (2.39 g, 9.40 mmol) in DCM (11.0 mL) was stirred at room temperature overnight. The reaction was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-50% EtOAc / petroleum ether) to afford 850 mg (78.5% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 518. [0920] Step 7: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-5-(difluoromethyl)-1-fluoro-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
[0921] Under nitrogen, a solution of tert-butyl (5R,5aS,6S,9R)-2-chloro-5-(difluoromethyl)-1- fluoro-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (640 mg, 1.24 mmol), (5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)boronic acid (1.47 g, 3.09 mmol, intermediate 4), CataCXium A Pd G3 (179 mg, 0.250 mmol) and K3PO4 (2.47 mL, 3.71 mmol, 1.5 M in water) in THF (12.0 mL) was stirred at 60 ℃ for 3 h. The resulting solution was partitioned between water and EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-100% EtOAc / petroleum ether) to afford 980 mg (86.7% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 915. [0922] Step 8: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-5-(difluoromethyl)-1-fluoro-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000252_0001
[0923] To a solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-5-(difluoromethyl)-1-fluoro-12-(methylthio)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (980 mg, 1.07 mmol) in EtOAc (20.0 mL) was added m-CPBA (552 mg, 3.21 mmol) at 0oC. The resulting solution was stirred at temperature for 1 h. The reaction was quenched with saturated Na2S2O3 aqueous and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-100% EtOAc / petroleum ether) to afford 780 mg (76.9% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 947. [0924] Intermediate 64: tert-Butyl (1R,2S,5S)-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane- 8-carboxylate
Figure imgf000253_0004
Figure imgf000253_0003
Figure imgf000253_0002
Figure imgf000253_0001
Figure imgf000253_0005
Figure imgf000253_0006
Figure imgf000253_0007
[0925] Step 1: tert-Butyl (1R,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane-3-carboxylate
Figure imgf000253_0008
[0926] To a solution of tert-butyl 3,8-diazabicyclo[3.2.1]octane-3-carboxylate (50.0 g, 236 mmol) in DMF (800 mL) was added K2CO3 (65.1 g, 472 mmol) and BnBr (60.1g, 353.53 mmol). Stirred at rt for 2 hours. The reaction mixture was diluted with water and extracted with EtOAc. The combined organic phases were washed with water (500 mL×3), dried over Na2SO4 and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0~10%) to afford the title compound (69 g, 96.9% yield) as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 303. [0927] Step 2: 3-(tert-Butyl) 2-methyl (1R,2S,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane-2,3- dicarboxylate and 3-(tert-Butyl) 2-methyl (1R,2R,5S)-8-benzyl-3,8-diazabicyclo[3.2.1]octane-2,3- dicarboxylate [0928] Under N2, to a solution of tert-butyl 8-benzyl-3,8-diazabicyclo[3.2.1]octane-3-carboxylate (23.0 g, 76.06 mmol) and TMEDA (17.7 g, 152.59 mmol) in diethyl ether (500 mL) was added dropwise s-BuLi (117 mL, 1.3 M in hexane) at -78°C and stirred at -78°C for 1.5 hours. Then methyl carbonochloridate (17.9 g, 189 mmol) in 40 mL Et2O was added dropwise at -78°C. The reaction was warmed to room temperature gradually and stirred additional 16 hours. The reaction was quenched with saturated NaHCO3 (aq), diluted with water and extracted with EtOAc. The combined organic phases were dried over Na2SO4 and concentrated under vacuum. The crude product was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0~10%) to afford 16 g of racemic mixtures (mixture of cis) as yellow oil. The mixture was separated by chiral-SFC (Column: Lux® 5µm Cellulose-2, 5×25cm, 5um; Mobile Phase A: CO2, Mobile Phase B: MeOH (0.1% 2M NH3-MeOH); Flow rate:180 mL/min; Gradient:18% B; 220 nm; RT1:5.07; RT2: 5.57) to afford 5.9 g (16 mmol, 22% yield) of the faster peak and 5.6 g (15 mmol, 20% yield) of the slower peak as yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 361. [0929] Step 3: tert-Butyl (1R,2S,5S)-8-benzyl-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane-3- carboxylate
Figure imgf000254_0001
[0930] Under nitrogen, to a solution of 3-(tert-butyl) 2-methyl (1R,2S,5S)-8-benzyl-3,8- diazabicyclo[3.2.1]octane-2,3-dicarboxylate (20.0 g, 55.5 mmol, faster peak of previous operation) in THF (300 mL) was added LiAlH4 (4.20 g, 111 mmol) at 0 °C. The resulting solution was stirred for 30 mins at 0 °C and quenched with Na2SO4^10H2O. The solid was filtered off and the filtrate was concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0-20%) to afford the title compound (14.3 g, 77.5% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 333. [0931] Step 4: (6S,9R,9aS)-10-Benzylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3-one [0932] Under nitrogen, to a solution of tert-butyl 8-benzyl-4-(hydroxymethyl)-3,8- diazabicyclo[3.2.1]octane-3-carboxylate (5.1 g, 15.34 mmol) in THF (100 mL) was added NaH (1.35 g, 33.8 mmol, 60% in mineral oil) at 0 °C. The resulting solution was stirred for 3 hours at room temperature, quenched with NH4Cl (aq) and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0-40%) to afford the title compound (3.5 g, 88.3% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 259. [0933] Step 5: (6S,9R,9aS)-Hexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3-one [0934] A mixture of (6S,9R,9aS)-10-Benzylhexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3- one (10.0 g, 38.7 mmol) and Pd/C (3.0 g, 2.8 mmol, 10 wt% ) in methyl alcohol (200 mL) was stirred under an atmosphere of hydrogen at room temperature for 2 hours at room temperature. The catalyst was filtered off. The filtrate was concentrated under reduced pressure to afford 6 g crude product which was used for next step without further purification. LC-MS: (ESI, m/z): [M+H]+ = 169. [0935] Step 6: tert-Butyl (6S,9R,9aS)-3-oxohexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepine- 10-carboxylate
Figure imgf000255_0001
[0936] A solution of (6S,9R,9aS)-Hexahydro-1H,3H-6,9-epiminooxazolo[3,4-a]azepin-3-one (6.00 g, 35.7 mmol), (Boc)2O (12.6 g, 57.8 mmol) and DIPEA (10.0 g, 77.5 mmol) in dichloromethane (100 mL) was stirred at rt for 2 hours. The reaction mixture was washed with saturated sodium chloride solution. The organic phase was dried over anhydrous Na2SO4 and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0-40%) to afford the title compound 7.50 g (78.4% yield) as white solid. LC-MS: (ESI, m/z): [M+H]+ = 269. [0937] Step 7: tert-Butyl (1R,2S,5S)-2-(hydroxymethyl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate [0938] A solution of tert-Butyl (6S,9R,9aS)-3-oxohexahydro-1H,3H-6,9-epiminooxazolo[3,4- a]azepine-10-carboxylate (7.50 g, 28.0 mmol) and NaOH (16.8 g, 420 mmol) in ethanol (200 mL) and water (70 mL) was stirred at 80°C for 16 hours. A majority of EtOH was stripped off under reduced pressure. The residual solution was adjusted to pH=8 with aqueous HCl (1M) and extracted with EtOAc. The combined organic layers were dried over Na2SO4 and concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel eluting with DCM/MeOH (5/1) to afford the title compound (5 g, 73.8% yield) as an off white solid. LC-MS: (ESI, m/z): [M+H]+ = 243. 1H NMR (400 MHz, DMSO-d6, ppm) δ 4.72 - 4.57 (m, 1H), 4.02 - 3.90 (m, 2H), 3.25 - 3.15 (m, 2H), 2.82 - 2.68 (m, 2H), 2.64 - 2.53 (m, 1H), 1.85 - 1.61 (m, 3H), 1.61 - 1.47 (m, 1H), 1.41 (s, 9H). [0939] Intermediate 65: tert-Butyl (5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000256_0001
[0940] Step 1: tert -Butyl (1S,2S,5R)-2-(((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido [4,3-d]pyrimidin-5-yl)oxy)methyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000256_0002
[0941] Under nitrogen, to a solution of tert-butyl (1R,2S,5R)-2-(hydroxymethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (289 mg, 1.19 mmol, intermediate 64) in THF (20 mL) was added NaH (191 mg, 4.78 mmol, 60% in mineral oil) at 0 oC. The resulting solution was stirred for 0.5 h at room temperature. Then 5,7-dichloro-8-fluoro-2-(methylthio)pyrido[4,3-d]pyrimidin- 4(3H)-one (803 mg, 1.43 mmol, intermediate 1) was added at 0 oC and stirred for 1 hour at room temperature. The reaction was quenched aqueous NH4Cl, diluted with water and extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to afford the title compound (1.05 g crude) as a white solid which was used for next step without further purification. LC-MS: (ESI, m/z): [M+H]+ = 486. [0942] Step 2: tert -Butyl (5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000257_0001
[0943] To a solution of tert-butyl (1S,2S,5R)-2-(((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)methyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1.05 g, 2.15 mmol) in DCM (10 mL) was added DIPEA (4.16 g, 32.3 mmol) and BOPCl (2.20 g, 8.61 mmol). The resulting solution was stirred at room temperature for 2 hours, diluted with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting with EtOAc/petroleum ether (0%-40%) to afford the title compound (381 mg, 37.8% yield) as a light yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 469. Compounds [0944] Example 1 – Compound 1 (Isomer 1 & 2): (1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2-methylazetidin-2- yl)methanol (two isomers)
[0945] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(2-(hydroxymethyl)-2-methylazetidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (two isomers)
Figure imgf000258_0001
[0946] To a solution of (2-methylazetidin-2-yl) methanol 2,2,2-trifluoroacetate (237 mg, crude) and DIPEA (427 mg, 3.30 mmol) in tetrahydrofuran (5 mL) was added tert-butyl (5S,5aS,6S,9R)-2- (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (200 mg, 0.220 mmol, intermediate 5) at room temperature and stirred overnight at room temperature. The solvent was concentrated under vacuum. The residue was purified by reverse phase flash chromatography on pre-packed C18 column (gradient: 0-100% CH3CN in water (0.05% NH4HCO3)) to afford a mixture two diastereomers (130 mg, 63.3% yield) as a yellow solid. Two diastereomers were separated by Chiral-Prep-HPLC with the following conditions: (Column: OptiChiral-C9-53*25 cm, 5 μm; Mobile Phase A: Hex (0.5% 2M NH3-MeOH)--HPLC, Mobile Phase B: IPA--HPLC; Flow rate: 30 mL/min; Gradient: isocratic 50; Wavelength: 220/254 nm; RT1(min): 11.618; RT2(min): 22.827; Sample Solvent: EtOH--HPLC; Injection Volume: 1.0 mL; Number Of Runs: 5) to afford isomer 1 (30.0 mg, 15% yield, the faster peak) and isomer 2 (55.0 mg, 27% yield, the slower peak) as white solids. LC-MS: (ESI, m/z): [M+H]+ = 932. [0947] Step 2: (1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-2-methylazetidin-2-yl)methanol (two isomers)
Figure imgf000259_0001
[0948] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(2-(hydroxymethyl)-2-methylazetidin-1-yl)-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (30.0 mg, 0.0322 mmol, isomer 1 of last step) in 2,2,2-trifluoroacetic acid (10 mL) was stirred at room temperature for 1 hour. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 25% B to 45% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 8.5) to afford 1 (Isomer 1) (7.60 mg, 40% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 592. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.65 – 6.37 (m, 1H), 5.96 (s, 2H), 5.51 – 4.84 (m, 2H), 4.36 (d, J = 7.4 Hz, 1H), 4.05 – 3.66 (m, 4H), 3.65 – 3.41 (m, 2H), 3.41 – 3.36 (m, 1H), 2.95 (t, J = 14.3 Hz, 1H), 2.44 – 2.35 (m, 1H), 2.31 (s, 3H), 2.01 – 1.90 (m, 1H), 1.90 – 1.78 (m, 1H), 1.69 – 1.54 (m, 3H), 1.50 (d, J = 15.3 Hz, 3H), 1.41 (d, J = 6.5 Hz, 3H). [0949] Analogous to method described as above, 1 (Isomer 2) (9.10 mg, 26% yield) was prepared from isomer 2 of last step (55.0 mg, 0.0590 mmol) after purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 25% B to 45% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 8.7) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 592. 1H NMR (400 MHz, DMSO-d6, ppm) δ 6.67 – 6.38 (m, 1H), 5.96 (s, 2H), 5.59 – 4.88 (m, 2H), 4.48 – 4.27 (m, 1H), 3.99 – 3.77 (m, 4H), 3.77 – 3.60 (m, 1H), 3.55 – 3.43 (m, 2H), 3.39 (d, J = 5.8 Hz, 1H), 2.95 (t, J = 12.8 Hz, 1H), 2.46 – 2.20 (m, 4H), 2.02 – 1.79 (m, 2H), 1.71 – 1.52 (m, 3H), 1.49 (d, J = 10.1 Hz, 3H), 1.41 (d, J = 6.4 Hz, 3H). [0950] Each compound in Table 2 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Example 1. Table 2:
Figure imgf000260_0001
[0951] Example 2 – Compound 7 (Isomer 1 & 2): 2-(1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)azetidin-2-yl)propan-2-ol (two isomers)
[0952] Step 1: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl- 4-(trifluoromethyl)aniline
Figure imgf000261_0001
[0953] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (730 mg, 0.831 mmol, intermediate 5, step 3) in 2,2,2-trifluoroacetic acid (20 mL) was stirred at room temperature for 30 minutes. The solvent was concentrated under vacuum to afford the title compound (447 mg, crude) as a light yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 539. The crude was used for next step without further purification. [0954] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000261_0002
[0955] To a solution of 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-(methylthio)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2- yl)-3-methyl-4-(trifluoromethyl)aniline (447 mg, crude) and DIPEA (1.07 g, 8.26 mmol) in dichloromethane (20 mL) was added a solution of Boc2O (272 mg, 1.25 mmol) in dichloromethane (2 mL) at 0°C, and the mixture was stirred at room temperature for 3 hours. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford 650 mg of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 639. [0956] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000262_0001
[0957] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (650 mg, 1.02 mmol) in ethyl acetate (10 mL) was added m-CPBA (528 mg, 3.06 mmol) in portions at 0 °C, and the mixture was stirred at room temperature for 1 hour. The reaction was quenched with saturated Na2S2O3 aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-60% ethyl acetate in petroleum ether) to afford the title compound (430 mg, 63% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 671. [0958] Step 4: tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(2-(2-hydroxypropan-2-yl)azetidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (two diastereomers) [0959] To a solution of 2-(azetidin-2-yl)propan-2-ol hydrochloride (67.6 mg, 0.448 mmol) and DIPEA (145 mg, 1.12 mmol) in tetrahydrofuran (5 mL) was added tert-butyl (5S,5aS,6S,9R)-2-(5- amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (150 mg, 0.224 mmol) at room temperature and stirred for 3 hours. The solvent was concentrated under vacuum. The residue was purified by reverse phase flash chromatography on pre-packed C18 column (gradient: 0-100% CH3CN in water (0.05% NH4HCO3)) to afford a mixture of diastereomers (120 mg, 75.9% yield) as a yellow solid. Two diastereomers were separated by Chiral-Prep-HPLC with the following conditions: (Column: CHIRALPAK ID 2*25 cm, 5 μm; Mobile Phase A: (HEX: DCM=3: 1) (0.5% 2M NH3-MeOH), Mobile Phase B: IPA; Flow rate: 20 mL/min; Gradient: isocratic 7; RT1(min): 7.133; RT2(min): 8.811; Injection Volume: 0.5 mL; Number Of Runs: 18) to afford isomer 1 (40.0 mg, 25% yield, the faster peak) and isomer 2 (60.0 mg, 38% yield, the slower peak) as white solids. LC-MS: (ESI, m/z): [M+H]+ = 706. [0960] Step 5: 2-(1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)azetidin-2-yl)propan-2-ol (two isomers)
Figure imgf000263_0001
[0961] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(2-(2-hydroxypropan-2-yl)azetidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (40.0 mg, 0.0567 mmol, isomer 1 of last step) in HFIP (10 mL) was added 2,2,2- trifluoroacetic acid (0.5 mL, 6.73 mmol) at room temperature, and the mixture was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: YMC Triart C18 ExRs, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 33% B to 52% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 8.88) to afford 7 (Isomer 1) (12.5 mg, 36% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 606. 1H NMR (300 MHz, CD3OD, ppm) δ 6.67 – 6.41 (m, 1H), 5.31 (d, J = 13.2 Hz, 1H), 4.54 – 4.33 (m, 2H), 4.19 – 4.05 (m, 1H), 4.00 (d, J = 8.5 Hz, 2H), 3.62 (d, J = 5.5 Hz, 1H), 3.59 – 3.49 (m, 1H), 3.14 – 2.97 (m, 1H), 2.46 – 2.28 (m, 4H), 2.24 – 2.03 (m, 2H), 1.95 – 1.65 (m, 3H), 1.54 (d, J = 6.3 Hz, 3H), 1.30 (d, J = 5.9 Hz, 3H), 1.12 (s, 3H). [0962] Analogous to method described as above, 7 (Isomer 2) (27.7 mg, 54% yield) was prepared from isomer 2 of last step (60.0 mg, 0.0850 mmol) after purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 32% B to 52% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 9.5) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 606. 1H NMR (300 MHz, CD3OD, ppm) δ 6.69 – 6.44 (m, 1H), 5.37 (d, J = 13.2 Hz, 1H), 4.62 – 4.38 (m, 2H), 4.25 – 4.09 (m, 1H), 4.07 – 3.86 (m, 2H), 3.71 – 3.61 (m, 1H), 3.61 – 3.50 (m, 1H), 3.10 (d, J = 13.1 Hz, 1H), 2.49 – 2.26 (m, 4H), 2.26 – 1.98 (m, 2H), 1.92 – 1.68 (m, 3H), 1.56 (d, J = 6.3 Hz, 3H), 1.31 (d, J = 2.7 Hz, 3H), 1.14 (s, 3H). [0963] Example 3 – Compound 8: 5-((5S,5aS,6S,9R)-12-((2-oxabicyclo [2.1.1] hexan -1-yl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl) aniline
Figure imgf000264_0001
[0964] Step 1: tert-Butyl (5S,5aS,6S,9R)-12-(((1s,4R)-2-oxabicyclo[2.1.1]hexan-1-yl)methoxy)-2- (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000264_0002
[0965] Under nitrogen, to a solution of (2-oxabicyclo[2.1.1] hexan-1-yl)methanol (37.6 mg, 0.330 mmol) in tetrahydrofuran (5 mL) was added NaH (60%) (19.7 mg, 0.493 mmol) at 0oC. The solution was stirred at room temperature for 0.5 hour. Then tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12- (methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (150.1 mg, 0.165 mmol, intermediate 5) was added, and the mixture was stirred at room temperature for 1 hour. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-6% MeOH / DCM) to afford 145 mg (93% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 945. [0966] Step 2: 5-((5S,5aS,6S,9R)-12-((2-Oxabicyclo[2.1.1] hexan-1-yl)methoxy)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000265_0001
[0967] A solution of tert-butyl (5S,5aS,6S,9R)-12-(((1s,4R)-2-oxabicyclo [2.1.1] hexan-1-yl) methoxy) -2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate (145 mg, 0.153 mmol) in 2,2,2-trifluoroacetic acid (4 mL) was stirred at room temperature for 1 hour. The solution was concentrated under vacuum. The residue was purified by prep-HPLC with the following conditions: (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 34% B to 51% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 9.6) to afford 34.3 mg (37% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 605. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.61 – 6.46 (m, 1H), 6.03 (br, 2H), 5.11 – 5.08 (m, 1H), 4.57 – 4.51 (m, 3H), 3.97 – 3.95 (m, 1H), 3.72 (s, 2H), 3.57 – 3.55 (m, 1H), 3.45 – 3.44 (m, 1H), 3.04 – 3.02 (m, 1H), 2.94 – 2.93 (m, 1H), 2.76 – 2.74 (m, 1H), 2.32 (s, 3H), 1.85 – 1.81 (m, 3H), 1.65 – 1.53 (m, 3H), 1.47 – 1.45 (m, 2H), 1.45 (d, J = 6.0 Hz, 3H). [0968] Each compound in Table 3 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Example 3. Table 3:
Figure imgf000265_0002
Figure imgf000266_0001
Figure imgf000267_0003
[0969] Example 4 – Compound 17: 5-((5S,5aS,6S,9R)-12-(Difluoromethoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen- 2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000267_0001
[0970] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-(difluoromethoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate & tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)- 13-(difluoromethyl)-1-fluoro-5-methyl-12-oxo-5a,6,7,8,9,10,12,13-octahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000267_0002
[0972] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-oxo-5a,6,7,8,9,10,12,13-octahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (1.00 g, 1.18 mmol, intermediate 19) in DMF (10.0 mL) were added K2CO3 (357 mg, 2.59 mmol) and sodium 2- chloro-2,2-difluoroacetate (898 mg, 5.89 mmol). The solution was stirred for 1 h at 90 ℃. The reaction was diluted with EtOAc, and the organic layer was washed with water. The organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by C18 column (solvent gradient: 0-100% ACN in water (0.05% NH4HCO3)) to afford 600 mg (57% yield) of compound A and 160 mg (15% yield) of compound B as brown solid. LC-MS: (ESI, m/z): [M+H]+ = 899. [0973] Step 2: 5-((5S,5aS,6S,9R)-12-(Difluoromethoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro- 3-methyl-4-(trifluoromethyl)aniline
Figure imgf000268_0001
[0974] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-(difluoromethoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (600 mg, 0.670 mmol) in 2,2,2-trifluoroacetic acid (3.00 mL) was stirred for 20 min at room temperature. The solvent was concentrated under vacuum. The residue was purified by PREP_HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 35% B to 57% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 9.5) to afford 151 mg (40% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 559. 1H NMR (300 MHz, DMSO- d6) δ 7.79 (t, J = 72.2 Hz, 1H), 6.55 (d, J = 38.1 Hz, 1H), 6.06 (s, 2H), 5.06 (dd, J = 13.0, 2.5 Hz, 1H), 4.66 – 4.52 (m, 1H), 4.02 (d, J = 8.8 Hz, 1H), 3.56 (d, J = 5.0 Hz, 1H), 3.48 (d, J = 5.7 Hz, 1H), 3.08 (d, J = 12.8 Hz, 1H), 2.86 (s, 1H), 2.37 – 2.29 (m, 3H), 1.77 (d, J = 10.0 Hz, 1H), 1.70 – 1.46 (m, 3H), 1.46 (d, J = 6.3 Hz, 3H). [0975] Example 5 – Compound 18: 5-((5S,5aS,6S,9R)-12-(Benzyloxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2- yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
[0976] Step 1: tert-Butyl (5S,5aS,6S,9R)-13-benzyl-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-oxo-5a,6,7,8,9,10,12,13-octahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate & tert-butyl (5S,5aS,6S,9R)-12-(benzyloxy)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000269_0001
[0977] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-oxo-5a,6,7,8,9,10,12,13- octahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (300 mg, 0.354 mmol, intermediate 19) in DMF (3.00 mL) was added NaH (28.3 mg, 0.707 mmol, 60% in mineral oil) at 0 °C. The resulting solution was stirred for 30 min at room temperature. Then (bromomethyl)benzene (120 mg, 0.706 mmol) was added at 0 °C, and the mixture was stirred for 1 h at room temperature. The mixture was quenched with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-60% EtOAc / petroleum ether) to afford 225 mg (68% yield) of compound A and 80 mg (24% yield) of compound B as white solid. LCMS: (ESI, m/z): [M+H]+ = 939. [0978] Step 2: 5-((5S,5aS,6S,9R)-12-(Benzyloxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4- (trifluoromethyl)aniline
Figure imgf000270_0001
[0979] A solution of tert-butyl (5S,5aS,6S,9R)-12-(benzyloxy)-2-(5-(bis(4-methoxybenzyl)amino)- 4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate 80.0 mg, 0.0850 mmol) in 2,2,2-trifluoroacetic acid (0.500 mL) was stirred for 20 min at room temperature. Then the solvent was evaporated under vacuum. The residue was purified by PREP_HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 41% B to 63% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 9) to yield 7.30 mg (14 % yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 599. 1H NMR (300 MHz, DMSO-d6, ppm):δ 7.54 – 7.45 (m, 2H), 7.45 – 7.29 (m, 3H), 6.61 (s, 1H), 6.02 (s, 2H), 5.42 (s, 2H), 5.06 (d, J = 12.7 Hz, 1H), 4.59 – 4.48 (m, 1H), 3.95 (d, J = 8.7 Hz, 1H), 3.52 (s, 1H), 3.44 (d, J = 5.4 Hz, 1H), 2.99 (d, J = 12.8 Hz, 1H), 2.33 (s, 3H), 1.72 (d, J = 9.6 Hz, 1H), 1.59 (s, 4H), 1.44 (d, J = 6.3 Hz, 3H). [0980] Example 6 – Compound 19: Ethyl 2-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)acetate
[0981] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-(2-ethoxy-2-oxoethoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate & tert- butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-13-(2-ethoxy-2-oxoethyl)-1-fluoro-5-methyl-12-oxo-5a,6,7,8,9,10,12,13- octahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000271_0001
[0982] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-oxo-5a,6,7,8,9,10,12,13- octahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (500 mg, 0.590 mmol, intermediate 19) in N,N-dimethylformamide (5.00 mL) was added NaH (118 mg, 2.95 mmol, 60% in mineral oil) at 0℃, and the mixture was stirred for 20 min at room temperature. Then ethyl 2-bromoacetate (492 mg, 2.95 mmol) was added at 0℃, and the mixture was stirred for another 1 h at room temperature. The reaction was quenched with saturated NH4Cl aqueous, extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-70% EtOAc/petroleum ether) to afford 302 mg of compound A and 312 mg of compound B as white solids. LC-MS: (ESI, m/z): [M+H]+ = 935. [0983] Step 2: Ethyl 2-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)acetate
Figure imgf000272_0001
[0984] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-(2-ethoxy-2-oxoethoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (50.0 mg, 0.0530 mmol) in 2,2,2-trifluoroacetic acid (0.500 mL) was stirred for 30 min at room temperature. The solvent was evaporated under vacuum. The residue was purified by PREP_HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 29%B to 49%B in 10 min; Wavelength: 254nm/220nm; RT1(min): 9.67) to yield 15.2 mg (48% yield) of the title compound as a white solid. LCMS: (ESI, m/z): [M+H]+ = 595. 1H NMR (300 MHz, DMSO-d6, ppm): δ 6.54 (d, J = 38.2 Hz, 1H), 6.03 (s, 2H), 5.07 – 4.83 (m, 3H), 4.57 – 4.52 (m, 1H), 4.19 – 4.11 (m, 2H), 3.97 (d, J = 8.8 Hz, 1H), 3.49 (dd, J = 24.0, 5.3 Hz, 2H), 3.03 (d, J = 12.8 Hz, 1H), 2.96 – 2.81 (m, 1H), 2.32 (t, J = 2.7 Hz, 3H), 1.79 – 1.52 (m, 4H), 1.44 (d, J = 6.3 Hz, 3H), 1.20 (t, J = 7.1 Hz, 3H). [0985] Example 7 – Compound 20: 4-((5S,5aS,6S,9R)-12-((2-oxabicyclo-[2.1.1] hexan-4- yl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-2-yl)-6-methyl-5-(trifluoromethyl)pyridin-2-amine
Figure imgf000272_0002
[0986] Step 1: tert-Butyl (5S,5aS,6S,9R)-12-(((1S,4r)-2-oxabicyclo[2.1.1]hexan-4-yl)methoxy)-2- (6-(bis(4-methoxybenzyl)amino)-2-methyl-3-(trifluoromethyl)pyridin-4-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [0987] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (160 mg, 0.179 mmol, intermediate 25) and (2-oxabicyclo[2.1.1]hexan-4-yl)methanol (30.6 mg, 0.268 mmol) in toluene (3 mL) was added t-BuONa (34.4 mg, 0.358 mmol) at 0 °C, and the mixture was stirred at room temperature for 1 h. The resulting solution was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-70% EtOAc / petroleum ether) to afford 160 mg (96% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 928. [0988] Step 2: 4-((5S,5aS,6S,9R)-12-((2-oxabicyclo[2.1.1] hexan-4-yl)methoxy)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-6-methyl-5-(trifluoromethyl)pyridin-2-amine
Figure imgf000273_0001
[0989] A solution of tert-butyl (5S,5aS,6S,9R)-12-(((1S,4r)-2-oxabicyclo[2.1.1] hexan-4- yl)methoxy)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3-(trifluoromethyl)pyridin-4-yl)-1-fluoro- 5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (160 mg, 0.170 mmol) in TFA (5 mL) was stirred at 50 °C for 5 hours. The solution was cooled to room temperature and concentrated under vacuum. The residue was purified by PREP-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water(10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 19% B to 41% B in 10 min; Wavelength: 254nm/220nm) to afford 21.8 mg (22% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 588. 1H NMR (300 MHz, DMSO-d 6 ) δ 6.83 (s, 2H), 6.23 (s, 1H), 5.09 (d, J = 12.8 Hz, 1H), 4.66 (s, 2H), 4.61 – 4.46 (m, 2H), 3.96 (d, J = 8.9 Hz, 1H), 3.61 (s, 2H), 3.57 (s, 1H), 3.45 (d, J = 5.6 Hz, 1H), 3.03 (d, J = 12.8 Hz, 1H), 2.76 (s, 1H), 2.47 (d, J = 2.3 Hz, 3H), 1.84 (m, 3H), 1.63 (d, J = 11.6 Hz, 3H), 1.51 (m, 2H), 1.44 (d, J = 6.3 Hz, 3H). [0990] Example 8 – Compound 21: 2-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl) propan-2-ol
Figure imgf000274_0001
[0991] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-chloro-12-((1-(ethoxycarbonyl) cyclopropyl) methoxy)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate
Figure imgf000274_0002
[0992] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- (methylsulfonyl) -5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab] heptalene-14-carboxylate (200 mg, 0.390 mmol, intermediate 6) and ethyl 1- (hydroxymethyl) cyclopropane-1-carboxylate (84.2 mg, 0.583 mmol) in toluene (5 mL) was added tBuONa (74.8 mg, 0.778 mmol) at 0 °C, and the mixture was stirred for 1 hour at room temperature. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-100% ethyl acetate in petroleum ether) to afford the title compound (150 mg, 66% yield) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 579 [0993] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-12-((1-(ethoxycarbonyl)cyclopropyl)methoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [0994] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-12-((1- (ethoxycarbonyl)cyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (150 mg, 0.260 mmol), (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)boronic acid (249 mg, 0.520 mmol, intermediate 4), K3PO4 (1.5M aqueous solution, 0.9 mL,1.35 mmol) and cataCXium A Pd G3 (37.8 mg, 0.0520 mmol) in THF (4.5 mL) was stirred for 3 hours at 60 °C. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-100% ethyl acetate in petroleum ether) to afford the title compound (240 mg, 95% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 976. [0995] Step 3: Ethyl 1-((((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho [1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropane-1-carboxylate
Figure imgf000275_0001
[0996] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-12-((1-(ethoxycarbonyl) cyclopropyl) methoxy)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (150 mg, 0.154 mmol) in 2,2,2-trifluoroacetaldehyde (5 mL) was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by reverse phase chromatography (gradient: 0-100 % acetonitrile in water (0.05% NH4HCO3)) to afford the title compound (60.0 mg, 62% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 634. [0997] Step 4: 2-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl) propan-2-ol [0998] Under nitrogen, to a solution of ethyl 1-((((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropane -1-carboxylate (60.0 mg, 0.0946 mmol) in tetrahydrofuran (5 mL) was added MeLi (1.6M solution in Et2O, 0.6 mL, 0.960 mmol) dropwise at -78 °C, and the mixture was stirred for 1 hour at room temperature. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water, adjusted to pH = 5 with acetic acid and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 62 mL/min mL/min; Gradient: 17% B to 42% B in 9 min; Wavelength: 254nm/220nm; RT1(min): 9.3) to afford the title compound (7.20 mg, 12% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 621. 1H NMR (300 MHz, DMSO-d6, ppm) δ 6.69 – 6.41 (m, 1H), 6.02 (s, 2H), 5.08 (d, J = 12.7 Hz, 1H), 4.58 – 4.48 (m, 1H), 4.33 (s, 2H), 4.16 (s, 1H), 3.94 (d, J = 8.7 Hz, 1H), 3.60 – 3.52 (m, 1H), 3.49 – 3.40 (m, 1H), 3.01 (d, J = 12.7 Hz, 1H), 2.32 (s, 3H), 1.91 – 1.76 (m, 1H), 1.72 – 1.50 (m, 3H), 1.43 (d, J = 6.3 Hz, 3H), 1.21 (s, 6H), 0.82 – 0.73 (m, 2H), 0.47 – 0.38 (m, 2H). [0999] Each compound in Table 4 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Example 8. Table 4:
Figure imgf000276_0001
Figure imgf000277_0003
[1000] Example 9 – Compound 24: 3-(((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-12-yl) oxy)-2,2-difluoropropan-1-ol
Figure imgf000277_0001
[1001] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-12-(2,2-difluoro-3-hydroxypropoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14- carboxylate
Figure imgf000277_0002
[1002] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate (150 mg, 0.165 mmol, intermediate 5) and 2,2-difluoropropane-1,3-diol (37.0 mg, 0.330 mmol) in toluene (3 mL) was added tBuONa (31.7 mg, 0.330 mmol) at 0 °C, and the mixture was stirred for 1 hour at room temperature. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (120 mg, 77% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 943. [1003] Step 2: 3-(((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalen-12-yl) oxy)-2,2-difluoropropan-1-ol [1004] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-12-(2,2-difluoro-3-hydroxypropoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate (120 mg, 0.127 mmol) in 2,2,2-trifluoroacetic acid (10 mL) was stirred for 30 minutes at room temperature. The solvent was concentrated under vacuum. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (YMC Triart C18 ExRs 5um, 30*150mm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 22% B to 42% B in 12 min; Wavelength: 254nm/220nm) to afford the title compound (9.50 mg, 12% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 603. 1H NMR (300 MHz, DMSO-d6, ppm) δ 6.65 – 6.42 (m, 1H), 6.03 (s, 2H), 5.75 – 5.65 (m, 1H), 5.15 – 5.04 (m, 1H), 4.76 – 4.62 (m, 2H), 4.62 – 4.48 (m, 1H), 3.98 (d, J = 8.7 Hz, 1H), 3.85 – 3.68 (m, 2H), 3.61 – 3.49 (m, 1H), 3.46 (d, J = 5.7 Hz, 1H), 3.05 (d, J = 12.7 Hz, 1H), 2.85 (bs, 1H), 2.33 (s, 3H), 1.84 – 1.75 (m, 1H), 1.75 – 1.58 (m, 3H), 1.45 (d, J = 6.3 Hz, 3H). [1005] Each compound in Table 5 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Example 9. Table 5:
Figure imgf000278_0001
Figure imgf000279_0002
[1006] Example 10 – Compounds 33: 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-methoxy-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000279_0001
[1007] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-oxo-5a,6,7,8,9,10,12,13-octahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate [1008] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (374 mg, 0.410 mmol, intermediate 5) in tetrahydrofuran (3.00 mL) was added NaOH (164 mg, 4.11 mmol) in water (0.600 mL) at room temperature. The resulting solution was stirred for 1 h at room temperature. The reaction system was diluted with water, extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to afford 332 mg (crude) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 849. [1009] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5,13-dimethyl-12-oxo-5a,6,7,8,9,10,12,13-octahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate & tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1- fluoro-12-methoxy-5-methyl-5a,6,7,8,9,10,12,13-octahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (mixture of A and B)
Figure imgf000280_0001
[1010] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-oxo- 5a,6,7,8,9,10,12,13-octahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (120 mg, 0.141 mmol) in N, N-dimethylformamide (2.00 mL) was added NaH (8.50 mg, 0.216 mmol, 60% in mineral oil). The resulting solution was stirred for 15 min at room temperature. Then iodomethane (40.2 mg, 0.288 mmol) was added at room temperature, and the mixture was stirred for 1 h at room temperature. The reaction was quenched with water, extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified using a C18 column (solvent gradient: 0- 100% MeOH in water (0.05% NH4HCO3)) to afford 110 mg (mixture of A and B) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 863. [1011] Step 3: 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-methoxy-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-3- methyl-4-(trifluoromethyl)aniline
Figure imgf000281_0001
[1012] A solution of the mixture of A and B (110 mg, 0.127 mmol) in 2,2,2-trifluoroacetic acid (2.00 mL) was stirred for 30 min at room temperature. The solvent was evaporated under vacuum. The residue was purified by PREP_HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 23% B to 40% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 9.5) to afford 2.10 mg 33 as white solids. LC-MS: (ESI, m/z): [M+H]+ = 523. [1013] 33: 1H NMR (300 MHz, DMSO-d6) δ 6.54 (d, J = 37.7 Hz, 1H), 6.02 (s, 2H), 5.13 – 5.08 (m, 1H), 4.73 – 4.36 (m, 1H), 3.97 (s, 1H), 3.94 (s, 3H), 3.53 (d, J = 9.1 Hz, 1H), 3.44 (d, J = 5.6 Hz, 1H), 3.02 (d, J = 12.7 Hz, 1H), 2.87 (s, 1H), 2.32 (t, J = 2.6 Hz, 3H), 1.81 (d, J = 11.0 Hz, 1H), 1.64 – 1.52 (m, 3H), 1.44 (d, J = 6.3 Hz, 3H). [1014] Example 11 – Compound 34: (1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl) methanol
Figure imgf000281_0002
[1015] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-12-((1-(((tert-butyldimethylsilyl) oxy)methyl) cyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (100 mg, 0.0955 mmol, intermediate 26, step 2) in 2,2,2-trifluoroacetic acid (10 mL) was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 19*250 mm, 5μm; Flow rate: 25 mL/min; Gradient: 40% B to 50% B in 10 min; Wavelength: 254/220 nm; RT1(min): 8.8; Number Of Runs: 4) to afford the title compound (16.3 mg, 29% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 593. 1H NMR (300 MHz, DMSO- d6, ppm) δ 6.66 – 6.37 (m, 1H), 6.01 (s, 2H), 5.16 – 5.02 (m, 1H), 4.70 – 4.58 (m, 1H), 4.58 – 4.42 (m, 1H), 4.24 (s, 2H), 3.93 (d, J = 8.7 Hz, 1H), 3.59 – 3.48 (m, 1H), 3.42 (d, J = 5.5 Hz, 1H), 3.39 – 3.34 (m, 2H), 2.99 (d, J = 12.7 Hz, 1H), 2.82 – 2.68 (m, 1H), 2.30 (s, 3H), 1.88 – 1.73 (m, 1H), 1.72 – 1.48 (m, 3H), 1.42 (d, J = 6.3 Hz, 3H), 0.62 – 0.41 (m, 4H). [1016] Example 12 – Compound 35: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-((1- (methoxymethyl) cyclopropyl) methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-3-methyl-4- (trifluoromethyl)aniline
Figure imgf000282_0001
[1017] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-12-((1-(methoxymethyl) cyclopropyl) methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate
Figure imgf000282_0002
[1018] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((1-(hydroxymethyl) cyclopropyl) methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate (150 mg, 0.161 mmol, intermediate 26) in tetrahydrofuran (2 mL) was added NaH (60% dispersion in mineral oil, 12.9 mg, 0.322 mmol) at 0 °C, and the mixture was stirred for 30 minutes at room temperature. Then a solution of iodomethane (45.7 mg, 0.322 mmol) in tetrahydrofuran (1 mL) was added, and the mixture was stirred for 1 hour at room temperature. The reaction was quenched with saturated aq. NH4Cl solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (90.0 mg, 59% yield) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 947. [1019] Step 2: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-((1-(methoxymethyl) cyclopropyl) methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000283_0001
[1020] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((1-(methoxymethyl) cyclopropyl) methoxy)-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (90.0 mg, 0.0950 mmol) in 2,2,2-trifluoroacetic acid (10 mL) was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 17% B to 42% B in 9 min, 42% B; Wavelength: 254/220 nm; RT1(min): 8.9) to afford the title compound (7.40 mg, 13% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 607. 1H NMR (300 MHz, DMSO-d6, ppm) δ 6.69 – 6.37 (m, 1H), 6.00 (s, 2H), 5.14 – 5.00 (m, 1H), 4.60 – 4.45 (m, 1H), 4.25 (s, 2H), 4.01 – 3.84 (m, 1H), 3.58 – 3.49 (m, 1H), 3.42 (d, J = 5.7 Hz, 1H), 3.29 (s, 2H), 3.23 (s, 3H), 3.00 (d, J = 12.8 Hz, 1H), 2.80 (bs, 1H), 2.30 (s, 3H), 1.91 – 1.72 (m, 1H), 1.72 – 1.47 (m, 3H), 1.42 (d, J = 6.3 Hz, 3H), 0.68 – 0.47 (m, 4H). [1021] Example 13 – Compound 36: 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl) ethan-1-ol (mixture of diastereomers)
[1022] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-12-((1-formylcyclopropyl) methoxy)-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14- carboxylate
Figure imgf000284_0001
[1023] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((1-(hydroxymethyl) cyclopropyl) methoxy)-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (300 mg, 0.322 mmol, intermediate 26) and NMO (75.4 mg, 0.644 mmol) in dichloromethane (5 mL) was added TPAP (56.6 mg, 0.161 mmol) at 0 ℃, and the mixture was stirred for 1 hour at room temperature. The reaction was quenched with saturated aq. Na2S2O3 solution. The reaction mixture was diluted with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-35% ethyl acetate in petroleum ether) to afford the title compound (250 mg, 83% yield) as an off-white solid. LC-MS: (ESI, m/z): [M+H]+ = 931. [1024] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-12-((1-(1-hydroxyethyl) cyclopropyl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000285_0001
[1025] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((1-formylcyclopropyl) methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate (250 mg, 0.269 mmol) in tetrahydrofuran (2 mL) was added MeMgBr (3M solution in Et2O, 0.13 mL, 0.390 mmol) dropwise at -40 °C, and the mixture was stirred for 1 hour at room temperature. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (250 mg, 98% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 947. [1026] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((1-(1-hydroxyethyl) cyclopropyl) methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate
Figure imgf000285_0002
[1027] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((1-(1-hydroxyethyl)cyclopropyl)methoxy)-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (250 mg, 0.264 mmol) in acetonitrile (8 mL) was added a solution of CAN (1.16 g, 2.11 mmol) in water (6 mL) in 4 portions every 1 hour, and the mixture was stirred for an additional 2 hours at room temperature. The reaction was quenched with saturated aq. Na2S2O3 solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (120 mg, 64% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 707. [1028] Step 4: 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl) ethan-1-ol (mixture of diastereomers)
Figure imgf000286_0001
[1029] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-12-((1-(1-hydroxyethyl) cyclopropyl) methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate (120 mg, 0.170 mmol) in HFIP (5 mL) was added 2,2,2-trifluoroacetic acid (0.2 mL) in 2 portions, and the mixture was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: YMC Triart C18 ExRs 5um, 30*150mm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 22% B to 42% B in 12 min; Wavelength: 254nm/220nm) to afford the title compound (10.3 mg, 10% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 607. 1H NMR (300 MHz, DMSO-d6, ppm) δ 6.69 – 6.40 (m, 1H), 6.01 (s, 2H), 5.09 (d, J = 12.7 Hz, 1H), 4.58 – 4.43 (m, 3H), 4.12 (d, J = 11.4 Hz, 1H), 3.94 (d, J = 8.7 Hz, 1H), 3.65 – 3.51 (m, 2H), 3.44 (d, J = 5.6 Hz, 1H), 3.01 (d, J = 12.7 Hz, 1H), 2.82 (bs, 1H), 2.32 (s, 3H), 1.84 – 1.78 (m, 1H), 1.78 – 1.60 (m, 3H), 1.44 (d, J = 6.3 Hz, 3H), 1.12 (d, J = 6.3 Hz, 3H), 0.68 – 0.48 (m, 4H). [1030] Example 14 – Compound 37 (Isomer 1 & 2) : 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4- fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl)- 2,2,2-trifluoroethan-1-ol (two diastereomers)
[1031] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-((1-(2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl) cyclopropyl) methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate
Figure imgf000287_0001
[1032] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((1-formylcyclopropyl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (120 mg, 0.129 mmol, Example 13, step 1) and LiOAc (8.50 mg, 0.129 mmol) in N,N-dimethylformamide (2 mL) was added TMSCF3 (36.7 mg, 0.258 mmol) at 0 °C, and the mixture was stirred for 2 hours at room temperature. The reaction mixture was diluted with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-20% ethyl acetate in petroleum ether) to afford the title compound (120 mg, 87% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 1073. [1033] Step 2: 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl)-2,2,2-trifluoroethan-1-ol (two diastereomers)
Figure imgf000288_0001
[1034] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-((1-(2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl) cyclopropyl) methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate (120 mg, 0.112 mmol) in 2,2,2-trifluoroacetic acid (20 mL) was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by reverse phase flash chromatography on a pre-packed C18 column (gradient: 0-100% CH3CN in water (0.05% NH4HCO3)) to afford a mixture of diastereomers (65.0 mg, 88% yield) as a white solid. The two diastereomers were separated by Chiral-Prep-HPLC with the following conditions (Column: CHIRALPAKIA; Mobile Phase A: MtBE(0.1%DEA): EtOH=80: 20; Flow rate: 1.0mL/min mL/min; Gradient: isocratic; Injection Volume: 3μL mL) to afford 37 (Isomer 1) (14.9 mg, 20% yield, the faster peak) and 37 (Isomer 2) (13.8 mg, 19% yield, the slower peak) as white solids. LC-MS: (ESI, m/z): [M+H]+ = 661. [1035] 37 (Isomer 1): 1H NMR (300 MHz, DMSO-d6, ppm) δ 6.63 – 6.57 (m, 1H), 6.40 (d, J = 5.9 Hz, 1H), 6.02 (s, 2H), 5.12 – 5.01 (m, 1H), 4.69 (d, J = 11.7 Hz, 1H), 4.61 – 4.45 (m, 1H), 4.03 – 3.88 (m, 3H), 3.59 – 3.53 (m, 1H), 3.44 (d, J = 5.5 Hz, 1H), 3.02 (d, J = 12.7 Hz, 1H), 2.32 (s, 3H), 1.84 – 1.75 (m, 1H), 1.67 – 1.49 (m, 3H), 1.44 (d, J = 6.3 Hz, 3H), 0.92 – 0.66 (m, 4H). [1036] 37 (Isomer 2): 1H NMR (300 MHz, DMSO-d6, ppm) δ 6.63 – 6.57 (m, 1H), 6.41 (d, J = 6.3 Hz, 1H), 6.02 (s, 2H), 5.14 – 5.03 (m, 1H), 4.70 (d, J = 11.7 Hz, 1H), 4.61 – 4.46 (m, 1H), 4.03 – 3.88 (m, 3H), 3.60 – 3.52 (m, 1H), 3.44 (d, J = 5.8 Hz, 1H), 3.02 (d, J = 12.7 Hz, 1H), 2.32 (s, 3H), 1.83 – 1.74 (m, 1H), 1.67 – 1.57 (m, 3H), 1.44 (d, J = 6.3 Hz, 3H), 0.91 – 0.64 (m, 4H). [1037] Example 15 – Compound 38: 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl)-2,2,2- trifluoroethane-1,1-diol
[1038] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-((1-(2,2,2-trifluoro-1-hydroxyethyl) cyclopropyl) methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate
Figure imgf000289_0001
[1039] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-((1-(2,2,2-trifluoro-1-((trimethylsilyl) oxy) ethyl) cyclopropyl) methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (128 mg, 0.120 mmol, Example 14, step 1) and TBAF (0.4 mL, 1 M in THF) in THF (1.5mL) was stirred at room temperature for 20 min. The resulting solution was partitioned between water and EtOAc. The separated organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-40% EtOAc / petroleum ether) to afford 87.6 mg (73% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 1001 [1040] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-((1-(2,2,2-trifluoroacetyl) cyclopropyl) methoxy)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate [1041] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-((1-(2,2,2-trifluoro-1-hydroxyethyl) cyclopropyl) methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate (87.6 mg, 0.0875 mmol) and NMO (20.8 mg, 0.180 mmol) in DCM (1.5 mL) was added TPAP (15.7 mg, 0.0400 mmol) at 0 °C, and the mixture was stirred at room temperature for 1 h. The resulting solution was partitioned between water and EtOAc. The organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-40% EtOAc / petroleum ether) to afford 85.1 mg (97% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 999 [1042] Step 3: 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab] heptalen-12-yl) oxy) methyl) cyclopropyl)-2,2,2-trifluoroethane-1,1-diol
Figure imgf000290_0001
[1043] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-((1-(2,2,2-trifluoroacetyl) cyclopropyl) methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (80.5 mg, 0.0800 mmol) in TFA (2.5mL) was stirred at room temperature for 1 h. The solvent was concentrated under vacuum. The crude product was purified by Prep-HPLC (conditions: Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 17% B to 42% B in 9 min, 42% B; Wavelength: 254/220 nm; RT1(min): 8.9) to afford 45.6 mg of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 677. 1H NMR (300 MHz, DMSO-d6+D2O, ppm): δ 6.54 (d, J = 39.2 Hz, 1H), 5.07 (d, J = 11.3 Hz, 1H), 4.57 – 4.50 (m, 1H), 4.48 (d, J = 9.4 Hz, 2H), 3.97 (d, J = 8.8 Hz, 1H), 3.58 (s, 1H), 3.44 (s, 1H),3.04 (d, J = 12.9 Hz, 1H), 2.31 (s, 3H), 1.82 (s, 1H), 1.63 (s, 3H), 1.43 (d, J = 6.3 Hz, 3H), 1.09 – 0.91 (m, 2H), 0.69 – 0.59 (m, 2H). [1044] Example 16 – Compound 39 (Isomer 1&2): (1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)-2,2- difluorocyclopropyl)methanol (two diastereomers)
Figure imgf000291_0001
[1045] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-12-((2,2-difluoro-1-(hydroxymethyl) cyclopropyl) methoxy)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab] heptalene-14-carboxylate (180 mg, 0.186 mmol, mixture of intermediates 28 and 29) in 2,2,2-trifluoroacetic acid (20 mL) was stirred for 30 minutes at room temperature. The solvent was concentrated under vacuum. The residue was purified by reverse phase flash chromatography on pre-packed C18 column (gradient: 0-100% CH3CN in water (0.05% NH4HCO3) to afford a mixture of diastereomers (90 mg, 77% yield) as a yellow solid. Two diastereomers were separated by Chiral-Prep-HPLC with the following conditions (Column: CHIRALPAK IE 2*25 cm, 5 μm; Mobile Phase A: MtBE (0.5% 2M NH3-MeOH)-HPLC, Mobile Phase B: EtOH--HPLC; Flow rate: 15 mL/min; Gradient: isocratic 10; Wavelength: 220/254 nm; RT1(min): 7.945; RT2(min): 9.834; Injection Volume: 0.4 mL; Number of Runs: 9) to afford 39 (Isomer 1) (30.0 mg, 26% yield, the faster peak) and 39 (Isomer 2) (21.6 mg, 19% yield, the slower peak) as white solids. LC-MS: (ESI, m/z): [M+H]+ = 629. [1046] 39 (Isomer 1): 1H NMR (400 MHz, DMSO-d6, ppm) δ 6.70 – 6.39 (m, 1H), 6.03 (s, 2H), 5.18 – 5.03 (m, 2H), 4.64 – 4.47 (m, 2H), 4.44 – 4.29 (m, 1H), 3.96 (d, J = 8.7 Hz, 1H), 3.65 – 3.52 (m, 3H), 3.45 (d, J = 6.0 Hz, 1H), 3.03 (d, J = 12.8 Hz, 1H), 2.32 (s, 3H), 1.87 – 1.76 (m, 1H), 1.75 – 1.60 (m, 3H), 1.59 – 1.50 (m, 2H), 1.44 (d, J = 6.3 Hz, 3H). [1047] 39 (Isomer 2): 1H NMR (400 MHz, DMSO-d6, ppm) δ 6.70 – 6.39 (m, 1H), 6.03 (s, 2H), 5.18 – 5.03 (m, 2H), 4.64 – 4.47 (m, 2H), 4.44 – 4.29 (m, 1H), 3.96 (d, J = 8.7 Hz, 1H), 3.65 – 3.52 (m, 3H), 3.45 (d, J = 6.0 Hz, 1H), 3.03 (d, J = 12.8 Hz, 1H), 2.32 (s, 3H), 1.87 – 1.76 (m, 1H), 1.75 – 1.50 (m, 5H), 1.44 (d, J = 6.3 Hz, 3H). [1048] Example 17 – Compound 40: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12- ((methylsulfonyl)methyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline
[1050] To a solution of 4-amino-2,6-dichloro-5-fluoronicotinic acid (1.00 g, 4.44 mmol, intermediate 1/step 4), NH4Cl (706 mg, 13.3 mmol) and DIPEA (3.44 g, 26.6 mmol) in N,N- dimethylacetamide (50 mL) was added HATU (3.38 g, 8.88 mmol) at room temperature. The resulting solution was stirred for 4 hours at room temperature. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (900 mg, 90.5% yield) as an off-white solid. LC-MS: (ESI, m/z): [M+H]+ = 224. [1051] Step 2: 2,6-Dichloro-4-(2-chloroacetamido)-5-fluoronicotinamide
Figure imgf000292_0001
[1052] Under nitrogen, a mixture of 4-amino-2,6-dichloro-5-fluoronicotinamide (500 mg, 2.23 mmol) and 2-chloroacetyl chloride (2 mL, 25.1 mmol, solvent) was irradiated in a microwave initiator at 50 °C for 30 minutes. The solution was diluted with water, neutralized to pH = 8 with saturated NaHCO3 aqueous solution and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (180 mg, 27.0% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 300. [1053] Step 3: 5,7-Dichloro-2-(chloromethyl)-8-fluoropyrido[4,3-d]pyrimidin-4(3H)-one
Figure imgf000293_0001
[1054] A mixture of 2,6-dichloro-4-(2-chloroacetamido)-5-fluoronicotinamide (180 mg, 0.602 mmol) and K2CO3 (41.5 mg, 0.301 mmol) in water (2 mL) was irradiated in a microwave initiator at 80 °C for 1 hour. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (90.0 mg, 53.0% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 282. [1055] Step 4: tert-Butyl (1R,2S,5S)-2-((S)-1-((7-chloro-2-(chloromethyl)-8-fluoro-4-oxo-3,4- dihydropyrido[4,3-d] pyrimidin-5-yl)oxy)ethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000293_0002
[1056] To a solution of tert-butyl (1S,2S,5R)-2-((S)-1-hydroxyethyl)-3,8-diazabicyclo [3.2.1] octane-8-carboxylate (98.3 mg, 0.384 mmol, intermediate 3) in tetrahydrofuran (2 mL) was added NaH (60% dispersion in mineral oil, 25.6 mg, 0.640 mmol) at 0°C and stirred for 30 minutes at room temperature. Then 5,7-dichloro-2-(chloromethyl)-8-fluoropyrido[4,3-d] pyrimidin-4(3H)-one (90.0 mg, 0.320 mmol) was added at room temperature and stirred for 2 hours. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (90.0 mg, 56.2% yield) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 502. [1057] Step 5: tert-Butyl (5S,5aS,6S,9R)-2-chloro-12-(chloromethyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1058] To a mixture of tert-butyl (1R,2S,5S)-2-((S)-1-((7-chloro-2-(chloromethyl)-8-fluoro-4-oxo- 3,4-dihydropyrido[4,3-d] pyrimidin-5-yl)oxy)ethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (90.0 mg, 0.179 mmol) and DIPEA (347 mg, 2.69 mmol) in dichloromethane (5 mL) was added BOPCl (182 mg, 0.716 mmol) at room temperature and the solution was stirred overnight at room temperature. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-35% ethyl acetate in petroleum ether) to afford the title compound (80.0 mg, 92.5% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 484. [1059] Step 6: tert-Butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12-((methylthio)methyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate
Figure imgf000294_0001
[1060] A solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-12-(chloromethyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate (80.0 mg, 0.166 mmol) and sodium methanethiolate (17.4 mg, 0.249 mmol) in ethanol (2 mL) was stirred at room temperature for 1 hour. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-35% ethyl acetate in petroleum ether) to afford the title compound (60.0 mg, 73.0% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 496. [1061] Step 7: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((methylthio)methyl)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1062] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- ((methylthio)methyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (60.0 mg, 0.121 mmol), (5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)boronic acid (86.7 mg, 0.182 mmol, intermediate 4), K3PO4 (1.5M aqueous solution, 0.4 mL, 0.600 mmol) and cataCXium A Pd G3 (17.6 mg, 0.0242 mmol) in tetrahydrofuran (2 mL) was stirred at 60 °C for 2 hours. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-50% EtOAc in petroleum ether) to afford the title compound (70 mg, 64.8% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 893. [1063] Step 8: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((methylsulfonyl)methyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000295_0001
[1064] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((methylthio)methyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (70.0 mg, 0.0784 mmol) in ethyl acetate (2 mL) was added m-CPBA (40.6 mg, 0.235 mmol) at 0 °C and stirred at room temperature for 2 hours. The reaction was quenched with saturated Na2S2O3 aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-50% ethyl acetate in petroleum ether) to afford the title compound (70.0 mg, 96.5% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 925. [1065] Step 9: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-((methylsulfonyl)methyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen- 2-yl)-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000296_0001
[1066] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((methylsulfonyl)methyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (70.0 mg, 0.0757 mmol) in 2,2,2-trifluoroacetic acid (10 mL) was stirred at room temperature for 1 hour. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 63% B to 84% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 9.8) to afford the title compound (16.6 mg, 37.5% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 585.1H NMR (300 MHz, DMSO-d6, ppm) δ 6.73 – 6.40 (m, 1H), 6.05 (s, 2H), 5.33 – 5.18 (m, 1H), 4.76 – 4.51 (m, 3H), 4.01 (d, J = 8.8 Hz, 1H), 3.62 – 3.52 (m, 1H), 3.46 (d, J = 5.4 Hz, 1H), 3.23 (s, 3H), 3.05 (d, J = 12.7 Hz, 1H), 2.75 (s, 1H), 2.33 (s, 3H), 1.94 – 1.77 (m, 1H), 1.76 – 1.50 (m, 3H), 1.46 (d, J = 6.3 Hz, 3H). [1067] Example 18 – Compound 41: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12- (methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho- [1,8-ab] heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000296_0002
[1068] Step 1: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-3- methyl-4-(trifluoromethyl)aniline
Figure imgf000297_0001
[1069] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (730 mg, 0.831 mmol) in 2,2,2-trifluoroacetic acid (20 mL) was stirred at room temperature for 30 minutes. The solvent was concentrated under vacuum to afford the title compound (447 mg, crude) as a light yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 539. The crude was used for next step without further purification. [1070] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate
Figure imgf000297_0002
[1071] To a solution of 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-(methylthio)-5a, 6, 7, 8, 9, 10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-3- methyl-4-(trifluoromethyl) aniline (447 mg, crude) and DIPEA (1.07 g, 8.26 mmol) in dichloromethane (20 mL) was added Boc2O (272 mg, 1.25 mmol) at 0°C and the solution was stirred at room temperature for 3 hours. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford 650 mg (contains (Boc)2O) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 639. [1072] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1073] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (650 mg, crude from last step) in ethyl acetate (10 mL) was added m-CPBA (528 mg, 3.06 mmol) in portions at 0 °C and stirred at room temperature for 1 hour. The reaction was quenched with saturated Na2S2O3 aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-60% ethyl acetate in petroleum ether) to afford the title compound (430 mg, 77% yield over three steps) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 671. [1074] Step 4: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl- 4-(trifluoromethyl)aniline
Figure imgf000298_0001
[1075] To a solution of tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (50.0 mg, 0.0745 mmol) in HFIP (10 mL) was added 2,2,2-trifluoroacetic acid (0.5 mL, 6.73 mmol) at room temperature and the solution was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 28% B to 47% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 9.23) to afford the title compound (11.7 mg, 27.5% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 571.1H NMR (300 MHz, DMSO-d6, ppm) δ 6.78 – 6.41 (m, 1H), 6.09 (s, 2H), 5.24 – 5.08 (m, 1H), 4.80 – 4.57 (m, 1H), 4.10 (d, J = 8.8 Hz, 1H), 3.61 (d, J = 5.1 Hz, 1H), 3.56 – 3.46 (m, 1H), 3.39 (s, 3H), 3.15 (d, J = 12.8 Hz, 1H), 2.95 (s, 1H), 2.34 (s, 3H), 1.88 – 1.54 (m, 4H), 1.48 (d, J = 6.3 Hz, 3H). [1076] Example 19 – Compound 42: 2-Fluoro-5-((5aS,6S,9R)-1-fluoro-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-3-methyl-4- (trifluoromethyl)aniline
Figure imgf000299_0001
[1077] Step 1: tert-Butyl (5aS,6S,9R)-2-chloro-1-fluoro-12-(methylsulfonyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000299_0002
[1078] To a solution of tert-butyl (4R,7S,8S)-13-chloro-14-fluoro-17-methylsulfanyl-10-oxa- 2,12,16,18,20-pentazapentacyclo[9.7.1.14,7.02,8.015,19]icosa-1(18),11(19),12,14,16-pentaene-20- carboxylate (600 mg, 1.28 mmol, intermediate 2) in ethyl acetate (8.00 mL) was added m-CPBA (662 mg, 3.85 mmol) at 0 °C. The resulting solution was stirred for 1 h at room temperature. The reaction was quenched with saturated Na2S2O3 aqueous, extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-55% EtOAc / petroleum ether) to afford 578 mg (90.1% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 500. [1079] Step 2: tert-Butyl (5aS,6S,9R)-2-chloro-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate [1080] To a solution of tert-butyl (5aS,6S,9R)-2-chloro-1-fluoro-12-(methylsulfonyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (578 mg, 1.16 mmol) in methyl alcohol (5.00 mL) was added NaBH4 (87.6 mg, 2.31 mmol) at 0 ℃. The resulting solution was stirred for 1 h at room temperature. The reaction was quenched by water, extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-55% EtOAc / petroleum ether) to afford 224 mg (45.8% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 422. [1081] Step 3: tert-Butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000300_0001
[1082] Under nitrogen, a solution of tert-butyl (5aS,6S,9R)-2-chloro-1-fluoro-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (203 mg, 0.480 mmol), (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)boronic acid (459 mg, 0.960 mmol, intermediate 4), cataCXium A Pd G3 (105 mg, 0.140 mmol) and K3PO4 (1.5 M in water, 0.960 mL, 1.44 mmol) in tetrahydrofuran (2.00 mL) was stirred for 1 h at 60 ℃. The resulting solution was partitioned between water and EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-50% EtOAc / petroleum ether) to afford 200 mg (50.8% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 819. [1083] Step 4: 2-Fluoro-5-((5aS,6S,9R)-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4- (trifluoromethyl)aniline [1084] A solution of tert-butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (200 mg, 0.240 mmol) in 2,2,2-trifluoroacetic acid (1.00 mL) was stirred for 30 min at room temperature. The solvent was evaporated under vacuum. The residue was purified by PREP_HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 17% B to 42% B in 9 min; Wavelength: 254nm/220nm; RT1(min): 7.9) to afford 85.3 mg (73% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 479.1H NMR (300 MHz, DMSO-d6, ppm): δ 8.65 (s, 1H), 6.61 (s, 1H), 6.03 (s, 2H), 4.99 – 4.89 (m, 1H), 4.54 (dd, J = 13.3, 2.2 Hz, 1H), 4.43 (dd, J = 13.3, 7.7 Hz, 1H), 4.03 (d, J = 7.4 Hz, 1H), 3.62 – 3.48 (m, 2H), 3.04 (d, J = 12.7 Hz, 1H), 2.83 (s, 1H), 2.32 (s, 3H), 1.66 – 1.58 (m, 4H). [1085] Example 20 – Compound 43: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen- 2-yl)-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000301_0001
[1086] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1087] Under nitrogen, a solution of [5-[bis[(4-methoxyphenyl)methyl]amino]-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl]boronic acid (1.58g, 3.32mmol, intermediate 4), tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (400mg, 0.83mmol, intermediate 5/step 2), K3PO4 (0.5 mL, 1.5 M in H2O) and cataCXium A Pd G3 (121 mg, 0.170 mmol) in THF (2.5 mL) was stirred for 3 h at 60oC. The resulting solution was partitioned between water and EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-40% EtOAc / petroleum ether) to afford 670 mg (91.8% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 879. [1088] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000302_0001
[1089] Under nitrogen, a solution of tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)- 4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (420mg, 0.48mmol) and m-CPBA (329mg, 1.91mmol) in EtOAc (5 mL) was stirred for 3 h at room temperature. The reaction was quenched by saturated NaHCO3 aqueous and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-50% EtOAc/petroleum ether) to afford 248 mg (57% yield) of the title compound as a yellow solid. LC- MS: (ESI, m/z): [M+H]+ = 911. [1090] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000303_0001
[1091] Under nitrogen, to a solution of tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (248mg, 0.270mmol) in MeOH (5mL) was added NaBH4 (25.8mg, 0.680mmol) at 0 °C. The resulting solution was stirred at room temperature for 2h. The reaction was quenched with saturated NH4Cl aqueous, extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-50% EtOAc/petroleum ether) to afford 143mg (63.1% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 833. [1092] Step 4: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-3-methyl-4- (trifluoromethyl)aniline
Figure imgf000303_0002
[1093] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (143 mg, 0.172mmol) in TFA (2 mL) was stirred at 25 oC for 1 hour. The solvent was concentrated under vacuum. The residue was purified by Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 17% B to 42% B in 9 min; Wavelength: 254nm/220nm; RT1(min): 9.5 to yield 31.8mg (37.6% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 493. 1H NMR (300 MHz, DMSO-d6, ppm): δ 8.65 (s, 1H), 6.54 (d, J = 41.5 Hz, 1H), 6.03 (s, 2H), 5.21 (m, 1H), 4.58 (m, 1H), 3.97 (d, J = 8.9 Hz, 1H), 3.48 (m, 2H), 3.00 (d, J = 12.7 Hz, 1H), 2.30 (m, 3H), 1.78 (d, J = 10.8 Hz, 1H), 1.68 – 1.51 (m, 4H), 1.43 (d, J = 6.3 Hz, 3H). [1094] Example 21 – Compound 44: 2-Fluoro-5-(1-fluoro-5,5-dimethyl-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4- (trifluoromethyl)aniline
Figure imgf000304_0001
[1095] Step 1: tert-Butyl 2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5,5-dimethyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000304_0002
[1096] Under nitrogen, a solution of tert-butyl 2-chloro-1-fluoro-5,5-dimethyl-12-(methylthio)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (200 mg, 0.403 mmol, intermediate 7), (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)boronic acid (357 mg, 0.748 mmol, intermediate 4), cataCxium A Pd G3 (77.4 mg, 0.106 mmol) and K3PO4 (286 mg, 1.35 mmol) in tetrahydrofuran (8 mL) and water (1.2mL) was stirred at 60oC for 3 hours. The reaction was cooled to room temperature, diluted with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-21% EtOAc / petroleum ether) to afford 221 mg (61.4% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 893. [1097] Step 2: tert-Butyl 2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5,5-dimethyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000305_0001
[1098] Under nitrogen, to a solution of tert-butyl 2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5,5-dimethyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (220 mg, 0.246 mmol) in dichloromethane (6 mL) was added m-CPBA (146.2 mg, 0.850 mmol) at 0oC. The solution was stirred at room temperature for 1 hour. Then the reaction was quenched with aqueous Na2S2O3 solution, extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-45% EtOAc / petroleum ether) to afford 144 mg (63.3% yield) of the title compound as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 925. [1099] Step 3: tert-Butyl 2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5,5-dimethyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000305_0002
[1100] Under nitrogen, to a solution of tert-butyl 2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5,5-dimethyl-12-(methylsulfonyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (142 mg, 0.154 mmol) in methyl alcohol (4 mL) was added NaBH4 (21.4 mg, 0.563 mmol) at 0oC. The solution was stirred at room temperature for 30 min. Then the reaction was quenched with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-35% EtOAc / petroleum ether) to afford 99 mg (75.9% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 847. [1101] Step 4: 2-Fluoro-5-(1-fluoro-5,5-dimethyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-3-methyl-4- (trifluoromethyl)aniline
Figure imgf000306_0001
[1102] A solution of tert-butyl 2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5,5-dimethyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (98.1 mg, 0.116 mmol) in 2,2,2- trifluoroacetic acid (4 mL) was stirred at room temperature for 1 hour. The solution was concentrated under vacuum. The residue was purified by prep-HPLC with the following conditions: (Column: XBridge Prep Shield RP OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 27% B to 45% B in 10 min; Wavelength: 254 / 220 nm; RT1(min): 8.3) to afford 25.1 mg (42.7% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 507.1H NMR (500 MHz, DMSO-d6, ppm) δ 8.64 (s, 1H), 6.61 (br, 1H), 6.02 (br, 2H), 5.27 (br, 1H), 3.97 – 3.96 (m, 1H), 3.84 – 3.83 (m, 1H), 3.53 – 3.52 (m, 1H), 3.21 – 3.19 (m, 1H), 2.86 – 2.83 (m, 1H), 2.33 (s, 3H), 1.61 – 1.53 (m, 3H), 1.53 (s, 3H), 1.37 – 1.31 (m, 1H), 1.30 (s, 3H). [1103] Example 22 – Compound 45: ((5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-5-yl)methanol
[1104] Step 1: tert-Butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-1-fluoro-12-(methylthio)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000307_0001
[1105] Under nitrogen, a solution of tert-butyl (5aS,6S,9R)-5-(((tert-butyldiphenylsilyl) oxy) methyl) -2-chloro-1-fluoro-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (400 mg, 0.540 mmol, intermediate 8), (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)boronic acid (674 mg, 1.41 mmol, intermediate 4), cataCxium A Pd G3 (115 mg, 0.160 mmol) and K3PO4 (2 mL, 1.5 M in H2O) in tetrahydrofuran (10 mL) was stirred at 60oC for 3 hours. The solution was diluted with water, extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-20% EtOAc / petroleum ether) to afford 497 mg (80.7 % yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 1133. [1106] Step 2: tert-Butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-1-fluoro-12-(methylsulfonyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000308_0001
[1107] Under nitrogen, to a solution of tert-butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)- 4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-1-fluoro-12- (methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (497 mg, 0.440 mmol) in dichloromethane (8 mL) was added m-CPBA (232 mg, 1.34 mmol) at 0oC. The solution was stirred at room temperature for 1 hour. Then the reaction was quenched with aqueous Na2S2O3 and extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-40% EtOAc / petroleum ether) to afford 383 mg (74.9% yield) of the title compound as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 1165. [1108] Step 3: tert-Butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-1-fluoro-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000308_0002
[1109] Under nitrogen, to a solution of tert-butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)- 4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-1-fluoro-12- (methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (102 mg, 0.090 mmol) in methyl alcohol (4 mL) was added NaBH4 (13.5 mg, 0.360 mmol) at 0oC. The solution was stirred at room temperature for 30 min. Then the reaction was quenched with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-55% EtOAc / petroleum ether) to afford 65 mg (68.1% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 1087. [1110] Step 4: ((5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-5- yl)methanol
Figure imgf000309_0001
[1111] A solution of tert-butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-1-fluoro-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14- carboxylate (61.1 mg, 0.060 mmol) in 2,2,2-trifluoroacetic acid (4 mL) was stirred at 50oC for 3 hours. The solution was concentrated under vacuum. The residue was purified by prep-HPLC with the following conditions: (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 23% B to 45% B in 10 min; Wavelength: 254 / 220 nm; RT1(min): 8.3) to afford 3.3 mg (11.5% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 509. 1H NMR (400 MHz, DMSO-d6, ppm) δ 8.58 (s, 1H), 6.65 – 6.51 (m, 1H), 6.02 (s, 2H), 5.30 – 5.15 (m, 1H), 4.68 – 4.55 (m, 2H), 4.01 – 3.92 (m, 3H), 3.67 – 3.66 (m, 1H), 3.55 – 3.53 (m, 1H), 3.35 – 3.34 (m, 1H), 2.33 (s, 3H), 1.72 – 1.64 (m, 4H). [1112] Example 23 – Compound 46: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-(1- methyl-1,6-diazaspiro [3.3] heptan-6-yl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza [6,9] methanonaphtho[1,8-ab] heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000309_0002
[1113] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(1-methyl-1,6-diazaspiro [3.3] heptan-6-yl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1114] A solution of 1-methyl-1,6-diazaspiro [3.3]heptane dihydrochloride (21.4 mg, 0.084 mmol) and DIPEA (58.3 mg, 0.452 mmol) in tetrahydrofuran (4 mL) was stirred at room temperature for 5 minutes before the addition of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4- fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (100.1 mg, 0.110 mmol, intermediate 5). After 1 h, the reaction was diluted with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-45% EtOAc / petroleum ether) to afford 89.8 mg (86.6% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 943. [1115] Step 2: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-(1-methyl-1,6- diazaspiro[3.3]heptan-6-yl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza[6,9]methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000310_0001
[1116] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(1-methyl-1,6-diazaspiro[3.3]heptan-6-yl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate (80.1 mg, 0.0849 mmol) in 2,2,2-trifluoroacetic acid (3 mL) was stirred at room temperature for 1 h. The solution was concentrated under vacuum. The residue was purified by prep-HPLC with the following conditions: (Column: YMC Triart C18 ExRs, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 25% B to 44% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 9.83) to afford 23.7 mg (46.3% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 603.1H NMR (500 MHz, DMSO-d6, ppm) δ 6.60 – 6.44 (m, 1H), 5.99 (br, 2H), 5.12 – 5.09 (m, 1H), 4.41 – 4.38 (m, 1H), 4.31 – 4.23 (m, 2H), 4.07 – 4.02 (m, 2H), 3.91 – 3.89 (m, 1H), 3.53 – 3.52 (m, 1H), 3.42 – 3.41 (m, 1H), 3.07 – 3.03 (m, 2H), 2.96 – 2.94 (m, 1H), 2.32 – 2.27 (m, 8H), 1.94 – 1.92 (m, 1H), 1.66 – 1.51 (m, 3H), 1.41 (d, J = 6.0 Hz, 3H). [1117] Each compound in Table 6 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Example 23. Table 6:
Figure imgf000311_0001
[1118] Example 24 – Compound 49: 1-((5R,5aS,6S,9R)-2-(5-amino-3-fluoro-2- (trifluoromethyl)phenyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-N,N,3-trimethylazetidin-3- amine
[1119] Step 1: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-3-fluoro-2- (trifluoromethyl)phenyl)-1-fluoro-12-(methylthio)-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000312_0001
[1120] Under nitrogen, a solution of tert-butyl (5R,5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)- 5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (150.1 mg, 0.280 mmol, intermediate 13), 3- fluoro-N,N-bis(4-methoxybenzyl)-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-4- (trifluoromethyl)aniline (259 mg, 0.475 mmol, intermediate 33), cataCxium A Pd G3 (41.7 mg, 0.0573 mmol) and K3PO4 (178 mg, 0.840 mmol) in tetrahydrofuran (7 mL) and water (1.5 mL) was heated at 60 °C for 3 h. The solution was cooled to room temperature, diluted with water, and extracted with EtOAc. The combined organic extracts were dried over anhydrous sodium sulfate, and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-20% EtOAc / petroleum ether) to afford 225 mg (87.4 % yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 919. [1121] Step 2: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-3-fluoro-2- (trifluoromethyl) phenyl)-1-fluoro-12-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate
Figure imgf000313_0001
[1122] Under nitrogen, to a solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-3-fluoro-2-(trifluoromethyl)phenyl)-1-fluoro-12-(methylthio)-5-(trifluoromethyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene - 14-carboxylate (200.1 mg, 0.218 mmol) in dichloromethane (6 mL) was added m-CPBA (113 mg, 0.653 mmol) at 0 °C, and the solution was warmed to room temperature for 1 h. The reaction was quenched with aqueous Na2S2O3, diluted with water, and extracted with dichloromethane. The combined organic extracts were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-33% EtOAc / petroleum ether) to afford 183 mg (88.3% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 951. [1123] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-3-fluoro-2- (trifluoromethyl) phenyl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab]heptalene-14-carboxylate
Figure imgf000313_0002
[1124] To a solution of N,N,3-trimethylazetidin-3-amine hydrochloride (75.2 mg, 0.499 mmol) and DIPEA (81.4 mg, 0.631 mmol) in tetrahydrofuran (5 mL) was added tert-butyl (5R,5aS,6S,9R)-2-(5- (bis(4-methoxybenzyl) amino)-3-fluoro-2-(trifluoromethyl) phenyl)-1-fluoro-12-(methylsulfonyl)-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate (150.1 mg, 0.158 mmol) at room temperature. After 1 h, the reaction was diluted with water and extracted with EtOAc. The combined organic extracts were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-6% MeOH / DCM) to afford 145 mg (93.2% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 985. [1125] Step 4: 1-((5R,5aS,6S,9R)-2-(5-amino-3-fluoro-2-(trifluoromethyl) phenyl)-1-fluoro-5- (trifluoromethyl) -5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8-ab] heptalen-12-yl)-N, N,3-trimethylazetidin-3-amine
Figure imgf000314_0001
[1126] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-3-fluoro-2- (trifluoromethyl) phenyl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (126.1 mg, 0.128 mmol) in 2,2,2-trifluoroacetic acid (5 mL) was stirred at room temperature for 1 h. The solution was concentrated under vacuum. The residue was purified by prep-HPLC (Column: XBridge Shield RP18 OBD Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 33% B to 53% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 8.5) to afford 0.50 g (61% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 645. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.56 – 6.53 (m, 1H), 6.36 – 6.33 (m, 3H), 5.53 – 5.50 (m, 1H), 5.16 – 5.14 (m, 1H), 4.32 – 4.30 (m, 1H), 3.94 – 3.74 (m, 4H), 3.53 – 3.51 (m, 2H), 3.04 – 3.02 (m, 1H), 2.13 (s, 6H), 1.99 – 1.96 (m, 1H), 1.84 – 1.81 (m, 1H), 1.66 – 1.57 (m, 2H), 1.24 (s, 3H). [1127] Example 25 – Compound 50: 6-((5S,5aS,6S,9R)-12-(3-(Dimethylamino)-3- methylazetidin-1-yl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-4-methyl-5-(trifluoromethyl) pyridin-2-amine
[1128] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-4-methyl-3- (trifluoromethyl) pyridin-2-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate
Figure imgf000315_0001
[1129] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- (methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (0.100 g, 0.210 mmol, intermediate 5/step 2), 6-(allylsulfonyl)-N,N- bis(4-methoxybenzyl)-4-methyl-5-(trifluoromethyl)pyridin-2-amine (216 mg, 0.410 mmol, intermediate 41), Pd(OAc) 2 (4.69 mg, 0.0200 mmol), P(t-Bu) 2 MeHBF 4 (10.3 mg, 0.0400 mmol) and Cs2CO3 (135 mg, 0.410 mmol) in 1,4-dioxane (4.0 mL) was stirred overnight at 120 °C. The reaction was cooled to room temperature and partitioned between water and EtOAc. The collected organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-40% EtOAc / petroleum ether) to afford 132 mg (71.6% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 862. [1130] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-4-methyl-3- (trifluoromethyl) pyridin-2-yl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1131] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (122 mg, 0.140 mmol) in EtOAc (4.0 mL) was added m-CPBA (73.5 mg, 0.420 mmol) at 0 °C. The reaction was then warmed to room temperature for 1 h. The reaction was quenched with aqueous Na2S2O3 and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-55% EtOAc / petroleum ether) to afford 117 mg (92.4% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 894. [1132] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-4-methyl-3- (trifluoromethyl) pyridin-2-yl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000316_0001
[1133] A solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-4-methyl-3- (trifluoromethyl) pyridin-2-yl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (107 mg, 0.120 mmol), N,N,3-trimethylazetidin-3-amine (35.9 mg, 0.240 mmol) and DIPEA (61.8 mg, 0.480 mmol) in THF (2.5 mL) was stirred at room temperature for 1 h. The resulting solution was partitioned between water and EtOAc. The organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. Purification by flash chromatography on silica gel eluting (gradient: 0%-10% MeOH / DCM) afforded 105 mg (94.5% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 928. [1134] Step 4: 6-((5S,5aS,6S,9R)-12-(3-(Dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-4-methyl-5-(trifluoromethyl)pyridin-2-amine [1135] A solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (0.100 g, 0.110 mmol) in TFA (3 mL) was stirred at 50 °C for 4 h. The resulting mixture was concentrated under vacuum, and the crude product was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 3% B to 20% B in 9 min; Wavelength: 254nm/220nm; RT1(min): 7.3) to afford 27.9 mg (44.0% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 588.1H NMR (300 MHz, DMSO-d6) δ 6.77 (s, 2H), 6.45 (s, 1H), 5.11 (m, 1H), 4.35 (m, 1H), 3.89 (d, J = 9.2 Hz, 3H), 3.73 (s, 2H), 3.51 (d, J = 5.1 Hz, 1H), 3.45 – 3.38 (m, 1H), 2.94 (d, J = 12.6 Hz, 1H), 2.34 (d, J = 2.3 Hz, 3H), 2.12 (s, 6H), 1.91 (s, 1H), 1.60 (m, 3H), 1.41 (d, J = 6.3 Hz, 3H), 1.25 (s, 3H). [1136] Each compound in Table 7 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Examples 24 & 25. Table 7:
Figure imgf000317_0001
[1137] Example 26 – Compound 55: 4-((5S,5aS,6S,9R)-12-(3-(Dimethylamino)-3- methylazetidin-1-yl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-6-methyl-5-(trifluoromethyl)pyrimidin-2-amine
Figure imgf000318_0001
[1138] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl) amino)-6-methylpyrimidin- 4-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000318_0002
[1139] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- (methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho [1,8- ab]heptalene-14-carboxylate (175 mg, 0.360 mmol, intermediate 5/step 2), N,N-bis(4- methoxybenzyl)-4-methyl-6-(tributylstannyl)pyrimidin-2-amine (349 mg, 0.550 mmol, intermediate 35), LiCl (38.2 mg, 0.910 mmol), CuI (13.8 mg, 0.0730 mmol) and Pd(PPh3)4 (84.3 mg, 0.0730 mmol) in 1,4-dioxane (2.5 mL) was stirred at 100 °C overnight. The solution was cooled to room temperature, diluted with water, and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate, and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-40% EtOAc / petroleum ether) to afford 177 mg (47.8% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 795. [1140] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-5-iodo-6- methylpyrimidin-4-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1141] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl) amino)-6- methylpyrimidin-4-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (166 mg, 0.210 mmol) in AcOH (2 mL) was added NIS (42.3 mg, 0.190 mmol) at room temperature. The solution was stirred at room temperature overnight. The reaction was quenched with saturated aqueous Na2S2O3 solution and extracted with EtOAc. The combined organic extracts were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-40% EtOAc/petroleum ether) to afford 154 mg (74.4% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 921. [1142] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl) amino)-6-methyl-5- (trifluoromethyl) pyrimidin-4-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000319_0001
[1143] Under nitrogen, to a mixture of Cu(O2CCF2SO2F)2 (653 mg, 1.57 mmol) and Cu (100 mg, 1.57 mmol) was added a solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-5- iodo-6-methylpyrimidin-4-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (144 mg, 0.157 mmol) in DMF (3 mL) at 0 °C. The solution was warmed to 90 °C for 1 h. The solution was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-40% EtOAc/petroleum ether) to afford 101 mg (74.9% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 863. [1144] Step 4: tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-6-methyl-5- (trifluoromethyl) pyrimidin-4-yl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1145] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-6-methyl-5- (trifluoromethyl)pyrimidin-4-yl)-1-fluoro-5-methyl-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (90.1 mg, 0.100 mmol) in EtOAc (2 mL) was added m-CPBA (54.2 mg, 0.310 mmol) at 0 °C. The solution was stirred at room temperature for 1 h. The reaction was quenched with saturated aqueous Na2S2O3 solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-40% EtOAc/petroleum ether) to afford 89.3 mg (95.2% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 895. [1146] Step 5: tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl) amino)-6-methyl-5- (trifluoromethyl)pyrimidin-4-yl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000320_0001
[1147] A solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-6-methyl-5- (trifluoromethyl)pyrimidin-4-yl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (85.1 mg, 0.0950 mmol), N,N,3-trimethylazetidin-3-amine hydrochloride (28.5 mg, 0.190 mmol) and DIPEA (49.2 mg, 0.380 mmol) in THF (2 mL) was stirred at room temperature for 1 h. The resulting reaction diluted with EtOAc, washed with water. The organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by C18 column (solvent gradient: 0-100% ACN in water (0.05% NH4HCO3)) to afford 82.2 mg (92.8% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 929. [1148] Step 6: 4-((5S,5aS,6S,9R)-12-(3-(Dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-6-methyl-5-(trifluoromethyl)pyrimidin-2-amine [1149] A solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-6-methyl-5- (trifluoromethyl)pyrimidin-4-yl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (79.1 mg, 0.0850 mmol) in TFA (2.5 mL) was stirred at 80 °C for 0.5 h. The solution was concentrated under vacuum. The crude product was purified by Prep-HPLC (Column: YMC Triart C18 ExRs, 30*150 mm, 5μm; Mobile Phase A: water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 23% B to 45% B in 7 min; Wavelength: 254 nm/220 nm) to afford 32.7 mg (64.8% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 589.1H NMR (400 MHz, DMSO-d6, ppm): δ 7.55 (s, 2H), 5.15 – 4.96 (m, 1H), 4.47 – 4.25 (m, 1H), 4.00 – 3.78 (m, 3H), 3.72 (s, 2H), 3.53 – 3.43 (m, 1H), 3.41 – 3.35 (m, 1H), 2.92 (d, J = 12.6 Hz, 1H), 2.47 – 2.43 (m, 3H), 2.10 (s, 6H), 1.88 (s, 1H), 1.74 – 1.46 (m, 3H), 1.39 (d, J = 6.2 Hz, 3H), 1.23 (s, 3H). [1150] Example 27 – Compound 56: 5-((5S,5aS,6S,9R)-12-((1-((Dimethylamino) methyl) cyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000321_0001
[1151] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((1-((dimethylamino)methyl)cyclopropyl)methoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000321_0002
[1152] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((1-(hydroxymethyl)cyclopropyl)methoxy)-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (100.0 mg, 0.107 mmol, intermediate 26) and NMO (25.1 mg, 0.214 mmol) in dichloromethane (2 mL) was added TPAP (18.8 mg, 0.0536 mmol) at 0 ℃ and stirred for 1 hour at room temperature. The resulting mixture was filtered and the filter cake was washed with dichloromethane. To the combined filtrate was added NaOAc (132 mg, 1.61 mmol) and dimethylamine (2M solution in THF, 0.8 mL, 1.60 mmol) at room temperature and stirred for 1 hour. Then NaBH3CN (101 mg, 1.61 mmol) was added at room temperature and stirred overnight. The reaction was quenched with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (50.0 mg, 48.7% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 960. [1153] Step 2: 5-((5S,5aS,6S,9R)-12-((1-((Dimethylamino)methyl)cyclopropyl)methoxy)-1-fluoro- 5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000322_0001
[1154] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((1-((dimethylamino)methyl)cyclopropyl)methoxy)-1-fluoro- 5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (50.0 mg, 0.0521 mmol) in 2,2,2-trifluoroacetic acid (10 mL) was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Shield RP18 OBD Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 29% B to 51% B in 10 min, 51% B; Wavelength: 220/254 nm; RT1(min): 7.75) to afford the title compound (8.7 mg, 26.9% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 620.1H NMR (300 MHz, DMSO-d6, ppm) δ 6.71 – 6.35 (m, 1H), 6.00 (s, 2H), 5.07 (d, J = 11.7 Hz, 1H), 4.59 – 4.40 (m, 1H), 4.20 (s, 2H), 3.93 (d, J = 8.7 Hz, 1H), 3.60 – 3.50 (m, 1H), 3.43 (d, J = 5.4 Hz, 1H), 3.00 (d, J = 12.6 Hz, 1H), 2.30 (s, 3H), 2.27 – 2.25 (m, 1H), 2.22 (s, 2H), 2.15 (s, 5H), 1.86 – 1.73 (m, 1H), 1.73 – 1.49 (m, 3H), 1.42 (d, J = 6.3 Hz, 3H), 0.68 – 0.58 (m, 2H), 0.45 – 0.32 (m, 2H). [1155] Example 28 – Compound 57: N-((1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)cyclopropyl)methyl)acetamide
Figure imgf000323_0001
[1156] Step 1: tert-Butyl (5S,5aS,6S,9R)-12-((1-(aminomethyl)cyclopropyl)methoxy)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000323_0002
[1157] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((1- (hydroxymethyl)cyclopropyl)methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (200 mg, 0.214 mmol, intermediate 26) and DIPEA (0.12 mL, 0.677 mmol) in dichloromethane (3 mL) was added Tf2O (0.07 mL, 0.416 mmol) dropwise at -10 °C and stirred for 5 minutes. Then the reaction mixture was bubbled with NH3 gas (generated in situ by dropping aqueous ammonia onto solid NaOH) for 1 minute at -10°C and stirred for 30 minutes at room temperature. The reaction mixture was diluted with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (180 mg, 90.2% yield) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 932. [1158] Step 2: tert-Butyl (5S,5aS,6S,9R)-12-((1-(acetamidomethyl)cyclopropyl)methoxy)-2-(5- (bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000324_0001
[1159] To a solution of tert-butyl (5S,5aS,6S,9R)-12-((1-(aminomethyl)cyclopropyl)methoxy)-2- (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (155 mg, 0.166 mmol), DMAP (2.00 mg, 0.0166 mmol) and DIPEA (21.4 mg, 0.166 mmol) in dichloromethane (2 mL) was added Ac2O (0.1M solution in dichloromethane, 0.8 mL) dropwise at 0 °C and stirred at room temperature for 1 hour. The reaction mixture was diluted with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-15% methanol in dichloromethane) to afford the title compound (50.0 mg, 30.9% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 974. [1160] Step 3: N-((1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)cyclopropyl)methyl)acetamide
Figure imgf000324_0002
[1161] A solution of tert-butyl (5S,5aS,6S,9R)-12-((1-(acetamidomethyl)cyclopropyl)methoxy)-2- (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (50.0 mg, 0.0513 mmol) in 2,2,2-trifluoroacetaldehyde (10 mL) was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 19% B to 50% B in 9 min; Wavelength: 254nm/220nm; RT1(min): 8.3) to afford the title compound (3.0 mg) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 634.1H NMR (300 MHz, DMSO-d6, ppm) δ 7.24 – 6.73 (m, 1H), 6.63 – 6.36 (m, 1H), 6.22 – 5.95 (m, 2H), 4.99 – 4.82 (m, 1H), 4.81 – 4.46 (m, 2H), 4.44 – 4.26 (m, 1H), 3.91 (d, J = 9.6 Hz, 1H), 3.89 – 3.76 (m, 2H), 3.50 – 3.42 (m, 2H), 2.94 (d, J = 12.7 Hz, 1H), 2.32 (s, 3H), 2.10 – 1.93 (m, 1H), 1.88 (s, 3H), 1.65 – 1.49 (m, 3H), 1.42 (d, J = 6.2 Hz, 3H), 0.91 – 0.38 (m, 4H). [1162] Example 29 – Compound 58: 5-((5S,5aS,6S,9R)-12-(3-(Dimethylamino)-2,2- difluoropropoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000325_0001
[1163] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-chloro-12-(3-(dimethylamino)-2,2-difluoropropoxy)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000325_0002
[1164] To a solution of 3-(dimethylamino)-2,2-difluoropropan-1-ol (130 mg, crude) in tetrahydrofuran (5 mL) was added NaH (60% dispersion in mineral oil, 95.0 mg, 2.38 mmol) in portions at 0 °C and stirred for 30 minutes at room temperature. Then tert-butyl (5S,5aS,6S,9R)-2- chloro-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (200 mg, 0.390 mmol, intermediate 6) was added and stirred for 1 hour at room temperature. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-40% ethyl acetate in petroleum ether) to afford the title compound (113 mg, 50.6% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 573. [1165] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-(3-(dimethylamino)-2,2-difluoropropoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000326_0001
[1166] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-12-(3-(dimethylamino)- 2,2-difluoropropoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (113 mg, 0.197 mmol), (5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)boronic acid (188 mg, 0.394 mmol, intermediate 4), K3PO4 (1.5M in H2O, 0.7 mL, 1.05 mmol) and cataCXium A Pd G3 (28.7 mg, 0.0394 mmol) in tetrahydrofuran (3.5 mL) was stirred for 1 hour at 60 °C. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-50% ethyl acetate in petroleum ether) to afford the title compound (126 mg, 65.9% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 970. [1167] Step 4: 5-((5S,5aS,6S,9R)-12-(3-(Dimethylamino)-2,2-difluoropropoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10- hexahydro -5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen- 2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000326_0002
[1168] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-(3-(dimethylamino)-2,2-difluoropropoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (126 mg, 0.130 mmol) in 2,2,2-trifluoroacetic acid (10 mL) was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by Prep- HPLC (Column: Xselect CSH C18 OBD Column 30*150mm 5μm, n; Mobile Phase A: Water (0.1%FA), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 28% B to 48% B in 8 min, 48% B; Wavelength: 254/220 nm; RT1(min): 8) to afford the title compound (20.0 mg, 24.4% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 630.1H NMR (300 MHz, DMSO-d6, ppm) δ 7.76 – 7.32 (m, 1H), 6.02 (s, 2H), 5.16 – 5.06 (m, 1H), 4.79 – 4.63 (m, 2H), 4.63 – 4.50 (m, 1H), 4.00 (d, J = 8.9 Hz, 1H), 3.67 – 3.60 (m, 1H), 3.53 – 3.50 (m, 1H), 3.07 (d, J = 12.8 Hz, 1H), 2.91 – 2.79 (m, 2H), 2.21 – 2.20 (m, 9H), 1.86 – 1.56 (m, 4H), 1.43 (d, J = 6.3 Hz, 3H). [1169] Each compound in Table 8 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Example 29. Table 8:
Figure imgf000327_0001
[1170] Example 30 – Compound 61: 4-((5S,5aS,6S,9R)-12-((1-(((2,2-Difluoroethyl) (methyl)amino) methyl) cyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-6-methyl-5- (trifluoromethyl)pyridin-2-amine
[1171] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl) pyridin-4-yl)-12-((1-(((tert-butyldimethylsilyl)oxy) methyl) cyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000328_0001
[1172] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-12-((1-(((tert- butyldimethylsilyl)oxy)methyl)cyclopropyl)methoxy)-2-chloro-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (826 mg, 1.27 mmol, intermediate 26, step 1), (6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)boronic acid (1.56 g, 3.39 mmol, intermediate 16), cataCXium A Pd G3 (185 mg, 0.254 mmol) and K3PO4 (2.54 mL, 1.5 M in water) in tetrahydrofuran (12.7 mL) was stirred for 1 h at 60 °C. The resulting solution was partitioned between water and EtOAc. The organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-20% DCM / MeOH) to afford 1.30 g (99.2% yield) of the title compound as a brown solid. LCMS: (ESI, m/z): [M+H]+ = 1030. [1173] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-1-fluoro-12-((1-(hydroxymethyl)cyclopropyl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1174] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-12-((1-(((tert-butyldimethylsilyl) oxy)methyl)cyclopropyl) methoxy) - 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (1.30 g, 1.27 mmol) in tetrahydrofuran (12.0 mL) was added TBAF (2.60 mL, 1 M in THF). The resulting solution was stirred for 5 h at room temperature. Solvent was evaporated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-55% EtOAc / petroleum ether) to afford 926 mg (80.1% yield) of the title compound as a tawny solid. LC-MS: (ESI, m/z): [M+H]+ = 916. [1175] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-12-((1-(((2,2- difluoroethyl)(methyl)amino)methyl)cyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000329_0001
[1176] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3-(trifluoromethyl)pyridin-4-yl)-1-fluoro-12-((1-(hydroxymethyl)cyclopropyl) methoxy) -5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (200 mg, 0.218 mmol) and DIPEA (84.7 mg, 0.654 mmol) in dichloromethane (5 mL) was added Tf2O (123 mg, 0.436 mmol) dropwise at -10 °C and stirred for 5 minutes. Then a solution of 2,2-difluoro-N-methylethan-1-amine in dichloromethane (3 mL) was added at -10 °C dropwise and stirred for 1 hour at room temperature. The reaction mixture was diluted with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (140 mg, 64.6% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 994. [1177] Step 4: 4-((5S,5aS,6S,9R)-12-((1-(((2,2-difluoroethyl) (methyl)amino)methyl) cyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-2-yl)-6-methyl-5-(trifluoromethyl)pyridin-2-amine
Figure imgf000330_0001
[1178] A solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-12-((1-(((2,2-difluoroethyl)(methyl)amino)methyl) cyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (140 mg, 0.141 mmol) in 2,2,2-trifluoroacetic acid (10 mL) was stirred for 3 hours at 50 °C. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 17% B to 42% B in 9 min; Wavelength: 254nm/220nm; RT1(min): 8.9) to afford the title compound (18.1 mg, 19.7% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 653.1H NMR (300 MHz, DMSO-d6, ppm) δ 6.82 (s, 2H), 6.29 – 5.83 (m, 2H), 5.13 – 5.02 (m, 1H), 4.60 – 4.42 (m, 1H), 4.23 (s, 2H), 3.94 (d, J = 8.5 Hz, 1H), 3.61 – 3.50 (m, 1H), 3.43 (d, J = 5.7 Hz, 1H), 3.06 – 2.94 (m, 1H), 2.86 – 2.69 (m, 2H), 2.49 – 2.39 (m, 6H), 2.31 (s, 3H), 1.92 – 1.72 (m, 1H), 1.72 – 1.47 (m, 3H), 1.42 (d, J = 6.3 Hz, 3H), 0.69 – 0.58 (m, 2H), 0.49 – 0.38 (m, 2H). [1179] Example 31 – Compound 62: 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)cyclopropyl)-2- (methylamino)ethan-1-ol (mixture of diastereomers at C2 piece)
[1180] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((1-(hydroxymethyl)cyclopropyl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000331_0001
[1181] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((1-(hydroxymethyl)cyclopropyl)methoxy)-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (300 mg, 0.322 mmol, intermediate 26) and NMO (75.4 mg, 0.644 mmol) in dichloromethane (5 mL) was added TPAP (56.6 mg, 0.161 mmol) at 0 ℃ and stirred for 1 hour at room temperature. The reaction was quenched with saturated Na2S2O3 aqueous solution. The reaction mixture was diluted with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-35% ethyl acetate in petroleum ether) to afford the title compound (250 mg, 83.4% yield) as an off-white solid. LC-MS: (ESI, m/z): [M+H]+ = 931. [1182] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((1-(oxiran-2-yl)cyclopropyl)methoxy)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000332_0001
[1183] Under nitrogen, to a solution of trimethylsulfonium iodide (142 mg, 0.700 mmol) in dimethyl sulfoxide (6 mL) was added NaH (60% dispersion in mineral oil, 22.4 mg) at 0 °C and stirred for 1 hour. Then a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino) - 4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((1-formylcyclopropyl) methoxy)-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (130 mg, 0.140 mmol) in tetrahydrofuran (1.2 mL) was added at 0 °C and stirred for 1 hour at room temperature. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-30% ethyl acetate in petroleum ether) to afford the title compound (91.3 mg, 69.0% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 945. [1184] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((1-(1-hydroxy-2-(methylamino) ethyl) cyclopropyl) methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000332_0002
[1185] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((1-(oxiran-2-yl)cyclopropyl)methoxy)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (70.0 mg, 0.0740 mmol) in ethanol (1 mL) was added MeNH2 (30 wt% solution in ethanol, 0.12 mL, 0.769 mmol) at room temperature and stirred for 1 hour at 80 °C. The solvent was concentrated under vacuum to afford the title compound (70.0 mg, crude) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 976. [1186] Step 4: 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)cyclopropyl)-2-(methylamino)ethan-1-ol (mixture of diastereomers at C2 piece)
Figure imgf000333_0001
[1187] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((1-(1-hydroxy-2-(methylamino)ethyl) cyclopropyl) methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (70.0 mg, 0.0717 mmol) in 2,2,2-trifluoroacetic acid (10 mL) was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: YMC Triart C18 ExRs 5um, 30*150mm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 22% B to 42% B in 12 min; Wavelength: 254nm/220nm) to afford the title compound (7.0 mg, 15.4% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 636.1H NMR (300 MHz, CD3OD, ppm) δ 6.72 – 6.46 (m, 1H), 5.32 (d, J = 13.4 Hz, 1H), 4.54 – 4.48 (m, 1H), 4.10 – 4.01 (m, 2H), 3.71 – 3.63 (m, 1H), 3.63 – 3.56 (m, 1H), 3.43 – 3.37 (m, 2H), 3.15 (d, J = 13.4 Hz, 1H), 2.98 – 2.88 (m, 2H), 2.50 (s, 3H), 2.38 (s, 3H), 2.06 – 2.00 (m, 1H), 1.81 – 1.75 (m, 3H), 1.57 (d, J = 6.3 Hz, 3H), 0.82 – 0.67 (m, 4H). [1188] Example 32 – Compound 63: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-((1- (((2,2,2-trifluoroethyl)amino)methyl)cyclopropyl)methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4- (trifluoromethyl)aniline
[1189] Step 1: tert-Butyl (5S,5aS,6S,9R)-12-((1-(((tert-butyldimethylsilyl)oxy) methyl) cyclopropyl) methoxy) -2-chloro-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza -6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000334_0001
[1190] To an ice-cooled solution of (1-(((tert-butyldimethylsilyl) oxy) methyl)cyclopropyl) methanol (842 mg, 3.89 mmol) in tetrahydrofuran (10 mL) was added NaH (60% dispersion in mineral oil, 390 mg, 9.75 mmol) portionwise. The reaction was warmed to room temperature for 30 minutes before the addition of tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- (methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (1.00 g, 1.95 mmol, intermediate 6). After 2 h, the reaction was quenched with saturated aqueous NH4Cl solution. The resulting mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-20% ethyl acetate in petroleum ether) to afford the title compound (800 mg, 63.1% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 650. [1191] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((1-(((tert-butyldimethylsilyl)oxy)methyl)cyclopropyl)methoxy)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000335_0001
[1192] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-12-((1-(((tert-butyldimethylsilyl) oxy)methyl)cyclopropyl)methoxy)-2-chloro-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.800 g, 1.23 mmol), (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl) boronic acid (1.17 g, 2.45 mmol, intermediate 4), K3PO4 (1.5M aqueous solution, 4 mL, 6.00 mmol) and cataCXium A Pd G3 (179 mg, 0.246 mmol) in tetrahydrofuran (20 mL) was stirred at 60 °C for 3 h. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (1.20 g, 93.2% yield) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 1047. [1193] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((1-(hydroxymethyl)cyclopropyl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000335_0002
[1194] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((1-(((tert-butyldimethylsilyl)oxy) methyl)cyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (1.20 g, 1.15 mmol) in tetrahydrofuran (10 mL) was added TBAF (1M solution in tetrahydrofuran, 2.3 mL, 2.30 mmol) at room temperature. After1 h, the reaction was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (1.00 g, 93.2% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 933.1H NMR (300 MHz, DMSO-d6, ppm) δ 7.16 (d, J = 8.0 Hz, 4H), 6.86 (d, J = 8.1 Hz, 4H), 6.78 – 6.46 (m, 1H), 5.15 (d, J = 13.1 Hz, 1H), 4.71 – 4.48 (m, 2H), 4.48 – 4.20 (m, 5H), 4.19 – 3.85 (m, 3H), 3.71 (s, 6H), 3.49 – 3.34 (m, 2H), 3.05 (d, J = 13.3 Hz, 1H), 2.35 (s, 3H), 1.96 – 1.61 (m, 4H), 1.54 – 1.39 (m, 12H), 0.62 – 0.40 (m, 4H). [1195] Step 4: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((1-(hydroxymethyl)cyclopropyl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000336_0001
[1196] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((1-(hydroxymethyl)cyclopropyl)methoxy)-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (0.300 g, 0.322 mmol) and NMO (75.4 mg, 0.644 mmol) in dichloromethane (5 mL) was added TPAP (56.6 mg, 0.161 mmol) at 0 °C. The reaction was warmed to room temperature for 1 h. The reaction was quenched with saturated aqueous Na2S2O3 solution. The resulting mixture was diluted with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-35% ethyl acetate in petroleum ether) to afford the title compound (250 mg, 83.4% yield) as an off-white solid. LC-MS: (ESI, m/z): [M+H]+ = 931. [1197] Step 5: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((1-(((2,2,2-trifluoroethyl) amino)methyl) cyclopropyl)methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate [1198] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((1-(hydroxymethyl)cyclopropyl)methoxy)-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (125 mg, 0.134 mmol), 2,2,2-trifluoroethan-1-amine (14.9 mg, 0.150 mmol), Et3N (40.5 mg, 0.400 mmol) and ZnCl2 (21.8 mg, 0.160mmol) in methanol (3 mL) was stirred at 60 °C overnight. The mixture was cooled to room temperature before the addition of NaBH3CN (25.1 mg, 0.400 mmol). After 2 h, the reaction was quenched with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (0.100 g, 73.6% yield) as an off-white solid. LC-MS: (ESI, m/z): [M+H]+ = 1014. [1199] Step 6: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-((1-(((2,2,2-trifluoroethyl) amino) methyl) cyclopropyl)methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000337_0001
[1200] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((1-(((2,2,2-trifluoroethyl)amino) methyl) cyclopropyl)methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.100 g, 0.0986 mmol) in 2,2,2-trifluoroacetic acid (10 mL) was stirred at room temperature for 1 h. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 17% B to 42% B in 9 min; Wavelength: 254nm/220nm; RT1(min): 9.6) to afford the title compound (17.2 mg, 25.9% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 674.1H NMR (300 MHz, DMSO-d6, ppm) δ 6.71 – 6.37 (m, 1H), 6.02 (s, 2H), 5.19 – 4.98 (m, 1H), 4.61 – 4.44 (m, 1H), 4.38 – 4.18 (m, 2H), 3.95 (d, J = 8.8 Hz, 1H), 3.62 – 3.39 (m, 2H), 3.30 – 3.14 (m, 2H), 3.01 (d, J = 12.7 Hz, 1H), 2.77 – 2.61 (m, 2H), 2.50 – 2.39 (m, 1H), 2.32 (s, 3H), 1.90 – 1.75 (m, 1H), 1.75 – 1.51 (m, 3H), 1.44 (d, J = 6.3 Hz, 3H), 0.66 – 0.42 (m, 4H). [1201] Example 33 – Compound 64 (Isomer 1 & 2): 4-((5R,5aS,6S,9R)-12-((1-((Dimethylamino) methyl)-2,2-difluorocyclopropyl) methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro - 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-6-methyl-5- (trifluoromethyl)pyridin-2-amine
Figure imgf000338_0001
[1202] Step 1: tert-Butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3- (trifluoromethyl) pyridin-4-yl)-12-((1-((dimethylamino)methyl)-2,2-difluorocyclopropyl) methoxy) - 1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000338_0002
[1203] Under nitrogen, to a solution of (1-((dimethylamino)methyl)-2,2-difluorocyclopropyl) methanol (65.4 mg, 0.400 mmol) (intermediate 22, the faster peak) in THF (2 mL) was added NaH (63.4 mg, 1.58 mmol) at 0 °C. After 30 min, tert-butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3-(trifluoromethyl)pyridin-4-yl)-1-fluoro-12-(methylsulfonyl)-5-(trifluoromethyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (150 mg, 0.160 mmol) (intermediate 25) was added, and the reaction mixture was warmed to room temperature for 1.5 h. The reaction was quenched with saturated aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-90% EtOAc/petroleum ether) to afford 121 mg (73.9% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 1033. [1204] Step 2: 4-((5R,5aS,6S,9R)-12-((1-((Dimethylamino)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-6-methyl-5- (trifluoromethyl)pyridin-2-amine
Figure imgf000339_0001
[1205] A solution of tert-butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-12-((1-((dimethylamino)methyl)-2,2-difluorocyclopropyl) methoxy) - 1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (121 mg, 0.120 mmol) in TFA (6 mL) was stirred at 50 °C for 4 h. The solution was concentrated under vacuum, and the resulting residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5 μm; Mobile Phase A: water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 26% B to 46% B in 10 min; Wavelength: 254 nm/220 nm; RT1(min): 9.5) to afford 41.6 mg (50.6% yield) of the title compound as a white solid. [1206] Analogous to method described as above, compound 64 (Isomer 2) was prepared from the slower peak of intermediate 22. [1207] 64 (Isomer 1): LC-MS: (ESI, m/z): [M+H]+ = 693.1H NMR (500 MHz, DMSO-d6, ppm): δ 6.87 (s, 2H), 6.23 (s, 1H), 5.69 – 5.59 (m, 1H), 5.20 – 5.13 (m, 1H), 4.52 (d, J = 11.2 Hz, 1H), 4.45 (d, J = 11.2 Hz, 1H), 4.40 (d, J = 9.7 Hz, 1H), 3.62 – 3.49 (m, 2H), 3.13 (d, J = 12.8 Hz, 1H), 2.62 – 2.55 (m, 1H), 2.50 – 2.46 (m, 3H), 2.39 (d, J = 12.9 Hz, 1H), 2.17 (s, 6H), 1.90 – 1.77 (m, 3H), 1.73 – 1.56 (m, 2H), 1.55 – 1.45 (m, 1H). [1208] 64 (Isomer 2): LC-MS: (ESI, m/z): [M+H]+ = 693.1H NMR (500 MHz, DMSO-d6, ppm): δ 6.87 (s, 2H), 6.23 (s, 1H), 5.67 – 5.60 (m, 1H), 5.21 – 5.14 (m, 1H), 4.53 (d, J = 11.1 Hz, 1H), 4.44 (d, J = 11.2, 1.9 Hz, 1H), 4.40 (d, J = 9.7 Hz, 1H), 3.63 – 3.50 (m, 2H), 3.12 (d, J = 12.8 Hz, 1H), 2.98 (s, 1H), 2.63 – 2.56 (m, 1H), 2.50 – 2.45 (m, 3H), 2.41 – 2.35 (m, 1H), 2.17 (s, 6H), 1.93 – 1.77 (m, 3H), 1.74 – 1.63 (m, 1H), 1.63 – 1.55 (m, 1H), 1.55 – 1.46 (m, 1H). [1209] Example 34 – Compound 65 (Isomer 1 & 2): 5-((5R,5aS,6S,9R)-12-((1-((Dimethylamino) methyl)-2,2-difluorocyclopropyl)methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4- (trifluoromethyl)aniline [1210] Step 1: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((1-((dimethylamino)methyl)-2,2-difluorocyclopropyl)methoxy)-1- fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000340_0001
[1211] Under nitrogen, to a solution of (1-((dimethylamino)methyl)-2,2-difluorocyclopropyl) methanol (86.1 mg, 0.520 mmol, intermediate 22, the faster peak) in THF (3 mL) was added NaH (83.0 mg, 2.07 mmol) at 0 ℃. After 30 min, tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(methylsulfonyl)-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.200 g, 0.210 mmol) (intermediate 18) was added, and the solution was warmed to room temperature. After 1 h, the reaction was quenched with saturated aqueous NH4Cl solution. The mixture was diluted with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-75% EtOAc / petroleum ether) to afford 136 mg (62.5% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 1050. [1212] Step 2: 5-((5R,5aS,6S,9R)-12-((1-((Dimethylamino)methyl)-2,2-difluorocyclopropyl) methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline [1213] Under nitrogen, a solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)- 4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-12-((1-((dimethylamino)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (123 mg, 0.130 mmol) in TFA (5 mL) was stirred at room temperature for 0.5 h. The solvent was concentrated under vacuum, and the resulting residue was purified by Prep-HPLC (Column: YMC Triart C18 ExRs, 30*150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 53% B to 78% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 7.25) to afford 35.7mg (42.9% yield) of the title compound as a white solid. [1214] Analogous to method described as above, Compound 65 (Isomer 2) was prepared from the slower peak of intermediate 22. [1215] 65 (Isomer 1): LC-MS: (ESI, m/z): [M+H]+ = 710.1H NMR (500 MHz, DMSO-d6) δ 6.59- 6.47 (m, 1H), 6.09 – 6.03 (m, 2H), 5.63 (s, 1H), 5.12 – 5.19 (m, 1H), 4.55-4.42 (m, 2H), 4.39-4.34 (m, 1H), 3.61 – 3.48 (m, 2H), 3.11 (d, J = 12.8 Hz, 1H), 3.01 (s, 1H), 2.64 – 2.53 (m, 1H), 2.40 (s, 1H), 2.34 (d, J = 10.6 Hz, 3H), 2.16 (s, 6H), 1.94-1.78 (m, 3H), 1.74 – 1.58 (m, 2H), 1.55-1.48 (m, 1H). [1216] 65 (Isomer 2): LC-MS: (ESI, m/z): [M+H]+ = 710.1H NMR (500 MHz, DMSO-d6) δ 6.62- 6.47 (m, 1H), 6.11 – 6.01 (m, 2H), 5.63 (s, 1H), 5.12 – 5.19 (m, 1H), 4.65-4.53 (m, 2H), 4.41-4.36 (m, 1H), 3.61 – 3.48 (m, 2H), 3.11 (d, J = 12.8 Hz, 1H), 3.02 (s, 1H), 2.64 – 2.53 (m, 1H), 2.40 (s, 1H), 2.34 (d, J = 10.6 Hz, 3H), 2.16 (s, 6H), 1.94-1.78 (m, 3H), 1.74 – 1.58 (m, 2H), 1.55-1.48 (m, 1H). [1217] Example 35 – Compound 66:(1-((((5R,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)-2,2- difluorocyclopropyl)methanol
[1218] Step 1: tert-Butyl (5R,5aS,6S,9R)-2-chloro-1-fluoro-12-(methylsulfonyl)-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000342_0001
[1219] Under nitrogen, to a solution of tert-butyl (5R,5aS,6S,9R)-2-chloro-1-fluoro-12- (methylthio)-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate (1.0 g, 1.87 mmol, intermediate 13) in ethyl acetate (10mL) was added m-CPBA (964.5 mg, 5.61 mmol) at 0 °C. The resulting solution was stirred at room temperature for 1 h. The reaction was quenched with aq. Na2S2O3 and then extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to provide the crude product. The crude product was purified by flash chromatography on silica gel (0-50% EtOAc in petroleum ether) to afford the title compound 810 mg (76% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 568. [1220] Step 2: tert-Butyl (5R,5aS,6S,9R)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-2-chloro-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000343_0001
[1221] To a solution of tert-butyl (5R,5aS,6S,9R)-2-chloro-1-fluoro-12-(methylsulfonyl)-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (500 mg, 0.880 mmol) and (1-(((tert- butyldiphenylsilyl)oxy)methyl)-2,2-difluorocyclopropyl)methanol (497 mg, 1.32 mmol, intermediate 20) in toluene (3 mL) was added tBuONa (169 mg, 1.76 mmol) at 0 °C, and the mixture was stirred for 1 hour at room temperature. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-100% EtOAc in petroleum ether) to afford the title compound (640 mg, 84% yield) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 865. [1222] Step 3: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2-difluorocyclopropyl) methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (two isomers)
Figure imgf000343_0002
[1223] Under nitrogen, a solution of tert-butyl (5R,5aS,6S,9R)-12-((1-(((tert-butyldiphenylsilyl) oxy)methyl)-2,2-difluorocyclopropyl)methoxy)-2-chloro-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (640 mg, 0.740 mmol), (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)boronic acid (530 mg, 1.11 mmol, intermediate 4), K3PO4 (1.5M aqueous solution, 2.5 mL, 3.75 mmol) and cataCXium A Pd G3 (108 mg, 0.148 mmol) in THF (12.5 mL) was stirred for 3 hours at 60 °C. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford a mixture of diastereomers (840 mg) as a light brown solid. The two diastereomers were separated by Chiral-Prep-SFC with the following conditions: (Column:( (S, S)-WHELK-O1-Kromasil, 5*25 cm, 10 μm; Mobile Phase A: CO2, Mobile Phase B: IPA; Flow rate: 90 mL/min; Gradient: isocratic 35% B; Column Temperature(°C): 35; Back Pressure(bar): 100; Wavelength: 220 nm; RT1(min): 18.95; RT2(min): 21.17; Sample Solvent: MEOH; Injection Volume: 1 mL; Number Of Runs: 40) to afford the faster peak (270 mg, 29% yield, the faster peak) and the slower peak (250 mg, 27% yield, the slower peak) as white solids. LC-MS: (ESI, m/z): [M+H]+ = 1262. [1224] Step 4: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((2,2-difluoro-1-(hydroxymethyl)cyclopropyl)methoxy)-1-fluoro-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (two isomers)
Figure imgf000344_0001
[1225] To a solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (200 mg, 0.158 mmol, the faster peak of last step) in tetrahydrofuran (4 mL) was added TBAF (1M solution in tetrahydrofuran, 0.5 mL, 0.500 mmol) and the solution was stirred for 2 hours at room temperature. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (120 mg, 74% yield) as a light brown solid. LC-MS: (ESI, m/z): [M+H]+ = 1023. [1226] Step 5: (1-((((5R,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)-2,2-difluorocyclopropyl)methanol [1227] A solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((2,2-difluoro-1-(hydroxymethyl)cyclopropyl)methoxy)-1- fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (30.7 mg, 0.0300 mmol) in TFA (1 mL) was stirred at room temperature for 0.5 hours. The resulting mixture was concentrated under vacuum. The crude product was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water(10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 14% B to 38% B in 11 min; Wavelength: 254nm/220nm; RT1(min): 9) to afford 6.5 mg (32% yield) of Compound 66 as a white solid. [1228] 66: LC-MS: (ESI, m/z): [M+H]+ = 682.1H NMR (500 MHz, DMSO-d6) δ 6.55 (d, J = 39.2 Hz, 1H), 6.11 (s, 2H), 5.71 (s, 1H), 5.26 - 5.19 (m, 1H), 5.15 – 5.09 (m, 1H), 4.61 (d, J = 11.4 Hz, 1H), 4.54 (d, J = 9.6 Hz, 1H), 4.42 (d, J = 11.5, 2.0 Hz, 1H), 3.78 (s, 1H), 3.70 (d, J = 6.3 Hz, 1H), 3.67 – 3.55 (m, 2H), 3.24 (d, J = 13.4 Hz, 1H), 2.33 (s, 3H), 2.06 – 1.86 (m, 2H), 1.85 – 1.63 (m, 3H), 1.62 – 1.54 (m, 1H). [1229] Example 36 – Compound 67 (Isomer 1 & 2): (1-((((5S,5aS,6S,9R)-2-(6-Amino-2-methyl- 3-(trifluoromethyl) pyridin-4-yl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)-2,2- difluorocyclopropyl)methanol
Figure imgf000345_0001
[1230] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-12-((2,2-difluoro-1-((trityloxy)methyl)cyclopropyl)methoxy)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000346_0001
[1231] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (110 mg, 0.123 mmol, intermediate 25) and (2,2-difluoro-1-((trityloxy)methyl)cyclopropyl)methanol (70.2 mg, 0.180 mmol, intermediate 21, enantiomer 1) in toluene (3 mL) was added t-BuONa (24.6 mg, 0.260 mmol) at 0 °C. The solution was stirred at room temperature for 1 h. The solution was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-70% EtOAc / petroleum ether) to afford 115 mg (78% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 1194. [1232] Step 2: (1-((((5S,5aS,6S,9R)-2-(6-Amino-2-methyl-3-(trifluoromethyl)pyridin-4-yl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)-2,2-difluorocyclopropyl)methyl 2,2,2- trifluoroacetate
Figure imgf000346_0002
[1233] A solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-12-((2,2-difluoro-1-((trityloxy)methyl)cyclopropyl)methoxy)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (50.0 mg, 0.0400 mmol) in TFA (2 mL) was stirred at 50 °C for 6 hours. The solvent was concentrated under vacuum to afford 68.5 mg (crude) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 708. [1234] Step 3: (1-((((5S,5aS,6S,9R)-2-(6-Amino-2-methyl-3-(trifluoromethyl)pyridin-4-yl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)-2,2-difluorocyclopropyl)methanol [1235] To a solution of (1-((((5S,5aS,6S,9R)-2-(6-amino-2-methyl-3-(trifluoromethyl)pyridin-4- yl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)-2,2-difluorocyclopropyl)methyl 2,2,2- trifluoroacetate (40.0 mg, 0.0600 mmol) in THF (2 mL) was added K2CO3 (1 M in water) to adjust the pH to 10. The solution was stirred at room temperature for 10 min. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: water(10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 63% B to 84% B in 10 min; Wavelength: 254 nm/220 nm; RT1(min): 9.78) to afford 6.5 mg (18% yield) 67 (Isomer 1) (mixture of C2 epimers) as a white solid. [1236] Analogous to method described as above, 67 (Isomer 2) was prepared from the intermediate 25 and enantiomer 2 of intermediate 21. [1237] 67 (Isomer 1): LC-MS: (ESI, m/z): [M+H]+ = 612.1H NMR (300 MHz, DMSO-d6, ppm): δ 6.83 (s, 2H), 6.24 (s, 1H), 5.16 – 5.04 (m, 2H), 4.62 – 4.49 (m, 2H), 4.44 – 4.34 (m, 1H), 4.01 – 3.92 (m, 1H), 3.64 – 3.49 (m, 3H), 3.49 – 3.41 (m, 1H), 3.03 (d, J = 12.8 Hz, 1H), 2.86 (s, 1H), 2.51 – 2.43 (m, 3H), 1.89 – 1.75 (m, 1H), 1.74 – 1.50 (m, 5H), 1.45 (d, J = 6.3 Hz, 3H). [1238] 67 (Isomer 2): LC-MS: (ESI, m/z): [M+H]+ = 612.1H NMR (500 MHz, DMSO-d6, ppm): δ 6.83 (s, 2H), 6.24 (s, 1H), 5.16 – 5.04 (m, 2H), 4.62 – 4.48 (m, 2H), 4.44 – 4.34 (m, 1H), 3.98 (d, J = 8.7 Hz, 1H), 3.64 – 3.54 (m, 3H), 3.52 – 3.44 (m, 1H), 3.05 (d, J = 12.8 Hz, 1H), 2.51 – 2.43 (m, 3H), 1.88 – 1.77 (m, 1H), 1.76 – 1.49 (m, 5H), 1.45 (d, J = 6.3 Hz, 3H). [1239] Example 37 – Compound 68: 5-((5S,5aS,6S,9R)-12-((2,2-Difluoro-1-(((2-methoxyethyl) (methyl) amino) methyl) cyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4- (trifluoromethyl)aniline
Figure imgf000347_0001
[1240] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((2,2-difluoro-1-(((2-methoxyethyl) (methyl) amino) methyl) cyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (two isomers)
Figure imgf000348_0001
[1241] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)- 4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-12-((2,2-difluoro-1- (hydroxymethyl)cyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (50.0 mg, 0.0516 mmol, intermediate 28) and DIPEA (20.1 mg, 0.155 mmol) in dichloromethane (2 mL) was added Tf2O (29.1 mg, 0.103 mmol) at -10 °C and stirred for 10 minutes. Then a solution of 2-methoxy-N- methylethan-1-amine (46.0 mg, 0.516 mmol) in dichloromethane (0.5 mL) was added dropwise at - 10 °C and stirred for 1 hour at room temperature. The reaction mixture was diluted with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by reverse phase flash chromatography on pre-packed C18 column (gradient: 0-100% CH3CN in water (0.05% NH4HCO3) to afford the title compound (37.0 mg, 68.9% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 1041. [1242] Step 2: 5-((5S,5aS,6S,9R)-12-((2,2-Difluoro-1-(((2- methoxyethyl)(methyl)amino)methyl)cyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro- 3-methyl-4-(trifluoromethyl)aniline
Figure imgf000348_0002
[1243] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((1-((dimethylamino)methyl)-2,2-difluorocyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (37.0 mg, 0.0356 mmol) in 2,2,2-trifluoroacetic acid (10 mL) was stirred for 30 minutes at room temperature. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 42% B to 64% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 9) to afford 68 (6.60 mg, 26.5% yield) as a white solid (Mixture of C2 epimers). LC-MS: (ESI, m/z): [M+H]+ = 700.1H NMR (500 MHz, DMSO-d6, ppm) δ 6.66 – 6.42 (m, 1H), 6.03 (s, 2H), 5.13 – 5.05 (m, 1H), 4.56 – 4.39 (m, 3H), 3.96 (d, J = 8.7 Hz, 1H), 3.56 (d, J = 5.7 Hz, 1H), 3.45 (d, J = 6.2 Hz, 1H), 3.36 (d, J = 7.1 Hz, 2H), 3.14 (s, 3H), 3.03 (d, J = 12.8 Hz, 1H), 2.84 (bs, 1H), 2.78 – 2.69 (m, 1H), 2.58 – 2.53 (m, 2H), 2.49 – 2.44 (m, 1H), 2.32 (s, 3H), 2.21 (s, 3H), 1.87 – 1.74 (m, 2H), 1.74 – 1.59 (m, 2H), 1.59 – 1.47 (m, 2H), 1.44 (d, J = 6.3 Hz, 3H). [1244] Each compound in Table 9 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described for Example 37. Table 9:
Figure imgf000349_0001
[1245] Example 38 – Compound 71: 4-((5S,5aS,6S,9R)-12-((1-((Dimethylamino)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-fluoro-6-methyl-5- (trifluoromethyl)pyridin-2-amine
[1246] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-3-fluoro-6- methylpyridin-4-yl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000350_0001
[1247] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-12-((1-(((tert- butyldiphenylsilyl)oxy)methyl)-2,2-difluorocyclopropyl)methoxy)-2-chloro-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (1.00 g, 1.23 mmol, intermediates 30 & 31/step 1), 3-fluoro-N,N-bis(4- methoxybenzyl)-6-methyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-2-amine (1.21 g, 2.46 mmol, intermediate 16), K3PO4 (1.5M aqueous solution, 4 mL, 6.00 mmol) and cataCXium A Pd G3 (179 mg, 0.246 mmol) in tetrahydrofuran (20 mL) was stirred for 1 hour at 60 °C. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-40% EtOAc in petroleum ether) to afford the title compound (1.30 g, 92.7% yield) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 1141. [1248] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-3-fluoro-5-iodo-6- methylpyridin-4-yl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000351_0001
[1249] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-3-fluoro-6- methylpyridin-4-yl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (1.30 g, 1.14 mmol) in AcOH (20 mL) was added NIS (333 mg, 1.48 mmol) at room temperature. The resulting solution was stirred for 1 hour at room temperature. The reaction was quenched with saturated Na2S2O3 aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-50% EtOAc in petroleum ether) to afford the title compound (1.37 g, 94.9% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 1266. [1250] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-3-fluoro-6-methyl-5- (trifluoromethyl)pyridin-4-yl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (two isomers)
Figure imgf000351_0002
[1251] Under nitrogen, to a solid mixture of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4- methoxybenzyl)amino)-3-fluoro-5-iodo-6-methylpyridin-4-yl)-12-((1-(((tert- butyldiphenylsilyl)oxy)methyl)-2,2-difluorocyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (1.37 g, 1.08 mmol), Cu(O2CCF2SO2F)2 (6.77 g, 16.2 mmol) and Cu power (1.03 g, 16.2 mmol) was added ice-cold N,N-dimethylacetamide (100 mL) at 0 °C and stirred for 1 hour at room temperature. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-40% EtOAc in petroleum ether) to afford a mixture of diastereomers (981 mg, 75.1% yield) as a yellow solid. Two diastereomers were separated by Chiral-Prep-SFC with the following conditions: (Column: (S, S)-Whelk-O 15 μm Kromasil, 3*25 cm, 5 μm; Mobile Phase A: CO2, Mobile Phase B: IPA: ACN=1: 1; Flow rate: 100 mL/min; Gradient: isocratic 30% B; Column Temperature(oC): 35; Back Pressure(bar): 100; Wavelength: 220 nm; RT1(min): 9.22; RT2(min): 11.3) to afford isomer 1 (357 mg, 27.3% yield, the faster peak) and isomer 2 (388 mg, 29.7% yield, the slower peak) as white solids. LC-MS: (ESI, m/z): [M+H]+ = 1209. [1252] Step 4: tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-3-fluoro-6-methyl-5- (trifluoromethyl)pyridin-4-yl)-12-((2,2-difluoro-1-(hydroxymethyl)cyclopropyl)methoxy)-1-fluoro- 5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate
Figure imgf000352_0001
[1253] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-3-fluoro-6- methyl-5-(trifluoromethyl)pyridin-4-yl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (150 mg, 0.124 mmol, isomer 1 of last step) in tetrahydrofuran (4 mL) was added TBAF (1M solution in tetrahydrofuran, 0.4 mL, 0.400 mmol) at room temperature and stirred for 1 hour. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-15% methanol in dichloromethane) to afford the title compound (90.0 mg, 74.8% yield 1) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 970. [1254] Step 5: tert-Butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-3-fluoro-6-methyl-5- (trifluoromethyl)pyridin-4-yl)-12-((1-((dimethylamino)methyl)-2,2-difluorocyclopropyl)methoxy)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000353_0001
[1255] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4- methoxybenzyl)amino)-3-fluoro-6-methyl-5-(trifluoromethyl)pyridin-4-yl)-12-((2,2-difluoro-1- (hydroxymethyl)cyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (90.0 mg, 0.0928 mmol) and DIPEA (36.1 mg, 0.278 mmol) in dichloromethane (5 mL) was added Tf2O (52.4 mg, 0.186 mmol) dropwise at -10 °C and stirred for 10 minutes. Then dimethylamine (2M solution in THF, 0.5 mL, 1.00 mmol) was added dropwise at -10 °C and stirred for 1 hour at room temperature. The reaction mixture was diluted with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-15% methanol in dichloromethane) to afford the title compound (60.0 mg, 64.8% yield) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 997. [1256] Step 6: 4-((5S,5aS,6S,9R)-12-((1-((Dimethylamino)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-fluoro-6-methyl-5- (trifluoromethyl)pyridin-2-amine
Figure imgf000353_0002
[1257] A solution of tert-butyl (5S,5aS,6S,9R)-2-(2-(bis(4-methoxybenzyl)amino)-3-fluoro-6- methyl-5-(trifluoromethyl)pyridin-4-yl)-12-((1-((dimethylamino)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (60.0 mg, 0.0602 mmol) in 2,2,2-trifluoroacetic acid (10 mL) was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 35% B to 57% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 8.5) to afford 73 (20.8 mg, 52.6% yield) as a white solid (Mixture of C2 epimers). LC-MS: (ESI, m/z): [M+H]+ = 657.1H NMR (300 MHz, DMSO-d6, ppm) δ 7.32 – 7.07 (m, 2H), 5.17 – 5.02 (m, 1H), 4.66 – 4.36 (m, 3H), 4.05 – 3.93 (m, 1H), 3.63 – 3.40 (m, 2H), 3.05 (d, J = 13.0 Hz, 1H), 2.86 – 2.70 (m, 1H), 2.67 – 2.55 (m, 1H), 2.49 – 2.42 (m, 3H), 2.37 (d, J = 12.8 Hz, 1H), 2.17 (s, 6H), 1.90 – 1.74 (m, 2H), 1.74 – 1.48 (m, 4H), 1.44 (d, J = 6.3 Hz, 3H). [1258] Example 39 – Compound 72: 5-((5R,5aS,6S,9R)-12-((1-((Dimethylamino)methyl)-2,2- difluorocyclopropyl) methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4- (trifluoromethyl)aniline (two isomers)
Figure imgf000354_0001
[1259] Step 1: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((1-((dimethylamino)methyl)-2,2-difluorocyclopropyl)methoxy)-1- fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000354_0002
[1260] Under nitrogen, to a solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-12-((2,2-difluoro-1- (hydroxymethyl)cyclopropyl)methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (50.0 mg, 0.0489 mmol, intermediate 30) and DIPEA (19.0 mg, 0.147 mmol) in dichloromethane (2 mL) was added Tf2O (27.6 mg, 0.0980 mmol) at -10 °C and stirred for 5 minutes. Then dimethylamine (2M solution in THF, 0.25 mL, 0.500 mmol) was added dropwise at -10 °C and stirred for 1 hour at room temperature. The reaction mixture was diluted with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (40.0 mg, 77.9% yield) as a light brown solid. LC-MS: (ESI, m/z): [M+H]+ = 1050. [1261] Step 2: 5-((5R,5aS,6S,9R)-12-((1-((Dimethylamino)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4- (trifluoromethyl)aniline (formate)
Figure imgf000355_0001
[1262] A solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((1-((dimethylamino)methyl)-2,2-difluorocyclopropyl) methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (40.0 mg, 0.0381 mmol) in 2,2,2- trifluoroacetic acid (10 mL) was stirred for 30 minutes at room temperature. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: Xselect CSH OBD Column, 30*150mm, 5um; Mobile Phase A: Water (0.1% FA), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 7% B to 23% B in 11 min; Wavelength: 254nm/220nm) to afford 72 (3.40 mg, 11.8% yield) as a white solid (Mixture of C2 epimers). LC-MS: (ESI, m/z): [M-FA+H]+ = 710.1H NMR (400 MHz, DMSO-d6, ppm) δ 8.30 (s, 1H), 6.72 – 6.40 (m, 1H), 6.06 (s, 2H), 5.84 – 5.49 (m, 1H), 5.26 – 5.10 (m, 1H), 4.65 – 4.30 (m, 3H), 3.72 – 3.20 (m, 3H), 3.11 (d, J = 12.8 Hz, 1H), 2.58 (d, J = 12.7 Hz, 1H), 2.38 (d, J = 13.3 Hz, 1H), 2.36 – 2.30 (s, 3H), 2.16 (s, 6H), 1.93 – 1.75 (m, 3H), 1.75 – 1.56 (m, 2H), 1.56 – 1.45 (m, 1H). [1263] Example 40 – Compound 73: (1-((((5R,5aS,6S,9R)-2-(6-Amino-2-methyl-3- (trifluoromethyl) pyridin-4-yl)-1-fluoro-5-(trifluoromethyl)-5a,6, 7, 8, 9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)-2,2- difluorocyclopropyl)methanol
[1264] Step 1: tert-Butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3- (trifluoromethyl) pyridin-4-yl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl) methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000356_0001
[1265] Under nitrogen, a solution of (1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methanol (320 mg, 0.850 mmol, intermediate 27) in THF (4mL) was added NaH (170 mg, 4.25 mmol) at 0 ℃. The solution was stirred for 30 min at 0 ℃. Then tert-butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3-(trifluoromethyl)pyridin-4-yl)-1- fluoro-12-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (484 mg, 0.510 mmol, intermediate 17) was added. The solution was stirred at room temperature for 2 hours. The reaction was quenched with NH4Cl aqueous and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by C18 column (solvent gradient: 0-98% ACN in water (0.05% NH4HCO3)) to afford 401 mg the mixture of diastereomers as a yellow solid. The two diastereomers were separated by Prep-SFC (Column: (S, S)-Whelk-O 15μm Kromasil, 3*25 cm, 5 μm; Mobile Phase A: CO 2 , Mobile Phase B: IPA: ACN=2: 1; Flow rate: 100 mL/min; Gradient: isocratic 25% B; Column Temperature(℃): 35; Back Pressure(bar): 100; Wavelength: 220 nm; RT1(min): 9.1; RT2(min): 10.15; Sample Solvent: MeOH(0.1% 2M NH3-MeOH)) to afford 132 mg (21% yield) of the faster peak and 221 mg (35% yield) of the slower peak as a yellow solids. LC-MS: (ESI, m/z): [M+H]+ = 1244. [1266] Step 2: tert-Butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-12-((2,2-difluoro-1-(hydroxymethyl)cyclopropyl)methoxy)-1-fluoro- 5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000357_0001
[1267] Under nitrogen, a solution of tert-butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3-(trifluoromethyl)pyridin-4-yl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (30.1 mg, 0.0200 mmol, the faster peak of last step) in THF (1mL) was added TBAF (0.07 mL, 1 M in THF) at 0 ℃, and the mixture was stirred for 1 h at room temperature. The resulting solution was partitioned between water and EtOAc. The separated organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-55% EtOAc / petroleum ether) to afford 21.0 mg (86% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 1006. [1268] Step 3: (1-((((5R,5aS,6S,9R)-2-(6-Amino-2-methyl-3-(trifluoromethyl) pyridin-4-yl)-1- fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)-2,2-difluorocyclopropyl)methanol
Figure imgf000357_0002
[1269] A solution of tert-butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-12-((2,2-difluoro-1-(hydroxymethyl)cyclopropyl)methoxy)-1-fluoro- 5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (21.0 mg, 0.0209 mmol) in TFA (1mL) was stirred for 4 h at 50 ℃. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: Water (10mmol/L NH4HCO3); Mobile Phase A: ACN, Mobile Phase B: 60 mL/min; Flow rate: 15% B to 37% B in 13 min; Gradient: isocratic 9.5; Wavelength: 254nm/220nm; XBridge Prep OBD C18 Column, 30*150 mm, 5μm; RT1(min): 2) to afford 8.5 mg (61% yield) of the title compound as a white solid (Mixture of C2 epimers). [1270] 73: LC-MS: (ESI, m/z): [M+H]+ = 666.1H NMR (400 MHz, DMSO-d6) δ 6.88 (s, 2H), 6.23 (s, 1H), 5.69-5.58 (m, 1H), 5.20-5.15 (m, 1H), 5.10 (t, J = 5.7 Hz, 1H), 4.60 (d, J = 11.3 Hz, 1H), 4.46-4.37 (m, 2H), 3.63-3.56 (m, 4H), 3.12 (d, J = 12.9 Hz, 15Hz, 1H), 2.94 (s, 1H), 2.49-2.47 (m, 3H), 1.88-1.81 (m, 2H), 1.75-1.54 (m, 4H). [1271] Examples 41 – Compound 74 (Isomer 1 & 2): 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4- fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)-2,2- difluorocyclopropyl)ethan-1-ol
[1272] Step 1: tert-Butyl (5S,5aS,6S,9R)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-2-chloro-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000359_0001
[1273] To a solution of (1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2-difluorocyclopropyl) methanol (1.6 g, 4.24 mmol, intermediate 27) in tetrahydrofuran (40 mL) was added NaH (60% dispersion in mineral oil, 848 mg, 21.2 mmol) at 0°C, and the mixture was stirred at room temperature for 30 minutes. Then tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- (methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (1.09 g, 2.12 mmol, intermediate 6) was added, and the mixture was stirred at room temperature for 1 hour. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-20% ethyl acetate in petroleum ether) to afford the title compound (1.70 g, 99% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 810. [1274] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2-difluorocyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (two isomers)
Figure imgf000360_0001
[1275] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-12-((1-(((tert-butyldiphenylsilyl) oxy) methyl)-2,2-difluorocyclopropyl)methoxy)-2-chloro-1-fluoro-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (1.70 g, 2.10 mmol), (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)boronic acid (3.01 g, 6.30 mmol, intermediate 4), K3PO4 (1.5M aqueous solution, 7 mL, 10.5 mmol) and cataCXium A Pd G3 (320 mg, 0.440 mmol) in tetrahydrofuran (35 mL) was stirred at 60 °C for 3 hours. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-30% ethyl acetate in petroleum ether) to afford a mixture of diastereomers (2.40 g, 95% yield) as a yellow solid. Two diastereomers were separated by Chiral-Prep-SFC with the following conditions: (Column: (S, S)-Whelk-O 15μm Kromasil 3*25 cm, 5 μm; Mobile Phase A: CO2, Mobile Phase B: IPA (0.1% 2M NH3-MeOH); Flow rate: 100 mL/min; Gradient: isocratic 50% B; Column Temperature(oC): 35; Back Pressure(bar): 100; Wavelength: 220 nm; RT1(min): 5.53; RT2(min): 6.6; Sample Solvent: ACN; Injection Volume: 1.9 mL; Number Of Runs: 7) to afford the faster peak (1.10 g, 43% yield) and the slower peak (1.04 g, 41% yield) as white solids. LC-MS: (ESI, m/z): [M+H]+ = 1208. [1276] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((2,2-difluoro-1-(hydroxymethyl)cyclopropyl)methoxy)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate
Figure imgf000361_0001
[1277] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((1-(((tert-butyldiphenylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (1.10 g, 0.911 mmol, the faster peak of last step) in tetrahydrofuran (30 mL) was added TBAF (1M solution in tetrahydrofuran, 3 mL, 3.00 mmol), and the mixture was stirred at room temperature for 2 hours. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-50% ethyl acetate in petroleum ether) to afford the title compound (810 mg, 92% yield, compound A) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 969. [1278] Step 4: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((2,2-difluoro-1-formylcyclopropyl)methoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000361_0002
[1279] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((2,2-difluoro-1-(hydroxymethyl)cyclopropyl)methoxy)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (480 mg, 0.496 mmol, compound A) and NMO (58.1 mg, 0.496 mmol) in dichloromethane (10 mL) was added TPAP (87.2 mg, 0.248 mmol) at 0 °C, and the mixture was stirred at room temperature for 1 hour. The reaction was quenched with saturated Na2S2O3 aqueous solution. The reaction mixture was diluted with water and extracted with dichloromethane. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford compound B (270 mg, 56% yield) as a light brown solid. LC-MS: (ESI, m/z): [M+H]+ = 967. [1280] Step 5: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((2,2-difluoro-1-(1-hydroxyethyl)cyclopropyl)methoxy)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate
Figure imgf000362_0001
[1281] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-12-((2,2-difluoro-1- formylcyclopropyl) methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (270 mg, 0.280 mmol, compound B of last step) in tetrahydrofuran (2 mL) was added MeMgBr (3M solution in Et2O, 0.14 mL, 0.420 mmol) dropwise at -40 °C, and the mixture was stirred at room temperature for 1 hour. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by reverse phase flash chromatography on pre-packed C18 column (gradient: 0-100% CH3CN in water (0.05% NH4HCO3)) to afford a mixture of diastereomers (200 mg, 72.7% yield) as a white solid. Separation by Chiral-Prep-HPLC with the following conditions: (Column: CHIRALPAK IC, 2*25 cm, 5 μm; Mobile Phase A: Hex (0.5% 2M NH3-MeOH)--HPLC, Mobile Phase B: EtOH--HPLC; Flow rate: 20 mL/min; Gradient: isocratic 90; Wavelength: 220/254 nm; RT1(min): 14; RT2(min): 22.893; Sample Solvent: EtOH--HPLC; Injection Volume: 0.8 mL; Number Of Runs: 25) afforded compound C (50.0 mg, 18% yield, the faster peak) and compound D (75.0 mg, 27% yield, the slower peak) as white solids. LC-MS: (ESI, m/z): [M+H]+ = 983. [1282] Step 6: 1-(1-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)-2,2-difluorocyclopropyl)ethan-1-ol
Figure imgf000363_0001
[1283] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((2,2-difluoro-1-(1-hydroxyethyl)cyclopropyl)methoxy)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (50.0 mg, 0.0509 mmol, compound C of last step) in 2,2,2-trifluoroacetic acid (10 mL) was stirred at room temperature for 30 minutes. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 31% B to 53% B in 10 min; Wavelength: 254nm/220nm) to afford 74 (Isomer 1) (17.8 mg, 54% yield) as a white solid. [1284] Analogous to the method described as above, 74 (Isomer 2) (10.1 mg, 21% yield) was prepared from compound D of last step (75.0 mg, 0.0764 mmol) after purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 31% B to 53% B in 10 min; Wavelength: 254nm/220nm) as a white solid. [1285] 74 (Isomer 1): LC-MS: (ESI, m/z): [M+H]+ = 643.1H NMR (300 MHz, DMSO-d6, ppm) δ 6.71 – 6.41 (m, 1H), 6.01 (s, 2H), 5.20 – 5.03 (m, 2H), 5.01 – 4.87 (m, 1H), 4.65 – 4.47 (m, 1H), 4.22 – 4.10 (m, 1H), 3.96 (d, J = 8.7 Hz, 1H), 3.73 – 3.60 (m, 1H), 3.60 – 3.50 (m, 1H), 3.45 (d, J = 5.7 Hz, 1H), 3.04 (d, J = 12.8 Hz, 1H), 2.75 (bs, 1H), 2.33 (s, 3H), 1.91 – 1.77 (m, 1H), 1.77 – 1.49 (m, 5H), 1.44 (d, J = 6.3 Hz, 3H), 1.26 (d, J = 6.6 Hz, 3H). [1286] 74 (Isomer 2): LC-MS: (ESI, m/z): [M+H]+ = 643.1H NMR (300 MHz, DMSO-d6, ppm) δ 6.76 – 6.37 (m, 1H), 6.02 (s, 2H), 5.18 – 5.00 (m, 2H), 4.73 (d, J = 12.1 Hz, 1H), 4.63 – 4.47 (m, 1H), 4.39 (d, J = 11.9 Hz, 1H), 3.96 (d, J = 8.7 Hz, 1H), 3.77 – 3.62 (m, 1H), 3.54 (d, J = 12.9 Hz, 1H), 3.50 – 3.41 (m, 1H), 3.03 (d, J = 12.7 Hz, 1H), 2.76 (bs, 1H), 2.32 (s, 3H), 1.91 – 1.74 (m, 1H), 1.74 – 1.48 (m, 5H), 1.44 (d, J = 6.3 Hz, 3H), 1.25 (d, J = 6.4 Hz, 3H). [1287] Examples 42-46 – Compounds 75-79:
[1288] Example 42 – Compound 75: 1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-N,N-dimethylazetidin-3-amine
Figure imgf000364_0001
[1289] Step 1: Into a 10 mL vial, N,N-dimethylazetidin-3-amine hydrochloride (0.060 mmol, 10.9 mg) and cesium carbonate (0.120 mmol, 39.0 mg) were placed in THF (1.0 mL). Followed by tert- butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.044 mmol, 40.0 mg). The mixture was stirred at RT. Upon completion, the reaction was quenched with sat. ammonium chloride, extracted with iPrOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting solid was used as is for the next deprotection step. [1290] Step 2: A solution of the above residue containing tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-12-(3- (dimethylamino)azetidin-1-yl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate in trifluoroacetic acid (1.0 mL) was stirred at RT for 1 h. After completion, the solvent was removed under vacuum. The resulting residue was diluted with DCM and adjusted pH to 7 with sat. NaHCO3 solution. The resulting solution was extracted with DCM. The organic layer was washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by prep-HPLC with C18 column eluting with water/MeCN to afford 1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-N,N-dimethylazetidin-3-amine (11.5 mg, 43% yield).1H NMR (400 MHz, DMSO) δ 6.57 (s, 1H), 5.96 (s, 2H), 5.10 (dd, J = 12.7, 2.6 Hz, 1H), 4.38 (dd, J = 9.1, 6.2 Hz, 1H), 4.13 – 4.05 (m, 2H), 3.88 (d, J = 9.7 Hz, 3H), 3.51 (d, J = 5.6 Hz, 1H), 3.40 (d, J = 5.8 Hz, 1H), 3.13 (td, J = 6.8, 3.4 Hz, 1H), 2.94 (d, J = 12.7 Hz, 1H), 2.30 (s, 4H), 2.12 (s, 6H), 1.91 (s, 1H), 1.68 – 1.49 (m, 3H), 1.41 (d, J = 6.3 Hz, 3H). LC-MS: (ESI, m/z): 591.3 [M+H]+ [1291] Example 43 – Compound 76: 1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-N,N,3-trimethylazetidin-3-amine
Figure imgf000365_0001
[1292] Step 1: Into a 10 mL vial, N,N,3-trimethylazetidin-3-amine hydrochloride (0.080 mmol, 15.8 mg) and cesium carbonate (0.160 mmol, 52.2 mg) were placed in THF (1.0 mL). Followed by tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.055 mmol, 50.0 mg). The mixture was stirred at RT. Upon completion, the reaction was quenched with sat. ammonium chloride, extracted with iPrOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting solid was used as is for the next deprotection step. [1293] Step 2: A solution of the above residue containing tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-12-(3-(dimethylamino)-3- methylazetidin-1-yl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate in trifluoroacetic acid (1.0 mL) was stirred at RT for 1 h. After completion, the solvent was removed under vacuum. The resulting residue was diluted with DCM and adjusted pH to 7 with sat. NaHCO3 solution. The resulting solution was extracted with DCM. The organic layer was washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by prep-HPLC with C18 column eluting with water/MeCN to afford 1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-N,N,3-trimethylazetidin-3-amine (8.4 mg, 26% yield). 1H NMR (400 MHz, DMSO) δ 6.57 (s, 1H), 5.96 (s, 2H), 5.10 (dd, J = 12.8, 2.6 Hz, 1H), 4.38 (dt, J = 13.2, 6.4 Hz, 1H), 3.88 (d, J = 9.2 Hz, 3H), 3.77 – 3.69 (m, 2H), 3.50 (d, J = 5.6 Hz, 1H), 3.39 (d, J = 5.9 Hz, 1H), 2.93 (d, J = 12.7 Hz, 1H), 2.31 (s, 3H), 2.11 (s, 6H), 1.90 (s, 1H), 1.65 – 1.49 (m, 3H), 1.41 (d, J = 6.2 Hz, 3H), 1.24 (s, 3H). LC-MS: (ESI, m/z): 605.2 [M+H]+ [1294] Example 44 – Compound 77: (R)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-N,N-dimethylpyrrolidin-3-amine
Figure imgf000366_0001
[1295] Step 1: Into a 10 mL vial, (3R)-N,N-dimethylpyrrolidin-3-amine (0.080 mmol, 9.4 mg) and cesium carbonate (0.080 mmol, 26.1 mg) were placed in THF (1.0 mL). Followed by tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.055 mmol, 50.0 mg). The mixture was stirred at RT. Upon completion, the reaction was quenched with sat. ammonium chloride, extracted with iPrOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting solid was used as is for the next deprotection step. [1296] Step 2: A solution of the above residue containing tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-12-((R)-3- (dimethylamino)pyrrolidin-1-yl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate in trifluoroacetic acid (1.0 mL) was stirred at RT for 1 h. After completion, the solvent was removed under vacuum. The resulting residue was diluted with DCM and adjusted pH to 7 with sat. NaHCO3 solution. The resulting solution was extracted with DCM. The organic layer was washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by prep-HPLC with C18 column eluting with water/MeCN to afford (R)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-N,N-dimethylpyrrolidin-3- amine (4.9 mg, 15% yield). 1H NMR (400 MHz, DMSO) δ 6.58 (s, 1H), 5.95 (s, 2H), 5.10 (dd, J = 12.8, 2.6 Hz, 1H), 4.37 (t, J = 7.8 Hz, 1H), 3.91 – 3.78 (m, 4H), 3.51 (s, 1H), 3.46 (d, J = 8.3 Hz, 1H), 3.39 (d, J = 5.7 Hz, 1H), 2.95 (d, J = 12.6 Hz, 1H), 2.77 (s, 1H), 2.31 (s, 4H), 2.20 (s, 6H), 2.12 (s, 1H) 1.93 (s, 1H), 1.79 (p, J = 9.8 Hz, 1H), 1.58 (s, 3H), 1.41 (d, J = 6.3 Hz, 3H). LC-MS: (ESI, m/z): 605.2 [M+H]+ [1297] Example 45 – Compound 78: (3S,4S)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-4-(dimethylamino)pyrrolidin-3-ol
Figure imgf000367_0001
[1298] Step 1: Into a 10 mL vial, trans-4-(dimethylamino)pyrrolidin-3-ol (0.13 mmol, 17.2 mg) and cesium carbonate (0.13 mmol, 43.1 mg) were placed in THF (2.0 mL). Followed by tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.088 mmol, 80.0 mg). The mixture was stirred at RT. Upon completion, the reaction was quenched with sat. ammonium chloride, extracted with iPrOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting solid was used as is for the next deprotection step. [1299] Step 2: A solution of the above residue containing tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-12-(trans-3-(dimethylamino)- 4-hydroxypyrrolidin-1-yl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate in trifluoroacetic acid (1.0 mL) was stirred at RT for 1 h. After completion, the solvent was removed under vacuum. The resulting residue was diluted with DCM and adjusted pH to 7 with sat. NaHCO3 solution. The resulting solution was extracted with DCM. The organic layer was washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by prep-HPLC with C18 column eluting with water/MeCN to afford trans-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-4-(dimethylamino)pyrrolidin-3-ol as a mixture (20.6 mg, 38% yield).1H NMR (400 MHz, DMSO) δ 6.58 (s, 1H), 5.95 (s, 2H), 5.13 (dd, J = 24.4, 13.6 Hz, 2H), 4.39 (t, J = 7.6 Hz, 1H), 4.26 (d, J = 6.2 Hz, 1H), 3.91 - 3.64 (m, 5H), 3.52 - 3.40 (m, 3H), 2.96 (d, J = 12.7 Hz, 1H), 2.71 (s, 1H), 2.31 (s, 3H), 2.24 (s, 6H), 1.93 (s, 1H), 1.60 (s, 3H), 1.41 (d, J = 6.2 Hz, 3H). LC-MS: (ESI, m/z): 621.2 [M+H]+ [1300] Example 46 – Compound 79: 5-((5S,5aS,6S,9R)-12-([1,3'-biazetidin]-1'-yl)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000368_0001
[1301] Step 1: Into a 10 mL vial, 1,3'-biazetidine hydrochloride (0.090 mmol, 17.2 mg) and cesium carbonate (0.180 mmol, 58.6 mg) were placed in THF (1.0 mL). Followed by tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.055 mmol, 50.0 mg). The mixture was stirred at RT. Upon completion, the reaction was quenched with sat. ammonium chloride, extracted with iPrOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting solid was used as is for the next deprotection step. [1302] Step 2: A solution of the above residue containing tert-butyl (5S,5aS,6S,9R)-12-([1,3'- biazetidin]-1'-yl)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate in trifluoroacetic acid (1.0 mL) was stirred at RT for 1 h. After completion, the solvent was removed under vacuum. The resulting residue was diluted with DCM and adjusted pH to 7 with sat. NaHCO3 solution. The resulting solution was extracted with DCM. The organic layer was washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by prep-HPLC with C18 column eluting with water/MeCN to afford 5-((5S,5aS,6S,9R)-12-([1,3'-biazetidin]-1'-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2- yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline (9.4 mg, 28%). 1H NMR (400 MHz, DMSO) δ 6.57 (s, 1H), 5.96 (s, 2H), 5.08 (dd, J = 12.7, 2.6 Hz, 1H), 4.37 (s, 1H), 4.05 (s, 2H), 3.87 (d, J = 9.1 Hz, 1H), 3.80 (s, 2H), 3.49 (d, J = 5.5 Hz, 1H), 3.48 – 3.38 (m, 1H), 3.38 (d, J = 5.7 Hz, 1H), 3.17 (t, J = 6.9 Hz, 4H), 2.92 (d, J = 12.6 Hz, 1H), 2.75 (s, 1H), 2.30 (s, 3H), 1.98 (p, J = 7.0 Hz, 2H), 1.90 (s, 1H), 1.57 (s, 3H), 1.40 (d, J = 6.3 Hz, 3H). LC-MS: (ESI, m/z): 603.3 [M+H]+ [1303] Example 47 – Compounds 80:
[1304] Step 1: Tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-1-fluoro-12-((1-formylcyclopropyl)methoxy)-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000369_0001
[1305] To a vial containing a solution of tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4- methoxybenzyl)amino)-2-methyl-3-(trifluoromethyl)pyridin-4-yl)-1-fluoro-12-((1- (hydroxymethyl)cyclopropyl)methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (Example 30 (Compound 61)/step 2) (0.050 mmol, 1.0 eq) in DCM (0.50 mL) were added TPAP (0.030 mmol, 0.50 eq) and NMO (0.10 mmol, 2.0 eq) under nitrogen. The vial was capped and stirred at 25 oC for 1 hr. The solution was directly used for next step (Solution A). [1306] Step 2: Tert-butyl (5S,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-1-fluoro-5-methyl-12-((1-((methyl((tetrahydro-2H-pyran-2- yl)methyl)amino)methyl)cyclopropyl)methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000369_0002
[1307] To Solution A were added amine N-methyl-1-(tetrahydro-2H-pyran-2-yl)methanamine (0.50 mmol, 10 eq), N,N-diisopropylethylamine (0.35 mmol, 7.0 eq) and NaBH(OAc)3 (0.25 mmol, 5.0 eq). Then the reaction was stirred at 30 °C for 16 h. The solvent was concentrated under nitrogen gas flow. The residue was purified by prep-TLC (PE: EA=2:1, Rf =2/ 3) to give the protected reductive amination product, which was directly used for next step. [1308] Step 3: 4-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-((1-((methyl((tetrahydro-2H-pyran-2- yl)methyl)amino)methyl)cyclopropyl)methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-6-methyl-5-(trifluoromethyl)pyridin-2-amine
Figure imgf000370_0001
[1309] To a vial containing the compound of step 2 (0.030 mmol, 1.0 eq) was added TFA (0.15 mL). The reaction mixture was stirred at 40 °C for 5 hrs. The solution was concentrated under nitrogen flow gas. The residue was purified by prep-HPLC to afford the title compound as the TFA salt. [1310] Each compound in Table 10 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Example 47. Table 10:
Figure imgf000370_0002
(trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2-(dimethylamino)ethane-1-sulfonamide
[1312] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12-(vinylsulfonamido)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate
Figure imgf000371_0001
[1313] Under nitrogen, to a solution of ethenesulfonamide (167 mg, 1.56 mmol) in N, N- dimethylformamide (5 mL) was added NaH (60% dispersion in mineral oil, 62.4 mg, 1.56 mmol) at 0 °C and stirred for 30 minutes at room temperature. Then tert-butyl (5S,5aS,6S,9R)-2-chloro-1- fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (200 mg, 0.389 mmol, intermediate 6) was added at room temperature and stirred for 1 hour at 50 °C. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-60% ethyl acetate in petroleum ether) to afford the title compound (210 mg, 99.8% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 541. [1314] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-chloro-12-((2-(dimethylamino)ethyl) sulfonamido)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate [1315] To a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- (vinylsulfonamido)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate (210 mg, 0.388 mmol) and DIPEA (151 mg, 1.16 mmol) in tetrahydrofuran (5 mL) was added dimethylamine (2M solution in tetrahydrofuran, 0.4 ml) and stirred for 2 hours at room temperature. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (220 mg, 96.8% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 586. [1316] Step 3: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-12-((2-(dimethylamino) ethyl) sulfonamido)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate
Figure imgf000372_0001
[1317] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-12-((2- (dimethylamino)ethyl)sulfonamido)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (150 mg, 0.256 mmol), (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)boronic acid (245 mg, 0.512 mmol, intermediate 4), K3PO4 (1.5M aqueous solution, 0.9 mL, 1.35 mmol) and cataCXium A Pd G3 (37.3 mg, 0.0512 mmol) in THF (4.5 mL) was stirred for 3 hours at 60 °C. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% methanol in dichloromethane) to afford the title compound (200 mg 79.5% yield) as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 983. [1318] Step 4: N-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalen-12-yl)-2-(dimethylamino) ethane-1-sulfonamide [1319] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((2-(dimethylamino)ethyl)sulfonamido)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (200 mg, 0.203 mmol) in 2,2,2-trifluoroacetaldehyde (20 mL) was stirred for 1 hours at 25 oC. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 26% B to 45% B in 9 min, 45% B; Wavelength: 254/220 nm; RT1(min): 8.9) to afford the title compound (89.3 mg, 68.4% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 643.1H NMR (300 MHz, DMSO-d6, ppm) δ 6.67 – 6.40 (m, 1H), 6.03 (s, 2H), 5.25 – 5.13 (m, 1H), 4.61 – 4.49 (m, 1H), 3.99 (d, J = 8.8 Hz, 1H), 3.73 – 3.50 (m, 6H), 3.06 (d, J = 13.1 Hz, 1H), 2.80 – 2.67 (m, 2H), 2.32 (s, 3H), 2.18 (s, 6H), 2.05 – 1.88 (m, 1H), 1.78 – 1.54 (m, 3H), 1.44 (d, J = 6.3 Hz, 3H). [1320] Example 49 – Compound 83: N-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho [1,8-ab] heptalen-12-yl) methanesulfonamide
Figure imgf000373_0001
[1321] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12-(methylsulfonamido)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene- 14-carboxylate [1322] Under nitrogen, to a solution of methanesulfonamide (74.2 mg, 0.780 mmol) in N, N- dimethylformamide (3 mL) was added NaH (60% dispersion in mineral oil, 31.2 mg, 0.780 mmol) at 0 °C and stirred for 30 minutes at room temperature. Then tert-butyl (5S,5aS,6S,9R)-2-chloro-1- fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (100 mg, 0.195 mmol, intermediate 6) was added at room temperature and stirred for 1 hour at 50 °C. The reaction was quenched with saturated NH4Cl aqueous solution. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-50% ethyl acetate in petroleum ether) to afford the title compound (100 mg, 97.2% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 529. [1323] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylsulfonamido)-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate
Figure imgf000374_0001
[1324] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-2-chloro-1-fluoro-5-methyl-12- (methylsulfonamido)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (100 mg, 0.189 mmol), (5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)boronic acid (181 mg, 0.378 mmol, intermediate 4), K3PO4 (1.5M in H2O, 0.6 mL, 0.900 mmol) and cataCXium A Pd G3 (27.5 mg, 0.0378 mmol) in tetrahydrofuran (3 mL) was stirred for 3 hours at 60 °C. The reaction mixture was diluted with water and extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by reverse phase flash chromatography on pre-packed C18 column (gradient: 0-80% CH3CN in water (0.05% NH4HCO3)) to afford the title compound (150 mg, 85.7% yield) as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 926. [1325] Step 3: N-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalen-12-yl) methanesulfonamide
Figure imgf000375_0001
[1326] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylsulfonamido)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14- carboxylate (150 mg, 0.157 mmol) in 2,2,2-trifluoroacetic acid (20 mL) was stirred for 1 hour at room temperature. The solvent was concentrated under vacuum. The residue was purified by Prep- HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 26% B to 45% B in 9 min, 45% B; Wavelength: 254/220 nm; RT1(min): 8.9) to afford the title compound (15.7 mg, 17.1% yield) as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 586. 1H NMR (300 MHz, DMSO-d6, ppm) δ 7.63 (bs, 1H), 6.77 – 6.35 (m, 1H), 6.03 (s, 2H), 5.28 – 5.14 (m, 1H), 4.63 – 4.49 (m, 1H), 4.01 (d, J = 8.7 Hz, 1H), 3.69 – 3.59 (m, 1H), 3.55 (d, J = 5.7 Hz, 1H), 3.30 (s, 3H), 3.09 (d, J = 13.0 Hz, 1H), 2.32 (s, 3H), 2.05 – 1.82 (m, 1H), 1.80 – 1.52 (m, 3H), 1.44 (d, J = 6.3 Hz, 3H). [1327] Each compound in Table 11 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Example 49. Table 11:
Figure imgf000375_0002
[1328] Example 50 – Compound 86: 5-((5S,5aS,6S,9R)-12-(Azetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen- 2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000376_0001
[1329] Step 1: tert-Butyl (5S,5aS,6S,9R)-12-(azetidin-1-yl)-2-(5-(bis(4-methoxybenzyl) amino)-4- fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate
Figure imgf000376_0002
[1330] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (101 mg, 0.110 mmol, intermediate 5), DIPEA (57.2 mg, 0.440 mmol) and azetidine (13.0 mg, 0.230 mmol) in THF (3 mL) was stirred at room temperature for 1 h. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-20% EtOAc / petroleum ether) to afford 86.1 mg (88.2% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 888. [1331] Step 2: 5-((5S,5aS,6S,9R)-12-(Azetidin-1-yl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-2-fluoro-3-methyl-4- (trifluoromethyl)aniline
Figure imgf000376_0003
[1332] A solution of tert-butyl (5S,5aS,6S,9R)-12-(azetidin-1-yl)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalene-14-carboxylate (85.7 mg, 0.100 mmol) in TFA (3 mL) was stirred at room temperature for 0.5 h. The solvent was concentrated under vacuum. The crude product was purified by Prep-HPLC with the following conditions (Column: XBridge Prep OBD C18 Column, 30 x 150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 32% B to 56% B in 9 min; Wavelength: 254nm/220nm; RT1(min): 9) to afford 39.3 mg (71.8% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 548.1H NMR (300 MHz, DMSO- d6) δ 6.58 (s, 1H), 5.97 (s, 2H), 5.09 (dd, J = 12.6, 2.5 Hz, 1H), 4.37 (t, J = 7.8 Hz, 1H), 4.10 (t, J = 7.8 Hz, 4H), 3.88 (d, J = 9.1 Hz, 1H), 3.48 (s, 3H), 2.93 (d, J = 12.6 Hz, 1H), 2.29 (m, 5H), 1.91 (s, 1H), 1.59 (m, 3H), 1.41 (d, J = 6.2 Hz, 3H). [1333] Each compound in Table 12 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Example 50. Table 12:
Figure imgf000377_0001
Figure imgf000378_0003
[1334] Example 51 – Compound 95: 4-((5R,5aS,6S,9R)-12-(3-(Dimethylamino)-3- methylazetidin-1-yl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab] heptalen-2-yl)-6-methyl-5-(trifluoromethyl) pyridin-2-amine
Figure imgf000378_0001
[1335] Step 1: tert-Butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3- (trifluoromethyl) pyridin-4-yl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate
Figure imgf000378_0002
[1336] A solution of tert-butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-1-fluoro-12-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (79.8 mg, 0.0800 mmol, intermediate 17), N,N,3-trimethylazetidin-3-amine hydrochloride (25.3 mg, 0.170 mmol) and DIPEA (54.5 mg, 0.420 mmol) in THF (2 mL) was stirred at room temperature for 1 h. The resulting solution was partitioned between water and EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-10% MeOH / DCM) to afford 71.1 mg (90.5% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 982. [1337] Step 2: 4-((5R,5aS,6S,9R)-12-(3-(Dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalen-2-yl)-6-methyl-5-(trifluoromethyl) pyridin-2-amine
Figure imgf000379_0001
[1338] A solution of tert-butyl (5R,5aS,6S,9R)-2-(6-(bis(4-methoxybenzyl) amino)-2-methyl-3- (trifluoromethyl) pyridin-4-yl)-12-(3-(dimethylamino)-3-methylazetidin-1-yl)-1-fluoro-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab] heptalene-14-carboxylate (68.1 mg, 0.0700 mmol) in TFA (3.5 mL) was stirred at 50 °C for 4 h. Then the solution was concentrated under vacuum. The crude product was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min mL/min; Gradient: 31% B to 53% B in 10 min; Wavelength: 254nm/220nm; RT1(min): 8) to afford 19.1 mg (42.9% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 642.1H NMR (400 MHz, DMSO-d6, ppm): δ 6.83 (s, 2H), 6.19 (s, 1H), 5.60 – 5.43 (m, 1H), 5.22 – 5.07 (m, 1H), 4.32 (d, J = 10.0 Hz, 1H), 3.99 – 3.83 (m, 2H), 3.82 – 3.66 (m, 2H), 3.58 – 3.46 (m, 2H), 3.04 (d, J = 12.7 Hz, 1H), 2.48 – 2.42 (m, 3H), 2.12 (s, 6H), 1.96 (bs, 1H), 1.81 (bs, 1H), 1.73 – 1.50 (m, 2H), 1.25 (s, 3H). [1339] Example 52 – Compound 96: 5-((5S,5aS,6S,9R)-12-((S)-2- ((dimethylamino)methyl)azetidin-1-yl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4- (trifluoromethyl)aniline
[1340] Step 1: Tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((S)-2-((dimethylamino)methyl)azetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000380_0001
[1341] Into a 10 mL vial, (S)-1-(azetidin-2-yl)-N,N-dimethylmethanamine hydrochloride (0.080 mmol, 12.3 mg) and cesium carbonate (0.15 mmol, 48.9 mg) were placed in THF (1.0 mL). Followed by tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.055 mmol, 50.0 mg). The mixture was stirred at RT. Upon completion, the reaction was quenched with sat. ammonium chloride, extracted with iPrOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting solid was used as is for the next deprotection step. [1342] Step 2: 5-((5S,5aS,6S,9R)-12-((S)-2-((dimethylamino)methyl)azetidin-1-yl)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline [1343] A solution of the above residue tert-butyl (4R,7S,8S,9S)-13-[5-[bis[(4- methoxyphenyl)methyl]amino]-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl]-17-[(2S)-2- [(dimethylamino)methyl]azetidin-1-yl]-14-fluoro-9-methyl-10-oxa-2,12,16,18,20- pentazapentacyclo[9.7.1.14,7.02,8.015,19]icosa-1(18),11(19),12,14,16-pentaene-20-carboxylate in trifluoroacetic acid (1.0 mL) was stirred at RT for 1 h. After completion, the solvent was removed under vacuum. The resulting residue was diluted with DCM and adjusted pH to 7 with sat. NaHCO3 solution. The resulting solution was extracted with DCM. The organic layer was washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by prep-HPLC with C18 column eluting with water/MeCN to afford the titled compound (2.6 mg, 7.5% yield). [1344] 1H NMR (400 MHz, DMSO) δ 6.66 – 6.32 (m, 1H), 5.96 (bs, 2H), 5.20 – 5.00 (m, 1H), 4.54 – 4.54 (m, 1H), 4.44 – 4.32 (m, 1H), 4.05 – 3.91 (m, 2H), 3.88 (d, J = 9.1 Hz, 1H), 3.52 – 3.44 (m, 1H), 2.95 (d, J = 12.5 Hz, 2H), 2.63 – 2.57 (m, 1H), 2.43 – 2.35 (m, 1H), 2.30 (bs, 4H), 2.22 (bs, 6H), 2.16 – 2.07 (m, 1H), 1.96 – 1.84 (m, 1H), 1.67 – 1.48 (m, 4H), 1.41 (d, J = 6.2 Hz, 3H). LC- MS: (ESI, m/z): 605.3 [M+H]+ [1345] Example 53 – Compound 97 (Isomer 1 & 2): ((R)-1-((5S,5aS,6S,9R)-2-(5-amino-4- fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)azetidin-2-yl)methanol and ((S)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-12-yl)azetidin-2-yl)methanol
[1346] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(2-(hydroxymethyl)azetidin-1-yl)-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000382_0001
[1347] Into a 10 mL vial, 2-azetidinylmethanol hydrochloride (0.090 mmol, 11.5 mg) and cesium carbonate (0.15 mmol, 48.9 mg) were placed in THF (1.0 mL). Followed by tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.055 mmol, 50.0 mg). The mixture was stirred at RT. Upon completion, the reaction was quenched with sat. ammonium chloride, extracted with iPrOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting solid was used as is for the next deprotection step. [1348] Step 2: ((R)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)azetidin-2-yl)methanol and ((S)-1-((5S,5aS,6S,9R)-2-(5- amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)azetidin-2- yl)methanol [1349] A solution of the above residue tert-butyl rac-(4R,7S,8S,9S)-13-[5-[bis[(4- methoxyphenyl)methyl]amino]-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl]-14-fluoro-17-[2- (hydroxymethyl)azetidin-1-yl]-9-methyl-10-oxa-2,12,16,18,20- pentazapentacyclo[9.7.1.14,7.02,8.015,19]icosa-1(18),11(19),12,14,16-pentaene-20-carboxylate in trifluoroacetic acid (1.0 mL) was stirred at RT for 1 h. After completion, the solvent was removed under vacuum. The resulting residue was diluted with DCM and adjusted pH to 7 with sat. NaHCO3 solution. The resulting solution was extracted with DCM. The organic layer was washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by prep-HPLC with C18 column eluting with water/MeCN to afford [1-[rac-(4R,7S,8S,9S)-13-[5- amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl]-14-fluoro-9-methyl-10-oxa-2,12,16,18,20- pentazapentacyclo[9.7.1.14,7.02,8.015,19]icosa-1(18),11(19),12,14,16-pentaen-17-yl]azetidin-2- yl]methanol. The racemic mixture was purified under chiral SFC with the following parameters: Acquisition method 1_isocratic 40% MeOH; column name: (50 x 4.6mm, 3um) chiralpak IK mobile phase a: carbon dioxide; mobile phase b: methanol w/ 0.1% NH4OH. [1350] 97 (Isomer 1): 1H NMR (400 MHz, DMSO) δ 6.65 – 6.31 (m, 1H), 5.96 (s, 2H), 5.55 (s, 1H), 5.18 – 4.77 (m, 1H), 4.60 – 4.45 (m, 1H), 4.45 – 4.28 (m, 1H), 4.07 – 3.77 (m, 3H), 3.75 – 3.61 (m, 2H), 3.53 – 3.44 (m, 1H), 3.42 – 3.35 (m, 1H), 2.94 (d, J = 12.6 Hz, 1H), 2.84 – 2.39 (m, 1H), 2.13 (bs, 4H), 2.19 – 2.01 (m, 1H), 1.97 – 1.78 (m, 1H), 1.66 – 1.47 (m, 3H), 1.41 (d, J = 6.3 Hz, 3H). LC-MS: (ESI, m/z): 578.2 [M+H]+ [1351] 97 (Isomer 2): 1H NMR (400 MHz, DMSO) δ 6.66 – 6.35 (m, 1H), 5.96 (s, 2H), 5.61 (s, 1H), 5.09 (d, J = 12.6 Hz, 1H), 4.47 (s, 1H), 4.53 – 4.42 (m, 1H), 4.41 – 4.30 (m, 1H), 4.02 – 3.81 (m, 3H), 3.76 – 3.65 (m, 1H), 3.52 – 3.44 (m, 1H), 3.41 – 3.36 (m, 1H), 2.94 (d, J = 12.6 Hz, 1H), 2.82 – 2.61 (m, 1H), 2.35 – 2.20 (m, 4H), 2.19 – 2.05 (m, 1H), 2.98 – 1.75 (m, 1H), 1.68 – 1.46 (m, 3H), ), 1.41 (d, J = 6.3 Hz, 3H). LC-MS: (ESI, m/z): 578.2 [M+H]+ [1352] Example 54 – Compound 98: 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12- ((tetrahydro-2H-pyran-4-yl)methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline (TFA Salt)
[1353] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((tetrahydro-2H-pyran-4-yl)methoxy)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000384_0001
[1354] Under nitrogen, to a solution of (tetrahydro-2H-pyran-4-yl)methanol (0.24 mmol, 4.0 equiv.) in THF (1.5 mL) was added NaH (0.48 mmol, 8.0 eq, 60% dispersion in mineral oil) at 0 °C. The mixture was stirred at 25 oC for 0.5 hr. Then tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12- (methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.060 mmol, 1.0 equiv.) was added and the reaction mixture was stirred at 25 oC for 2.5 hrs. Spot checked by LCMS, and LCMS showed most reactions went smoothly. The reaction was quenched with H2O (0.2 mL). The reaction mixture was concentrated under nitrogen gas flow. Added 1.0 mL of H2O to the residue and extracted with EtOAc (2.0 mL x 2). Collected organic layer and removed the solvent under vacuum. The crude product was used for the next step directly. [1355] Step 2: 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-((tetrahydro-2H-pyran-4- yl)methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline (TFA salt) [1356] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((tetrahydro-2H-pyran-4-yl)methoxy)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (0.050 mmol, 1.0 equiv.) in TFA (0.5 mL). The reaction mixture was stirred at 50 °C for 1 hr. Spot checked by LCMS, and LCMS showed most reactions went smoothly. The solvent was concentrated under vacuum. The residue was purified by prep. HPLC to give the final product 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-((tetrahydro-2H-pyran-4- yl)methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline as the TFA salt. 1H NMR (DMSO-d6, 400 MHz) δ 9.1-9.7 (m, 1H), 6.4-6.7 (m, 1H), 5.9-6.2 (m, 1H), 5.2-5.3 (m, 1H), 4.7-4.8 (m, 1H), 4.2-4.3 (m, 4H), 4.13 (br d, 1H, J=6.1 Hz), 3.88 (br dd, 2H, J=2.9, 11.2 Hz), 3.3-3.4 (m, 4H), 2.32 (br s, 3H), 1.9-2.1 (m, 4H), 1.8-1.9 (m, 1H), 1.6-1.7 (m, 2H), 1.47 (d, 3H, J=6.4 Hz), 1.3-1.4 (m, 2H). LC- MS: (ESI, m/z): 607.2 [M+H]+ [1357] Each compound in the Table 13 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Example 54. Compounds isolated as TFA salts are denoted with *. Table 13:
Figure imgf000385_0001
Figure imgf000386_0001
[1358] Example 55 – Compound 145: 2-(1-((((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)cyclopropyl)acetonitrile
Figure imgf000387_0001
[1359] Step 1: Tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((1-(cyanomethyl)cyclopropyl)methoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000387_0002
[1360] Under nitrogen, to a solution of 2-(1-(hydroxymethyl)cyclopropyl)acetonitrile (0.24 mmol, 4.0 equiv.) in THF (1.0 mL) was added LiHMDS (0.70 mmol, 1.2 equiv., 1 M in THF) at 0 °C and stirred for 1 hr under this temperature. Then tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12- (methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.60 mmol, 1.0 equiv.) was added and the reaction mixture was stirred at 25 oC for 16 hrs. Spot checked by LCMS, and LCMS showed most reactions went smoothly. The reaction mixture was concentrated under nitrogen gas flow. Added 1.0 mL of H2O to the residue and extracted with EtOAc (2.0 mL x 2). Collected organic layer and removed the solvent by vacuum. The crude product was used for the next step directly. [1361] Step 2: 2-(1-((((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)cyclopropyl)acetonitrile
Figure imgf000388_0001
[1362] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((1-(cyanomethyl)cyclopropyl)methoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (0.050 mmol, 1.0 equiv.) in TFA (0.5 mL). The reaction mixture was stirred at 50 °C for 1 hr. Spot checked by LCMS, and LCMS showed most reactions went smoothly. The solvent was concentrated under vacuum. The residue was purified by prep. HPLC to give the final product 2-(1-((((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)cyclopropyl)acetonitrile. 1H NMR (DMSO-d6, 400 MHz) δ 6.4-6.6 (m, 1H), 6.03 (br s, 2H), 5.11 (dd, 1H, J=2.1, 12.9 Hz), 4.5-s4.6 (m, 1H), 4.2-4.3 (m, 2H), 3.98 (br d, 1H, J=8.3 Hz), 3.62 (br d, 1H, J=1.2 Hz), 3.51 (br d, 2H, J=5.7 Hz), 3.05 (br d, 1H, J=13.4 Hz), 2.77 (s, 2H), 2.31 (br s, 3H), 1.5-1.9 (m, 4H), 1.44 (d, 3H, J=6.2 Hz), 0.765 (m, 2H), 0.675 (m, 2H). LC-MS: (ESI, m/z): 602.1 [M+H]+ [1363] Each compound in the Table 14 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Example 55. Table 14:
Figure imgf000388_0002
Figure imgf000389_0001
[1364] Example 56 – Compound 173: 3-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)propanenitrile
[1365] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-(2-cyanoethoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000390_0001
[1366] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12- (methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.060 mmol, 1.0 equiv.) and 3- hydroxypropanenitrile (0.24 mmol, 4.0 equiv.) in DMSO (1.0 mL) was added DIPEA (0.18 mmol, 3.0 equiv.) and 4 Å MS. Then, the reaction mixture was stirred at 80 °C for 16 hrs. Spot checked by LCMS, and LCMS showed it worked well. The reaction mixture was concentrated under nitrogen gas flow. Added 1 mL of H2O to the reaction mixture and extracted with EtOAc (2.0 mL x 2). Collected organic layer and removed the solvent by vacuum. The crude product was used for the next step directly. [1367] Step 2: 3-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)propanenitrile [1368] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-(2-cyanoethoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.050 mmol, 1.0 equiv.) in TFA (0.5 mL). The reaction mixture was stirred at 50 °C for 1 hr. Spot checked by LCMS, and LCMS showed most reactions went smoothly. The solvent was concentrated under vacuum. The residue was purified by prep. HPLC to give the final product 3- (((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen- 12-yl)oxy)propanenitrile. LC-MS: (ESI, m/z): 562.2 [M+H]+ [1369] Example 57 – Compound 174: 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-isopropoxy-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline (TFA Salt)
Figure imgf000391_0001
[1370] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-isopropoxy-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000391_0002
[1371] To a solution of intermediate 19 (0.150 mmol, 1.00 eq) in 1.5 mL of mixed solvent of THF: DMF (VTHF: VDMF = 1: 1) was added NaH (0.450 mmol, 3.00 eq) at 0 °C. The mixture was stirred at 25 oC for 16 hrs. Then 2-bromopropane (0.450 mmol, 3.00 eq) was added and stirred at 80 °C for 16 hrs. Spot checked by LCMS, and LCMS showed some reactions went smoothly. The mixture was concentrated under vacuum to give a residue of the title compound, which was used for the next step. [1372] Step 2: 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-isopropoxy-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl- 4-(trifluoromethyl)aniline (TFA Salt)
Figure imgf000392_0001
[1373] Dissolved tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-1-fluoro-12-isopropoxy-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (crude, ~ 0.100 mmol, 1.00 eq) with 1.0 mL of TFA. The mixture was stirred at 50 °C for 2 hrs. The solvent was concentrated under vacuum. The residue was purified by prep-HPLC to give the title compound. 1H NMR (DMSO-d6, 400 MHz) δ 9.0-9.6 (m, 2H), 6.4-6.7 (m, 1H), 5.8-6.2 (m, 1H), 5.2-5.4 (m, 2H), 4.7-4.8 (m, 1H), 4.2-4.3 (m, 2H), 4.1-4.2 (m, 1H), 3.34 (br s, 2H), 2.3-2.4 (m, 3H), 1.8-2.1 (m, 4H), 1.47 (d, 3H, J=6.4 Hz), 1.34 (d, 6H, J=6.1 Hz). [1374] Each compound in the Table 15 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described in Example 57. Compounds isolated as TFA salts are denoted with *. Table 15:
Figure imgf000392_0002
Figure imgf000393_0002
[1375] Example 58 – Compound 183: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-((4- fluorotetrahydrofuran-3-yl)methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline (C2 is mixture of trans stereoisomers)
Figure imgf000393_0001
[1376] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((4-hydroxytetrahydrofuran-3-yl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (C2 is mixture of cis stereoisomers) [1377] Under nitrogen, to a solution of 4-(hydroxymethyl)tetrahydrofuran-3-ol (48.6 mg, 0.411 mmol, intermediate 44) and tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro- 3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (250 mg, 0.274 mmol, intermediate 5) in toluene (8 mL) was added t-BuONa (53.8 mg, 0.549 mmol) at 0 oC. The resulting solution was stirred for 1 h at room temperature. The resulting solution was partitioned between water and EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-11% MeOH / DCM) to afford 186 mg (57.1% yield) of the title compound as a yellow solid. LCMS: (ESI, m/z): [M+H]+ = 949. [1378] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((4-fluorotetrahydrofuran-3-yl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (C2 is mixture of trans stereoisomers)
Figure imgf000394_0001
[1379] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((4-hydroxytetrahydrofuran-3- yl)methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (144 mg, 0.151 mmol) in DCM (8.5 mL) was added DAST (116 mg, 0.722 mmol) at -30oC. The mixture was stirred 2 hours at -30oC. The reaction was quenched by NaHCO3 aqueous and extracted with DCM. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-13% MeOH / DCM) to afford 20.1 mg (13.9% yield) of the title compound as a white solid. LCMS: (ESI, m/z): [M+H]+ = 951. [1380] Step 3: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-((4-fluorotetrahydrofuran-3-yl)methoxy)- 5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline (C2 is mixture of trans)
Figure imgf000395_0001
[1381] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((4-fluorotetrahydrofuran-3-yl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (20.1 mg, 0.0211 mmol) in TFA (2.5 mL) was stirred at room temperature for 0.5 hours. The solvent was concentrated under vacuum. The crude product was purified by Prep-HPLC with the following conditions: (Column: XBridge Prep OBD C18 Column, 30 x 150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 29% B to 49% B in 10.5 min; Wave Length: 254/220 nm; RT1(min): 9.53) to afford 3.1 mg (23.9% yield) of the title compound as a white solid. LCMS: (ESI, m/z): [M+H]+ = 611. 1H NMR (300 MHz, DMSO-d6) δ 6.70 – 7.35 (m, 1H), 6.02 (s, 2H), 5.44 – 4.96 (m, 2H), 4.58 (t, J = 7.5 Hz, 1H), 4.44 – 4.21 (m, 2H), 4.16 – 3.45 (m, 7H), 3.10 (d, J = 13.1 Hz, 1H), 2.94 – 2.57 (m, 1H), 2.31 (s, 3H), 1.97 – 1.34 (m, 7H). [1382] Example 59 – Compound 184: 4-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)tetrahydrofuran-3-ol (C2 is mixture of cis stereoisomers)
Figure imgf000395_0002
[1383] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((4-hydroxytetrahydrofuran-3-yl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (31.1 mg, 0.0328 mmol, Example 58, Compound 183 step 1) in TFA (2.5 mL) was stirred at room temperature for 0.5 hours. The solvent was concentrated under vacuum. The crude product was purified by Prep-HPLC with the following conditions: (Column: XBridge Prep Shield RP OBD C18 Column, 30 x 150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 22% B to 44% B in 10 min; Wavelength: 254/220 nm; RT1(min): 9.2) to afford 5.1 mg (25.6% yield) of the title compound as a white solid. LCMS: (ESI, m/z): [M+H]+ = 609. 1H NMR (500 MHz, Methanol-d4) δ 6.73 – 6.47 (m, 1H), 5.37 (d, J = 13.5 Hz, 1H), 4.75 (t, J = 9.2 Hz, 1H), 4.60 – 4.41 (m, 3H), 4.07 (t, J = 8.1 Hz, 2H), 3.97 – 3.89 (m, 1H), 3.85 – 3.79 (m, 1H), 3.76 – 3.71 (m, 1H), 3.69 (d, J = 6.0 Hz, 1H), 3.60 (s, 1H), 3.17 (d, J = 13.5 Hz, 1H), 2.75 (s, 1H), 2.40 (s, 3H), 2.12 – 2.02 (m, 1H), 1.86 (s, 1H), 1.79 (d, J = 7.0 Hz, 2H), 1.58 (d, J = 6.4 Hz, 3H). [1384] Example 60 – Compound 185 (mixture of isomers): (3-((((5S,5aS,6S,9R)-2-(5-Amino-4- fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)tetrahydrofuran-3- yl)methanol
Figure imgf000396_0001
[1385] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((3-(hydroxymethyl)tetrahydrofuran-3-yl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1386] Under nitrogen, to a solution of (tetrahydrofuran-3,3-diyl)dimethanol (100 mg, 0.758 mmol, intermediate 42) in THF (8 mL) was added NaH (45.9 mg, 1.14 mmol, 60% in mineral oil) at 0℃. The resulting solution was stirred for 10 min at 0℃. Then tert-butyl (5S,5aS,6S,9R)-2-(5- (bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12- (methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (300 mg, 0.330 mmol, intermediate 5) was added at 0℃ and stirred at room temperature for 1 hour. The reaction was quenched with NH4Cl and extracted with EtOAc. The organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-7% MeOH / DCM) to afford 280 mg (88.3% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 963. [1387] Step 2: (3-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)tetrahydrofuran-3-yl)methanol
Figure imgf000397_0001
[1388] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((3-(hydroxymethyl)tetrahydrofuran-3-yl)methoxy)- 5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (20.0 mg, 0.0208 mmol) in TFA (2 mL) was stirred at 0℃ for 2 hours. The solvent was concentrated under vacuum. The crude product was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 19*250 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 25 mL/min; Gradient: 23% B to 45% B in 10 min; Wave Length: 254nm/220nm; RT1(min): 9.3) to afford 4.7 mg (25.1% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 623. 1H NMR (300 MHz, DMSO-d6) δ 6.70 – 7.35 (m, 1H), 6.02 (s, 2H), 5.10 (d, J = 12.7 Hz, 1H), 4.95 – 4.86 (m, 1H), 4.60 – 4.44 (m, 1H), 4.32 (s, 2H), 3.94 (s, 1H), 3.83 – 3.68 (m, 2H), 3.57 (d, J = 2.8 Hz, 3H), 3.50 – 3.40 (m, 3H), 3.03 (d, J = 12.8 Hz, 1H), 2.32 (s, 3H), 1.83 – 1.71 (m, 3H), 1.69 – 1.53 (m, 3H), 1.44 (d, J = 6.3 Hz, 3H). [1389] Example 61 – Compound 185 (Isomer 1): (3-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)tetrahydrofuran-3- yl)methanol
Figure imgf000398_0001
[1390] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((3-(hydroxymethyl)tetrahydrofuran-3-yl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000398_0002
[1391] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((3-(hydroxymethyl)tetrahydrofuran-3-yl)methoxy)- 5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (200 mg, 0.208 mmol, Example 60, Compound 185 (mixture of isomers), step 1) in DCM (4 mL) was added DDQ (94.0 mg, 0.414 mmol) at room temperature. The solution was stirred at room temperature overnight. The reaction was quenched with aqueous Na2S2O3 solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-70% EtOAc / petroleum ether) to afford 100 mg mixture of title compound as a yellow solid. The mixture of two diastereomers were separated by Chiral- Prep-HPLC: (Column: CHIRALPAK IK 2*25 cm, 5 μm; Mobile Phase A: HEX (0.1% FA), Mobile Phase B: EtOH: DCM=1: 1; Flow rate: 20 mL/min; Gradient (B%): isocratic 20; Wave Length: 220/254 nm; RT1(min): 26.237; RT2(min): 31.119; Sample Solvent: EtOH) to yield 30 mg of the faster peak and 30 mg of the slower peak as yellow solids. LC-MS: (ESI, m/z): [M+H]+ = 723. [1392] Step 2: (3-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)tetrahydrofuran-3-yl)methanol
Figure imgf000399_0001
[1393] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-12-((3-(hydroxymethyl)tetrahydrofuran-3-yl)methoxy)-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (30.0 mg, 0.0416 mmol, the faster peak of step 1), 2,6-di-tert-butylpyridine (15.9 mg, 0.0832 mmol) and TMSOTf (27.7 mg, 0.124 mmol) in DCM (1 mL) was stirred for 2 hours at 0 ℃. The solvent was concentrated under vacuum. The crude product was purified by Prep-HPLC with the following conditions: (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5 μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 24% B to 44% B in 10.5 min; Wavelength: 254/220 nm; RT1(min): 9.07) to afford 2.6 mg (10.1% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 623. 1H NMR (500 MHz, DMSO-d6, ppm): δ 6.54 (d, J = 36.5 Hz, 1H), 6.02 (s, 2H), 5.10 (d, J = 12.7 Hz, 1H), 4.95 – 4.86 (m, 1H), 4.60 – 4.44 (m, 1H), 4.32 (s, 2H), 3.94 (s, 1H), 3.83 – 3.68 (m, 2H), 3.57 (d, J = 2.8 Hz, 3H), 3.50 – 3.40 (m, 3H), 3.03 (d, J = 12.8 Hz, 1H), 2.84-2.69 (s, 1H), 2.32 (s, 3H), 1.84 – 1.78 (m, 1H),1.79-1.74 (m, 2H), 1.68-1.60 (m, 2H),1.58 – 1.51 (m, 1H), 1.44 (d, J = 6.3 Hz, 3H). [1394] Example 62 – Compound 186 (Isomer 1 & 2): 2-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro- 3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)tetrahydro-2H- thiopyran 1,1-dioxide (two single diastereomers)
[1395] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((tetrahydro-2H-thiopyran-2-yl)methoxy)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000400_0001
[1396] Under nitrogen, to a solution of (tetrahydro-2H-thiopyran-2-yl)methanol (58.1 mg, 0.440 mmol) in tetrahydrofuran (10 mL) was added NaH (35.1 mg, 0.880 mmol, 60% in mineral oil) at 0 ℃. The solution was stirred at room temperature for 1 hour. To the resulting solution was added tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (200 mg, 0.220 mmol, intermediate 5) at 0 ℃. The solution was stirred at room temperature for 1 hour. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-30% EtOAc/ petroleum ether) to afford 167 mg (79.0% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 963. [1397] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((1,1-dioxidotetrahydro-2H-thiopyran-2-yl)methoxy)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate
Figure imgf000401_0001
[1398] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((tetrahydro-2H-thiopyran-2-yl) methoxy) - 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (154 mg, 0.160 mmol), Na2WO4 (47.3 mg, 0.160 mmol) and PhPO3H2 (25.9 mg, 0.160 mmol) in acetonitrile (4 mL) and water (0.8 mL) was added H2O2 (0.3 mL, 30%) at 0℃. The solution was stirred at room temperature for 6 hours. The reaction was quenched with aqueous aq. Na2S2O3 and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-20% EtOAc/ petroleum ether) to afford 106 mg (66.6% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 995. [1399] Step 3: 2-((((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)methyl)tetrahydro-2H-thiopyran 1,1-dioxide (two isomers)
Figure imgf000401_0002
[1400] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((1,1-dioxidotetrahydro-2H-thiopyran-2-yl)methoxy)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (100 mg, 0.101 mmol) in TFA (6 mL) was stirred at room temperature for 1 hour. The solvent was concentrated under vacuum. The residue was purified by C18 column (solvent gradient: 0-60% CH3CN in water (0.05% NH4HCO3)) to yield 50 mg of mixture of diastereomers as a white solid. The mixture were separated by prep-chiral-HPLC ( Column: CHIRAL ART Cellulose-SB, 2*25 cm, 5 μm; Mobile Phase A: MtBE(0.5% 2M NH3- MeOH)--HPLC, Mobile Phase B: EtOH--HPLC; Flow rate: 20 mL/min; Gradient: isocratic 50; Wavelength: 220/254 nm; RT1(min): 7.582; RT2(min): 12.454; Sample Solvent: EtOH--HPLC; Injection Volume: 2.0 mL; Number Of Runs: 3) to afford 19.1 mg (29.0% yield) of Compound 186 (Isomer 1) (the faster peak) and 18.3 mg (27.8% yield) of Compound 186 (Isomer 2) (the slower peak) as a white solids. [1401] Compound 186 (Isomer 1): LC-MS: (ESI, m/z): [M+H]+ = 655. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.68 – 6.45 (m, 1H), 6.03 (br s, 2H), 5.11 – 5.09 (m, 1H), 4.83 – 4.78 (m, 1H), 4.55 – 4.52 (m, 1H), 4.48 – 4.42 (m, 1H), 3.99 – 3.93 (m 1H), 3.66 – 3.63 (m, 1H), 3.57 – 3.55 (m, 1H), 3.49 – 3.47 (m, 1H), 3.19 – 3.13 (m, 2H), 3.10 – 3.04 (m, 1H), 2.32 (s, 3H), 2.19 – 2.16 (m, 1H), 2.05 – 1.99 (m, 1H), 1.90 – 1.73 (m, 4H), 1.70 – 1.53 (m, 4H), 1.47 – 1.45 (m, 3H). [1402] Compound 186 (Isomer 2): LC-MS: (ESI, m/z): [M+H]+ = 655. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.65 – 6.44 (m, 1H), 6.03 (br s, 2H), 5.11 – 5.09 (m, 1H), 4.85 – 4.79 (m, 1H), 4.55 – 4.52 (m, 1H), 4.47 – 4.40 (m, 1H), 4.00 – 3.97 (m 1H), 3.68 – 3.63 (m, 1H), 3.58 – 3.56 (m, 1H), 3.48 – 3.46 (m, 1H), 3.20 – 3.12 (m, 2H), 3.07 – 3.04 (m, 1H), 2.32 (s, 3H), 2.19 – 2.16 (m, 1H), 2.04 – 1.99 (m, 1H), 1.86 – 1.76 (m, 4H), 1.69 – 1.62 (m, 2H), 1.59 – 1.54 (m, 2H), 1.47 – 1.45 (m, 3H). [1403] Example 63 – Compound 187 (Isomer 1 & 2): 5-((5S,5aS,6S,9R)-12-((3-(Difluoromethyl) tetrahydrofuran-3-yl)methoxy)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4- (trifluoromethyl)aniline
[1404] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((3-(difluoromethyl)tetrahydrofuran-3-yl)methoxy)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000403_0001
[1405] Under nitrogen, to a solution of (3-(difluoromethyl)tetrahydrofuran-3-yl)methanol (50.1 mg, 0.330 mmol) in THF (3 mL) was added NaH (19.8 mg, 0.495 mmol, 60% in mineral oil) at 0°C and stirred at room temperature for 30 minutes. Then tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12- (methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (150 mg, 0.165 mmol, intermediate 5) was added and the solution was stirred at room temperature for 2 hours. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-10% MeOH / DCM) to afford 130 mg (80.3% yield) of the title compound as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 983. [1406] Step 2: 5-((5S,5aS,6S,9R)-12-((3-(Difluoromethyl)tetrahydrofuran-3-yl)methoxy)-1-fluoro- 5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000404_0001
[1407] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((3-(difluoromethyl)tetrahydrofuran-3-yl)methoxy)-1-fluoro- 5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (130 mg, 0.132 mmol) in TFA (5 mL) was stirred at room temperature for 2 hours. The solvent was concentrated under vacuum. The residue was purified by C18 column (solvent gradient: 0-90% MeOH in water (0.05% NH4HCO3)) to afford 64.0 mg (75.3% yield) the mixture of diastereomers as a white solid. The mixture was separated by Chiral-Prep-HPLC (Column: CHIRALPAKIF-34.6*50mm, 3um; Mobile Phase A: Hex(0.1% DEA): EtOH = 70:30; Flow rate: 1.0 mL/min; Gradient: isocratic) to afford 11.3 mg of the faster peak and 12.9 mg of the slower peak as white solids. LC-MS: (ESI, m/z): [M+H]+ = 643. [1408] Compound 187 (Isomer 1; the faster peak): 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.68 – 6.43 (m, 1H), 6.29 (t, J = 33.6 Hz, 1H), 6.05 (s, 2H), 5.17 – 5.05 (m, 1H), 4.60 – 4.51 (m, 1H), 4.50 – 4.36 (m, 2H), 4.02 – 3.91 (m, 1H), 3.90 – 3.69 (m, 4H), 3.61 – 3.54 (m, 1H), 3.45 (d, J = 6.4 Hz, 1H), 3.04 (d, J = 12.8 Hz, 1H), 2.32 (s, 3H), 2.12 – 2.02 (m, 1H), 1.96 – 1.86 (m, 1H), 1.85 – 1.75 (m, 1H), 1.73 – 1.60 (m, 2H), 1.60 – 1.50 (m, 1H), 1.44 (d, J = 6.4 Hz, 3H). [1409] Compound 187 (Isomer 2; the slower peak): 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.67 – 6.42 (m, 1H), 6.29 (t, J = 33.6 Hz, 1H), 6.04 (s, 2H), 5.14 – 5.05 (m, 1H), 4.63 – 4.50 (m, 1H), 4.49 – 4.34 (m, 2H), 4.03 – 3.91 (m, 1H), 3.90 – 3.70 (m, 4H), 3.63 – 3.54 (m, 1H), 3.45 (d, J = 6.3 Hz, 1H), 3.04 (d, J = 12.8 Hz, 1H), 2.91 (s, 1H), 2.32 (s, 3H), 2.13 – 2.02 (m, 1H), 1.97 – 1.87 (m, 1H), 1.85 – 1.75 (m, 1H), 1.73 – 1.60 (m, 2H), 1.60 – 1.50 (m, 1H), 1.44 (d, J = 6.3 Hz, 3H). [1410] Each compound in Table 16 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described for Examples 63, Compound 187 (Isomers 1 and 2). Table 16.
Figure imgf000405_0001
[1411] Example 64 – Compound 194 & 195: 2-(1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2-(hydroxymethyl)azetidin-2- yl)acetic acid & 1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-6-oxa-1-azaspiro[3.4]octan-7-one
Figure imgf000406_0001
[1412] Step 1: 2-(1-((5S,5aS,6S,9R)-2-(5-(bis(4-Methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2- (methoxycarbonyl)azetidin-2-yl)acetic acid
Figure imgf000406_0002
[1413] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (100 mg, 0.110 mmol, intermediate 5), 2-(2-(methoxycarbonyl)azetidin-2-yl)acetic acid (190 mg, 1.10 mmol, intermediate 46), CsF (20.0 mg, 0.131 mmol) and DIPEA (142 mg, 1.12 mmol) in THF (5mL) was stirred at 60 oC for 12 hours. The resulting solution was partitioned between water and EtOAc. The separated organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-15% MeOH / DCM) to afford 50.0 mg (45.4% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H] + = 1004. [1414] Step 2: 2-(1-((5S,5aS,6S,9R)-2-(5-(bis(4-Methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H- 4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2- (hydroxymethyl)azetidin-2-yl)acetic acid
Figure imgf000407_0001
[1415] A solution of 2-(1-((5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2- (methoxycarbonyl)azetidin-2-yl)acetic acid (50.0 mg, 0.0499 mmol) and LiBH4 (2.19 mg, 0.101 mmol) in THF (1 ml) was stirred at room temperature for 2 hours. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-10% MeOH / DCM) to afford 42.0 mg (86.4% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H] + = 976. [1416] Step 3:2-(1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-2-(hydroxymethyl)azetidin-2-yl)acetic acid & 1- ((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen- 12-yl)-6-oxa-1-azaspiro[3.4]octan-7-one
Figure imgf000407_0002
[1417] A solution of 2-(1-((5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2- (hydroxymethyl)azetidin-2-yl)acetic acid (40.1 mg, 0.0411 mmol) in TFA (5 mL) was stirred at room temperature for 2 hours. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: Xselect CSH OBD Column, 30*150mm, 5um; Mobile Phase A: water (0.1% FA), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 10% B to 27% B in 10 min; Wave Length: 254/220 nm; RT1(min): 9.92) to afford 11.2 mg Compound 194 (41.2% yield) and 2.00 mg Compound 195 (7.2% yield) as white solids. [1418] Compound 194: LC-MS: (ESI, m/z): [M+H] + = 636. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.65 – 6.34 (m, 1H), 5.96 (s, 2H), 5.16 – 4.88 (m, 1H), 4.46 – 4.28 (m, 1H), 4.03 – 3.78 (m, 4H), 3.76 – 3.48 (m, 2H), 3.46 – 3.38 (m, 2H), 3.04 – 2.70 (m, 3H), 2.42 – 2.17 (m, 5H), 1.87 (s, 1H), 1.73 – 1.48 (m, 3H), 1.40 (dd, J = 6.4, 3.0 Hz, 3H). [1419] Compound 195: LC-MS: (ESI, m/z): [M+H] + = 618. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.50 (d, J = 66.4 Hz, 1H), 5.97 (s, 2H), 5.21 – 4.57 (m, 2H), 4.54 – 4.28 (m, 2H), 4.07 – 3.73 (m, 3H), 3.62 – 3.37 (m, 3H), 3.23 – 2.79 (m, 3H), 2.54 (s, 1H), 2.30 (s, 3H), 1.97 – 1.73 (m, 1H), 1.71 – 1.45 (m, 3H), 1.40 (d, J = 6.2 Hz, 3H). [1420] Example 65 – Compound 196 (Isomer 1 & 2): 1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-1-azaspiro[3.3]heptan-5-ol
[1421] Step 1: tert-Butyl (5S,5aS,6S,9R)-12-(5-(benzyloxy)-1-azaspiro[3.3]heptan-1-yl)-2-(5- (bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000409_0001
[1422] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (400 mg, 0.439 mmol, intermediate 5) and 5-(benzyloxy)-1-azaspiro[3.3]heptane (99.0 mg, 0.485 mmol, intermediate 47) in DCM (3 mL) was added DIPEA (170 mg, 1.32 mmol) at room temperature. The resulting solution was stirred overnight at room temperature. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-50% EtOAc / petroleum ether) to afford 413 mg (91.0% yield) the mixture of diastereomers as a yellow solid. The mixture was separated by Chiral-Prep-HPLC with the following conditions: (Column: (R, R)-WHELK-O 15μm Kromasil, 2.11*25 cm, 5 μm; Mobile Phase A: Hex(0.5% 2M NH3-MeOH)-- HPLC, Mobile Phase B: IPA--HPLC; Flow rate: 20 mL/min; Gradient: isocratic 40; Wave Length: 220/254 nm; RT1(min): 36.994; RT2(min): 45.79; Sample Solvent: EtOH--HPLC) to yield 167 mg of the faster peak and 161 mg of the slower peak as white solid. LC-MS: (ESI, m/z): [M+H]+ = 1034. [1423] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(5-hydroxy-1-azaspiro[3.3]heptan-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000410_0001
[1424] Under hydrogen (3-4 atm), to a solution of tert-butyl (5S,5aS,6S,9R)-12-(5-(benzyloxy)-1- azaspiro[3.3]heptan-1-yl)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (167 mg, 0.161 mmol, the faster peak of last step) in EtOAc (5 mL) was added Pd/C (38.1 mg, 10% dry) and Pd(OH)2 (13.2 mg, 20%) at room temperature. The resulting solution was stirred overnight at room temperature. After filtration, the filtrate was concentrated under vacuum to afford 77 mg (crude) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 944. The crude was used for next step without further purification. [1425] Step 3: 1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-1-azaspiro[3.3]heptan-5-ol
Figure imgf000410_0002
[1426] Under nitrogen, a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)- 4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(5-hydroxy-1-azaspiro[3.3]heptan-1-yl)- 5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (77.0 mg, 0.0816 mmol) in TFA (2.5 mL) was stirred at room temperature for 1 hour. The solvent was concentrated under vacuum. The crude product was purified by Prep-HPLC with the following conditions: (Column: XBridge BEH Shield RP18 Column, 30*150 mm, 5 μm; Mobile Phase A: Water (10 mmoL/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 41% B to 63% B in 9 min; Wave Length: 254/220 nm) to afford 18.9 mg (37.2% yield) of the title compound Compound 196 (Isomer 1) as a while solid. LC-MS: (ESI, m/z): [M+H]+ = 604. 1H NMR (300 MHz, DMSO-d6) δ 6.53 (d, J = 34.8 Hz, 1H), 5.98 (s, 2H), 5.56 (s, 1H), 5.29 – 4.99 (m, 1H), 4.54 – 4.31 (m, 1H), 4.18 (d, J = 22.8 Hz, 1H), 4.07 – 3.80 (m, 3H), 3.55 – 3.36 (m, 2H), 2.97 (d, J = 12.6 Hz, 1H), 2.84 – 2.67 (m, 1H), 2.45 – 2.16 (m, 6H), 2.14 – 1.79 (m, 3H), 1.70 – 1.48 (m, 3H), 1.42 (d, J = 6.3 Hz, 3H). [1427] Analogous to method described as above, the other isomer Compound 196 (Isomer 2) was prepared from the slower peak of step 1. LC-MS: (ESI, m/z): [M+H]+ = 604. 1H NMR (300 MHz, DMSO-d6) δ 6.53 (d, J = 38.1 Hz, 1H), 5.98 (s, 2H), 5.78 (s, 1H), 5.19 – 4.88 (m, 1H), 4.53 – 4.35 (m, 1H), 4.16 (s, 1H), 4.03 – 3.82 (m, 3H), 3.51 (d, J = 4.8 Hz, 1H), 3.41 (d, J = 5.4 Hz, 1H), 2.96 (d, J = 12.7 Hz, 1H), 2.82 – 2.67 (m, 1H), 2.47 – 2.15 (m, 6H), 2.13 – 1.83 (m, 3H), 1.73 – 1.48 (m, 3H), 1.42 (d, J = 6.3 Hz, 3H). [1428] Example 66 – Compound 197: 1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2-(hydroxymethyl)azetidine-2-carboxylic acid
Figure imgf000411_0001
[1429] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-(2-(difluoromethyl)-2-(hydroxymethyl)azetidin-1-yl)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate
Figure imgf000412_0001
[1430] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (200 mg, 0.220 mmol, intermediate 5), 2-(hydroxymethyl)azetidine-2-carboxylate (319 mg, 2.21 mmol, intermediate 48) and DIPEA (142 mg, 1.101 mmol) in THF (5 mL) was stirred at 50 oC for 5 hours. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0 - 50% EtOAc / petroleum ether) to afford 136 mg (63.5% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 976. [1431] Step 2: 1-((5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2- (hydroxymethyl)azetidine-2-carboxylic acid
Figure imgf000412_0002
[1432] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-(2-(difluoromethyl)-2-(hydroxymethyl)azetidin-1-yl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate(40.0 mg, 0.0410 mmol) and LiOH (2.95 mg, 0.123 mmol) in THF(1 mL) and water (0.33 mL) was stirred at room temperature for 1 hour. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-10% MeOH / DCM) to afford 35.0 mg (88.8% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H] + = 962. [1433] Step 3: 1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-2-(hydroxymethyl)azetidine-2-carboxylic acid
Figure imgf000413_0001
[1434] A solution of 1-((5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2- (hydroxymethyl)azetidine-2-carboxylic acid (35.0 mg, 0.0364 mmol) in TFA (2 mL) was stirred at room temperature for 1 hour. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 19*250 mm, 5μm; Mobile Phase A: Water (10 mmoL/L NH4HCO3), Mobile Phase B: MeOH; Flow rate: 25 mL/min; Gradient: 33% B to 52% B in 9 min; Wave Length: 254/220 nm; RT1(min): 8.83) to afford 7.2 mg (31.6% yield) of the title compound as white solid. LC-MS: (ESI, m/z): [M+H] + = 628. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.69 – 6.34 (m, 1H), 5.98 (s, 2H), 5.19 – 4.89 (m, 1H), 4.52 – 4.27 (m, 1H), 4.15 – 3.77 (m, 5H), 3.66 – 3.42 (m, 3H), 3.05 – 2.88 (m, 1H), 2.50 – 2.42 (m, 1H), 2.31 (s, 3H), 2.26 – 2.11 (m, 1H), 1.97 – 1.82 (m, 1H), 1.72 – 1.50 (m, 3H), 1.46 – 1.38 (m, 2H), 1.34 (s, 1H). [1435] Example 67 – Compound 198 (Mixture of Isomers & Isomer 1 & 2): (1- ((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen- 12-yl)-2-((difluoromethoxy)methyl)azetidin-2-yl)methanol
[1436] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-(2-((difluoromethoxy)methyl)-2-(methoxycarbonyl)azetidin-1-yl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000414_0001
[1437] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(2-(hydroxymethyl)-2-(methoxycarbonyl) azetidin-1- yl)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (220 mg, 0.231 mmol, Example 66, Compound 197, step 1) and KOAc (133 mg, 1.35 mmol) in DCM (3 mL) and water (1 mL) was added (bromodifluoromethyl)trimethylsilane (275 mg, 1.35 mmol) at room temperature. The solution was stirred at room temperature for 2 hours. The reaction mixture was diluted with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-60% EtOAc / petroleum ether) to afford 115 mg (49.7% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 1026. [1438] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-(2-((difluoromethoxy)methyl)-2-(hydroxymethyl)azetidin-1-yl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000415_0001
[1439] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-(2-((difluoromethoxy)methyl)-2-(methoxycarbonyl) azetidin- 1-yl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate(115 mg, 0.110 mmol) and LiBH4 (4.93 mg, 0.221 mmol) in THF (2 mL) was stirred at room temperature for 2 hours. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-12% MeOH / DCM) to afford 80.0 mg (44.7% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H] + = 998. [1440] Step 3: (1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-2-((difluoromethoxy)methyl)azetidin-2-yl)methanol
Figure imgf000415_0002
[1441] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-(2-((difluoromethoxy)methyl)-2-(hydroxymethyl)azetidin-1- yl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate(50.0 mg, 0.0502 mmol) in TFA (5 mL) was stirred at room temperature for 2 hours. The solvent was concentrated under vacuum. The crude product was purified by Prep-HPLC with the following conditions: (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 25% B to 48% B in 10 min, 48% B; Wave Length: 254/220 nm; RT1(min): 9.87) to afford 12 mg the mixture of diastereomers as a white solid (Compound 198; mixture of isomers). The mixture was separated by Chiral-Prep-HPLC (Column: CHIRALPAK IK 2*25 cm, 5 μm; Mobile Phase A: HEX (0.5% 2 M NH3-MeOH), Mobile Phase B: EtOH; Flow rate: 20 mL/min; Gradient: isocratic 30; Wave Length: 220/254 nm; RT1(min): 9.15; RT2(min): 12.254; Sample Solvent: EtOH) to afford 2.20 mg Compound 198 (Isomer 1) (the faster peak) and 2.00 mg Compound 198 (Isomer 2) (the slower peak) as white solids. [1442] Compound 198 (Mixture of Isomers):LC-MS: (ESI, m/z): [M+H] + = 658. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.95 – 6.35 (m, 2H), 5.97 (s, 2H), 5.74 – 4.85 (m, 2H), 4.55 – 4.27 (m, 2H), 4.16 – 4.01 (m, 1H), 3.96 – 3.63 (m, 5H), 3.57 – 3.47 (m, 1H), 3.45 – 3.38 (m, 1H), 3.05 – 2.89 (m, 1H), 2.41 – 2.11 (m, 5H), 1.97 – 1.75 (m, 1H), 1.69 – 1.49 (m, 3H), 1.45 – 1.35 (m, 3H). [1443] Compound 198 (Isomer 1):LC-MS: (ESI, m/z): [M+H] + = 658. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.94 – 6.35 (m, 2H), 5.97 (s, 2H), 5.73 – 4.86 (m, 2H), 4.56 – 4.28 (m, 2H), 4.15 – 4.01 (m, 1H), 3.97 – 3.62 (m, 5H), 3.56 – 3.47 (m, 1H), 3.44 – 3.38 (m, 1H), 3.05 – 2.89 (m, 1H), 2.42 – 2.11 (m, 5H), 1.97 – 1.74 (m, 1H), 1.70 – 1.49 (m, 3H), 1.44 – 1.35 (m, 3H). [1444] Compound 198 (Isomer 2):LC-MS: (ESI, m/z): [M+H]+ = 658. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.94 – 6.36 (m, 2H), 5.97 (s, 2H), 5.72 – 4.86 (m, 2H), 4.57 – 4.28 (m, 2H), 4.15 – 4.02 (m, 1H), 3.97 – 3.62 (m, 5H), 3.57 – 3.47 (m, 1H), 3.44 – 3.38 (m, 1H), 3.06 – 2.89 (m, 1H), 2.43 – 2.11 (m, 5H), 1.96 – 1.74 (m, 1H), 1.71 – 1.49 (m, 3H), 1.45 – 1.35 (m, 3H) [1445] Example 68 – Compound 199: ((2R,3R)-1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-3-(methylsulfonyl)azetidin-2- yl)methanol
Figure imgf000416_0001
[1446] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((2R,3R)-2-(hydroxymethyl)-3-(methylthio)azetidin-1-yl)-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate
Figure imgf000417_0001
[1447] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (119 mg, 0.131 mmol, intermediate 5) and DIPEA (169 mg, 1.31 mmol) in THF (3 mL) was added ((2R,3R)- 3-(methylthio)azetidin-2-yl)methanol (97.7 mg, 0.729 mmol, intermediate 49) at room temperature. The resulting solution was stirred for 1 h at room temperature. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-50% EtOAc / petroleum ether) to afford 112 mg (88.9% yield) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 964. [1448] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((2R,3R)-2-(hydroxymethyl)-3-(methylsulfonyl)azetidin-1-yl)- 5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate
Figure imgf000417_0002
[1449] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((2R,3R)-2-(hydroxymethyl)-3-(methylthio) azetidin- 1-yl)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (112 mg, 0.116 mmol), Na2WO4 (34.1 mg, 0.116 mmol) and PhPO3H2 (18.4 mg, 0.116 mmol) in ACN (5 mL) and water (1 mL) was added H2O2 (1.27 mL, 30%) at 0℃ . The solution was stirred at room temperature for 3 hours and then quenched with aq. Na2S2O3. The solution was extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-100% EtOAc / petroleum ether) to afford 121 mg (93.8% yield) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 996. [1450] Step 3: ((2R,3R)-1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-3-(methylsulfonyl)azetidin-2-yl)methanol
Figure imgf000418_0001
[1451] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((2R,3R)-2-(hydroxymethyl)-3-(methylsulfonyl) azetidin-1-yl)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (100 mg, 0.0101 mmol) in TFA (2 mL) was stirred at room temperature for 0.5 hour. The solvent was concentrated under vacuum. The crude product was purified by Prep-HPLC with the following conditions: (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 20% B to 40% B in 10.5 min; Wave Length: 254/220 nm; RT1(min): 10.62) to afford 27.1 mg (40.9% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 656. 1H NMR (400 MHz, DMSO-d6) δ 6.51 (d, J = 49.0 Hz, 1H), 6.00 (s, 2H), 5.13 (d, J = 12.8, 2.6 Hz, 1H), 4.82 (s, 1H), 4.49 – 4.37 (m, 2H), 4.36 – 4.27 (m, 1H), 4.17 (d, J = 37.2 Hz, 2H), 3.93 (d, J = 9.0 Hz, 2H), 3.50 (s, 1H), 3.41 (d, J = 5.5 Hz, 1H), 3.13 (s, 3H), 2.98 (d, J = 12.7 Hz, 1H), 2.79 – 2.68 (m, 1H), 2.30 (s, 3H), 2.01 – 1.73 (m, 1H), 1.69 – 1.49 (m, 3H), 1.47 – 1.36 (m, 3H). [1452] Example 69 – Compound 200: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-((S)-2- (methoxymethyl)-2-methylazetidin-1-yl)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4- (trifluoromethyl)aniline
[1453] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((S)-2-(hydroxymethyl)-2-methylazetidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000419_0001
[1454] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro- 5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (150 mg, 0.165 mmol, intermediate 5), (S)-(2-methylazetidin-2-yl)methanol (25.3 mg, 0.250 mmol, intermediate 54) and DIPEA (63.8 mg, 0.495 mmol) in THF (2.5 mL) was stirred at 50 °C overnight. The solution was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-10% MeOH / DCM) to afford 148 mg (96.4% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 932. [1455] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((S)-2-(methoxymethyl)-2-methylazetidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000420_0001
[1456] Under nitrogen, to a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((S)-2-(hydroxymethyl)-2- methylazetidin-1-yl)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (60.1 mg, 0.0645 mmol) in THF (1.5 mL) was added NaH (6.4 mg, 0.160 mmol, 60% in oil) at 0 °C and stirred at 0 °C for 0.5 h. Then CH3I (9.2 mg, 0.0648 mmol) was added at 0 °C. The solution was stirred at room temperature overnight. The reaction was quenched with aqueous NH4Cl and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-10% MeOH / DCM) to afford 72.2 mg (67.3% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 946. [1457] Step 3: 2-Fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-((S)-2-(methoxymethyl)-2-methylazetidin- 1-yl)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000420_0002
[1458] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((S)-2-(methoxymethyl)-2-methylazetidin-1-yl)-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (72.1 mg, 0.0762 mmol) in TFA (2.5 mL) was stirred at room temperature for 1 h. Then the solution was concentrated under vacuum. The crude product was purified by Prep-HPLC with the following conditions: (Column: XBridge Prep Shield RP OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient (B%): 37% B to 62% B in 10 min; Wave Length: 254/220 nm; RT1(min): 8.13) to afford 16.7 mg (36.1 % yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 606. 1H NMR (400 MHz, DMSO-d6, ppm) δ 6.65 – 6.37 (m, 1H), 6.04 – 5.89 (m, 2H), 5.14 – 4.97 (m, 1H), 4.45 – 4.32 (m, 1H), 4.02 – 3.76 (m, 4H), 3.58 – 3.36 (m, 3H), 3.32 (s, 2H), 3.24 (s, 1H), 3.03 – 2.87 (m, 1H), 2.85 – 2.68 (m, 1H), 2.43 – 2.35 (m, 1H), 2.31 (s, 3H), 2.03 – 1.93 (m, 1H), 1.92 – 1.80 (m, 1H), 1.72 – 1.52 (m, 3H), 1.49 (d, J = 8.2 Hz, 3H), 1.41 (d, J = 6.3 Hz, 3H). [1459] Example 70 – Compound 201: 2-((S)-1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2-methylazetidin-2-yl)acetonitrile
Figure imgf000421_0001
[1460] Step 1: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((S)-2-methyl-2- (((methylsulfonyl)oxy)methyl)azetidin-1-yl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000421_0002
[1461] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((S)-2-(hydroxymethyl)-2-methylazetidin-1-yl)-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (55.1 mg, 0.0591 mmol, Example 69, Compound 200, step 1) in THF (1.5 mL) was added DIPEA (61.2 mg, 0.474 mmol) and Ms2O (41.2 mg, 0.237mmol) at room temperature. The solution was stirred at room temperature for overnight. The resulting solution was partitioned between water and EtOAc. The separated organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to afford 69.2 mg (crude) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 1010. The crude was used for next step without further purification. [1462] Step 2: tert-Butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((S)-2-(cyanomethyl)-2-methylazetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000422_0001
[1463] To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((S)-2-methyl-2-(((methylsulfonyl) oxy)methyl)azetidin-1-yl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (69.1 mg, 0.0684 mmol) in DMF (1.5 mL) was added NaCN (10.9 mg, 0.222 mmol) at room temperature. The solution was stirred at room temperature overnight. The resulting solution was partitioned between water and EtOAc. The separated organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-10% MeOH / DCM) to afford 45.3 mg (69.9% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 941. [1464] Step 3: 2-((S)-1-((5S,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2-methylazetidin-2-yl)acetonitrile [1465] A solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-12-((S)-2-(cyanomethyl)-2-methylazetidin-1-yl)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (45.1 mg, 0.0479 mmol) in TFA (1.5 mL) was stirred at room temperature for 1 h. Then the solution was concentrated under vacuum. The crude product was purified by Prep-HPLC with the following conditions: (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient (B%): 23% B to 43% B in10.5min; Wave Length: 254/220 nm; RT1(min): 8.17) to afford 11.4 mg (39.6 % yield) of the title compound as a light yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 601. 1H NMR (400 MHz, DMSO-d6, ppm) δ 6.64 – 6.33 (m, 1H), 6.03 (s, 2H), 4.97 – 4.76 (m, 1H), 4.44 – 4.26 (m, 1H), 4.04 – 3.77 (m, 3H), 3.54 – 3.41 (m, 1H), 3.34 (s, 2H), 2.91 (d, J = 12.6 Hz, 1H), 2.67 – 2.53 (m, 1H), 2.38 – 2.23 (m, 3H), 1.99 (s, 1H), 1.82 (s, 2H), 1.67 – 1.45 (m, 3H), 1.39 (d, J = 6.2 Hz, 3H), 1.19 (s, 3H). [1466] Example 71 – Compounds 202-214
Figure imgf000423_0001
[1467] Step 1 [1468] A solution of an azetidine precursor (approximately 0.10 mmol), tert-butyl (5S,5aS,6S,9R)- 2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5- methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (42.5 mg, 0.0467 mmol, intermediate 5) and DIPEA (32.2 mg, 0.249 mmol) in THF (1.5 mL) was stirred at 50 °C overnight. The solution was concentrated under vacuum. The residue was purified by C18 column to afford the product of Example 71 – Step 1. [1469] Step 2
Figure imgf000424_0001
[1470] A solution of the product from Example 71 – Step 1 (approximately 0.0425 mmol) in TFA (2 mL) was stirred at room temperature for 1 h. The solvent was concentrated under vacuum. The residue was purified by C18 column to afford the product of Example 71 – Step 2. When a diastereomeric mixture forms, the mixture was separated by chiral-SFC to afford pure isomers. [1471] Each compound in Table 17 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described Example 71. Table 17.
Figure imgf000424_0002
Figure imgf000425_0001
Figure imgf000426_0001
[1472] Example 72 – Compound 215: (R)-3-(((5R,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)-2-methylpropanoic acid
[1473] Step 1: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((R)-3-methoxy-2-methyl-3-oxopropoxy)-5-(trifluoromethyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate
Figure imgf000427_0001
[1474] Under nitrogen, to a solution of methyl (R)-3-hydroxy-2-methylpropanoate (35.6 mg, 0.302 mmol) in DMF (2.5 mL) was added NaH (23.5mg, 0.59mmol, 60% in oil) at 0 oC. The resulting solution was stirred for 30 min at room temperature. Then tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(methylsulfonyl)- 5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (141 mg, 0.157 mmol, intermediate 18) was added and the solution was stirred at room temperature for 3 hours. The reaction was quenched with aqueous NH4Cl and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-10% MeOH / DCM) to afford 117 mg (80.4% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 1003. [1475] Step 2: (R)-3-(((5R,5aS,6S,9R)-2-(5-(Bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)-2- methylpropanoic acid
Figure imgf000428_0001
[1476] A solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((R)-3-methoxy-2-methyl-3-oxopropoxy)-5- (trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (117 mg, 0.117 mmol) and LiOH (8.50 mg, 0.354 mmol) in water (0.3 mL) and THF (1.5 mL) was stirred at room temperature for 2 hours. The reaction mixture was adjusted pH about 7 with aq. citric acid. The resulting solution was partitioned between water and EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum to afford 112 mg (crude) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 989 [1477] Step 3: (R)-3-(((5R,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)- 1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)-2-methylpropanoic acid
Figure imgf000428_0002
[1478] A solution of (R)-3-(((5R,5aS,6S,9R)-2-(5-(Bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-(trifluoromethyl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen- 12-yl)oxy)-2-methylpropanoic acid (112 mg, 0.113 mmol) in TFA (2.5 mL) was stirred at room temperature for 0.5 hours. The solvent was concentrated under vacuum. The residue was purified by C18 column (gradient: 0-40% ACN in water (0.05% NH4HCO3)) to afford 28.4 mg (36.9% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 649. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.57 (s, 1H), 6.07 (s, 2H), 5.63 (s, 1H), 5.16 (dd, J = 12.9, 2.7 Hz, 1H), 4.48 (dd, J = 10.5, 7.0 Hz, 1H), 4.39 (dd, J = 10.4, 5.1 Hz, 2H), 3.55 (dd, J = 26.5, 6.2 Hz, 2H), 3.11 (d, J = 12.8 Hz, 1H), 2.92 – 2.82 (M, 1H), 2.32 (s, 3H), 1.94 – 1.80 (m, 2H), 1.73 – 1.62 (m, 1H), 1.62 – 1.52 (m, 1H), 1.19 (d, J = 7.2 Hz, 3H). [1479] Example 73 – Compound 216: 3-(((5R,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)-2,2-dimethylpropanoic acid
Figure imgf000429_0001
[1480] Step 1: 3-(((5R,5aS,6S,9R)-2-(5-(Bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)-2,2- dimethylpropanoic acid
[1481] Under nitrogen, to a solution of 3-hydroxy-2,2-dimethylpropanoic acid (35.5 mg, 0.301 mmol) in DMF (2.5 mL) was added NaH (24.2 mg, 0.605 mmol, 60% in oil) at 0 oC. The resulting solution was stirred for 30 min at room temperature. Then tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(methylsulfonyl)- 5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (141 mg, 0.157 mmol, intermediate 18) was added and the solution was stirred at room temperature for 3 hours. The reaction was quenched with aqueous NH4Cl and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0%-10% MeOH / DCM) to afford 102 mg (70.1% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 1003. [1482] Step 2: 3-(((5R,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)-2,2-dimethylpropanoic acid
Figure imgf000430_0001
[1483] A solution of 3-(((5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)-2,2- dimethylpropanoic acid (102 mg, 0.102 mmol) in TFA (2 mL) was stirred at room temperature for 0.5 hours. The solvent was concentrated under vacuum. The crude product was purified by Prep- HPLC (conditions: Column: XBridge Prep OBD C18 Column, 30*150 mm, 5 μm; Mobile Phase A: Water(10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 22% B to 42% B in 10.5 min; Wave Length: 254/220 nm; RT1(min): 7.07) to afford 29.6 mg (43.8% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 663. 1H NMR (300 MHz, DMSO-d6, ppm) δ 6.54 (s, 1H), 6.06 (s, 2H), 5.62 (s, 1H), 5.14 (dd, J = 12.8, 2.6 Hz, 1H), 4.36 (d, J = 12.8 Hz, 3H), 3.57 (d, J = 5.2 Hz, 1H), 3.50 (s, 1H), 3.09 (d, J = 12.8 Hz, 1H), 2.37 – 2.23 (m, 3H), 1.83 (s, 2H), 1.62 (dd, J = 16.1, 7.6 Hz, 2H), 1.21 (s, 6H). [1484] Each compound in Table 18 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described Example 73. Table 18.
Figure imgf000431_0001
[1485] Example 74 – Compound 223: 2-(1-((5R,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2-(hydroxymethyl) azetidin-2- yl)acetic acid [1486] Step 1: 2-(1-((5R,5aS,6S,9R)-2-(5-(bis(4-Methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2- (methoxycarbonyl)azetidin-2-yl)acetic acid
Figure imgf000432_0001
[1487] To a solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (300 mg, 0.311 mmol, intermediate 18), DIPEA (401 mg, 3.11 mmol) in THF (3 mL) was added 2- (2-(methoxycarbonyl)azetidin-2-yl)acetic acid (383 mg, 1.55 mmol, intermediate 46). The reaction solution was stirred at 60 oC for 12 hours. The reaction solution was cooled to room temperature and diluted with water. The solution was extracted with EtOAc. The combined organic layers were dried over Na2SO4 and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-80% EtOAc / petroleum ether) to afford 210 mg the mixture of diastereomers as a white solid. The mixture were separated by Chiral-Prep-HPLC with the following conditions: (Column: CHIRAL ART Cellulose-SB; Mobile Phase A: HeX (0.1% FA), Mobile Phase B: IPA: DCM=1: 1; Flow rate: 20 mL/min; Gradient (B%): isocratic 10; Wave Length: 220/254 nm; RT1(min): 28.189; RT2(min): 40.387; Sample Solvent: EtOH) to afford 60 mg of the faster peak and 90 mg of the slower peak as white solids. LC-MS: (ESI, m/z): [M+H] + = 1058. [1488] Step 2: 2-(1-((5R,5aS,6S,9R)-2-(5-(Bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2- (hydroxymethyl)azetidin-2-yl)acetic acid
Figure imgf000433_0001
[1489] A solution of 2-(1-((5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2- (methoxycarbonyl)azetidin-2-yl)acetic acid (60.0 mg, 0.0568 mmol) (from the faster peak of last step) and LiBH4 (3.74 mg, 0.170 mmol) in THF (2 mL) was stirred at room temperature for 2 hours. The solvent was concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0-10% MeOH / DCM) to afford 50.0 mg (85.6% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H] + = 1030. [1490] Step 3: 2-(1-((5R,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-2-(hydroxymethyl)azetidin-2-yl)acetic acid
Figure imgf000433_0002
[1491] A solution of 2-(1-((5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2- (hydroxymethyl)azetidin-2-yl)acetic acid (50.0 mg, 0.0486 mmol) in TFA (5 mL) was stirred at room temperature for 2 hours. The solvent was concentrated under vacuum. The residue was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5 μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient (B%): 17% B to 37% B in10 min; Wave Length: 254/220 nm; RT1(min): 9.57) to afford 11.2 mg (36.3% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 690. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.66 – 6.35 (m, 1H), 6.00 (s, 2H), 5.61 – 5.34 (m, 1H), 5.23 – 4.90 (m, 1H), 4.28 (t, J = 10.9 Hz, 1H), 4.01 – 3.80 (m, 3H), 3.74 – 3.64 (m, 1H), 3.59 – 3.44 (m, 2H), 3.10 – 2.98 (m, 1H), 2.97 – 2.84 (m, 1H), 2.81 – 2.71 (m, 1H), 2.56 – 2.51 (m, 1H), 2.46 – 2.34 (m, 2H), 2.32 – 2.24 (m, 4H), 2.04 – 1.73 (m, 2H), 1.71 – 1.46 (m, 2H). [1492] Example 75 – Compound 224: (R)-1-((5R,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)pyrrolidine-3-carboxylic acid
Figure imgf000434_0001
[1493] Step 1: (3R)-1-((5R,5aS)-2-(5-(Bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12- yl)pyrrolidine-3-carboxylic acid [1494] A solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (200 mg, 0.207 mmol, intermediate 18), (R)-pyrrolidine-3-carboxylic acid (95.7 mg, 0.831 mmol) and DIPEA (532 mg, 4.13 mmol) in tetrahydrofuran (7 mL) was stirred at room temperature for 1.5 hours. The solution was concentrated under vacuum. The residue was purified by flash chromatography on silica gel eluting (gradient: 0-10% MeOH/ DCM) to afford 148 mg (71.4% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 1000. [1495] Step 2: (R)-1-((5R,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)pyrrolidine-3-carboxylic acid
Figure imgf000435_0001
[1496] A solution of (3R)-1-((5R,5aS)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-14-(tert-butoxycarbonyl)-1-fluoro-5-(trifluoromethyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12- yl)pyrrolidine-3-carboxylic acid (140 mg, 0.14 mmol) in 2,2,2-trifluoroacetic acid (5 mL) was stirred at room temperature for 1 hour. The solvent was concentrated under vacuum. The residue was purified by prep-HPLC (Column: XBridge BEH Shield RP18 Column, 30*150 mm, 5 μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 15%B to 35%B in 10 min; Wave Length: 254/220 nm) to afford 43.2 mg (46.8% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 660. 1H NMR (500 MHz, DMSO-d6, ppm) δ 6.57 – 6.48 (m, 1H), 6.02 (br, 2H), 5.48 – 5.45 (m, 1H), 5.17 – 5.14 (m, 1H), 4.32 – 4.30 (m, 1H), 3.85 – 3.48 (m, 6H), 3.16 – 3.03 (m, 2H), 2.31 (s, 3H), 2.20 – 2.10 (m, 2H), 2.07 – 1.99 (m, 1H), 1.90 – 1.75 (m, 1H), 1.64 – 1.55 (m, 2H). [1497] Each compound in Table 19 below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described Example 75, Compound 224. Table 19.
Figure imgf000436_0001
[1498] Example 76 – Compound 228 (Isomer 1, 2, 3, & 4): 5-((6S,9S)-11-((2-Oxabicyclo [2.1.1] hexan-4-yl)methoxy)-1-fluoro-5-methyl-5,5a,6,7,8,9-hexahydro-4-oxa-3,7,9a,10,12-pentaaza-6,9- methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalen-2-yl)-2-fluoro-3-methyl-4- (trifluoromethyl)aniline
[1499] Step 1: tert-Butyl (1S,4S)-6-(1-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)ethyl)-2,5-diazabicyclo[2.2.1]heptane-2-carboxylate
Figure imgf000437_0001
[1500] To a solution of tert-butyl (1S,4S)-6-(1-hydroxyethyl)-2,5-diazabicyclo [2.2.1] heptane-2- carboxylate (503 mg, 2.08 mmol, intermediate 59) in THF (20 mL) was added NaH (249 mg, 6.23 mmol, 60% in mineral oil) under nitrogen at 0 oC. The resulting solution was stirred for 20 min at room temperature. Then 5,7-dichloro-8-fluoro-2-(methylthio)pyrido[4,3-d]pyrimidin-4(3H)-one (873 mg, 3.12 mmol, intermediate 1) was added and stirred at room temperature for 1.5 h. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash column chromatography on silica gel (gradient: 0%-80% EtOAc /petroleum ether) to afford 516 mg (44.5% yield) of the title compound as a yellow solid. LCMS (ESI, m/z): [M+H]+ = 486. [1501] Step 2: tert-Butyl (6S,9S)-2-Chloro-1-fluoro-5-methyl-11-(methylthio)-5a,6,8,9-tetrahydro- 4-oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene-7(5H)- carboxylate
Figure imgf000438_0001
[1502] To a solution of tert-butyl (1S,4S)-6-(1-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)ethyl)-2,5-diazabicyclo[2.2.1]heptane-2-carboxylate (101 mg, 0.208 mmol) in dichloromethane (15 mL) under nitrogen was added DIPEA (134 mg, 1.04 mmol) and PyAOP (217 mg, 0.422 mmol) at room temperature. The solution was stirred for 2 h at room temperature. The resulting solution was partitioned between water and EtOAc. The organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-35% EtOAc / petroleum ether) to afford 24.1 mg (24.8% yield) of the title compound as a yellow solid. LCMS (ESI, m/z): [M+H]+ = 468. [1503] Step 3: tert-Butyl (6S,9S)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-11-(methylthio)-5a,6,8,9-tetrahydro-4-oxa-3,7,9a,10,12- pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene-7(5H)-carboxylate
Figure imgf000438_0002
[1504] A mixture of tert-butyl (6S,9S)-2-chloro-1-fluoro-5-methyl-11-(methylthio)-5a,6,8,9- tetrahydro-4-oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene- 7(5H)-carboxylate (24.1 mg, 0.0516 mmol), (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)boronic acid (108 mg, 0.226 mmol, intermediate 4), K3PO4 (2 mL, 1.5 M in H2O) and cataCXium A Pd G3 (8.3 mg, 0.0114 mmol) in THF (10 mL) was heated to 60 oC under nitrogen for 2h. The resulting solution was partitioned between water and EtOAc. The organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-50% EtOAc /petroleum ether) to afford 35.2 mg (83.1% yield) of the title compound as a yellow solid. LCMS (ESI m/z): [M+H]+ = 865. [1505] Step 4: tert-Butyl (6S,9S)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-11-(methylsulfonyl)-5a,6,8,9-tetrahydro-4-oxa- 3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene-7(5H)-carboxylate
Figure imgf000439_0001
[1506] To a solution of tert-butyl (6S,9S)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-11-(methylthio)-5a,6,8,9-tetrahydro-4-oxa-3,7,9a,10,12- pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene-7(5H)-carboxylate (35.2 mg, 0.0407 mmol) in EtOAc (10 mL) was added m-CPBA (20.8 mg, 0.122 mmol) at room temperature under nitrogen. After 1 h, the reaction was quenched by saturated aqueous Na2S2O3 solution and extracted with EtOAc. The combined organics was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-50% EtOAc / petroleum ether) to afford 27.5 mg (75.3% yield) of the title compound as a yellow solid. LCMS (ESI, m/z): [M+H]+ = 897. [1507] Step 5: tert-Butyl (6S,9S)-11-(((1S,4r)-2-oxabicyclo[2.1.1]hexan-4-yl)methoxy)-2-(5- (bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,8,9-tetrahydro-4-oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3- de]naphthalene-7(5H)-carboxylate
Figure imgf000439_0002
[1508] To an ice-cooled solution of tert-butyl (6S,9S)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro- 3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-11-(methylsulfonyl)-5a,6,8,9-tetrahydro-4- oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene-7(5H)- carboxylate (27.5 mg, 0.0307 mmol), (2-oxabicyclo[2.1.1]hexan-4-yl)methanol (10.5 mg, 0.0921 mmol) in toluene (2.5 mL) was added t-BuONa (6.03 mg, 0.0628 mmol) under nitrogen. The resulting solution was warmed to room temperature for 1 h. The reaction was partitioned between water and EtOAc. The organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-12% MeOH / DCM) to afford 17.3 mg (57.8% yield) of the title compound as a yellow solid. LCMS (ESI, m/z): [M+H]+ = 931. [1509] Step 6: 5-((6S,9S)-11-((2-Oxabicyclo[2.1.1]hexan-4-yl)methoxy)-1-fluoro-5-methyl- 5,5a,6,7,8,9-hexahydro-4-oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3- de]naphthalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline – Compound 228 (Isomer 1)
Figure imgf000440_0001
[1510] A solution of tert-butyl (6S,9S)-11-(((1S,4r)-2-oxabicyclo[2.1.1]hexan-4-yl)methoxy)-2-(5- (bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,8,9-tetrahydro-4-oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3- de]naphthalene-7(5H)-carboxylate (201 mg, 0.216 mmol) in TFA (5 mL) was stirred at room temperature for 0.5 h. The reaction was concentrated under vacuum, and the resulting residue was purified by Prep-HPLC with the following conditions: (Column: XBridge Prep Shield RP OBD C18 Column, 30 x 150 mm, 5μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 28% B to 58% B in10.5min; Wave Length: 254nm/220nm; RT1(min): 6.53) to afford 69.3 mg (54.1% yield) of the title compound as a white solid. LCMS (ESI, m/z): [M+H]+ = 591. 1H NMR (500 MHz, DMSO-d6) δ 6.74 – 6.39 (m, 1H), 6.01 (s, 2H), 5.36 (s, 1H), 4.71 (d, J = 11.8 Hz, 1H), 4.63 (d, J = 11.7 Hz, 1H), 4.51 (s, 1H), 4.40 (t, J = 16.4 Hz, 1H), 3.79 (s, 1H), 3.60 (s, 3H), 3.12 – 2.95 (m, 1H), 2.88 (d, J = 14.2 Hz, 1H), 2.33 (t, J = 2.4 Hz, 3H), 1.84 (q, J = 4.7, 3.9 Hz, 3H), 1.75 – 1.66 (m, 1H), 1.55 – 1.48 (m, 2H), 1.41 (d, J = 6.4 Hz, 3H). [1511] Analogous to method described as above, the isomer Compound 228 (Isomer 2) was prepared from intermediate 60. LCMS (ESI, m/z): [M+H]+ = 591.1H NMR (500 MHz, DMSO-d6) δ 6.71 – 6.36 (m, 1H), 6.01 (s, 2H), 5.36 (s, 1H), 4.96 – 4.91 (m, 1H), 4.76 – 4.58 (m, 2H), 4.51 (s, 1H), 3.92 (s, 1H), 3.75 (s, 1H), 3.61 (s, 2H), 3.05– 2.98 (m, 1H), 2.87 (d, J = 10.6 Hz, 1H), 2.32 (t, J = 2.5 Hz, 3H), 1.95 – 1.73 (m, 3H), 1.59 (d, J = 10.2 Hz, 1H), 1.51 – 1.48 (m, 2H), 1.16 (d, J = 6.8 Hz, 3H).
Figure imgf000441_0001
[1512] Analogous to method described as above, the isomer Compound 228 (Isomer 3) was prepared from intermediate 57. LCMS (ESI, m/z): [M+H]+ = 591.1H NMR (500 MHz, DMSO-d6) δ 6.55 (d, J = 77.3 Hz, 1H), 6.00 (s, 2H), 5.35 (s, 1H), 4.96 – 4.91 (m, 1H), 4.78 – 4.58 (m, 2H), 4.51 (s, 1H), 4.20 (s, 1H), 3.90 (s, 1H), 3.61 (d, J = 1.4 Hz, 2H), 3.25 – 3.15 (m, 1H), 2.75 (d, J = 10.0 Hz, 1H), 2.32 (d, J = 3.0 Hz, 3H), 1.99 (s, 1H), 1.92 – 1.78 (m, 2H), 1.63 (d, J = 9.5 Hz, 1H), 1.55 – 1.51 (m, 2H), 1.43 (d, J = 6.8 Hz, 3H).
Figure imgf000441_0002
[1513] Analogous to method described as above, the isomer Compound 228 (Isomer 4) was prepared from intermediate 58. LCMS (ESI, m/z): [M+H]+ = 591.1H NMR (500 MHz, DMSO-d6) δ 6.62 (s, 1H), 6.00 (s, 2H), 5.25 (s, 1H), 4.68 (t, J = 10.3 Hz, 2H), 4.60 (s, 1H), 4.51 (s, 1H), 3.92 (s, 1H), 3.83 (s, 1H), 3.60 (s, 2H), 3.09 (d, J = 9.7 Hz, 1H), 2.94 (s, 1H), 2.32 (d, J = 4.2 Hz, 3H), 1.96 (s, 1H), 1.86 – 1.79 (m, 2H), 1.71 (d, J = 9.9 Hz, 1H), 1.55 – 1.47 (m, 5H). [1514] Example 77 – Compound 229 (Isomer 1 & 2): (1-((6S,9S)-2-(5-Amino-4-fluoro-3- methyl-2-(trifluoromethyl) phenyl)-1-fluoro-5-methyl-5,5a,6,7,8,9-hexahydro-4-oxa-3,7,9a,10,12- pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalen-11-yl)-2-methylazetidin-2- yl)methanol
Figure imgf000442_0001
[1515] Step 1: tert-Butyl (6S,9S)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-11-(2-(hydroxymethyl)-2-methylazetidin-1-yl)-5-methyl-5a,6,8,9- tetrahydro-4-oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene- 7(5H)-carboxylate
Figure imgf000442_0002
[1516] A solution of tert-butyl (6S,9S)-2-(5-(bis(4-methoxybenzyl) amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-methyl-11-(methylsulfonyl)-5a,6,8,9-tetrahydro-4-oxa- 3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene-7(5H)-carboxylate (35.1 mg, 0.0392 mmol, Example 76, Compound 228 (Isomer 3), step 4), (2-methylazetidin-2- yl)methanol hydrogen chloride (10.8 mg, 0.0788 mmol) and DIPEA (25.3 mg, 0.196 mmol) in toluene (2.5 mL) was stirred at room temperature for 1 h. The resulting solution was partitioned between water and EtOAc. The organic layer was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by flash chromatography on silica gel (gradient: 0%-12% MeOH / DCM) to afford 25.1 mg (69.9% yield) of the title compound as a yellow solid. LCMS: (ESI, m/z): [M+H]+ = 918. [1517] Step 2: (1-((6S,9S)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5- methyl-5,5a,6,7,8,9-hexahydro-4-oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo [4,5] cyclohepta [1,2,3-de]naphthalen-11-yl)-2-methylazetidin-2-yl)methanol Compound 229 - (Isomer 1) [1518] A solution of tert-butyl (6S,9S)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-11-(2-(hydroxymethyl)-2-methylazetidin-1-yl)-5-methyl-5a,6,8,9- tetrahydro-4-oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene- 7(5H)-carboxylate (25.1 mg, 0.0273 mmol) in TFA (2.5 mL) was stirred at room temperature for 1 h. The reaction was concentrated under vacuum, and the resulting residue was purified by C18 column (solvent gradient: 0-60% ACN in water (0.05% NH4HCO3)) to yield 5.4 mg (33% yield) of the title compound as a white solid. LCMS: (ESI, m/z): [M+H]+ = 578. 1H NMR (500 MHz, DMSO-d6) δ 6.51 (d, J = 71.9 Hz, 1H), 5.94 (s, 2H), 5.84 – 4.92 (m, 2H), 4.85 – 4.81 (m, 1H), 4.12 (d, J = 19.8 Hz, 1H), 4.03 – 3.75 (m, 4H), 3.69 – 3.55 (m, 2H), 3.15 – 3.00 (m, 1H), 2.73 – 2.65 (m, 1H), 2.43 – 2.35 (m, 1H), 2.30 (s, 3H), 2.05 – 1.79 (m, 2H), 1.60 (d, J = 9.7 Hz, 1H), 1.53 – 1.31 (m, 6H).
Figure imgf000443_0001
[1519] Analogous to method described as above, the Compound 229 (Isomer 2) was prepared from Example 76, Compound 228 (Isomer 4), step 4. LCMS (ESI, m/z): [M+H]+ = 578.1H NMR (500 MHz, DMSO-d6) δ 6.67 – 6.28 (m, 1H), 5.95 (s, 2H), 5.82 – 4.84 (m, 2H), 4.30 (s, 1H), 4.03 – 3.72 (m, 5H), 3.71 – 3.57 (m, 1H), 3.50 (s, 1H), 3.01 (d, J = 9.4 Hz, 1H), 2.92 – 2.88 (m, 1H), 2.42 – 2.34 (m, 1H), 2.30 (s, 3H), 1.92 – 1.82 (m, 2H), 1.67 (s, 1H), 1.55 – 1.38 (m, 6H). [1520] Example 78 – Compound 230: ((2S)-1-((6S,9S)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5-(trifluoromethyl)-5,5a,6,7,8,9-hexahydro-4-oxa-3,7,9a,10,12- pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalen-11-yl)-2-methylazetidin-2- yl)methanol
[1521] Step 1: tert-Butyl (1S,4S)-6-(1-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d]pyrimidin-5-yl)oxy)-2,2,2-trifluoroethyl)-2,5-diazabicyclo[2.2.1]heptane-2- carboxylate
Figure imgf000444_0001
[1522] To an ice-cooled solution of tert-butyl (1S,4S)-6-(2,2,2-trifluoro-1-hydroxyethyl)-2,5- diazabicyclo[2.2.1]heptane-2-carboxylate (301 mg, 1.02 mmol, intermediate 62) in THF (12 mL) was added NaH (123 mg, 3.08 mmol, 60% in mineral oil) under nitrogen. The resulting mixture was warmed to room temperature for 20 min. 5,7-Dichloro-8-fluoro-2-(methylthio)pyrido[4,3- d]pyrimidin-4(3H)-one (712 mg, 2.54 mmol, intermediate 1) was then added, and the solution was stirred at room temperature for 1.5 h. The reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc. The organic extract was dried over anhydrous sodium sulfate and concentrated under vacuum, and the resulting residue was purified by flash chromatography on silica gel (gradient: 0%-80% EtOAc / petroleum ether) to afford 426 mg (77.7% yield) of the title compound as a yellow solid. LCMS: (ESI, m/z): [M+H]+ = 540. [1523] Step 2: tert-Butyl (6S,9S)-2-chloro-1-fluoro-11-(methylthio)-5-(trifluoromethyl)-5a,6,8,9- tetrahydro-4-oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene- 7(5H)-carboxylate
Figure imgf000445_0001
[1524] To a solution of tert-butyl (1S,4S)-6-(1-((7-chloro-8-fluoro-2-(methylthio)-4-oxo-3,4- dihydropyrido[4,3-d] pyrimidin-5-yl)oxy)-2,2,2-trifluoroethyl)-2,5-diazabicyclo [2.2.1] heptane-2- carboxylate (403 mg, 0.752 mmol) in DCE (8 mL) was added DIPEA (481 mg, 3.73 mmol) and BOP-Cl (379 mg, 1.49 mmol) under nitrogen at room temperature. The resulting solution was warmed to 50 °C. After 4 h, the reaction was partitioned between water and EtOAc. The collected organic was dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting residue was purified by flash chromatography on silica gel (gradient: 0%-45% EtOAc / petroleum ether) to afford 266 mg (68.3% yield) of the title compound as a yellow solid. LCMS: (ESI, m/z): [M+H]+ = 522. [1525] Step 3: tert-Butyl (6S,9S)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-11-(methylthio)-5-(trifluoromethyl)-5a,6,8,9-tetrahydro-4-oxa- 3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene-7(5H)-carboxylate
Figure imgf000445_0002
[1526] A solution of tert-butyl (6S,9S)-2-chloro-1-fluoro-11-(methylthio)-5-(trifluoromethyl)- 5a,6,8,9-tetrahydro-4-oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo [4,5] cyclohepta[1,2,3- de]naphthalene-7(5H)-carboxylate (266 mg, 0.509 mmol), (5-(bis(4-methoxybenzyl)amino)-4- fluoro-3-methyl-2-(trifluoromethyl)phenyl)boronic acid (486 mg, 1.02 mmol, intermediate 4), K3PO4 (2 mL, 1.5 M in H2O) and cataCXium A Pd G3 (79.6 mg, 0.112 mmol) in THF (10 mL) was heated for 5 h at 60 °C under nitrogen. The resulting mixture was partitioned between water and EtOAc. The collected organic was dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting residue was purified by flash chromatography on silica gel (gradient: 0%- 50% EtOAc / petroleum ether) to afford 396 mg (84.6% yield) of the title compound as a yellow solid. LCMS: (ESI, m/z): [M+H]+ = 919. [1527] Step 4: tert-Butyl (6S,9S)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-11-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,8,9-tetrahydro-4- oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene-7(5H)- carboxylate
Figure imgf000446_0001
[1528] To a solution of tert-butyl (6S,9S)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-11-(methylthio)-5-(trifluoromethyl)-5a,6,8,9-tetrahydro-4-oxa- 3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene-7(5H)-carboxylate (396 mg, 0.428 mmol) in EtOAc (10 mL) was added m-CPBA (218 mg, 1.27 mmol) at room temperature under nitrogen. After 1 h, the reaction was quenched with saturated aqueous Na2S2O3 solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting residue was purified by flash chromatography on silica gel (gradient: 0%-65% EtOAc / petroleum ether) to afford 356 mg (83.1% yield) of the title compound as a yellow solid. LCMS: (ESI, m/z): [M+H]+ = 951. [1529] Step 5: tert-Butyl (6S,9S)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-11-((S)-2-(hydroxymethyl)-2-methylazetidin-1-yl)-5- (trifluoromethyl) -5a,6,8,9-tetrahydro-4-oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo [4,5] cyclohepta [1,2,3-de]naphthalene-7(5H)-carboxylate [1530] To a solution of tert-butyl (6S,9S)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-11-(methylsulfonyl)-5-(trifluoromethyl)-5a,6,8,9-tetrahydro-4- oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalene-7(5H)- carboxylate (156 mg, 0.174 mmol) and (S)-(2-methylazetidin-2-yl)methanol (32.8 mg, 0.322 mmol, intermediate 54) in THF (6 mL) was added DIPEA (84.1 mg, 0.652 mmol) under nitrogen at room temperature. After 2 h, the resulting solution was partitioned between water and EtOAc. The organic was dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting residue was purified by flash chromatography on silica gel (gradient: 0%-80% EtOAc / petroleum ether) to afford 103 mg (64.6% yield) of the title compound as a yellow solid. LCMS (ESI, m/z): [M+H]+ = 972. [1531] Step 6: ((2S)-1-((6S,9S)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-(trifluoromethyl)-5,5a,6,7,8,9-hexahydro-4-oxa-3,7,9a,10,12-pentaaza-6,9- methanobenzo[4,5]cyclohepta[1,2,3-de]naphthalen-11-yl)-2-methylazetidin-2-yl)methanol
Figure imgf000447_0001
[1532] A solution of tert-butyl (6S,9S)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-11-((S)-2-(hydroxymethyl)-2-methylazetidin-1-yl)-5- (trifluoromethyl) -5a,6,8,9-tetrahydro-4-oxa-3,7,9a,10,12-pentaaza-6,9-methanobenzo [4,5] cyclohepta [1,2,3-de]naphthalene-7(5H)-carboxylate (103 mg, 0.106 mmol) in TFA (3.5 mL) was stirred at room temperature for 0.5 h. The solvent was concentrated under vacuum, and the crude product was purified by Prep-HPLC with the following conditions: (Column: Xselect CSH OBD Column, 30 x 150 mm, 5um; Mobile Phase A: Water (0.1% FA), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 16% B to 29% B in 10 min; Wave Length: 254/220 nm; RT1(min): 10.17) to afford 13.6 mg (20.0 % yield) of the title compound as a white solid. LCMS (ESI, m/z): [M+H]+ = 632. 1H NMR (500 MHz, DMSO-d6) δ 6.54 (d, J = 57.5 Hz, 1H), 5.99 (s, 2H), 5.62 – 4.85 (m, 3H), 4.28 – 4.12 (m, 1H), 4.09 – 4.01 (m, 1H), 3.95 – 3.78 (m, 3H), 3.76 – 3.54 (m, 1H), 3.50 (d, J = 17.7 Hz, 1H), 3.04 (d, J = 28.2 Hz, 2H), 2.47 – 2.37 (m, 1H), 2.32 (s, 3H), 2.18 – 1.91 (m, 2H), 1.82 – 1.75 (m, 1H), 1.49 (d, J = 38.2 Hz, 3H). [1533] Example 79 – Compound 231: 5-((5aS,6S,9R)-12-((2-Oxabicyclo[2.1.1]hexan-4- yl)methoxy)-5-(difluoromethyl)-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000448_0001
[1534] Step 1: tert-Butyl (5R,5aS,6S,9R)-12-(((1S,4r)-2-oxabicyclo[2.1.1]hexan-4-yl)methoxy)-2- (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-5-(difluoromethyl)- 1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate
Figure imgf000448_0002
[1535] To an ice-cooled solution of (2-oxabicyclo[2.1.1]hexan-4-yl)methanol (24.1 mg, 0.210 mmol) in THF (3.00 mL) was added NaH (33.7 mg, 0.840 mmol, 60% in mineral oil) under nitrogen. The resulting solution was warmed to room temperature for 30 min. The reaction mixture was cooled to 0 °C before the addition of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-5-(difluoromethyl)-1-fluoro- 12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.200 g, 0.210 mmol, intermediate 63). The mixture was warmed to room temperature for 1 h. The reaction was quenched with saturated aqueous NH4Cl solution and extracted with EtOAc. The combined organic was dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting residue was purified by flash chromatography on silica gel (gradient: 0%-100% EtOAc / petroleum ether) to afford 126 mg (60.8% yield) of the title compound as a brown solid. LC-MS: (ESI, m/z): [M+H]+ = 981. [1536] Step 2: 5-((5aS,6S,9R)-12-((2-Oxabicyclo[2.1.1]hexan-4-yl)methoxy)-5-(difluoromethyl)- 1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000449_0001
[1537] A solution of tert-butyl (5R,5aS,6S,9R)-12-(((1S,4r)-2-oxabicyclo[2.1.1] hexan-4- yl)methoxy)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-5- (difluoromethyl)-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (126 mg, 0.130 mmol) in TFA (2 mL) was stirred at room temperature for 1 h. The reaction was concentrated under vacuum. The crude product was purified by Prep-HPLC (Column: YMC Triart C18 ExRs, 30*150 mm, 5μm; Mobile Phase A: Water(10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 34% B to 54% B in10.5min; Wave Length: 254nm/220 nm; RT1(min): 8.7) to afford 29.1 mg (35.4% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 641. 1H NMR (300 MHz, DMSO-d6) δ 6.62 (t, J = 52.1 Hz, 2H), 6.06 (s, 2H), 5.14 (d, J = 12.0 Hz, 1H), 5.08 – 4.94 (m, 1H), 4.67 (s, 2H), 4.52 (t, J = 1.0 Hz, 1H), 4.24 (d, J = 9.5 Hz, 1H), 3.60 (d, J = 8.9 Hz, 2H), 3.57 (s, 2H), 3.09 (d, J = 12.7 Hz, 1H), 2.94 (s, 1H), 2.33 (s, 3H), 1.83 (t, J = 6.9 Hz, 4H), 1.61 (dd, J = 19.2, 11.3 Hz, 2H), 1.51 (dd, J = 4.6, 1.8 Hz, 2H). [1538] Example 80 – Compound 232: 5-((5R,5aS,6S,9R)-5-(Difluoromethyl)-1-fluoro-12-((1- (methylsulfonyl) cyclopropyl)methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline [1539] Step 1: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-5-(difluoromethyl)-1-fluoro-12-((1-(methylsulfonyl) cyclopropyl) methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate
Figure imgf000450_0001
[1540] To an ice-cooled solution of (1-(methylsulfonyl)cyclopropyl)methanol (23.8 mg, 0.160 mmol) in tetrahydrofuran was added NaH (12.7 mg, 0.320 mmol, 60% in mineral oil) under nitrogen. The resulting solution was warmed to room temperature for 30 min before being recooled to 0 °C, tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl) -5-(difluoromethyl)-1-fluoro-12-(methylsulfonyl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (150 mg, 0.160 mmol, intermediate 63) was added at 0 oC, and the reaction was warmed to room temperature for 1 h. The reaction was quenched with saturated aqueous NH4Cl solution and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting residue was purified by flash chromatography on silica gel (gradient: 0%-50% EtOAc / petroleum ether) to afford 100 mg (62.1% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 1017. [1541] Step 2: 5-((5R,5aS,6S,9R)-5-(Difluoromethyl)-1-fluoro-12-((1-(methylsulfonyl) cyclopropyl) methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-2-yl)-2-fluoro-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000451_0001
[1542] A solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-5-(difluoromethyl)-1-fluoro-12-((1-(methylsulfonyl) cyclopropyl) methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate (0.100 g, 0.0980 mmol) in 2,2,2-trifluoroacetic acid (2 mL) was stirred at room temperature for 30 min. The solvent was concentrated under vacuum, and the resulting crude product was purified by Prep-HPLC with the following conditions: (XBridge Prep OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water (10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 28% B to 48% B in10.5min; Wave Length: 254/220 nm; RT1(min): 9.95) to afford 25.3 mg (38.0% yield) of the title compound as a white solid.LC-MS: (ESI, m/z): [M+H]+ = 677. 1H NMR (300 MHz, DMSO-d6) δ6.88 – 6.32 (m, 2H), 6.07 (s, 2H), 5.14 (dd, J = 12.8, 2.5 Hz, 1H), 5.02 (dd, J = 17.9, 9.1 Hz, 1H), 4.70 (d, J = 5.3 Hz, 2H), 4.25 (d, J = 9.6 Hz, 1H), 3.62 – 3.52 (m, 2H), 3.14 (s, 4H), 2.91 (s, 1H), 2.37 – 2.29 (m, 3H), 1.82 (s, 2H), 1.70 – 1.53 (m, 2H), 1.48 – 1.35 (m, 2H), 1.39 – 1.21 (m, 2H). [1543] Example 81 – Compound 233: ((S)-1-((5R,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-5-(difluoromethyl)-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2-methylazetidin-2- yl)methanol
[1544] Step 1: tert-Butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-5-(difluoromethyl)-1-fluoro-12-((S)-2-(hydroxymethyl)-2-methylazetidin- 1-yl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate
Figure imgf000452_0001
[1545] A solution of (S)-(2-methylazetidin-2-yl)methanol (44.8 mg, 0.440 mmol, intermediate 54), DIPEA (104 mg, 0.810 mmol) and tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-5-(difluoromethyl)-1-fluoro- 12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate(140 mg, 0.15 mmol, intermediate 63) in THF (3 mL) was heated at 50 ℃ for 1 h. The reaction was diluted with water and extracted with EtOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting residue was purified by flash chromatography on silica gel (gradient: 0%- 100% EtOAc / petroleum ether) to afford 135mg (94.3% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ =968. [1546] Step 2: ((S)-1-((5R,5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl) phenyl)- 5-(difluoromethyl)-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-2-methylazetidin-2-yl)methanol
Figure imgf000453_0001
[1547] A solution of tert-butyl (5R,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-5-(difluoromethyl)-1-fluoro-12-((S)-2-(hydroxymethyl)-2- methylazetidin-1-yl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (135 mg, 0.140 mmol) in TFA (2 mL) was stirred at room temperature for 1 h. The solvent was concentrated under vacuum, and the resulting crude product was purified by Prep-HPLC (Column: XBridge Prep Shield RP OBD C18 Column, 30*150 mm, 5μm; Mobile Phase A: Water(10mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 33%B to 56%B in 10 min; Wave Length: 254/220 nm; RT1(min): 8.83) to afford 49.7 mg (56.8% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 628. 1H NMR (400 MHz, DMSO-d6) δ 6.71 – 6.35 (m, 2H), 6.00 (s, 2H), 5.48 – 4.90 (m, 2H), 4.90 – 4.79 (m, 1H), 4.19 – 4.12 (m, 1H), 3.96 – 3.69 (m, 2H), 3.60 (dd, J = 11.3, 3.6 Hz, 1H), 3.55 – 3.47 (m, 2H), 3.00 (t, J = 13.6 Hz, 1H), 2.84 (s, 1H), 2.40 (t, J = 8.1 Hz, 1H), 2.31 (s, 3H), 2.02 – 1.85 (m, 2H), 1.77 – 1.72 (m, 1H), 1.65 – 1.51 (m, 2H), 1.49 (d, J = 9.3 Hz, 3H). [1548] Example 82 – Compound 234: ((S)-1-((5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2- (trifluoromethyl) phenyl)-1-fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-2-methylazetidin-2-yl)methanol
[1549] Step 1: tert-Butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000454_0001
[1550] Under nitrogen, to a solution of tert-butyl (5aS,6S,9R)-2-chloro-1-fluoro-12-(methylthio)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (0.20 g, 0.43 mmol, intermediate 65), (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)boronic acid (0.510 g, 1.07 mmol, intermediate 4) and cataCXium A Pd G3 (62.2 mg, 0.0854 mmol) in THF (0.5 mL) was added K3PO4 (0.856 mL, 1.5 M in THF) at room temperature. The resulting solution was heated at 60 ℃ for 16 h. The reaction mixture was cooled to room temperature, diluted with water and extracted with ethyl acetate. The combined organic was dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting residue was purified by flash chromatography on silica gel (gradient: 0%-50% EtOAc / petroleum ether) to afford 344 mg (93.1% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 865. [1551] Step 2: tert-Butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000455_0001
[1552] To an ice-cooled solution of tert-butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4- fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(methylthio)-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (324 mg, 0.374 mmol) in EtOAc (0.5 mL) was added m-CPBA (194 mg, 1.12 mmol). The solution was warmed to room temperature for 1 hour. The reaction was quenched with Na2S2O3 aqueous and extracted with EtOAc. The combined organic was dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting residue was purified by flash chromatography on silica gel (gradient: 0%- 50% EtOAc / petroleum ether) to afford 254 mg (76.2% yield) of the title compound as a yellow oil. LC-MS: (ESI, m/z): [M+H]+ = 897. [1553] Step 3: tert-Butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((S)-2-(hydroxymethyl)-2-methylazetidin-1-yl)-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate
Figure imgf000455_0002
[1554] To a solution of tert-butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.10 g, 0.11 mmol) and (S)-(2-methylazetidin-2-yl)methanol (16.9 mg, 0.167 mmol, intermediate 54) in THF (1.5 mL) was added DIPEA (43.2 mg, 0.335 mmol) at room temperature. The resulting solution was heated at 50 ℃ for 18 h. The reaction mixture was cooled to room temperature and concentrated under vacuum. The resulting residue was purified by flash chromatography on silica gel (gradient: 0%-7% MeOH / DCM) to afford 94 mg (92% yield) of the title compound as a yellow solid. LC-MS: (ESI, m/z): [M+H]+ = 918. [1555] Step 4: ((S)-1-((5aS,6S,9R)-2-(5-Amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-12-yl)-2-methylazetidin-2-yl)methanol
Figure imgf000456_0001
[1556] A solution of tert-butyl (5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-1-fluoro-12-((S)-2-(hydroxymethyl)-2-methylazetidin-1-yl)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate (94.0 mg, 0.102 mmol) in TFA (1 mL) was stirred at room temperature for 1 h. The reaction mixture was concentrated under vacuum, and the crude product was purified by Prep-HPLC (Column: XBridge Prep OBD C18 Column, 30*150 mm, 5 μm; Mobile Phase A: Water (10 mmol/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 27% B to 47% B in 10.5 min; Wave Length: 254/220 nm; RT1(min): 11) to afford 28.8 mg (48.2% yield) of the title compound as a white solid. LC-MS: (ESI, m/z): [M+H]+ = 578. 1H NMR (500 MHz, DMSO-d6) δ 6.53 (d, J = 55.6 Hz, 1H), 5.96 (s, 2H), 5.61 – 4.57 (m, 2H), 4.42 (d, J = 13.2, 2.2 Hz, 1H), 4.33 – 4.17 (m, 1H), 3.99 – 3.76 (m, 3H), 3.73 – 3.61 (m, 1H), 3.55 (d, J = 9.0 Hz, 1H), 3.44 (d, J = 6.6, 2.2 Hz, 2H), 3.02 – 2.89 (m, 1H), 2.66 (d, J = 20.3 Hz, 1H), 2.44 – 2.15 (m, 4H), 2.00 – 1.87 (m, 1H), 1.66 (d, J = 7.7 Hz, 3H), 1.58 – 1.40 (m, 4H). [1557] Example 83 – Compound 235: 4-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)thiomorpholine 1,1-dioxide
[1558] Step 1: Into a 10 mL vial, thiomorpholine 1,1-dioxide (0.060 mmol, 8.1 mg) and cesium carbonate (0.060 mmol, 19.5 mg) were placed in THF (1.0 mL). Followed by tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-12-(methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.044 mmol, 40.0 mg). The mixture was stirred at RT. Upon completion, the reaction was quenched with sat. ammonium chloride, extracted with iPrOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting solid was used as is for the next deprotection step. [1559] Step 2: A solution of the above residue containing tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-12-(1,1- dioxidothiomorpholino)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate in trifluoroacetic acid (1.0 mL) was stirred at RT for 1 h. After completion, the solvent was removed under vacuum. The resulting residue was diluted with DCM and adjusted pH to 7.0 with sat. NaHCO3 solution. The resulting solution was extracted with DCM. The organic layer was washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by prep-HPLC with C18 column eluting with water/MeCN to afford 4-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)thiomorpholine 1,1-dioxide (7.7 mg, 26% yield). 1H NMR (400 MHz, DMSO) δ 6.58 and 6.43 (br, 1H), 5.98 (s, 2H), 5.03 – 4.95 (m, 1H), 4.40 (s, 1H), 4.26 (s, 4H), 3.92 (d, J = 9.2 Hz, 1H), 3.53 (s, 1H), 3.43 (d, J = 5.8 Hz, 1H), 3.21 (s, 4H), 3.00 (d, J = 12.8 Hz, 1H), 2.31 (s, 3H), 1.83 (s, 1H), 1.58 (s, 1H), 1.43 (d, J = 6.3 Hz, 3H). LC- MS: (ESI, m/z): 626.2 [M+H]+ [1560] Compounds in Table below were prepared following a similar experimental procedure (using appropriately substituted reagents) as described Example 83, Compound 235. Table 20.
Figure imgf000458_0002
[1561] Example 84 – Compound 239: 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-((3-fluorooxetan- 3-yl)methoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000458_0001
[1562] Step 1: Under nitrogen, to a solution of (3-fluorooxetan-3-yl) methanol (0.24 mmol, 4.0 equiv.) in THF (1.5 mL) was added NaH (0.48 mmol, 8.0 eq, 60% dispersion in mineral oil) at 0 oC. The mixture was stirred at 25 oC for 0.5 hr. Then tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4- methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-12- (methylsulfonyl)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalene-14-carboxylate (0.060 mmol, 1.0 equiv.) was added and the reaction mixture was stirred at 25 oC for overnight. After that, the reaction was quenched with sat. ammonium chloride, extracted with iPrOAc. The combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum. The resulting solid was used as is for the next deprotection step. [1563] Step 2: To a solution of tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4- fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((3-fluorooxetan-3-yl)methoxy)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate in TFA (0.5 mL). The reaction mixture was stirred at RT for 1 hr. After completion, the solvent was removed under vacuum. The resulting residue was diluted with DCM and adjusted pH to 7.0 with sat. NaHCO3 solution. The resulting solution was extracted with DCM. The organic layer was washed with brine, dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was purified by prep-HPLC with C18 column eluting with water/MeCN to afford 2- fluoro-5-((5S,5aS,6S,9R)-1-fluoro-12-((3-fluorooxetan-3-yl)methoxy)-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl- 4-(trifluoromethyl)aniline (5.7 mg, 22% yield). 1H NMR (400 MHz, DMSO) δ 6.61 and 6.48 (br, 1H), 6.01 (s, 2H), 5.09 (d, J = 12.6 Hz, 1H), 4.82 (s, 1H), 4.76 (s, 2H), 4.74 (d, J = 8.2 Hz, 1H), 4.71 (d, J = 3.4 Hz, 2H), 4.53 (dt, J = 12.7, 6.4 Hz, 1H), 3.96 (d, J = 8.6 Hz, 1H), 3.56 (s, 1H), 3.45 (d, J = 6.0 Hz, 1H), 3.03 (d, J = 12.7 Hz, 1H), 2.32 (s, 3H), 1.78 (d, J = 11.2 Hz, 1H), 1.64 (s, 3H), 1.55 (dd, J = 12.5, 6.4 Hz, 1H), 1.44 (d, J = 6.3 Hz, 3H). LC-MS: (ESI, m/z): 597.2 [M+H]+ [1564] Compound in Table below was prepared following a similar experimental procedure (using appropriately substituted reagents) as described Example 84, Compound 239. Table 21.
Figure imgf000459_0001
[1565] Examples 85-102 – Compounds 241-262 [1566] General Procedure A: [1567] To a vial equipped with a magnetic stirring rod was added intermediate 5 (1 equiv) and dissolved in THF (~1 mL per 0.05 mmol of intermediate 5). To this solution was added DIEA (10 equiv) and corresponding amine (2-3 equiv). The reaction mixture was allowed to stir at room temperature for 15-20 h. After this time, the reaction mixture was concentrated under reduced pressure. Purification by flash silica gel chromatography was achieved according to each compound as described below. [1568] General Procedure B:
Figure imgf000460_0001
[1569] To a vial equipped with a magnetic stirring rod was added the corresponding Boc-protected amine (2-3 equiv) and dissolved in DCM (~1 mL per 0.2 mmol of Boc-protected amine) and treated with TFA (~0.5 mL per 0.2 mmol of Boc-protected amine). The reaction mixture was allowed to stir at room temperature for 2 h. After this time, the reaction mixture was concentrated under reduced pressure. The mixture was then diluted with DCM (1 mL) and concentrated again under reduced pressure. This was repeated two more times and then the crude residue was dried further under vacuum for 1 h. To this crude material was added intermediate 5 (1 equiv) and then the mixture was dissolved in THF (~1 mL per 0.05 mmol of intermediate 5) and then treated with DIEA (10 equiv). The reaction mixture was allowed to stir at room temperature for 15-20 h. After this time, the reaction mixture was concentrated under reduced pressure. Purification by flash silica gel chromatography was achieved according to each compound as described below. [1570] General Procedure C: [1571] To a dry vial equipped with a magnetic stirring rod was added corresponding alcohol (3 equiv) and dissolved in THF (~2 mL per 0.2 mmol alcohol). This solution was cooled to 0 °C and then sodium hydride (4 equiv, 60% in mineral oil) was added. The reaction mixture was allowed to stir at 0 °C for 30 min and then intermediate 5 (1 equiv) was added and the reaction mixture was allowed to warm to room temperature and stir for 1 h. After this time, the reaction mixture was diluted with water (10 mL), brine (10 mL) and DCM (10 mL). The aqueous layer was separated from the organics and washed with DCM (2 x 10 mL). The combined organic fractions were dried over magnesium sulfate, filtered, and concentrated under reduced pressure. Purification by flash silica gel chromatography was achieved according to each compound as described below. [1572] General Procedure D:
Figure imgf000461_0001
[1573] To a vial equipped with a magnetic stirring rod was added the corresponding intermediates generated from general procedures A-C (1 equiv) and then dissolved in TFA (1 mL per 0.05 – 0.1 mmol substrate) and then the mixture was allowed to stir at room temperature for 0.5 – 1 h. After this time, the reaction mixture was concentrated under reduced pressure. The reaction mixture was diluted with DCM (10 mL) and 1 M aq NaOH (10 mL). The aqueous layer was separated from the organics and washed with DCM (2 x 10 mL). The combined organic fractions were dried over magnesium sulfate, filtered, and concentrated under reduced pressure. Purification was achieved by HPLC or SFC according to each compound as described below. [1574] Example 85 – Compound 241 & 242: (1S,2S)-2-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)cyclopentan-1-ol and (1R,2R)-2-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-12-yl)oxy)cyclopentan-1-ol
Figure imgf000462_0001
[1575] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(((1S,2S)-2-hydroxycyclopentyl)oxy)-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate and tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(((1R,2R)-2-hydroxycyclopentyl)oxy)-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1576] Prepared by General Procedure C using rac-(1S,2S)-cyclopentane-1,2-diol (33.6 mg, 0.329 mmol, 3 equiv) and intermediate 5 (100 mg, 0.110 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) to afford a mixture of the two title products (86.4 mg, 0.0926 mmol, 84.4% yield). LCMS (ESI): [M+1]+ =933.3. [1577] Step 2: (1S,2S)-2-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)cyclopentan-1-ol & (1R,2R)-2- (((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen- 12-yl)oxy)cyclopentan-1-ol. [1578] Prepared by General Procedure D using 86.4 mg (0.0926 mmol, 1 equiv) of above intermediate. Purification by chiral SFC (Chiralpak IK 150 x 21.2 mm 5 µm column, 40 ^C, isocratic 70% carbon dioxide, 30% methanol with 0.1% ammonium hydroxide additive, 70 mL/min flow rate, 290 nm detection wavelength, 10 min run) afforded Compound 241 (2.3 mg, 0.0039 mmol, 4.2% yield, TR = 0.86 min) and Compound 242 (4.1 mg, 0.0069 mmol, 7.5% yield, TR = 1.06 min). The absolute configuration of each isomer was not determined. [1579] Compound 241: LCMS (ESI): [M+1]+ = 591.1. [1580] Compound 242: 1H NMR (DMSO-d6, 400 MHz): ^^ 6.65 – 6.39 (m, 1H), 6.01 (s, 2H), 5.13 – 5.03 (m, 2H), 4.95 (d, J = 3.8 Hz, 1H), 4.59 – 4.48 (m, 1H), 4.12 (s, 1H), 3.95 (d, J = 8.7 Hz, 1H), 3.56 (s, 1H), 3.45 (d, J = 6.2 Hz, 1H), 3.02 (d, J = 12.8 Hz, 1H), 2.32 (s, 3H), 2.17 (s, 1H), 1.95 – 1.77 (m, 2H), 1.76 – 1.49 (m, 6H), 1.43 (d, J = 6.3 Hz, 3H); LCMS (ESI): [M+1]+ = 591.1. [1581] Example 86 – Compound 243: 6-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-2-thia-6-azaspiro[3.3]heptane 2,2-dioxide
Figure imgf000463_0001
[1582] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-(2,2-dioxido-2-thia-6-azaspiro[3.3]heptan-6-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1583] Prepared by General Procedure B using tert-butyl 2-thia-6-azaspiro[3.3]heptane-6- carboxylate 2,2-dioxide (54.3 mg, 0.220 mmol, 2.5 equiv) and intermediate 5 (80.0 mg, 0.0878 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) to afford the title product (84.8 mg, 0.0867 mmol, 98.7% yield). LCMS (ESI): [M+1]+ = 978.3 [1584] Step 2: 6-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-2-thia-6-azaspiro[3.3]heptane 2,2-dioxide [1585] Prepared by General Procedure D using 84.8 mg (0.0867 mmol, 1 equiv) of above intermediate. Purification by prep HPLC (XSelect CSH Prep C1850 x 30 mm 5 µm column, gradient 20% to 60% of 0.1% aqueous ammonium hydroxide in acetonitrile, 60 mL/min flow rate, 10 min run time, 254 nm detection wavelength) afforded Compound 243 (10.8 mg, 0.0169 mmol, 19.5% yield). 1H NMR (400 MHz, DMSO) δ 6.62 – 6.38 (m, 1H), 5.98 (s, 2H), 5.09 (dd, J = 12.8, 2.6 Hz, 1H), 4.50 (s, 3H), 4.38 (s, 1H), 4.33 (s, 4H), 3.89 (d, J = 9.1 Hz, 1H), 3.51 (d, J = 5.7 Hz, 1H), 3.39 (d, J = 5.4 Hz, 1H), 2.94 (d, J = 12.7 Hz, 1H), 2.30 (s, 3H), 1.91 (s, 1H), 1.68 – 1.48 (m, 3H), 1.41 (d, J = 6.3 Hz, 3H); LCMS (ESI): [M+1]+ = 638.1. [1586] Example 87 – Compound 244: 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-((1- (methylsulfonyl)cyclobutyl)methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000464_0001
[1587] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-((1-(methylsulfonyl)cyclobutyl)methoxy)- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1588] Prepared by General Procedure C using (1-methylsulfonylcyclobutyl)methanol (54.1 mg, 0.329 mmol, 3.0 equiv) and intermediate 5 (100 mg, 0.110 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) to afford the title product (120 mg, 0.120 mmol, 109% yield). LCMS (ESI): [M+1]+ = 995.3 [1589] Step 2: 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-((1- (methylsulfonyl)cyclobutyl)methoxy)-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza- 6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline [1590] Prepared by General Procedure D using 120 mg (0.120 mmol, 1 equiv) of above intermediate. Purification by prep HPLC (Gemini-NX C18100 x 30 mm 5 µm column, gradient 5% to 85% of 0.1% aqueous ammonium hydroxide in acetonitrile, 60 mL/min flow rate, 10 min run time, 254 nm detection wavelength) afforded Compound 244 (39.3 mg, 0.0600 mmol, 50.0% yield). 1H NMR (400 MHz, DMSO) δ 6.68 – 6.38 (m, 1H), 6.02 (s, 2H), 5.10 (dd, J = 13.0, 2.5 Hz, 1H), 4.80 (d, J = 3.7 Hz, 2H), 4.54 (dt, J = 12.9, 6.4 Hz, 1H), 3.97 (d, J = 8.6 Hz, 1H), 3.59 – 3.52 (m, 1H), 3.45 (d, J = 6.1 Hz, 1H), 3.04 (d, J = 12.7 Hz, 1H), 3.00 (s, 2H), 2.75 (s, 1H), 2.67 – 2.55 (m, 2H), 2.32 (s, 3H), 2.23 – 2.10 (m, 3H), 2.07 (s, 2H), 2.02 – 1.91 (m, 1H), 1.78 (d, J = 11.1 Hz, 1H), 1.72 – 1.74 (m, 3H), 1.44 (d, J = 6.3 Hz, 3H); LCMS (ESI): [M+1]+ = 655.1. [1591] Example 88 – Compound 245: 3-(1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)azetidin-3-yl)thietane 1,1-dioxide
Figure imgf000465_0001
[1592] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-(3-(1,1-dioxidothietan-3-yl)azetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1593] Prepared by General Procedure A using 3-(azetidin-3-yl)thietane 1,1-dioxide (31.0 mg, 0.129 mmol, 2.5 equiv) and intermediate 5 (70.0 mg, 0.0768 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) to afford the title product (75.2 mg, 0.0758 mmol, 98.6% yield). LCMS (ESI): [M+1]+ = 992.3 [1594] Step 2: 3-(1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)azetidin-3-yl)thietane 1,1-dioxide [1595] Prepared by General Procedure D using 75.2 mg (0.0758 mmol, 1 equiv) of above intermediate. Purification by prep HPLC (Gemini-NX C1850 x 30 mm 5 µm column, gradient 20% to 60% of 0.1% aqueous ammonium hydroxide in acetonitrile, 60 mL/min flow rate, 10 min run time, 265 nm detection wavelength) afforded Compound 245 (22.7 mg, 0.0348 mmol, 46.0% yield). 1H NMR (400 MHz, DMSO) δ 6.65 – 6.35 (m, 1H), 5.97 (s, 2H), 5.08 (d, J = 11.1 Hz, 1 H), 4.42 – 4.25 (m, 3 H), 4.24 – 4.10 (m, 2H), 4.00 – 3.84 (m, 3H), 3.76 (s, 1H), 3.48 (d, J = 5.1, 1H), 3.38 (d, J = 5.6 Hz, 1H), 3.04 – 2.83 (m, 3H), 2.70 (s, 3H), 1.89 (s, 1H), 1.67 – 1.47 (m, 3H), 1.41 (d, J = 6.3, 3H); LCMS (ESI): [M+1]+ = 652.1. [1596] Example 89 – Compound 246 & 247: (1R,2S)-2-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)-2-methylcyclobutan-1-ol & (1S,2R)-2-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-12-yl)oxy)-2-methylcyclobutan-1-ol
Figure imgf000466_0001
[1597] Step 1: rac-(1S,2R)-2-(benzyloxy)-1-methylcyclobutan-1-ol and rac-(1S,2S)-2-(benzyloxy)- 1-methylcyclobutan-1-ol [1598] To a dry 100 mL round-bottom flask equipped with a magnetic stirring rod was added 2- benzyloxycyclobutanone (500.0 mg, 2.837 mmol, 1 equiv) and dissolved in THF (15 mL). The solution was cooled to 0°C and then methylmagnesium bromide solution (3.0 M in Et2O, 1.0 mL, 3.689 mmol, 1.3 equiv) was added dropwise via syringe. The reaction mixture was allowed to warm to room temperature and stir for 1 h. After this time, the reaction mixture was quenched with water (2 mL). The mixture was then diluted with water (100 mL) and Et2O (50 mL). The aqueous layer was separated from the organics and washed with Et2O (2 x 50 mL). The combined organic fractions were dried over magnesium sulfate, filtered, and concentrated under reduced pressure. Purification by flash silica gel chromatography (0 to 50% i-PrOAc in heptane) afforded rac-(1S,2R)- 2-benzyloxy-1-methyl-cyclobutanol (220.5 mg, 1.147 mmol, 40.4% yield) and rac-(1S,2S)-2- benzyloxy-1-methyl-cyclobutanol (168.4 mg, 0.8759 mmol, 30.9% yield) as colorless oils. [1599] Isomer 1 (syn): 1H NMR (400 MHz, CDCl3) δ 7.40 – 7.29 (m, 5H), 4.57 (d, J = 11.8 Hz, 1H), 4.53 (d, J = 11.8 Hz, 1H), 3.80 (m, 1H), 3.07 (s, 1H), 2.04 – 1.87 (m, 3H), 1.80 – 1.68 (m, 1H), 1.31 (s, 3H). [1600] Isomer 2 (anti) 1H NMR (400 MHz, CDCl3) δ 7.38 – 7.27 (m, 5H), 4.57 (d, J = 12 Hz, 1H), 4.53 (d, J = 12 Hz, 1H), 3.87 (t, J = 8.8 Hz, 1H), 2.03 – 1.93 (m, 1H), 1.78 (t, J = 10.3 Hz, 1H), 1.53 (q, J = 10.6 Hz, 1H), 1.43 (q, J = 9.6 Hz, 1H), 1.36 (s, 3H). [1601] Step 2: tert-butyl (5S,5aS,6S,9R)-12-((1S,2R)-2-(benzyloxy)-1-methylcyclobutoxy)-2-(5- (bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate and tert-butyl (5S,5aS,6S,9R)-12-((1R,2S)-2-(benzyloxy)-1-methylcyclobutoxy)-2- (5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1602] Prepared by General Procedure C using rac-(1S,2R)-2-(benzyloxy)-1-methylcyclobutan- 1-ol (63.3 mg, 0.329 mmol, 3 equiv) and intermediate 5 (100 mg, 0.110 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) to afford a mixture of the two title products (85.6 mg, 0.0837 mmol, 76.2% yield). LCMS (ESI): [M+1]+ =939.4. [1603] Step 3: tert-butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)- 1-fluoro-12-((1S,2R)-2-hydroxy-1-methylcyclobutoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4- oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate and tert-butyl (5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-12-((1R,2S)-2- hydroxy-1-methylcyclobutoxy)-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1604] To a 20 mL vial equipped with a magnetic stirring rod was added the mixture of two isomers of product from the previous step above (142 mg, 0.138 mmol, 1 equiv) and 10% Pd/C (14.7 mg, 0.0138 mmol, 10 mol%). The mixture was dissolved in EtOH (7 mL) and then the reaction mixture was spared with hydrogen from a balloon for 10 min and then allowed to stir at room temperature under 1 atm of hydrogen for 18 h. After this time, the reaction mixture was filtered through a pad of celite eluting with DCM (50 mL) and concentrated under reduced pressure. Purification by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) afforded a mixture of the title products (86.1 mg, 0.124 mmol, 89.9% yield) as a white solid. LCMS (ESI): [M+1]+ = 693.2. [1605] Step 4: tert-butyl (1R,2S)-2-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)-2-methylcyclobutan-1-ol and (1S,2R)-2- (((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen- 12-yl)oxy)-2-methylcyclobutan-1-ol [1606] To a 20 mL vial equipped with a magnetic stirring rod was added the product from the previous step above as a mixture of isomers (86.1 mg, 0.124 mmol, 1 equiv) and then dissolved in DCM (3 mL) and then treated with TFA (1.5 mL). The mixture was allowed to stir at 23 °C for 2 h. After this time, the reaction mixture was concentrated under reduced pressure. The crude reaction mixture was then partitioned between DCM (10 mL) and 1 M aq NaOH (10 mL). The aqueous layer was separated from the organics and washed with DCM (2 x 10 mL). The combined organic fractions were dried over magnesium sulfate, filtered, and concentrated under reduced pressure. Purification by chiral SFC (Whelko-01250 x 21.2 mm 5 µm column, 40 ^C, isocratic 70% carbon dioxide, 30% ethanol with 0.1% ammonium hydroxide additive, 70 mL/min flow rate, 240 nm detection wavelength, 7 min run) afforded Compound 246 (12.0 mg, 0.0203 mmol, 16.3% yield, TR = 1.93 min) and Compound 247 (7.7 mg, 0.0130 mmol, 10.5% yield, TR = 2.03 min). The absolute configuration of each isomer was not confirmed. [1607] Compound 246: 1H NMR (400 MHz, DMSO) δ 6.68 – 6.38 (m, 1H), 6.00 (s, 2H), 5.10 (d, J = 13.0 Hz, 1 H), 5.05 – 4.80 (m, 2H), 4.52 (dt, J = 15.0, 6.0 Hz, 1H), 3.93 (d, J = 8.8 Hz, 1H), 3.55 (d, J = 4.7 Hz, 1H), 3.44 (d, J = 5.6 Hz, 1H), 3.01 (d, J = 12.0 Hz, 1H), 2.32 (s, 3H), 2.23 – 2.03 (m, 2H), 1.90 (td, J = 10.8, 4.9 Hz, 1 H), 1.85 – 1.69 (m, 2H), 1.69 – 1.48 (m, 3H), 1.43 (d, J = 5.9 Hz, 1H), 1.34 (s, 3H); LCMS (ESI): [M+1]+ = 593.1. [1608] Compound 247: 1H NMR (400 MHz, DMSO) δ 6.68 – 6.38 (m, 1H), 60.1 (s, 2H), 5.12 (dd, J = 12.8, 2.1 Hz, 1H), 5.03 – 4.90 (m, 2H), 4.50 (dt, J = 14.9, 6.0 Hz, 1H), 3.94 (d, J = 8.5 Hz, 1H), 3.54 (d, J = 5.2 Hz, 1H), 3.44 (d, J = 5.8 Hz, 1H), 3.01 (d, J = 12.5 Hz, 1H), 2.31 (s, 3H), 2.23 – 2.13 (m, 1H), 2.12 – 2.01 (m, 1H), 1.98 – 1.87 (m, 1H), 1.86 – 1.71 (m, 2H), 1.70 – 1.50 (m, 3H), 1.43 (d, J = 6.2 Hz, 3H), 1.34 (s, 3H); LCMS (ESI): [M+1]+ = 593.1. [1609] Example 90 – Compound 248: ((2S,3S)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-3-methylazetidin-2-yl)methanol
[1610] Step 1: tert-butyl (2S,3S)-2-(hydroxymethyl)-3-methylazetidine-1-carboxylate [1611] To a dry 2-dram vial equipped with a magnetic stirring rod was added (2S,3S)-1-tert- butoxycarbonyl-3-methyl-azetidine-2-carboxylic acid (150 mg, 0.697 mmol, 1 equiv) and dissolved in THF (3 mL) and cooled to 0 °C. To this solution was added borane dimethylsulfide complex (90 mass%, 0.30 mL, 2.93 mmol, 4.2 equiv) and then the reaction mixture was allowed to warm to room temperature and stir for 20 h. After this time, the reaction mixture was cooled to 0 °C and quenched with MeOH (0.5 mL) and then diluted with Et2O (20 mL) and washed with water (2 x 10 mL). The combined organic fractions were dried over magnesium sulfate, filtered, and concentrated under reduced pressure. Purification by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) afforded tert-butyl (2S,3S)-2-(hydroxymethyl)-3-methylazetidine-1-carboxylate (130 mg, 0.645 mmol, 92.6% yield) as a colorless oil. 1H NMR (400 MHz, CDCl3) δ 4.05 – 3.92 (m, 1H), 3.88 (t, J = 8.2 Hz, 1H), 3.77 – 3.65 (m, 2H), 3.51 – 3.38 (m, 1H), 2.29 (s, 1H), 1.45 (s, 9H), 1.18 (d, J = 6.9 Hz, 3H). [1612] Step 2: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((2S,3S)-2-(hydroxymethyl)-3-methylazetidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1613] Prepared by General Procedure B using tert-butyl (2S,3S)-2-(hydroxymethyl)-3- methylazetidine-1-carboxylate (41.1 mg, 0.204 mmol, 2.3 equiv) and intermediate 5 (80.0 mg, 0.0878 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i- PrOAc in heptane) to afford the title product (80.6 mg, 0.0865 mmol, 98.5% yield). LCMS (ESI): [M+1]+ = 932.3. [1614] Step 3: ((2S,3S)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-3-methylazetidin-2-yl)methanol [1615] Prepared by General Procedure D using 80.6 mg (0.0865 mmol, 1 equiv) of above intermediate. Purification by prep HPLC (XSelect CSH Prep C1850 x 30 mm 5 µm column, gradient 30% to 70% of 0.1% aqueous ammonium hydroxide in acetonitrile, 60 mL/min flow rate, 10 min run time, 254 nm detection wavelength) afforded Compound 248 (18.2 mg, 0.0308 mmol, 35.6% yield). 1H NMR (400 MHz, DMSO) δ 6.65 – 6.38 (m, 1H), 5.97 (s, 2H), 5.65 (s, 1H), 5.09 (d, J = 12.5 Hz, 1H), 4.39 (t, J = 6.1 Hz, 1H), 4.12 -3.92 (m, 2H), 3.92 – 3.83 (m, 1H), 3.78 (s, 1H), 3.71 (s, 2H), 3.61 – 3.42 (m, 2H), 3.39 (d, J = 5.9 Hz, 1H), 2.94 (d, J = 12.7 Hz, 1H), 2.73 (s, 1H), 2.30 (s, 3H), 1.98 – 1.74 (m, 1H), 1.68 – 1.46 (m, 3H), 1.41 (d, J = 6.2 Hz, 3H), 1.19 (d, J = 6.8 Hz, 3H). [1616] Example 91 – Compound 249: 2-((S)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)azetidin-2-yl)ethan-1-ol
Figure imgf000470_0001
[1617] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((S)-2-(2-hydroxyethyl)azetidin-1-yl)-5-methyl-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1618] Prepared by General Procedure B using tert-butyl (S)-2-(2-hydroxyethyl)azetidine-1- carboxylate (38.7 mg, 0.192 mmol, 2.5 equiv) and intermediate 5 (70.0 mg, 0.0768 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) to afford the title product (72.3 mg, 0.0776 mmol, 101% yield). LCMS (ESI): [M+1]+ = 932.3. [1619] Step 2: 2-((S)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)- 1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)azetidin-2-yl)ethan-1-ol [1620] Prepared by General Procedure D using 72.3 mg (0.0776 mmol, 1 equiv) of above intermediate. Purification by prep HPLC (Gemini-NX C18100 x 30 mm 5 µm column, gradient 20% to 60% of 0.1% aqueous ammonium hydroxide in acetonitrile, 60 mL/min flow rate, 20 min run time, 254 nm detection wavelength) afforded Compound 249 (22.5 mg, 0.0380 mmol, 49.0% yield). 1H NMR (400 MHz, DMSO) δ 1.63 – 1.69 (m, 1H), 5.97 (s, 2H), 5.12 (s, 1H), 4.49 (s, 2H), 4.40 (s, 1H), 3.99 (s, 2H), 3.88 (d, J = 8.9 Hz, 1H), 3.59 – 3.50 (m, 3H), 3.41 (d, J = 6.0 Hz, 1H), 2.95 (d, J = 12.7 Hz, 1H), 2.31 (s, 3H), 2.05 (s, 1H), 1.94 – 1.78 (m, 1H), 1.68 – 1.48 (m, 2H), 1.41 (d, J = 6.3 Hz, 3H); LCMS (ESI): [M+1]+ = 592.2. [1621] Example 92 – Compound 250: (1-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)cyclopropyl)methanol
Figure imgf000471_0001
[1622] Step 1: 1-(((tert-butyldimethylsilyl)oxy)methyl)cyclopropan-1-ol [1623] To a 20 mL vial equipped with a magnetic stirring rod was added 1- (hydroxymethyl)cyclopropanol (100 mg, 1.14mmol, 1 equiv) and Imidazole (155 mg, 2.27 mmol, 2 equiv) and then these were dissolved in DCM (3 mL). To this solution was added tert- butyldimethylchlorosilane (194 mg, 1.25 mmol, 1.1 equiv) and then the resulting suspension was allowed to stir at room temperature for 20 h. After this time, the reaction mixture was filtered through a short plug of silica gel eluting with i-PrOAc (10 mL) and concentrated under reduced pressure. Purification by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) afforded 1-[[tert-butyl(dimethyl)silyl]oxymethyl]cyclopropanol (109 mg, 0.538 mmol, 47.4% yield) as a colorless oil. 1H NMR (400 MHz, CDCl3) δ 3.63 (s, 2H), 2.63 (s, 1H), 0.92 (s, 9 H), 0.80 (dd, J = 7.0, 5.4, 2H), 0.51 (dd, J = 6.8, 5.3, 2H), 0.08 (s, 6H). [1624] Step 2: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-(1-(((tert-butyldimethylsilyl)oxy)methyl)cyclopropoxy)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate [1625] Prepared by General Procedure C using 1-(((tert- butyldimethylsilyl)oxy)methyl)cyclopropan-1-ol (40.0 mg, 0.198 mmol, 3.0 equiv) and intermediate 5 (60.0 mg, 0.0659 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) to afford the title product (55.0 mg, 0.0532 mmol, 80.8% yield). LCMS (ESI): [M+1]+ = 1033.4. [1626] Step 3: (1-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)cyclopropyl)methanol [1627] Prepared by General Procedure D using 55.0mg (0.0532 mmol, 1 equiv) of above intermediate. Purification by prep HPLC (XSelect CSH Prep C18100 x 30 mm 5 µm column, gradient 5% to 50% of 0.1% aqueous ammonium hydroxide in acetonitrile, 60 mL/min flow rate, 20 min run time, 243 nm detection wavelength) afforded Compound 250 (13.2 mg, 0.0228 mmol, 42.9% yield). 1H NMR (400 MHz, DMSO) δ 6.69 – 6.39 (m, 1H), 6.04 (s, 2H), 5.10 (dd, J = 12.9, 2.6 Hz, 1H), 5.00 (s, 1H), 4.55 (dt, J = 15.0, 6.1 Hz, 1H), 3.96 (d, J = 8.7 Hz, 1H), 3.82 (s, 2H), 3.55 (d, J = 5.6 Hz, 1H), 3.45 (d, J = 6.2 Hz, 1H), 3.04 (d, J = 12.6 Hz, 1H), 2.32 (s, 3H), 1.85 – 1.74 (m, 1H), 1.72 – 1.48 (m, 3H0, 1.44 (d, J = 6.3 Hz, 3H), 0.94 – 0.88 (m, 4H); LCMS (ESI): [M+1]+ = 579.2. [1628] Example 93 – Compound 251: ((2R,3S)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-3-fluoroazetidin-2-yl)methanol
[1629] Step 1: tert-butyl (2S)-2-[[tert-butyl(dimethyl)silyl]oxymethyl]azetidine-1-carboxylate [1630] To a dry 100 mL round-bottom flask equipped with a magnetic stirring rod was added tert- butyl (2S)-2-(hydroxymethyl)azetidine-1-carboxylate (2.03 g, 10.8 mmol) and imidazole (1.77 g, 26.0 mmol) and then dissolved in DCM (35 mL). To this solution was added tert- butyldimethylchlorosilane (3.35 g, 21.6 mmol) and then the reaction mixture was allowed to stir at room temperature for 20 h. After this time, the reaction mixture was quenched with sat aq sodium bicarbonate (30 mL) and water (30 mL) and diluted with DCM (30 mL). The aqueous layer was separated from the organics and washed with DCM (2 x 30 mL). The combined organic fractions were dried over magnesium sulfate, filtered, and concentrated under reduced pressure. Purification by flash silica gel chromatography (0 to 30% i-PrOAc in heptane) afforded tert-butyl (2S)-2-[[tert- butyl(dimethyl)silyl]oxymethyl]azetidine-1-carboxylate (3.481 g, 11.55 mmol, 106% yield) as a colorless oil. 1H NMR (400 MHz, CDCl3) δ 4.21 (s, 1H), 3.92 (br s, 1H), 3.77 (t, J = 8.0 Hz, 2H), 3.65 (d, J = 10.9 Hz, 1H), 2.17 (q, J = 7.4 Hz), 1.43 (s, 9H), 0.90 (s, 9H), 0.06 (s, 6 H). [1631] Step 2: tert-butyl (2R,3S)-2-[[tert-butyl(dimethyl)silyl]oxymethyl]-3-hydroxy-azetidine-1- carboxylate [1632] To a dry 2-dram vial equipped with a stir bar was added bis(1,5- cyclooctadiene)dimethoxydiiridium (113 mg, 0.167 mmol), 2-methyl-1,10-phenanthroline (67.6 mg, 0.331 mmol), tert-butyl (2S)-2-[[tert-butyl(dimethyl)silyl]oxymethyl]azetidine-1-carboxylate (1.10 mL, 3.23 mmol), and bis(pinacolato)diboron (2.74 g, 10.5 mmol). To this mixture was added freshly degassed cyclooctane (5 mL). The reaction mixture was allowed to stir at 100 °C for 64 h. After this time, the reaction mixture was allowed to cool to room temperature and then diluted with Et2O (30 mL) and cooled to 0 °C and treated dropwise with 1:1 v/v 15% aq NaOH and 30% aq H2O2 (40 mL) and then the mixture was allowed to stir at 0 °C for 0.5 h. After this time, the reaction mixture was diluted with water (50 mL), brine, (50 mL), sodium thiosulfate (50 mL) and Et2O (50 mL). The aqueous layer was separated from the organics and washed with Et2O (2 x 30 mL). The combined organic fractions were dried over magnesium sulfate, filtered, and concentrated under reduced pressure. Purification by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) afforded tert-butyl (2R,3S)-2-[[tert-butyl(dimethyl)silyl]oxymethyl]-3-hydroxy-azetidine-1-carboxylate (539 mg, 1.70 mmol, 52.6% yield) as a pale yellow oil. 1H NMR (400 MHz, CDCl3) δ 4.53 – 4.44 (m, 1H), 3.99 (t, J = 8.1 Hz, 2H), 3.93 – 3.84 (m, 1H), 3.80 (d, J = 11 Hz, 1H), 3.65 (dd, J = , 9.4, 4.1 Hz, 1H), 2.10 (d, J = 6.0 Hz, 1H), 1.43 (s, 9H), 0.89 (s, 9H), 0.06 (s, 6H); LCMS (ESI): [M+1]+ = 317.9 [1633] Step 3: tert-butyl (R)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3-oxoazetidine-1- carboxylate [1634] To a dry 20 mL scintillation vial equipped with a magnetic stirring rod was added tert-butyl (2R,3S)-2-[[tert-butyl(dimethyl)silyl]oxymethyl]-3-hydroxy-azetidine-1-carboxylate (180 mg, 0.567 mmol, 1 equiv) and dissolved in DCM (5 mL) and then treated with DMP (381 mg, 0.898 mmol, 1.6 equiv) and then the reaction mixture was allowed to stir at 23 °C for 5 h. After this time, the reaction mixture was diluted with Et2O (20 mL), 10% aq sodium thiosulfate (20 mL) and water (20 mL). The aqueous layer was separated from the organics and washed sat aq sodium bicarbonate (20 mL) and then the combined aq layers were back extracted with Et2O (2 x 20 mL). The combined organic fractions were dried over magnesium sulfate, filtered, and concentrated under reduced pressure. Purification by flash silica gel chromatography (0 to 50% i-PrOAc in heptane) afforded tert-butyl (2R)-2-[[tert-butyl(dimethyl)silyl]oxymethyl]-3-oxo-azetidine-1-carboxylate (161 mg, 0.510 mmol, 90.0% yield) as a colorless oil. 1H NMR (400 MHz, CDCl3) δ 4.84 (s, 1H), 4.60 – 4.48 (m, 2H), 4.10 (d, J = 10.7 Hz), 3.89 (dd, J = 11.3, 1.6 Hz, 1H), 1.49 (s, 9 H), 0.87 (s, 9 H), 0.05 (d, J = 7.1 Hz, 6 H). [1635] Step 4: tert-butyl (2R,3R)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3-hydroxyazetidine-1- carboxylate [1636] To a 20 mL vial equipped with a magnetic stirring rod was added tert-butyl (2R)-2-[[tert- butyl(dimethyl)silyl]oxymethyl]-3-oxo-azetidine-1-carboxylate (158 mg, 0.501 mmol, 1 equiv) and dissolved in MeOH (3 mL, 74.2 mmol, 100 mass%) and then the mixture was cooled to 0 °C and then NaBH4 (56.8 mg, 1.50 mmol, 3 equiv) was added. The reaction mixture was allowed to stir at 0 °C for 1 h and then allowed to warm to room temperature and stir for 30 min. After this time, the reaction mixture was partitioned between 50:50 water/brine (20 mL) and Et2O (20 mL). The aqueous layer was separated from organics and washed with Et2O (2 x 20 mL). The combined organic fractions were dried over magnesium sulfate, filtered, and concentrated under reduced pressure. Purification by flash silica gel chromatography (0 to 60% i-PrOAc in heptane) afforded tert-butyl (2R,3R)-2-[[tert-butyl(dimethyl)silyl]oxymethyl]-3-hydroxy-azetidine-1-carboxylate (146.6 mg, 0.462 mmol, 92.2% Yield) as a colorless oil. Isolated product was >20:1 dr as the depicted stereoisomer. 1H NMR (400 MHz, CDCl3) δ 4.66 – 4.55 (m, 1H), 4.38 – 4.06 (m, 4H), 3.98 (d, J = 10.4 Hz, 1H), 3.77 – 3.67 (m, 1H), 1.44 (s, 9H), 0.93 (s, 9H), 0.12 (d, J = 1.9 Hz, 6H). [1637] Step 5: tert-butyl (2R,3R)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3- (((trifluoromethyl)sulfonyl)oxy)azetidine-1-carboxylate [1638] To a dry 2-dram vial equipped with a magnetic stirring rod was added tert-butyl (2R,3R)-2- [[tert-butyl(dimethyl)silyl]oxymethyl]-3-hydroxy-azetidine-1-carboxylate (144 mg, 0.454 mmol, 1 equiv) and dissolved in DCM (1.5 mL) and then 2,6-lutidine (0.10 mL, 0.91 mmol, 2 equiv) was added to this solution. This solution was then cooled to -40 °C (dry ice / MeCN bath) and then treated dropwise with trifluoromethanesulfonic anhydride (92 µL, 0.54 mmol, 1.2 equiv). The solution was allowed to stir at -40 °C for 1 h. After this time, the reaction mixture was diluted with Et2O (20 mL) and then washed with 1 M aq HCl (2 x 10 mL) and water (10 mL). The combined organic fractions were dried over magnesium sulfate, filtered, and concentrated under reduced pressure. Purification by flash silica gel chromatography (0 to 50% i-PrOAc in heptane) afforded tert-butyl (2R,3R)-2-[[tert-butyl(dimethyl)silyl]oxymethyl]-3-(trifluoromethylsulfonyloxy)- azetidine-1-carboxylate (122 mg, 0.271 mmol, 59.7% yield) as a colorless oil. 1H NMR (400 MHz, CDCl3) δ 5.48 (ddd, J = 11.6, 6.9, 4.9 Hz, 1H), 4.89 – 4.42 (m, 1H), 4.22 (dd, J = 10.2, 7.2 Hz, 1H), 4.15 – 4.06 (m, 2H), 1.44 (s, 9 H), 0.91 (s, 9 H), 0.08 (d, J = 3.1 Hz, 6 H). [1639] Step 6: tert-butyl (2R,3S)-3-fluoro-2-(hydroxymethyl)azetidine-1-carboxylate [1640] To a dry 2-dram vial equipped with a magnetic stirring rod was added tert-butyl (2R,3R)-2- [[tert-butyl(dimethyl)silyl]oxymethyl]-3-(trifluoromethylsulfonyloxy)azetidine-1-carboxylate (161 mg, 0.358 mmol, 1 equiv) and then dissolved in THF (1 mL). This solution was cooled to 0 °C and then TBAF (1 M in THF, 1.0 mL, 1.0 mmol, 2.8 equiv) was added and then the reaction mixture was allowed to warm to room temperature and stir for 2.5 h. After this time, the reaction mixture was filtered through a plug of silica gel eluting with i-PrOAc (10 mL) and then concentrated under reduced pressure. Purification by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) afforded tert-butyl (2R,3S)-3-fluoro-2-(hydroxymethyl)azetidine-1-carboxylate (54.1 mg, 0.264 mmol, 73.6% yield) as a colorless oil. 1H NMR (400 MHz, CDCl3) δ 5.12 – 4.87 (m, 1H), 4.43 (d, J = 22.2 Hz, 1H), 4.11 – 3.87 (m, 3H), 3.76 (ddd, J = 11.9, 6.1, 4.8 Hz, 1H), 1.46 (s, 9 H); 19F NMR (376 MHz, CDCl3) δ -184.1. [1641] Step 7: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((2R,3S)-3-fluoro-2-(hydroxymethyl)azetidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1642] Prepared by General Procedure B using tert-butyl (2R,3S)-3-fluoro-2- (hydroxymethyl)azetidine-1-carboxylate (27.9 mg, 0.136 mmol, 2.0 equiv) and intermediate 5 (62.0 mg, 0.0681 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i- PrOAc in heptane) to afford the title product (62.2 mg, 0.0665 mmol, 97.6% yield). LCMS (ESI): [M+1]+ = 936.2. [1643] Step 8: ((2R,3S)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-3-fluoroazetidin-2-yl)methanol [1644] Prepared by General Procedure D using 62.2 mg (0.0665 mmol, 1 equiv) of above intermediate. Purification by prep HPLC (XSelect CSH Prep C1850 x 30 mm 5 µm column, gradient 5% to 85% of 0.1% aqueous ammonium hydroxide in acetonitrile, 60 mL/min flow rate, 10 min run time, 263 nm detection wavelength) afforded Compound 251 (22.7 mg, 0.0381 mmol, 57.3% yield). 1H NMR (400 MHz, DMSO) δ 6.63 – 6.39 (m, 1H), 5.97 (s, 2H), 5.42 – 5.21 (m, 1H), 5.10 (d, J = 12.4, 1H), 4.51 – 4.24 (m, 3H), 4.00 (dd, J = 25.8, 10.5 Hz, 1H), 3.90 (d, J = 8.9 Hz, 1H), 3.85 (s, 1H), 3.51 (d, J = 5.7 Hz, 1H), 3.41 (d, J = 6.0 Hz, 1H), 2.96 (d, J = 12.8 Hz, 1H), 2.54 (s, 4H), 2.31 (s, 3H), 1.85 (s, 1H), 1.79 – 1.47 (m, 3H), 1.42 (d, J = 6.2 Hz, 3H); LCMS (ESI): [M+1]+ = 596.1. [1645] Example 94 – Compound 252 & 253: ((R)-4-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)morpholin-3-yl)methanol & ((S)-4-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen- 12-yl)morpholin-3-yl)methanol
[1646] Step 1: Prepared by General Procedure A using rac-morpholin-3-ylmethanol (30.9 mg, 0.263 mmol, 3.0 equiv) and intermediate 5 (80.0 mg, 0.0878 mmol, 1 equiv). The reaction was found to be sluggish at room temperature and so the reaction mixture was heated to 50 °C for 2 d, but otherwise the general procedure was the same. Product was purified by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) to afford the title product (48.0 mg, 0.0506 mmol, 57.7% yield). LCMS (ESI): [M+1]+ = 948.3. [1647] Step 2: Prepared by General Procedure D using 48.0 mg (0.0506 mmol, 1 equiv) of above intermediate. Purification by chiral SFC (Chiralpak IC 150 x 21.2 mm 5 µm column, 40 ^C, isocratic 60% carbon dioxide and 40% methanol with 0.1% ammonium hydroxide additive, 70 mL/min flow rate, 254 nm detection wavelength, 12 min run) afforded Compound 253 (3.9 mg, 0.00643 mmol, 12.7% yield, TR = 1.89 min) and Compound 252 (3.3 mg, 0.0054 mmol, 10.7% yield, TR = 1.17 min). The absolute configuration of each isomer was not confirmed. Compound 253: LCMS (ESI): [M+1]+ = 608.1. Compound 252: LCMS (ESI): [M+1]+ = 608.2. [1648] Example 95 – Compound 254: (1-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)oxy)cyclobutyl)methanol
[1649] Step 1: 1-(((tert-butyldimethylsilyl)oxy)methyl)cyclobutan-1-ol [1650] To a 20 mL vial equipped with a magnetic stirring rod was added 1- (hydroxymethyl)cyclobutanol (100 mg, 0.980 mmol, 1 equiv) and imidazole (133 mg, 1.96 mmol, 2 equiv) and then these were dissolved in DCM (3 mL). To this solution was added tert- butyldimethylchlorosilane (167 mg, 1.08 mmol, 1.1 equiv) and then the resulting suspension was allowed to stir at room temperature for 20 h. After this time, the reaction mixture was filtered through a short plug of silica gel eluting with i-PrOAc (10 mL) and concentrated under reduced pressure. Purification by flash silica gel chromatography (0 to 70% i-PrOAc in heptane) afforded 1- [[tert-butyl(dimethyl)silyl]oxymethyl]cyclobutanol (170 mg, 0.787 mmol, 80.3% yield) as a colorless oil. 1H NMR (400 MHz, CDCl3) δ 3.59 (s, 2H), 2.79 (s, 1H), 2.13 – 1.93 (m, 4H), 1.81 – 1.69 (m, 1H), 1.54 – 1.40 (m, 1H), 0.91 (s, 9H), 0.09 (s, 6H). [1651] Step 2: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-(1-(((tert-butyldimethylsilyl)oxy)methyl)cyclobutoxy)-1-fluoro-5- methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalene-14-carboxylate [1652] Prepared by General Procedure C using 1-(((tert- butyldimethylsilyl)oxy)methyl)cyclobutan-1-ol (63.0 mg, 0.291 mmol, 2.7 equiv) and intermediate 5 (99.0 mg, 0.109 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) to afford the title product (47.9 mg, 0.0457 mmol, 42.1% yield). LCMS (ESI): [M+1]+ = 1047.2. [1653] Step 3: (1-(((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)oxy)cyclobutyl)methanol [1654] Prepared by General Procedure D using 47.9 mg (0.0457 mmol, 1 equiv) of above intermediate. Purification by prep HPLC (XSelect CSH Prep C1850 x 30 mm 5 µm column, gradient 20% to 60% of 0.1% aqueous ammonium hydroxide in acetonitrile, 60 mL/min flow rate, 10 min run time, 254 nm detection wavelength) afforded Compound 254 (15.4 mg, 0.0260 mmol, 56.9% yield). 1H NMR (400 MHz, DMSO) δ 6.68 – 6.38 (m, 1H), 6.02 (s, 2H), 5.31 (s, 1H), 5.11 (dd, J = 12.9, 2.5 Hz, 1H), 4.54 (dq, J = 8.8, 6.4 Hz, 1H), 4.33 (d, J = 11.5 Hz, 1H), 4.29 (d, J = 11.5 Hz, 1H), 3.96 (d, J = 8.9 Hz, 1H), 3.57 (s, 1H), 3.47 (d, J = 6.1 Hz, 1H), 3.03 (d, J = 12.9 Hz, 1H), 2.54 (s, 2H), 2.32 (s, 4H), 2.16 – 2.06 (m, 2H), 2.01 (q, J = 9.5 Hz, 2H), 1.88 – 1.76 (m, 1H), 1.74 – 1.49 (m, 5H), 1.44 (d, J= 6.2 Hz, 3H); LCMS (ESI): [M+1]+ = 593.1. [1655] Example 96 – Compound 255: ((S)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)pyrrolidin-2-yl)methanol
Figure imgf000479_0001
[1656] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((S)-2-(hydroxymethyl)pyrrolidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1657] Prepared by General Procedure A using (S)-pyrrolidin-2-ylmethanol (16.7 mg, 0.165 mmol, 3.0 equiv) and intermediate 5 (50.0 mg, 0.0549 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) to afford the title product (48.7 mg, 0.0523 mmol, 95.2% yield). LCMS (ESI): [M+1]+ = 932.3. [1658] Step 2: ((S)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)pyrrolidin-2-yl)methanol [1659] Prepared by General Procedure D using 48.7 mg (0.0523 mmol, 1 equiv) of above intermediate. Purification by prep HPLC (XSelect CSH Prep C1850 x 30 mm 5 µm column, gradient 5% to 85% of 0.1% aqueous ammonium hydroxide in acetonitrile, 60 mL/min flow rate, 10 min run time, 254 nm detection wavelength) afforded Compound 255 (19.4 mg, 0.0328 mmol, 62.7% yield). 1H NMR (400 MHz, DMSO) δ 6.66 – 6.37 (m, 1 H), 5.95 (s, 2H), 5.13 (t, J = 11.9 Hz, 1H), 4.38 (s, 1H), 4.25 – 4.08 (m, 1H), 3.95 – 3.81 (m, 1H), 3.71 – 3.49 (m, 5H), 2.95 (d, J = 12.7 Hz, 1H), 2.31 (s, 3H), 2.10 – 1.79 (m, 5H), 1.70 – 1.47 (m, 3H), 1.41 (d, J = 6.1 Hz, 3H); LCMS (ESI): [M+1]+ = 592.2. [1660] Example 97 – Compound 256: 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12- morpholino-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8- ab]heptalen-2-yl)-3-methyl-4-(trifluoromethyl)aniline
Figure imgf000480_0001
[1661] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-12-morpholino-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene-14-carboxylate [1662] Prepared by General Procedure A using morpholine (14.2 µL, 14.3 mg, 0.165 mmol, 3.0 equiv) and intermediate 5 (50.0 mg, 0.0549 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) to afford the title product (48.5 mg, 0.0528 mmol, 96.3% yield). LCMS (ESI): [M+1]+ = 918.3. [1663] Step 2: 2-fluoro-5-((5S,5aS,6S,9R)-1-fluoro-5-methyl-12-morpholino-5a,6,7,8,9,10- hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-2-yl)-3-methyl- 4-(trifluoromethyl)aniline [1664] Prepared by General Procedure D using 48.5 mg (0.0528 mmol, 1 equiv) of above intermediate. Purification by prep HPLC (XSelect CSH Prep C1850 x 30 mm 5 µm column, gradient 5% to 85% of 0.1% aqueous ammonium hydroxide in acetonitrile, 60 mL/min flow rate, 10 min run time, 254 nm detection wavelength) afforded Compound 256 (21.1 mg, 0.0365 mmol, 69.2% yield). 1H NMR (400 MHz, DMSO) δ 6.65 – 6.36 (m, 1H), 5.97 (s, 2H), 5.02 (dd, J = 12.8, 2.3 Hz, 1H), 4.41 (dt, J = 15.0, 6.1 Hz, 1H), 3.89 (d, J = 8.9 Hz, 1H), 3.83-3.75 (m, 4H), 3.72 – 3.63 (m, 4H), 3.52 (d, J = 5.0 Hz, 1H), 3.41 (d, J = 5.9 Hz, 1H), 2.97 (d, J = 12.6 Hz, 1H), 2.31 (s, 3H), 1.91 – 1.79 (m, 1H), 1.69 – 1.49 (m, 3H), 1.42 (d, J = 6.3 Hz, 3H); LCMS (ESI): [M+1]+ = 578.2. [1665] Example 98 – Compound 257: ((R)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)pyrrolidin-3-yl)methanol
Figure imgf000481_0001
[1666] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((R)-3-(hydroxymethyl)pyrrolidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1667] Prepared by General Procedure A using (R)-pyrrolidin-3-ylmethanol (11.1 mg, 0.110 mmol, 2.0 equiv) and intermediate 5 (50.0 mg, 0.0549 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) to afford the title product (50.5 mg, 0.0542 mmol, 98.7% yield). LCMS (ESI): [M+1]+ = 932.3. [1668] Step 2: ((R)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)pyrrolidin-3-yl)methanol [1669] Prepared by General Procedure D using 50.5 mg (0.0542 mmol, 1 equiv) of above intermediate. Purification by prep HPLC (Triart C1850 x 30 mm 5 µm column, gradient 20% to 60% of 0.1% aqueous ammonium hydroxide in acetonitrile, 60 mL/min flow rate, 10 min run time, 265 nm detection wavelength) afforded Compound 257 (17.5 mg, 0.0296 mmol, 54.6% yield). 1H NMR (400 MHz, DMSO) δ 6.64 – 6.38 (m, 1H), 5.95 (s, 2H), 5.11 (dd, J = 12.7, 2.5 Hz, 1H), 4.72 (d, J = 4.8 Hz, 1H), 4.36 (d, J = 7.9 Hz, 1H), 3.88 (d, J = 9.1 Hz, 1H), 3.79 – 3.58 (m, 2H), 3.57 – 3.36 (m, 5H), 2.95 (d, J = 12.6 Hz, 1H), 2.70 (s, 1H), 2.39 (app p, J = 7.1 Hz, 1H), 2.31 (s, 3H), 2.06 – 1.89 (m, 2H), 1.78 – 1.48 (m, 4H),1.42 (d, J = 6.2 Hz, 3H); LCMS (ESI): [M+1]+ = 592.2. [1670] Example 99 – Compound 258: ((S)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)pyrrolidin-3-yl)methanol
Figure imgf000482_0001
[1671] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((S)-3-(hydroxymethyl)pyrrolidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1672] Prepared by General Procedure A using (S)-pyrrolidin-3-ylmethanol (11.1 mg, 0.110 mmol, 2.0 equiv) and intermediate 5 (50.0 mg, 0.0549 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i-PrOAc in heptane) to afford the title product (48.8 mg, 0.0524 mmol, 95.4% yield). LCMS (ESI): [M+1]+ = 932.3. [1673] Step 2: ((S)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)pyrrolidin-3-yl)methanol [1674] Prepared by General Procedure D using 48.8 mg (0.0524 mmol, 1 equiv) of above intermediate. Purification by prep HPLC (Triart C1850 x 30 mm 5 µm column, gradient 20% to 60% of 0.1% aqueous ammonium hydroxide in acetonitrile, 60 mL/min flow rate, 10 min run time, 263 nm detection wavelength) afforded Compound 258 (18.5 mg, 0.0313 mmol, 59.7% yield). 1H NMR (400 MHz, DMSO) δ 6.64 – 6.37 (m, 1H), 5.95 (s, 2H), 5.12 (d, J = 12.6 Hz, 1H), 4.75– 4.68 (m, 1H), 4.37 (t, J = 8.7 Hz, 1H), 3.88 (d, J = 9.1 Hz, 1H), 3.78 – 3.58 (m, 2H), 3.55 – 3.35 (m, 5H), 2.95 (d, J = 12.6 Hz, 1H), 2.71 (s, 1H), 2.44 – 2.36 (m, 1H), 2.31 (s, 3H), 2.06 – 1.89 (m, 2H), 1.79 – 1.66 (m, 1H), 1.67 – 1.48 (m, 3H), 1.42 (d, J = 6.3 Hz, 3H); LCMS (ESI): [M+1]+ = 592.2. [1675] Example 100 – Compound 259 & 260: ((R)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-3,3-difluoroazetidin-2- yl)methanol & ((S)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-3,3-difluoroazetidin-2-yl)methanol
Figure imgf000483_0001
[1676] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-12-((R)-3,3-difluoro-2-(hydroxymethyl)azetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate and tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl- 2-(trifluoromethyl)phenyl)-12-((S)-3,3-difluoro-2-(hydroxymethyl)azetidin-1-yl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1677] Prepared by General Procedure B using rac-tert-butyl 3,3-difluoro-2- (hydroxymethyl)azetidine-1-carboxylate (37.3 mg, 0.167 mmol, 2.0 equiv) and intermediate 5 (76.2 mg, 0.0836 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i- PrOAc in heptane) to afford the title product as a mixture of diastereomers (75.7 mg, 0.0794 mmol, 94.9% yield). LCMS (ESI): [M+1]+ = 954.3. [1678] Step 2: ((R)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-3,3-difluoroazetidin-2-yl)methanol and ((S)-1- ((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen- 12-yl)-3,3-difluoroazetidin-2-yl)methanol [1679] Prepared by General Procedure D using 75.7 mg (0.0794 mmol, 1 equiv) of above intermediate. Purification by prep SFC (Chiralpak IK 150 x 21.2 mm 5 µm column, 40 ^C, isocratic 65% carbon dioxide, 35% methanol with 0.1% ammonium hydroxide additive, 70 mL/min flow rate, 265 nm detection wavelength, 10 min run) afforded Compound 259 (11.2 mg, 0.0183 mmol, 23.0% yield) and Compound 260 (7.2 mg, 0.0117 mmol, 14.8 % yield). The absolute configuration of each isomer was not determined. [1680] Compound 259: 1H NMR (400 MHz, DMSO) δ 6.66 – 6.38 (m, 1H), 5.99 (s, 2H), 5.25 (s, 1H), 5.12 (d, J = 12.8, Hz, 1H), 4.76 – 4.64 (m, 1H), 4.50 – 4.33 (m, 3H), 3.98 (d, J = 9.7 Hz, 1H), 3.92 (d, J = 9.0 Hz, 1H), 3.87 – 3.76 (m, 1H), 3.52 (d, J = 5.7 Hz, 1H), 3.42 (d, J = 6.0 Hz, 1H), 2.99 (d, J = 12.7 Hz, 1H), 2.32 (s, 3H), 1.89 – 1.78 (m, 1H), 1.70 – 1.49 (m, 3H), 1.43 (d, J = 6.3 Hz, 3H); LCMS (ESI): [M+1]+ = 614.2. [1681] Compound 260: δ 1H NMR (400 MHz, DMSO) δ 6.66 – 6.37 (m, 1H), 5.98 (s, 2H), 5.25 (s, 1H), 5.05 (d, J = 12.6 Hz, 1H), 4.66 (s, 1H), 4.52 – 4.31 (m, 3H), 4.01 – 3.89 (m, 2H), 3.83 (dt, J = 11.6, 7.0 Hz, 1H), 3.55 – 3.49 (m, 1H), 3.42 (d, J = 5.8 Hz, 1H), 2.99 (d, J = 12.8 Hz, 1H), 2.31 (s, 3H), 1.89 – 1.78 (m, 1H), 1.70 – 1.48 (m, 3H), 1.43 (d, J = 6.3 Hz, 3H); LCMS (ESI): [M+1]+ = 614.2. [1682] Example 101 – Compound 261: 1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-3-(trifluoromethyl)azetidin-3-ol
[1683] Step 1: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-(3-hydroxy-3-(trifluoromethyl)azetidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1684] Prepared by General Procedure B using tert-butyl 3-hydroxy-3- (trifluoromethyl)azetidine-1-carboxylate (26.5 mg, 0.110 mmol, 2.0 equiv) and intermediate 5 (50.0 mg, 0.0549 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i- PrOAc in heptane) to afford the title product (49.1 mg, 0.0505 mmol, 92.0% yield). LCMS (ESI): [M+1]+ = 972.3. [1685] Step 2: 1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl)-1- fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9- methanonaphtho[1,8-ab]heptalen-12-yl)-3-(trifluoromethyl)azetidin-3-ol [1686] Prepared by General Procedure D using 49.1 mg (0.0505 mmol, 1 equiv) of above intermediate. Purification by prep HPLC (XSelect CSH Prep C1850 x 30 mm 5 µm column, gradient 20% to 60% of 0.1% aqueous ammonium hydroxide in acetonitrile, 60 mL/min flow rate, 10 min run time, 261 nm detection wavelength) afforded Compound 261 (14.4 mg, 0.0228 mmol, 45.2% yield). 1H NMR (400 MHz, DMSO) δ 7.42 (s, 1H), 6.65 – 6.38 (m, 1H), 5.98 (s, 2H), 5.10 (dd, J = 12.8, 2.5 Hz, 1H), 4.42 (t, J = 7.7 Hz, 1H), 4.33 (t, J = 12.8 Hz, 2H), 4.16 – 4.04 (m, 2H), 3.91 (d, J = 9.1 Hz, 1H), 3.51 (d, J = 5.7 Hz, 1H), 3.40 (d, J = 6.1 Hz, 1H), 2.96 (d, J = 12.7 Hz, 1H), 2.80 – 2.62 (m, 1H), 2.31 (s, 3H), 1.94 – 1.81 (m, 1H), 1.70 – 1.49 (m, 3H), 1.42 (d, J = 6.3 Hz, 3H); LCMS (ESI): [M+1]+ = 632.2. [1687] Example 102 – Compound 262: ((2R,3R)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3- methyl-2-(trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa- 3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-3-fluoroazetidin-2- yl)methanol
Figure imgf000486_0001
[1688] tert-butyl (2R,3S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3-hydroxyazetidine-1- carboxylate was prepared as described above for Compound 251. [1689] Step 1: tert-butyl (2R,3S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-3- (((trifluoromethyl)sulfonyl)oxy)azetidine-1-carboxylate [1690] To a dry 2-dram vial equipped with a magnetic stirring rod was added tert-butyl (2R,3S)-2- [[tert-butyl(dimethyl)silyl]oxymethyl]-3-hydroxy-azetidine-1-carboxylate (500 mg, 1.57 mmol, 1 equiv) and dissolved in DCM (5 mL) and then 2,6-lutidine (0.370 mL, 3.15 mmol, 2.0 equiv) was added to this solution. This solution was then cooled to -40 °C (dry ice / MeCN bath) and then treated dropwise with trifluoromethanesulfonic anhydride (0.290 mL, 1.73 mmol, 1.1 equiv). The solution was allowed to stir at -40 °C for 1 h. After this time, the reaction mixture was diluted with Et2O (50 mL) and then washed with 1 M aq HCL (2 x 20 mL) and water (20 mL). The combined organic fractions were dried over magnesium sulfate, filtered, and concentrated under reduced pressure. Purification by flash silica gel chromatography (0 to 30% i-PrOAc in heptane) afforded tert-butyl (2R,3S)-2-[[tert-butyl(dimethyl)silyl]oxymethyl]-3-(trifluoromethylsulfonyloxy)azetidine- 1-carboxylate (632 mg, 1.41 mmol, 89.3% yield) as a colorless oil. 1H NMR (400 MHz, CDCl3) δ 5.40 – 5.34 (m, 1H), 4.40 (s, 1H), 4.16 (dd, J = 10.5, 4.8 Hz, 1H), 4.04 – 3.96 (m, 2H), 3.79 (d, J = 11.4 Hz, 1H), 1.45 (s, 9H), 0.90 (s, 9H), 0.08 (s, 3 H), 0.07 (s, 3H). [1691] Step 2: tert-butyl (2R,3R)-3-fluoro-2-(hydroxymethyl)azetidine-1-carboxylate [1692] To a dry 20 mL vial equipped with a magnetic stirring rod was added tert-butyl (2R,3S)-2- [[tert-butyl(dimethyl)silyl]oxymethyl]-3-(trifluoromethylsulfonyloxy)azetidine-1-carboxylate (199 mg, 0.443 mmol, 1 equiv) and then dissolved in THF (2.5 mL). This solution was cooled to 0 °C and then TBAF (1 M in THF, 1.55 mL, 1.55 mmol, 3.5 equiv) was added and then the reaction mixture was allowed to warm to room temperature and stir for 1.5 h. After this time, the reaction mixture was filtered through a plug of silica gel eluting with i-PrOAc (10 mL) and then concentrated under reduced pressure. Purification by flash silica gel chromatography (100% i-PrOAc) afforded tert-butyl (2R,3R)-3-fluoro-2-(hydroxymethyl)azetidine-1-carboxylate (69.3 mg, 0.338 mmol, 76.3% yield) as a colorless oil. 1H NMR (400 MHz, CDCl3) δ 5.40 – 5.15 (m, 1H), 4.58 – 4.43 (m, 1H), 4.18 (ddd, J = 20.9, 10.8, 5.8 Hz, 1H), 4.09 – 3.84 (m, 3H), 1.46 (s, 9H); 19F NMR (376 MHz, CDCl3) δ -199.9. [1693] Step 3: tert-butyl (5S,5aS,6S,9R)-2-(5-(bis(4-methoxybenzyl)amino)-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-12-((2R,3R)-3-fluoro-2-(hydroxymethyl)azetidin-1-yl)-5-methyl- 5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14-pentaaza-6,9-methanonaphtho[1,8-ab]heptalene- 14-carboxylate [1694] Prepared by General Procedure B using tert-butyl (2R,3R)-3-fluoro-2- (hydroxymethyl)azetidine-1-carboxylate (41.5 mg, 0.202 mmol, 2.3 equiv) and intermediate 5 (80.0 mg, 0.0878 mmol, 1 equiv). Product was purified by flash silica gel chromatography (0 to 100% i- PrOAc in heptane) to afford the title product (79.6 mg, 0.0850 mmol, 96.8% yield). LCMS (ESI): [M+1]+ = 936.3. [1695] Step 4: ((2R,3R)-1-((5S,5aS,6S,9R)-2-(5-amino-4-fluoro-3-methyl-2- (trifluoromethyl)phenyl)-1-fluoro-5-methyl-5a,6,7,8,9,10-hexahydro-5H-4-oxa-3,10a,11,13,14- pentaaza-6,9-methanonaphtho[1,8-ab]heptalen-12-yl)-3-fluoroazetidin-2-yl)methanol [1696] Prepared by General Procedure D using 79.6 mg (0.0850 mmol, 1 equiv) of above intermediate. Purification by prep SFC (Synergi Polar RP 150 x 21.2 mm 5 µm column, 40 ^C, isocratic 75% carbon dioxide, 25% methanol, 70 mL/min flow rate, 265 nm detection wavelength, 5 min run) afforded Compound 262 (33.0 mg, 0.0554 mmol, 65.2% yield). 1H NMR (400 MHz, DMSO) δ 6.68 – 6.40 (m, 1H), 5.98 (s, 2H), 5.58 – 5.36 (m, 1H), 5.12 (d, J = 12.6 Hz, 1H), 4.61 (dd, J = 15.7, 6.8 Hz, 1H), 4.46 – 4.28 (m, 2H), 4.13 – 3.99 (m, 1H), 3.98 – 3.83 (m, 3H), 3.51 (d, J = 5.8 Hz, 1H), 3.41 (d, J = 5.7 Hz, 1H), 3.18 (d, J = 5.1 Hz, 2H), 2.97 (d, J = 12.7 Hz, 1H), 2.31 (s, 3H), 1.86 (s, 1H), 1.70 – 1.47 (m, 3H), 1.42 (d, J = 6.3 Hz, 3H); LCMS (ESI): [M+1]+ = 596.2. [1697] BIOLOGICAL ASSAYS [1698] Example 103: KRAS G12D LoEnz Biochemical Assay, BODIPY-GDP Exchange TR- FRET. Biochemical compound potencies are assessed by evaluating inhibition of SOS1-mediated nucleotide exchange in KRAS G12D. In this assay, the SOS1-promoted exchange of fluorescently- labeled GDP (BOPIDY-GDP) is monitored by time-resolved fluorescence resonance energy transfer (TR-FRET). Compounds solubilized in DMSO are dispensed as concentration series into 384-well white assay plates. A preformed complex of biotin-tagged recombinant human KRAS (0.06 nM mutant G12D) and 0.06 nM terbium-labeled streptavidin (CisBIO) prepared in 10 uL/well assay buffer (20 mM HEPES, pH 7.5, 50 mM NaCl, 10 mM MgCl2, 0.01% Tween-20 and 1 mM dithiothreitol) is added and allowed to incubate for 10-minutes at room temperature. The reaction is initiated with the addition of 5 uL 300 nM recombinant human SOS1 and 300 nM BODIPY-GDP in assay buffer. After a 120-minute incubation, the fluorescence is measured with excitation at 337 nm and emission at 490 and 520 nm. The TR-FRET ratio is determined as the fluorescence at 520 nm divided by the fluorescence at 490 nm multiplied by 10,000. The results are normalized to percent inhibition based on control samples: DMSO (0% inhibition) and control compound at a concentration that inhibits completely (100% inhibition). The normalized TR-FRET results are plotted against compound concentration, and the data are fit to a 4-parameter Hill equation to determine the IC50 values. [1699] Example 104: KRAS WT Biochemical Assay, BODIPY-GDP Exchange TR-FRET. Biochemical compound potencies are assessed by evaluating inhibition of SOS1-mediated nucleotide exchange in KRAS WT. In this assay, the SOS1-promoted exchange of fluorescently- labeled GDP (BOPIDY-GDP) is monitored by time-resolved fluorescence resonance energy transfer (TR-FRET). Compounds solubilized in DMSO are dispensed as concentration series into 384-well white assay plates, and 5 uL assay buffer (20 mM HEPES, pH 7.5, 50 mM NaCl, 10 mM MgCl2, 0.01% Tween-20 and 1 mM dithiothreitol) is added just prior to the start of the assay. A preformed complex of 3 nM biotin-tagged recombinant human KRAS WT and 0.3 nM terbium-labeled streptavidin (CisBIO) prepared in 5 uL/well assay buffer is added and allowed to incubate for 10- minutes at room temperature. The reaction is initiated with the addition of 5 uL 3 nM recombinant human SOS1 and 300 nM BODIPY-GDP in assay buffer. After a 60-minute incubation, the fluorescence is measured with excitation at 337 nm and emission at 490 and 520 nm. The TR-FRET ratio is determined as the fluorescence at 520 nm divided by the fluorescence at 490 nm multiplied by 10,000. The results are normalized to percent inhibition based on control samples: DMSO (0% inhibition) and control compound at a concentration that inhibits completely (100% inhibition). The normalized TR-FRET results are plotted against compound concentration, and the data are fit to a 4- parameter Hill equation to determine the IC50 values. [1700] Example 105: KRAS WT Biochemical Assay, BODIPY-GDP Exchange TR-FRET. Biochemical compound potencies are assessed by evaluating inhibition of SOS1-mediated nucleotide exchange in KRAS WT. In this assay, the SOS1-promoted exchange of fluorescently- labeled GDP (BOPIDY-GDP) is monitored by time-resolved fluorescence resonance energy transfer (TR-FRET). Compounds solubilized in DMSO are dispensed as concentration series into 384-well white assay plates. A preformed complex of 0.06 nM biotin-tagged recombinant human KRAS WT, 15 nM GDP and 0.06 nM terbium-labeled streptavidin (CisBIO) prepared in 10 uL/well assay buffer (20 mM HEPES, pH 7.5, 50 mM NaCl, 10 mM MgCl2, 0.01% Tween-20 and 1 mM dithiothreitol) is added and allowed to incubate for 10-minutes at room temperature. The reaction is initiated with the addition of 5 uL 300 nM recombinant human SOS1 and 300 nM BODIPY-GDP in assay buffer. After a 120-minute incubation, the fluorescence is measured with excitation at 337 nm and emission at 490 and 520 nm. The TR-FRET ratio is determined as the fluorescence at 520 nm divided by the fluorescence at 490 nm multiplied by 10,000. The results are normalized to percent inhibition based on control samples: DMSO (0% inhibition) and control compound at a concentration that inhibits completely (100% inhibition). The normalized TR-FRET results are plotted against compound concentration, and the data are fit to a 4-parameter Hill equation to determine the IC50 values. [1701] Example 106: KRAS 3D-Cell Proliferation Assays. Cellular potencies of compounds are assessed by evaluating inhibition of proliferation in 3D cultures of homozygous mutant KRAS G12D human pancreatic cell lines (AsPC-1 and HPAC) as compared to a KRAS wild type human lung adenocarcinoma cell line (PC-9 and/or H1975). Cells are seeded into 384-well black round- bottom, ultra-low attachment assay plates in 50 uL cell growth medium (RPMI-1640 with 10% fetal bovine serum and 2 mM L-glutamine). After overnight incubation at 37°C and 5% CO2, compounds solubilized in DMSO are added as dilution series to the wells in a total volume of 150 nL (0.3% DMSO final). The cells are incubated for 7 days at 37°C and 5% CO2. Cell proliferation is quantitated by addition of 40 uL/well of CellTiter-Glo® 3D (Promega), and the well contents are mixed 20x at high speed using liquid handling automation workstation (Bravo with 384-well head) and centrifuged at 1500 rpm for 2 minutes to eliminate bubbles. This reagent in combination with mechanical disruption releases the cellular ATP to promote activity in a luciferase-based enzyme/substrate chemiluminescent detection system. After a 30-minute incubation under ambient conditions with shaking and an additional 10 minutes without shaking, the luminescence is read on a plate reader (e.g., EnVision [PerkinElmer]). The results are normalized to percent inhibition based on the following control samples: DMSO (0% inhibition) and 1 µM staurosporine (100% inhibition). The normalized luminescence results are plotted against compound concentration, and the data are fit to a 4-parameter Hill equation to determine the IC50 values. Table 22: Exemplary Compound Potencies.
Figure imgf000490_0001
Figure imgf000491_0001
Figure imgf000492_0001
Figure imgf000493_0001
Figure imgf000494_0001
Figure imgf000495_0001
Figure imgf000496_0001
Figure imgf000497_0001
NT = not tested

Claims

CLAIMS What is claimed is: 1. A compound of formula (I),
Figure imgf000498_0001
or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2;
Figure imgf000498_0002
, wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, -CN, -NH2, -N(Me)2, C1-3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is -NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1-3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z1 is L1NR5R6, wherein: L1 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L2NR8R9, C1-6alkyl, L2Cy, or S(=O)2R8, wherein: L2 is selected from: -S(=O)2(CH2)q-, -C(=O)(CH2)q-, -(CH2)q-, -P(=O)3(CH2)q-, –(CH2)–CH=CH–, and –CH=CH–(CH2)–, wherein q = 1 – 3; R8 and R9 are each independently hydrogen, C1-6alkyl, or C1-3haloalkyl; and Cy is a 3 – 10 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, two or three chained rings, and a spirocyclic ring; R6 is H or C1-6alkyl; or R5 and R6 together with the nitrogen atom to which they are both bonded form a group Q; wherein Q is: a 3 – 10 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, two or three chained rings, and a spirocyclic ring; optionally substituted with one or more R10 groups independently selected from: sulfonyl, cyano, halo, -NH2, -NHR11, -N(R11)2, -R11-NH2, -R11-NH-R11, -R11-N(R11)2, hydroxyl, C1-6alkoxy, C1-6alkyl, C1-6cycloalkyl, C1-6alkoxy-C1-6alkyl, C1-6haloalkoxy-C1- 6alkyl , cyano-C1-6alkyl C2-6alkenyl, hydroxy-C1-6alkyl, oxo, C1-6alkylcarbenyl, carboxy- C1-6alkyl, and C1-6haloalkyl; wherein each R11 is independently selected from C1-6alkyl, C1-6haloalkyl, and hydroxyl-C1-6alkyl; wherein Q optionally comprises one or more heteroatoms selected from O, S(O)2, and N in addition to the nitrogen atom to which R5 and R6 are both bonded, wherein each additional instance of N is present in Q as N–H, N(R11), or as a tertiary N; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6haloalkyl. 2. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of claim 1, wherein X is -NR12-. 3. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of claim 1 or 2, wherein X is -NH-. 4. A compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 1-3, wherein: m = 0; n = 1; and p = 1. 5. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 1-4, wherein one of R01, R02, R03, R04, and R05 is amino. 6. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 1-5, wherein R1 is: 7. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 1-6, wherein R1 is:
Figure imgf000500_0001
8. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 1-7, wherein
Figure imgf000501_0001
9. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 1-8, wherein R2 is fluoro. 10. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 1-9, wherein R3' and R3'' are both H. 11. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 1-10, wherein each R4' is hydrogen and R4'' is methyl. 12. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 1-11, wherein, when present, at least one of R10 is selected from -NH2, -NHR11, -N(R11)2, -R11-NH2, -R11-NH-R11, -R11-N(R11)2. 13. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 1-12, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form an azetidine ring. 14. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 1-12, wherein R5 and R6 together with the nitrogen atom to which they are both bonded form a pyrrolidine ring. 15. A compound of formula (II),
Figure imgf000501_0002
or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2; p is 0, 1, or 2; , wherein Y1 is N or CR01, Y2 is N or CR02, Y3 is N or CR03; and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, -CN, -NH2, -N(Me)2, C1-3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is -NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1- 3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z2 is L0OR5, wherein: L0 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L1J1, or L2Q, wherein: L1 is selected from: –(CH2)q–, –(CH2)C(Ra)(Rb)–, –(CH2)C(H)(Ra)C(H)(Rb)–, –C(H)(Ra)C(H)(Rb)–, –(CH2)Cy– and a bond, wherein q = 1 – 3, Ra and Rb together with the carbon atoms to which each is attached form a ring, and Cy is an optionally substituted 1,2-linked cyclopropyl ring; J1 is selected from: cyano, –C(=O)NR8R9, –C(=O)OR8, -OR8, and - R8; wherein R8 and R9 are independently selected from H, C1-6alkyl, C2- 6alkenyl, and phenyl, with the proviso that R8 and R9 are not both H; and wherein Cy, Ra, Rb, R8 and R9 are each optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, alkylcarboxy, C1-6alkoxy, and oxo; and L2 is selected from: –(CHR13)q–, -(CH2)q-C(=O)- and a bond; Q is a 3 – 11 membered ring selected from a monocyclic ring, a fused bicyclic ring, a bridged bicyclic ring, and a spirocyclic ring; wherein Q is optionally substituted with one or more groups independently selected from: halogen, sulfonyl, cyano, oxo, -NR13C(=O)R14, -C(=O)R14, hydroxyl, -OR14, and -R14; R13 and R14 are independently selected from: hydrogen, C1-6alkyl, and C2-6alkenyl; and wherein R13 and R14 are each optionally and independently substituted by one or more groups selected from: sulfonyl, -S(=O)2(R11), cyano, halogen, oxo, hydroxyl, C1-6alkoxy, and C1-6alkylcarboxy; R11 is selected from C1-6alkyl, C1-6haloalkyl, and hydroxyl-C1- 6alkyl; and wherein Q optionally comprises one or more heteroatoms selected from O, S, S(O)2 and N, wherein each instance of N is present in Q as an amide, amide lactam, or when Q is a heteroaromatic ring moiety; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. 16. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of claim 15, wherein X is -NR12-. 17. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of claim 15 or 16, wherein X is -NH-. 18. A compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 15-17, wherein: m = 0; n = 1; and 19. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 15-18, wherein one of R01, R02, R03, R04, and R05 is amino. 20. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 15-19, wherein R1 is:
Figure imgf000503_0001
21. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 15-20, wherein R1 is:
Figure imgf000504_0001
22. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 15-21, wherein
Figure imgf000504_0002
23. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 15-22, wherein R2 is fluoro. 24. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 15-23, wherein R3' and R3'' are both H. 25. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 15-24, wherein each R4' is hydrogen and R4'' is methyl. 26. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 15-25, wherein L1 is a bond.
27. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 15-26, wherein Q is selected from: cyclopropane, cyclobutane, cyclohexane, benzene, pyrollidine, piperidine, morpholine, pyridine, pyridazine, pyrazine, pyrimidine, 1,4-dioxane, 1H-pyrazole, isoindoline-1,3-dione, 2-oxabicyclo[2.1.1]hexane, tetrahydrofuran, oxetane, tetrahydropyran, thietane, 2,3-dihydrobenzofuran, iso-oxazole, bicyclo[1.1.1]pentane, 6,7-dihydro-5H-pyrrolo[1,2-a]imidazole, imidazole, tetrahydro-2H- thiopyran, 1,2,4-triazole, and 9-oxa-2-azaspiro[5.5]undecane. 28. A compound of formula (III),
Figure imgf000505_0001
or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, wherein: m is 0 or 1; n is 1 or 2; wherein n + m does not exceed 2;
Figure imgf000505_0002
and each of R01, R02, R03, R04, and R05 is independently hydrogen, halogen, -CN, -NH2, - N(Me)2, C1-3alkyl, C1-3haloalkyl, or cyclopropyl, and wherein at least one of R01, R02, R03, R04, and R05 is -NH2, and at least one of R01, R02, R03, R04, and R05 is methyl; R2 is hydrogen, cyano, halogen, C1-3alkyl, C1-3haloalkyl, or cyclopropyl; R3' and R3'' are independently hydrogen, halogen, oxo, C1-3 alkyl, or C1-3haloalkyl; R4' and R4'' are independently hydrogen, methyl, or C1-3haloalkyl; Z3 is L1OR5, wherein: L1 is a bond, –C(=O)–, or –C(H)R7–, wherein R7 is H or C1-3alkyl; R5 is L2J, or L2QJ, wherein: L2 is selected from: –(CH2)q–, –(CH2)q–C(=O)–, and a bond, wherein q = 1 – 3; J is C1-6alkyl-NR8R9 or -NR8R9; wherein R8 and R9 are independently selected from H, C1-6alkyl, and C2- 6alkenyl; wherein J is optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, and C1-6alkoxy; and, when not H, each of R8 and R9 is optionally and independently substituted with one or more groups selected from: halogen, cyano, hydroxyl, C1- 6alkylcarboxy, C1-6alkoxy, C1-6cycloalkyl, 5-6 membered heterocyclyl, and oxo; Q is a 3 – 8 membered ring moiety selected from a monocyclic ring, a fused bicyclic ring, and a spirocyclic ring; wherein Q is optionally substituted with one or more groups independently selected from: halogen, cyano, oxo, hydroxyl, C1-6alkoxy, and C1- 6haloalkyl; wherein Q optionally comprises one or more heteroatoms selected from O, S, and N; wherein L2 and J both bond to the same ring atom of Q; and X is -O- or -NR12-, wherein R12 is hydrogen, C1-6alkyl, or C1-6 haloalkyl. 29. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of claim 28, wherein X is -NR12-. 30. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of claim 28 or 29, wherein X is -NH-. 31. A compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 28-30, wherein: m = 0; n = 1; and p = 1. 32. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 28-31, wherein one of R01, R02, R03, R04, and R05 is amino. 33. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 28-32, wherein R1 is: 34. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 28-33, wherein R1 is:
Figure imgf000507_0001
35. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 28-34, wherein
Figure imgf000508_0001
36. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 28-35, wherein R2 is fluoro. 37. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 28-36, wherein R3' and R3'' are both H. 38. The compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 28-37, wherein each R4' is hydrogen and R4'' is methyl. 39. The compound of any one of claims 28-38, wherein Q is cyclopropyl. 40. The compound of any one of claims 28-39, wherein q = 1. 41. A compound selected from any one of compounds 1-262 as set forth in Table 1 or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof. 42. A pharmaceutical composition comprising a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 1-41, and one or more pharmaceutically acceptable excipients. 43. A method of treating cancer, the method comprising administering an effective amount of a compound or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof of any one of claims 1-41, or a pharmaceutical composition of claim 42. 44. The method of claim 43, wherein the cancer is characterized as comprising a KRas mutation. 45. The method of claim 44, wherein the KRas mutation corresponds to a KRasG12D mutation. 46. The method of any one of claims 43-45, wherein the cancer is tissue agnostic. 47. The method of any one of claims 43-45, wherein the cancer is pancreatic cancer, lung cancer, or colorectal cancer. 48. The method of claim 47, wherein the lung cancer is lung adenocarcinoma, NSCLC, or SCLC. 49. A compound according to any one of claims 1-41, or a stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for use as a therapeutically active substance. 50. Use of a compound of any one of claims 1-41, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for the therapeutic treatment of a cancer comprising a KRasG12D mutation.
51. Use of a compound of any one of claims 1-41, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, for the preparation of a medicament for the therapeutic treatment of a cancer comprising a KRasG12D mutation. 52. A compound according to any one of claims 1-41, or stereoisomer, atropisomer, tautomer, or pharmaceutically salt thereof, for the therapeutic and/or prophylactic treatment of a cancer comprising a KRasG12D mutation. 53. Use of a compound of any one of claims 1-41, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for inhibiting proliferation of a cell population. 54. Use of a compound of any one of claims 1-41, or stereoisomer, atropisomer, tautomer, or pharmaceutically acceptable salt thereof, in the manufacture of a medicament for inhibiting tumor metastasis.
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