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WO2023010326A1 - PRIMER-PROBE SET AND KIT FOR HUMAN β-TRYPTASE MRNA RT-PCR DETECTION - Google Patents

PRIMER-PROBE SET AND KIT FOR HUMAN β-TRYPTASE MRNA RT-PCR DETECTION Download PDF

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Publication number
WO2023010326A1
WO2023010326A1 PCT/CN2021/110520 CN2021110520W WO2023010326A1 WO 2023010326 A1 WO2023010326 A1 WO 2023010326A1 CN 2021110520 W CN2021110520 W CN 2021110520W WO 2023010326 A1 WO2023010326 A1 WO 2023010326A1
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probe
primer
tpsb
labeled
seq
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Chinese (zh)
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吴善东
程雷
刘奕
吴周杰
蒋学翰
雷薇
王吉萍
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Hangzhou Zheda Dixun Biological Gene Engineering Co Ltd
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Hangzhou Zheda Dixun Biological Gene Engineering Co Ltd
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids

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  • the invention relates to the technical field of biological detection, in particular to a primer probe set and a kit for human ⁇ -tryptase mRNA RT-PCR detection.
  • Mast cells are activated during anaphylaxis, releasing inflammatory mediators including tryptase, a process that contributes to the signs and symptoms of anaphylaxis.
  • Tryptase has the functions of promoting the repair of airway, regulating the tension and reactivity of airway smooth muscle cells, and stimulating the activation of mast cells.
  • tryptase is divided into three categories at the cDNA and protein levels: ⁇ , ⁇ , ⁇ , among which ⁇ has the highest content.
  • TPSB ⁇ -tryptase
  • beta-tryptase in the blood suggest an allergic reaction to a drug, insect venom, or food, and long-term, persistently elevated levels suggest mastocytosis or a hematological neoplasm. Elevated levels (or concentrations) of ⁇ -tryptase in nasal secretions suggest active allergic rhinitis or patients with allergic rhinitis are undergoing allergen challenge testing.
  • TPSB enzyme-linked immunosorbent assay
  • ELISA enzyme linked immunosorbent assay
  • the object of the present invention is to provide a kind of primer probe group and kit for human ⁇ -tryptase mRNA RT-PCR detection.
  • the invention aims at the TaqMan real-time fluorescence quantitative one-step RT-PCR detection primer probe set established for human TPSB, and provides a detection means with high accuracy, wide detection range and high sensitivity for the detection of the protein.
  • the invention provides a primer probe set for human ⁇ -tryptase mRNA RT-PCR detection, the primer probe set includes primer TPSB-F, primer TPSB-R and probe T-Probe, the primer TPSB
  • the nucleotide sequence of -F is as shown in SEQ ID NO.1
  • the nucleotide sequence of described primer TPSB-R is as shown in SEQ ID NO.2
  • the nucleotide sequence of described probe T-Probe is as shown in SEQ ID NO.2 ID NO.3 is shown.
  • the 5' end of the probe T-Probe is labeled with a fluorescent reporter group, and the 3' end is labeled with a quencher group.
  • primer GAPDH-F primer GAPDH-R
  • probe G-Probe of the internal reference gene the nucleotide sequence of the primer GAPDH-F is shown in SEQ ID NO.4, and the primer GAPDH- The nucleotide sequence of R is shown in SEQ ID NO.5, and the nucleotide sequence of the probe G-Probe is shown in SEQ ID NO.6.
  • the 5' end of the probe G-Probe is labeled with a fluorescent reporter group, and the 3' end is labeled with a quencher group; the fluorescent reporter group labeled with the probe G-Probe and the fluorescent reporter group labeled with the probe T-Probe Reporting groups are different.
  • the fluorescent reporter group includes FAM or JOE, and the quencher group includes BHQ1.
  • the present invention also provides a kit for human ⁇ -tryptase mRNA RT-PCR detection, said kit comprising the primer probe set described in the technical scheme, PCR reaction solution, enzyme mixture, ⁇ -tryptase Standards, ROX reference dye, and nuclease-free water.
  • the PCR reaction solution includes dNTP mix, MgCl 2 and buffer.
  • the enzyme mixture comprises Taq enzyme, reverse transcriptase, RNase inhibitor and Taq enzyme antibody.
  • the present invention also provides a method for using the kit described in the above technical scheme, comprising the steps of: mixing primer probe set, PCR reaction solution, enzyme mixture, standard or sample to be tested, ROX reference dye and nuclease-free water After mixing, fluorescent quantitative amplification is performed.
  • the reaction system of the kit includes: 2 ⁇ L of primer probe set, 10 ⁇ L of PCR reaction solution, 0.5 ⁇ L of enzyme mixture, 0.1 ⁇ L of ROX reference dye, 5 ⁇ L of standard or test sample and no 2.4 ⁇ L of ribozyme water; the conditions of the fluorescent quantitative amplification are: 42°C for 30 min; 95°C for 1 min; 95°C for 5 s, 60°C for 31 s, and 40 cycles of amplification.
  • the invention provides a primer probe set for human ⁇ -tryptase mRNA RT-PCR detection.
  • the primer probe set of the present invention when used for detection, it has high sensitivity, can detect low concentration (10copies/ ⁇ L) clinical samples, and can more sensitively detect changes in the content of TPSB. It can span at least 6 orders of magnitude, increasing the accuracy of the detection results, so that the dynamic monitoring and curative effect evaluation of the treatment effect can be performed earlier, more accurately and faster.
  • Fig. 1 is the dilution operation process diagram that the present invention provides
  • Fig. 2 is the TPSB mRNA TaqMan real-time fluorescence quantitative RT-PCR standard curve provided by the present invention
  • Figure 3 is a graph of the precision test results provided by the present invention, in which 1: 1.0 ⁇ 10 6 copies/ ⁇ L, 2: 1.0 ⁇ 10 3 copies/ ⁇ L;
  • Fig. 4 is the accuracy detection result figure that the present invention provides
  • Fig. 5 is the sensitivity detection result figure provided by the present invention.
  • Figure 6 is a diagram of the detection results of clinical samples provided by the present invention; wherein 1: positive sample 5GAPDH mRNA; 2: healthy control 3 GAPDH mRNA; 3: positive sample 5 TPSB mRNA; 4: healthy control 3 TPSB mRNA; 5: blank control NTC -GAPDH mRNA; 6: blank control NTC-TPSB mRNA;
  • Fig. 7 is provided by the present invention under the situation that primer, probe are not optimally designed, low value precision amplification curve
  • Fig. 8 shows the amplification results of the non-optimal ratio enzyme mixture solution and the optimal ratio enzyme mixture solution provided by the present invention.
  • the invention provides a primer probe set for human ⁇ -tryptase mRNA RT-PCR detection
  • the primer probe set includes primer TPSB-F, primer TPSB-R and probe T-Probe, the primer TPSB
  • the nucleotide sequence of -F is as shown in SEQ ID NO.1: 5'-CAGCGAGTGGGCATCGTT-3'
  • the nucleotide sequence of the primer TPSB-R is as shown in SEQ ID NO.2: 5'-ATCCTTGACGTCCGGTCCC-3 '
  • the nucleotide sequence of the probe T-Probe is shown in SEQ ID NO.3: 5'-AGCCTGAGAGTCCGCGACCGAT-3'.
  • the 5' end of the probe T-Probe is labeled with a fluorescent reporter group, and the 3' end is labeled with a quenching group.
  • the fluorescent reporter group preferably includes FAM or JOE, and the quencher group preferably includes BHQ1.
  • the 5' end of the probe T-Probe is labeled with a FAM fluorescent reporter group, and the 3' end is labeled with a BHQ1 quencher group.
  • the primer probe set also includes primer GAPDH-F, primer GAPDH-R and probe G-Probe of the internal reference gene, and the nucleotide sequence of the primer GAPDH-F is as shown in SEQ ID NO.4 Shown: 5'-GACAACAGCCTCAAGATCATC-3', the nucleotide sequence of the primer GAPDH-R is shown in SEQ ID NO.5: 5'-CGCCACAGTTTCCCGGAG-3', the nucleotide sequence of the probe G-Probe As shown in SEQ ID NO.6: 5'-ACTCATGACCACAGTCCATGCCAT-3'.
  • the 5' end of the probe G-Probe is labeled with a fluorescent reporter group, and the 3' end is labeled with a quencher group; the fluorescent reporter group labeled with the probe G-Probe and the probe T-Probe labeled
  • the fluorescent reporter groups are preferably different.
  • the fluorescent reporter group preferably includes FAM or JOE, and the quencher group preferably includes BHQ1.
  • the 5' end of the probe G-Probe is labeled with the JOE fluorescent reporter group, and the 3' end is labeled with the BHQ1 quencher group.
  • the present invention also provides a kit for human ⁇ -tryptase mRNA RT-PCR detection, said kit comprising the primer probe set described in the technical scheme, PCR reaction solution, enzyme mixture, ⁇ -tryptase Standards, ROX reference dye, and nuclease-free water.
  • the PCR reaction solution includes dNTP mix, MgCl 2 and buffer; the dNTP mix is deoxyribonucleoside triphosphate, including dATP, dCTP, dGTP and dTTP, and the dNTP mix of the present invention is preferably purchased Available from ThermoFisher (Cat. No. R0192), the working concentration is preferably 0.1-1 mM.
  • the use concentration of MgCl2 is preferably 5 ⁇ 20mM;
  • the buffer solution is preferably a Tris-HCl buffer solution, more preferably 10 ⁇ 50mM Tris-HCl buffer solution, and the pH value of the Tris-HCl buffer solution is preferably 8.0.
  • the enzyme mixture includes Taq enzyme, reverse transcriptase, RNase inhibitor and Taq enzyme antibody.
  • the volume ratio of Taq enzyme, reverse transcriptase, RNase inhibitor and Taq enzyme antibody is preferably 14:5:5:1, and this ratio can obtain the best amplification effect .
  • Taq enzyme is a heat-resistant Taq DNA polymerase, utilizes its 3' ⁇ 5' polymerase activity to use DNA as a template, and deoxygenated mononucleotides in dNTPs are added to the 3-OH end one by one; Its 5' ⁇ 3' exonuclease activity can recognize and eliminate mismatched primer ends, which is related to the correction function during the replication process, and can also hydrolyze nucleotides from the 5' end, and can also work through several nucleotides , to excise mismatched nucleotides, thereby realizing strand replacement during chain elongation, and cutting off the replaced probe; reverse transcriptase can reverse transcribe mRNA into cDNA for PCR reaction; RNase inhibitor is used to Inhibit the activity of exogenous RNase; Taq enzyme antibody is an anti-Taq antibody for hot-start PCR, which inhibits the activity of DNA polymerase after binding with Taq enzyme, and can effectively inhibit the non-specific anne
  • the ⁇ -tryptase standard product is preferably a ⁇ -tryptase mRNA standard product, which is used to prepare a quantitative curve.
  • the present invention also provides a method for using the kit described in the above technical scheme, comprising the steps of: mixing primer probe set, PCR reaction solution, enzyme mixture, standard or sample to be tested, ROX reference dye and nuclease-free water After mixing, fluorescent quantitative amplification is performed.
  • the kit of the present invention adopts a one-step RT-PCR quantitative detection method, which can detect the expression level of TPSB mRNA in human blood, nasal secretion, bronchial flushing fluid, saliva, and tear fluid samples.
  • the reaction system of the kit in terms of 20 ⁇ L, preferably includes: 2 ⁇ L of primer probe set, 10 ⁇ L of PCR reaction solution, 0.5 ⁇ L of enzyme mixture, 0.1 ⁇ L of ROX reference dye, standard or test sample 5 ⁇ L and 2.4 ⁇ L of nuclease-free water.
  • the conditions for the fluorescent quantitative amplification are preferably: 42°C for 30 min (reverse transcription); 95°C for 1 min (pre-denaturation); 95°C for 5 s, 60°C for 31 s, and 40 cycles of amplification.
  • TPSB and GAPDH use Primer 6.0 software to design fluorescent quantitative primers and probes. After a series of effect verification, the primer pairs TPSB-F, TPSB-R, GAPDH-F, GAPDH-R and probes of TPSB and GAPDH were obtained. T-Probe, G-Probe (see Table 1). Primers and probes were synthesized by Shanghai Sunny Biotechnology Co., Ltd.
  • TPSB plasmid DNA was transcribed into mRNA in vitro with HiScribe T7 High Yield RNA Synthesis Kit (produced by NEW ENGLAND BioLabs, Cat. No.: E2040S).
  • copy number [6.02 ⁇ 10 23 ⁇ RNA concentration (ng/ ⁇ L) ⁇ 10 -9 ]/[RNA length (bp) ⁇ 340], calculate the initial RNA copy number. Dilute with nuclease-free water to 1.0 ⁇ 10 9 copies/ ⁇ L, which is the TPSB standard.
  • EDTA anticoagulated whole blood samples were extracted with a whole blood total RNA kit, quantified with a Qubit 3 fluorometer, and then diluted to 20 ng/ ⁇ L with nuclease-free water.
  • the TPSB standard was diluted in a 10-fold gradient, and 1.0 ⁇ 10 7 to 1.0 ⁇ 10 2 copies/ ⁇ L was selected as a template, and each dilution was replicated twice for TaqMan real-time fluorescent quantitative RT-PCR detection to generate a standard curve.
  • the dilution operation process is shown in Figure 1, taking 50 ⁇ L/tube as an example, during each dilution process, take 5 ⁇ L of the sample before dilution and add it to a new tube containing 45 ⁇ L of water.
  • step 2.3 Take positive samples and healthy control whole blood samples for whole blood RNA extraction and dilution according to step 2.3, and perform TaqMan real-time fluorescent quantitative RT-PCR detection according to step 2.4.
  • TPSB Dilute the TPSB standard product according to a 10-fold gradient, select 1.0 ⁇ 10 7 ⁇ 1.0 ⁇ 10 2 copies/ ⁇ L as the template, and perform 2 replicates for each dilution, perform TaqMan real-time fluorescent quantitative RT-PCR detection, and generate a standard curve, TPSB
  • the present invention uses whole blood RNA for detection, and the ImmunCAP TM TPSB reagent uses serum for detection.
  • TPSB-F TGCAGCGAGTGGGCATCGT (SEQ ID NO. 7);
  • TPSB-R TCTGGGCGGTGTAGAACTGT (SEQ ID NO. 8);
  • the coefficient of variation of the concentration logarithmic value of the low-value precision exceeds 5%, reaching 10.267%.
  • Table 8 The coefficient of variation results of the concentration logarithmic value of non-optimal primers and probes with low precision
  • Amplify with a non-optimal ratio of enzyme mixture (the volume ratio of Taq enzyme, reverse transcriptase, RNase inhibitor and Taq enzyme antibody is 11:4:3:1) and an optimal ratio of enzyme mixture
  • a non-optimal ratio of enzyme mixture the volume ratio of Taq enzyme, reverse transcriptase, RNase inhibitor and Taq enzyme antibody is 11:4:3:1
  • an optimal ratio of enzyme mixture For 3 whole blood RNA samples, primers and probes for amplification, amplification system, and procedures were the same as in Example 1.
  • the result is shown in Figure 8, the amplification result using the non-optimal enzyme mixture ratio is shown in A in Figure 8, and the amplification result using the best enzyme mixture ratio is shown in Figure 8 B Show.
  • the concentration of the enzyme mixture in different proportions will affect the amplification effect of the sample, and the poor amplification effect will lead to deviation and inaccuracy in the measured final concentration results. Therefore, the optimal ratio of enzyme mixture should be used.
  • the Ct value of the amplification result of the non-optimal ratio of enzyme mixture is relatively delayed by 3 cycles
  • the repeated results of the same sample under the optimal enzyme mixture ratio are more consistent and the difference is smaller. It can be seen that the amplification effect of the best enzyme mixture is better.

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Abstract

The present invention relates to a primer-probe set and a kit for human β-tryptase mRNA RT-PCR detection, which belongs to the technical field of biological detection. The primer-probe set of the present invention comprises a primer TPSB-F, a primer TPSB-R and a probe T-Probe, wherein the nucleotide sequence of the primer TPSB-F is as shown in SEQ ID NO: 1; the nucleotide sequence of the primer TPSB-R is as shown in SEQ ID NO: 2; and the nucleotide sequence of the probe T-Probe is as shown in SEQ ID NO: 3. By means of the present invention, a one-step TaqMan real-time fluorescent quantitative RT-PCR detection primer-probe set is established for human TPSB, and provides a detection means with high accuracy, a wide detection range and high sensitivity for detection of the protein.

Description

一种人β-类胰蛋白酶mRNA RT-PCR检测用引物探针组和试剂盒A kind of primer probe set and kit for human β-tryptase mRNA RT-PCR detection 技术领域technical field

本发明涉及生物检测技术领域,具体涉及一种人β-类胰蛋白酶mRNA RT-PCR检测用引物探针组和试剂盒。The invention relates to the technical field of biological detection, in particular to a primer probe set and a kit for human β-tryptase mRNA RT-PCR detection.

背景技术Background technique

肥大细胞在过敏反应中被激活,释放包括类胰蛋白酶在内的炎症介质,这一过程导致过敏反应的症状和体征。类胰蛋白酶具有促进气道的修复、调节气道平滑肌细胞的张力和反应性、刺激肥大细胞的活化等作用。目前,类胰蛋白酶在cDNA和蛋白水平被分为三类:α、β、γ,其中β含量最高。发生过敏反应后,血液循环中β-类胰蛋白酶(TPSB)水平的短暂升高有助于识别和评估过敏反应的程度,测定β-类胰蛋白酶水平短暂升高的样品应在发生过敏反应后15分钟至3小时采集。血液中短暂的β-类胰蛋白酶水平升高提示药物、昆虫毒液或食物引起过敏反应,长期持续的β-类胰蛋白酶水平升高则提示肥大细胞增生症或血液肿瘤。鼻腔分泌物中β-类胰蛋白酶水平(或浓度)升高提示活动性过敏性鼻炎或是过敏性鼻炎患者正在变应原激发试验。Mast cells are activated during anaphylaxis, releasing inflammatory mediators including tryptase, a process that contributes to the signs and symptoms of anaphylaxis. Tryptase has the functions of promoting the repair of airway, regulating the tension and reactivity of airway smooth muscle cells, and stimulating the activation of mast cells. At present, tryptase is divided into three categories at the cDNA and protein levels: α, β, γ, among which β has the highest content. After an allergic reaction, a transient increase in the level of β-tryptase (TPSB) in the blood circulation helps to identify and assess the degree of the allergic reaction. 15 minutes to 3 hours of collection. Transiently elevated levels of beta-tryptase in the blood suggest an allergic reaction to a drug, insect venom, or food, and long-term, persistently elevated levels suggest mastocytosis or a hematological neoplasm. Elevated levels (or concentrations) of β-tryptase in nasal secretions suggest active allergic rhinitis or patients with allergic rhinitis are undergoing allergen challenge testing.

现在市场上对于TPSB的检测仍使用酶联免疫吸附法(enzyme linked immunosorbent assay,ELISA)试剂盒检测其在体液中的含量,尚未见检测TPSB mRNA的商业化试剂盒。ELISA方法在检测过程中存在着检测范围小和灵敏度低的问题,且其准确性也存在问题。At present, the detection of TPSB in the market still uses enzyme-linked immunosorbent assay (enzyme linked immunosorbent assay, ELISA) kit to detect its content in body fluids, and there is no commercial kit for detecting TPSB mRNA. The ELISA method has the problems of small detection range and low sensitivity in the detection process, and its accuracy also has problems.

发明内容Contents of the invention

本发明的目的在于提供一种人β-类胰蛋白酶mRNA RT-PCR检测用引物探针组和试剂盒。本发明针对人TPSB建立的TaqMan实时荧光定量一步法RT-PCR检测引物探针组,为该蛋白的检出提供准确度高、检测范围广及灵敏度高的检测手段。The object of the present invention is to provide a kind of primer probe group and kit for human β-tryptase mRNA RT-PCR detection. The invention aims at the TaqMan real-time fluorescence quantitative one-step RT-PCR detection primer probe set established for human TPSB, and provides a detection means with high accuracy, wide detection range and high sensitivity for the detection of the protein.

本发明提供了一种人β-类胰蛋白酶mRNA RT-PCR检测用引物探针 组,所述引物探针组包括引物TPSB-F、引物TPSB-R和探针T-Probe,所述引物TPSB-F的核苷酸序列如SEQ ID NO.1所示,所述引物TPSB-R的核苷酸序列如SEQ ID NO.2所示,所述探针T-Probe的核苷酸序列如SEQ ID NO.3所示。The invention provides a primer probe set for human β-tryptase mRNA RT-PCR detection, the primer probe set includes primer TPSB-F, primer TPSB-R and probe T-Probe, the primer TPSB The nucleotide sequence of -F is as shown in SEQ ID NO.1, the nucleotide sequence of described primer TPSB-R is as shown in SEQ ID NO.2, and the nucleotide sequence of described probe T-Probe is as shown in SEQ ID NO.2 ID NO.3 is shown.

优选的是,所述探针T-Probe的5'端标记荧光报告基团,3'端标记淬灭基团。Preferably, the 5' end of the probe T-Probe is labeled with a fluorescent reporter group, and the 3' end is labeled with a quencher group.

优选的是,还包括内参基因的引物GAPDH-F、引物GAPDH-R和探针G-Probe,所述引物GAPDH-F的核苷酸序列如SEQ ID NO.4所示,所述引物GAPDH-R的核苷酸序列如SEQ ID NO.5所示,所述探针G-Probe的核苷酸序列如SEQ ID NO.6所示。Preferably, primer GAPDH-F, primer GAPDH-R and probe G-Probe of the internal reference gene are also included, the nucleotide sequence of the primer GAPDH-F is shown in SEQ ID NO.4, and the primer GAPDH- The nucleotide sequence of R is shown in SEQ ID NO.5, and the nucleotide sequence of the probe G-Probe is shown in SEQ ID NO.6.

优选的是,所述探针G-Probe的5'端标记荧光报告基团,3'端标记淬灭基团;探针G-Probe标记的荧光报告基团与探针T-Probe标记的荧光报告基团不同。Preferably, the 5' end of the probe G-Probe is labeled with a fluorescent reporter group, and the 3' end is labeled with a quencher group; the fluorescent reporter group labeled with the probe G-Probe and the fluorescent reporter group labeled with the probe T-Probe Reporting groups are different.

优选的是,所述荧光报告基团包括FAM或JOE,所述淬灭基团包括BHQ1。Preferably, the fluorescent reporter group includes FAM or JOE, and the quencher group includes BHQ1.

本发明还提供了一种人β-类胰蛋白酶mRNA RT-PCR检测用试剂盒,所述试剂盒包括上述技术方案所述引物探针组、PCR反应液、酶混合液、β-类胰蛋白酶标准品、ROX参比染料和无核酶水。The present invention also provides a kit for human β-tryptase mRNA RT-PCR detection, said kit comprising the primer probe set described in the technical scheme, PCR reaction solution, enzyme mixture, β-tryptase Standards, ROX reference dye, and nuclease-free water.

优选的是,所述PCR反应液包括dNTP mix、MgCl 2和缓冲液。 Preferably, the PCR reaction solution includes dNTP mix, MgCl 2 and buffer.

优选的是,所述酶混合液包括Taq酶、逆转录酶、RNA酶抑制剂和Taq酶抗体。Preferably, the enzyme mixture comprises Taq enzyme, reverse transcriptase, RNase inhibitor and Taq enzyme antibody.

本发明还提供了上述技术方案所述试剂盒的使用方法,包括以下步骤:将引物探针组、PCR反应液、酶混合液、标准品或待测样品、ROX参比染料和无核酶水混合后,进行荧光定量扩增。The present invention also provides a method for using the kit described in the above technical scheme, comprising the steps of: mixing primer probe set, PCR reaction solution, enzyme mixture, standard or sample to be tested, ROX reference dye and nuclease-free water After mixing, fluorescent quantitative amplification is performed.

优选的是,以20μL计,所述试剂盒的反应体系包括:引物探针组2μL、PCR反应液10μL、酶混合液0.5μL、ROX参比染料0.1μL、标准品或待测样品5μL和无核酶水2.4μL;所述荧光定量扩增的条件为:42℃30min;95℃1min;95℃5s,60℃31s,扩增40个循环。Preferably, in terms of 20 μL, the reaction system of the kit includes: 2 μL of primer probe set, 10 μL of PCR reaction solution, 0.5 μL of enzyme mixture, 0.1 μL of ROX reference dye, 5 μL of standard or test sample and no 2.4 μL of ribozyme water; the conditions of the fluorescent quantitative amplification are: 42°C for 30 min; 95°C for 1 min; 95°C for 5 s, 60°C for 31 s, and 40 cycles of amplification.

本发明提供了一种人β-类胰蛋白酶mRNA RT-PCR检测用引物探针组。与免疫学检测方法相比,本发明所述引物探针组用于检测时,灵敏度高,可以检测低浓度(10copies/μL)的临床样本,能够更灵敏地探测到TPSB的含量变化,检测范围可跨越至少6个数量级,增加了检测结果的准确性,从而更早期、更准确、更快速地对治疗效果进行动态监测和疗效评估。The invention provides a primer probe set for human β-tryptase mRNA RT-PCR detection. Compared with the immunological detection method, when the primer probe set of the present invention is used for detection, it has high sensitivity, can detect low concentration (10copies/μL) clinical samples, and can more sensitively detect changes in the content of TPSB. It can span at least 6 orders of magnitude, increasing the accuracy of the detection results, so that the dynamic monitoring and curative effect evaluation of the treatment effect can be performed earlier, more accurately and faster.

说明书附图Instructions attached

图1为本发明提供的稀释操作过程图;Fig. 1 is the dilution operation process diagram that the present invention provides;

图2为本发明提供的TPSB mRNA TaqMan实时荧光定量RT-PCR标准曲线;Fig. 2 is the TPSB mRNA TaqMan real-time fluorescence quantitative RT-PCR standard curve provided by the present invention;

图3为本发明提供的精密度检测结果图,其中1:1.0×10 6copies/μL,2:1.0×10 3copies/μL; Figure 3 is a graph of the precision test results provided by the present invention, in which 1: 1.0×10 6 copies/μL, 2: 1.0×10 3 copies/μL;

图4为本发明提供的准确度检测结果图;Fig. 4 is the accuracy detection result figure that the present invention provides;

图5为本发明提供的灵敏度检测结果图;Fig. 5 is the sensitivity detection result figure provided by the present invention;

图6为本发明提供的临床样本检测结果图;其中1:阳性样本5GAPDH mRNA;2:健康对照3 GAPDH mRNA;3:阳性样本5 TPSB mRNA;4:健康对照3 TPSB mRNA;5:空白对照NTC-GAPDH mRNA;6:空白对照NTC-TPSB mRNA;Figure 6 is a diagram of the detection results of clinical samples provided by the present invention; wherein 1: positive sample 5GAPDH mRNA; 2: healthy control 3 GAPDH mRNA; 3: positive sample 5 TPSB mRNA; 4: healthy control 3 TPSB mRNA; 5: blank control NTC -GAPDH mRNA; 6: blank control NTC-TPSB mRNA;

图7为本发明提供的在引物、探针非最佳设计的情况下,低值精密度扩增曲线图;Fig. 7 is provided by the present invention under the situation that primer, probe are not optimally designed, low value precision amplification curve;

图8为本发明提供的非最佳配比的酶混合液和最佳配比的酶混合液扩增结果。Fig. 8 shows the amplification results of the non-optimal ratio enzyme mixture solution and the optimal ratio enzyme mixture solution provided by the present invention.

具体实施方式Detailed ways

本发明提供了一种人β-类胰蛋白酶mRNA RT-PCR检测用引物探针组,所述引物探针组包括引物TPSB-F、引物TPSB-R和探针T-Probe,所述引物TPSB-F的核苷酸序列如SEQ ID NO.1所示:5'-CAGCGAGTGGGCATCGTT-3',所述引物TPSB-R的核苷酸序列如SEQ ID NO.2所示:5'-ATCCTTGACGTCCGGTCCC-3',所述探针T-Probe的核苷酸序列如SEQ ID NO.3所示: 5'-AGCCTGAGAGTCCGCGACCGAT-3'。The invention provides a primer probe set for human β-tryptase mRNA RT-PCR detection, the primer probe set includes primer TPSB-F, primer TPSB-R and probe T-Probe, the primer TPSB The nucleotide sequence of -F is as shown in SEQ ID NO.1: 5'-CAGCGAGTGGGCATCGTT-3', and the nucleotide sequence of the primer TPSB-R is as shown in SEQ ID NO.2: 5'-ATCCTTGACGTCCGGTCCC-3 ', the nucleotide sequence of the probe T-Probe is shown in SEQ ID NO.3: 5'-AGCCTGAGAGTCCGCGACCGAT-3'.

在本发明中,所述探针T-Probe的5'端标记荧光报告基团,3'端标记淬灭基团。在本发明中,所述荧光报告基团优选包括FAM或JOE,所述淬灭基团优选包括BHQ1。在本发明实施例中,所述探针T-Probe的5'端标记FAM荧光报告基团,3'端标记BHQ1淬灭基团。In the present invention, the 5' end of the probe T-Probe is labeled with a fluorescent reporter group, and the 3' end is labeled with a quenching group. In the present invention, the fluorescent reporter group preferably includes FAM or JOE, and the quencher group preferably includes BHQ1. In the embodiment of the present invention, the 5' end of the probe T-Probe is labeled with a FAM fluorescent reporter group, and the 3' end is labeled with a BHQ1 quencher group.

在本发明中,所述引物探针组还包括内参基因的引物GAPDH-F、引物GAPDH-R和探针G-Probe,所述引物GAPDH-F的核苷酸序列如SEQ ID NO.4所示:5'-GACAACAGCCTCAAGATCATC-3',所述引物GAPDH-R的核苷酸序列如SEQ ID NO.5所示:5'-CGCCACAGTTTCCCGGAG-3',所述探针G-Probe的核苷酸序列如SEQ ID NO.6所示:5'-ACTCATGACCACAGTCCATGCCAT-3'。在本发明中,所述探针G-Probe的5'端标记荧光报告基团,3'端标记淬灭基团;探针G-Probe标记的荧光报告基团与探针T-Probe标记的荧光报告基团优选不同。在本发明中,所述荧光报告基团优选包括FAM或JOE,所述淬灭基团优选包括BHQ1。在本发明实施例中,所述探针G-Probe的5'端标记JOE荧光报告基团,3'端标记BHQ1淬灭基团。In the present invention, the primer probe set also includes primer GAPDH-F, primer GAPDH-R and probe G-Probe of the internal reference gene, and the nucleotide sequence of the primer GAPDH-F is as shown in SEQ ID NO.4 Shown: 5'-GACAACAGCCTCAAGATCATC-3', the nucleotide sequence of the primer GAPDH-R is shown in SEQ ID NO.5: 5'-CGCCACAGTTTCCCGGAG-3', the nucleotide sequence of the probe G-Probe As shown in SEQ ID NO.6: 5'-ACTCATGACCACAGTCCATGCCAT-3'. In the present invention, the 5' end of the probe G-Probe is labeled with a fluorescent reporter group, and the 3' end is labeled with a quencher group; the fluorescent reporter group labeled with the probe G-Probe and the probe T-Probe labeled The fluorescent reporter groups are preferably different. In the present invention, the fluorescent reporter group preferably includes FAM or JOE, and the quencher group preferably includes BHQ1. In the embodiment of the present invention, the 5' end of the probe G-Probe is labeled with the JOE fluorescent reporter group, and the 3' end is labeled with the BHQ1 quencher group.

本发明还提供了一种人β-类胰蛋白酶mRNA RT-PCR检测用试剂盒,所述试剂盒包括上述技术方案所述引物探针组、PCR反应液、酶混合液、β-类胰蛋白酶标准品、ROX参比染料和无核酶水。The present invention also provides a kit for human β-tryptase mRNA RT-PCR detection, said kit comprising the primer probe set described in the technical scheme, PCR reaction solution, enzyme mixture, β-tryptase Standards, ROX reference dye, and nuclease-free water.

在本发明中,所述PCR反应液包括dNTP mix、MgCl 2和缓冲液;所述dNTP mix为脱氧核糖核苷三磷酸,包括dATP,dCTP,dGTP和dTTP,本发明所述dNTP mix优选购自ThermoFisher公司(货号:R0192),工作浓度优选为0.1~1mM。在本发明中,MgCl 2的使用浓度优选为5~20mM;缓冲液优选为Tris-HCl缓冲液,更优选为10~50mM Tris-HCl缓冲液,所述Tris-HCl缓冲液的pH值优选为8.0。 In the present invention, the PCR reaction solution includes dNTP mix, MgCl 2 and buffer; the dNTP mix is deoxyribonucleoside triphosphate, including dATP, dCTP, dGTP and dTTP, and the dNTP mix of the present invention is preferably purchased Available from ThermoFisher (Cat. No. R0192), the working concentration is preferably 0.1-1 mM. In the present invention, the use concentration of MgCl2 is preferably 5~20mM; The buffer solution is preferably a Tris-HCl buffer solution, more preferably 10~50mM Tris-HCl buffer solution, and the pH value of the Tris-HCl buffer solution is preferably 8.0.

在本发明中,所述酶混合液包括Taq酶、逆转录酶、RNA酶抑制剂和Taq酶抗体。在本发明中,所述酶混合液中,Taq酶、逆转录酶、RNA酶抑制剂和Taq酶抗体的体积比优选为14:5:5:1,此比例能够获得最佳的 扩增效果。在本发明中,Taq酶为耐热的Taq DNA聚合酶,利用其3'→5'聚合酶活性以DNA为模板,将dNTP中的脱氧单核苷酸逐个加到3-OH末端;同时利用其5'→3'外切酶活性即能识别和消除错配的引物末端,与复制过程中校正功能有关,又可以从5'端水解核苷酸,还能经过几个核苷酸起作用,切除错配的核苷酸,由此在链延伸过程中实现链替换,并将被替换的探针切断;逆转录酶可将mRNA逆转录成cDNA以进行PCR反应;RNA酶抑制剂用来抑制外源性RNase的活性;Taq酶抗体是热启动PCR用抗Taq抗体,其与Taq酶结合后抑制DNA聚合酶活性,能够在低温条件下有效抑制引物的非特异性退火及引物二聚体引起的非特异性扩增,Taq酶抗体在PCR反应最初的DNA变性步骤中变性,Taq酶恢复活性,实现PCR扩增。In the present invention, the enzyme mixture includes Taq enzyme, reverse transcriptase, RNase inhibitor and Taq enzyme antibody. In the present invention, in the enzyme mixture, the volume ratio of Taq enzyme, reverse transcriptase, RNase inhibitor and Taq enzyme antibody is preferably 14:5:5:1, and this ratio can obtain the best amplification effect . In the present invention, Taq enzyme is a heat-resistant Taq DNA polymerase, utilizes its 3'→5' polymerase activity to use DNA as a template, and deoxygenated mononucleotides in dNTPs are added to the 3-OH end one by one; Its 5'→3' exonuclease activity can recognize and eliminate mismatched primer ends, which is related to the correction function during the replication process, and can also hydrolyze nucleotides from the 5' end, and can also work through several nucleotides , to excise mismatched nucleotides, thereby realizing strand replacement during chain elongation, and cutting off the replaced probe; reverse transcriptase can reverse transcribe mRNA into cDNA for PCR reaction; RNase inhibitor is used to Inhibit the activity of exogenous RNase; Taq enzyme antibody is an anti-Taq antibody for hot-start PCR, which inhibits the activity of DNA polymerase after binding with Taq enzyme, and can effectively inhibit the non-specific annealing of primers and primer dimer at low temperature. The non-specific amplification of the Taq enzyme antibody is denatured in the initial DNA denaturation step of the PCR reaction, and the Taq enzyme restores its activity to achieve PCR amplification.

在本发明中,所述β-类胰蛋白酶标准品优选为β-类胰蛋白酶的mRNA标准品,用于配制定量曲线。In the present invention, the β-tryptase standard product is preferably a β-tryptase mRNA standard product, which is used to prepare a quantitative curve.

本发明还提供了上述技术方案所述试剂盒的使用方法,包括以下步骤:将引物探针组、PCR反应液、酶混合液、标准品或待测样品、ROX参比染料和无核酶水混合后,进行荧光定量扩增。在本发明中,本发明所述试剂盒采用一步法RT-PCR技术定量检测方法,能够检测人血液、鼻腔分泌物、支气管冲洗液、唾液、泪液样本中TPSB mRNA的表达水平。The present invention also provides a method for using the kit described in the above technical scheme, comprising the steps of: mixing primer probe set, PCR reaction solution, enzyme mixture, standard or sample to be tested, ROX reference dye and nuclease-free water After mixing, fluorescent quantitative amplification is performed. In the present invention, the kit of the present invention adopts a one-step RT-PCR quantitative detection method, which can detect the expression level of TPSB mRNA in human blood, nasal secretion, bronchial flushing fluid, saliva, and tear fluid samples.

在本发明中,所述试剂盒的反应体系,以20μL计,优选包括:引物探针组2μL、PCR反应液10μL、酶混合液0.5μL、ROX参比染料0.1μL、标准品或待测样品5μL和无核酶水2.4μL。在本发明中,所述荧光定量扩增的条件优选为:42℃30min(逆转录);95℃1min(预变性);95℃5s,60℃31s,扩增40个循环。In the present invention, the reaction system of the kit, in terms of 20 μL, preferably includes: 2 μL of primer probe set, 10 μL of PCR reaction solution, 0.5 μL of enzyme mixture, 0.1 μL of ROX reference dye, standard or test sample 5 μL and 2.4 μL of nuclease-free water. In the present invention, the conditions for the fluorescent quantitative amplification are preferably: 42°C for 30 min (reverse transcription); 95°C for 1 min (pre-denaturation); 95°C for 5 s, 60°C for 31 s, and 40 cycles of amplification.

下面结合具体实施例对本发明所述的一种人β-类胰蛋白酶mRNA RT-PCR检测用引物探针组和试剂盒做进一步详细的介绍,本发明的技术方案包括但不限于以下实施例。A kind of human β-tryptase mRNA RT-PCR detection primer probe set and kit described in the present invention are described in further detail below in conjunction with specific examples. The technical solutions of the present invention include but are not limited to the following examples.

下述实施例中的实验方法,如无特殊说明,均为常规方法,按照本领域内的文献所描述的技术或条件或者按照产品说明书进行。下述实施例中 所用的材料、试剂等,如无特殊说明,均可从商业途径得到The experimental methods in the following examples, unless otherwise specified, are conventional methods, carried out according to the techniques or conditions described in the literature in this field or according to the product instructions. Materials, reagents, etc. used in the following examples, if no special instructions, can be obtained from commercial sources

实施例1Example 1

1.所涉及试剂及设备如下:1. The reagents and equipment involved are as follows:

1.1试剂1.1 Reagents

1.1.1全血总RNA试剂盒(杭州新景生物试剂开发有限公司,货号:5201050)1.1.1 Whole blood total RNA kit (Hangzhou Xinjing Biological Reagent Development Co., Ltd., catalog number: 5201050)

1.1.2 HiScribe T7 High Yield RNA Synthesis Kit(New England Biolabs,货号:E2050S)1.1.2 HiScribe T7 High Yield RNA Synthesis Kit (New England Biolabs, Cat. No.: E2050S)

1.2主要仪器1.2 Main instruments

1.2.1 Applied Biosystems TM7300荧光定量PCR仪:ThermoFisher,美国 1.2.1 Applied Biosystems TM 7300 fluorescence quantitative PCR instrument: ThermoFisher, USA

1.2.2 -80℃低温冰箱:ThermoFisher,美国1.2.2 -80℃ low temperature refrigerator: ThermoFisher, USA

1.2.3高速低温台式离心机:Eppendorf,德国1.2.3 High-speed and low-temperature desktop centrifuge: Eppendorf, Germany

1.2.4 Qubit 3荧光计:ThermoFisher,美国1.2.4 Qubit 3 Fluorometer: ThermoFisher, USA

2.方法2. Method

2.1引物和探针设计2.1 Primer and probe design

根据TPSB和GAPDH序列,利用Primer 6.0软件,设计荧光定量引物和探针,经过系列效果验证,获得了TPSB和GAPDH的引物对TPSB-F、TPSB-R、GAPDH-F、GAPDH-R和探针T-Probe、G-Probe(见表1)。引物、探针由上海桑尼生物科技有限公司合成。According to the sequence of TPSB and GAPDH, use Primer 6.0 software to design fluorescent quantitative primers and probes. After a series of effect verification, the primer pairs TPSB-F, TPSB-R, GAPDH-F, GAPDH-R and probes of TPSB and GAPDH were obtained. T-Probe, G-Probe (see Table 1). Primers and probes were synthesized by Shanghai Sunny Biotechnology Co., Ltd.

表1 TaqMan实时荧光定量PCR引物探针Table 1 TaqMan real-time fluorescent quantitative PCR primer probe

Figure PCTCN2021110520-appb-000001
Figure PCTCN2021110520-appb-000001

2.2标准品制备2.2 Standard preparation

体外转录。采用pGM-T连接试剂盒[天根生化科技(北京)有限公司,货号:VT202-01],以pGM-T为载体构建TPSB质粒DNA(委托南京金斯瑞生物科技有限公司构建及合成),将TPSB质粒DNA用HiScribe T7 High Yield RNA Synthesis Kit(NEW ENGLAND BioLabs公司生产,货号:E2040S)体外转录成mRNA。In vitro transcription. Using pGM-T ligation kit [Tiangen Biochemical Technology (Beijing) Co., Ltd., article number: VT202-01], using pGM-T as the carrier to construct TPSB plasmid DNA (entrusted to Nanjing GenScript Biotechnology Co., Ltd. to construct and synthesize), TPSB plasmid DNA was transcribed into mRNA in vitro with HiScribe T7 High Yield RNA Synthesis Kit (produced by NEW ENGLAND BioLabs, Cat. No.: E2040S).

根据拷贝数计算公式:拷贝数=[6.02×10 23×RNA浓度(ng/μL)×10 -9]/[RNA长度(bp)×340],计算RNA初始拷贝数。用无核酶水稀释至1.0×10 9copies/μL,即为TPSB标准品。 According to the copy number calculation formula: copy number=[6.02×10 23 ×RNA concentration (ng/μL)×10 -9 ]/[RNA length (bp)×340], calculate the initial RNA copy number. Dilute with nuclease-free water to 1.0×10 9 copies/μL, which is the TPSB standard.

2.3全血RNA提取及稀释:EDTA抗凝全血样本用全血总RNA试剂盒提取全血总RNA,采用Qubit 3荧光计定量后,用无核酶水稀释至20ng/μL。2.3 Whole blood RNA extraction and dilution: EDTA anticoagulated whole blood samples were extracted with a whole blood total RNA kit, quantified with a Qubit 3 fluorometer, and then diluted to 20 ng/μL with nuclease-free water.

2.4 TaqMan实时荧光定量PCR2.4 TaqMan real-time fluorescence quantitative PCR

以标准品或全血RNA为模板,配制20μL体系如表2所示:Using the standard or whole blood RNA as a template, prepare a 20 μL system as shown in Table 2:

表2 20μL反应体系Table 2 20μL reaction system

Figure PCTCN2021110520-appb-000002
Figure PCTCN2021110520-appb-000002

扩增反应程序如表3所示:The amplification reaction program is shown in Table 3:

表3 扩增反应程序Table 3 Amplification reaction program

Figure PCTCN2021110520-appb-000003
Figure PCTCN2021110520-appb-000003

2.5标准曲线的生成2.5 Generation of standard curve

将TPSB标准品按10倍梯度进行稀释,选择1.0×10 7~1.0×10 2copies/μL作为模板,每个稀释度2个重复,进行TaqMan实时荧光定量RT-PCR检测,生成标准曲线。稀释操作过程如图1所示,以50μL/管为例,每次稀释的过程,取5μL稀释前样品,加入到含有45μL水的新管中。 The TPSB standard was diluted in a 10-fold gradient, and 1.0×10 7 to 1.0×10 2 copies/μL was selected as a template, and each dilution was replicated twice for TaqMan real-time fluorescent quantitative RT-PCR detection to generate a standard curve. The dilution operation process is shown in Figure 1, taking 50 μL/tube as an example, during each dilution process, take 5 μL of the sample before dilution and add it to a new tube containing 45 μL of water.

2.6精密度检测2.6 Precision testing

选择1.0×10 6copies/μL、1.0×10 3copies/μL的标准品作为模板,每个浓度10个重复量,进行10次TaqMan实时荧光定量RT-PCR检测,分别计算每个浓度对数值的变异系数进行统计学分析,分析该检测方法的精密度。 Select 1.0×10 6 copies/μL, 1.0×10 3 copies/μL standard as template, 10 replicates for each concentration, and perform 10 TaqMan real-time fluorescence quantitative RT-PCR detection, and calculate the logarithmic value of each concentration The coefficient of variation was statistically analyzed to analyze the precision of the detection method.

2.7准确度检测2.7 Accuracy detection

选择1.0×10 5copies/μL标准品作为模板,3个重复量,进行3次TaqMan实时荧光定量RT-PCR检测,计算每个浓度对数值的绝对偏差,分析该检测方法的准确度。 Select 1.0×10 5 copies/μL standard as a template, and perform 3 times of TaqMan real-time fluorescence quantitative RT-PCR detection with 3 repetitions, calculate the absolute deviation of the logarithmic value of each concentration, and analyze the accuracy of the detection method.

2.8灵敏度检测2.8 Sensitivity detection

选择10.0copies/μL标准品作为模板,25个重复量,进行25次TaqMan实时荧光定量RT-PCR检测,查看是否有扩增抬头,分析该检测方法的灵敏度。Choose 10.0copies/μL standard as the template, 25 repetitions, and perform 25 TaqMan real-time fluorescent quantitative RT-PCR detections to check whether there is any amplification and analyze the sensitivity of the detection method.

2.10临床样本检测2.10 Clinical sample testing

取阳性样本和健康对照全血样本按照2.3步骤进行全血RNA提取和稀释,按照2.4步骤进行TaqMan实时荧光定量RT-PCR检测。Take positive samples and healthy control whole blood samples for whole blood RNA extraction and dilution according to step 2.3, and perform TaqMan real-time fluorescent quantitative RT-PCR detection according to step 2.4.

3.实验结果3. Experimental results

3.1标准曲线3.1 Standard curve

将TPSB标准品按10倍梯度进行稀释,选择1.0×10 7~1.0×10 2copies/μL作为模板,每个稀释度2个重复,进行TaqMan实时荧光定量RT-PCR检测,生成标准曲线,TPSB mRNA TaqMan实时荧光定量RT-PCR标准曲线如图2所示。以拷贝数对数值为横坐标,Ct值为纵坐标,得到回归方程式:y=-3.46x+38.261(R 2=0.996),该回归方程的R 2=0.996,线性范围为1.0×10 2~1.0×10 7copies/μL。说明标准方程的拷贝数对数值与Ct值具有极高的相关性。 Dilute the TPSB standard product according to a 10-fold gradient, select 1.0×10 7 ~1.0×10 2 copies/μL as the template, and perform 2 replicates for each dilution, perform TaqMan real-time fluorescent quantitative RT-PCR detection, and generate a standard curve, TPSB The mRNA TaqMan real-time fluorescent quantitative RT-PCR standard curve is shown in Figure 2. Taking the copy number logarithmic value as the abscissa and the Ct value as the ordinate, the regression equation is obtained: y=-3.46x+38.261 (R 2 =0.996), the R 2 of the regression equation is 0.996, and the linear range is 1.0×10 2 ~ 1.0×10 7 copies/μL. It shows that the copy number logarithmic value of the standard equation has a very high correlation with the Ct value.

3.2精密度检测3.2 Precision testing

选择1.0×10 6copies/μL、1.0×10 3copies/μL的标准品作为模板,每个浓度10个重复量,进行10次TaqMan实时荧光定量RT-PCR检测,分别计算每个浓度对数值的变异系数进行统计学分析。精密度检测结果如表4和图3所示,结果显示,每个浓度对数值的变异系数分别为0.765%、 2.547%,小于5%,表明本发明建立的TaqMan实时荧光定量RT-PCR检测方法具有极好的精密度。 Select 1.0×10 6 copies/μL, 1.0×10 3 copies/μL standard as template, 10 replicates for each concentration, and perform 10 TaqMan real-time fluorescence quantitative RT-PCR detection, and calculate the logarithmic value of each concentration The coefficient of variation was used for statistical analysis. Precision detection result is as shown in table 4 and Fig. 3, and the result shows that the coefficient of variation of each concentration logarithmic value is respectively 0.765%, 2.547%, less than 5%, shows that the TaqMan real-time fluorescent quantitative RT-PCR detection method that the present invention establishes Has excellent precision.

表4 精密度检测结果Table 4 Precision test results

理论拷贝数theoretical copy number 拷贝数对数值均值copy number log mean SDSD C.VC.V. 1.0×10 6 1.0×10 6 5.9345.934 0.0450.045 0.765%0.765% 1.0×10 3 1.0×10 3 2.9162.916 0.0740.074 2.547%2.547%

3.3准确度检测3.3 Accuracy detection

选择1.0×10 5copies/μL标准品作为模板,3个重复量,进行3次TaqMan实时荧光定量RT-PCR检测,计算每个浓度对数值的绝对偏差。结果如图4和表5所示,结果显示,每个浓度对数值的绝对偏差分别为-0.115、-0.079、-0.103,在±0.5范围内,表明本发明建立的TaqMan实时荧光定量RT-PCR检测方法具有极好的准确度。 Select 1.0×10 5 copies/μL standard as a template, and perform 3 repetitions of TaqMan real-time fluorescent quantitative RT-PCR detection, and calculate the absolute deviation of the logarithmic value of each concentration. The results are shown in Figure 4 and Table 5, and the results show that the absolute deviations of each concentration logarithmic value are respectively -0.115, -0.079, -0.103, within the scope of ± 0.5, showing that the TaqMan real-time fluorescent quantitative RT-PCR established by the present invention The detection method has excellent accuracy.

表5 准确度检测结果Table 5 Accuracy test results

Figure PCTCN2021110520-appb-000004
Figure PCTCN2021110520-appb-000004

3.4灵敏度检测3.4 Sensitivity detection

选择10.0copies/μL标准品作为模板,25个重复量,进行25次TaqMan实时荧光定量RT-PCR检测,查看是否有扩增抬头。灵敏度检测结果如表6和图5所示,结果显示,共计25次检测出结果,达100%,表明本发明建立的TaqMan实时荧光定量RT-PCR检测方法具有很高的灵敏度,最低检出拷贝数<10copies/μL。Select 10.0copies/μL standard as a template, 25 replicates, and perform 25 TaqMan real-time fluorescent quantitative RT-PCR tests to check whether there is any amplification. Sensitivity detection results are shown in Table 6 and Figure 5, the results show that a total of 25 detection results, up to 100%, show that the TaqMan real-time fluorescent quantitative RT-PCR detection method established by the present invention has very high sensitivity, the lowest detection copy Count <10copies/μL.

表6 灵敏度检测Ct值结果Table 6 Sensitivity detection Ct value results

33.11233.112 33.65533.655 34.99634.996 33.37433.374 33.07233.072 35.01935.019 33.43233.432 34.86434.864 35.83035.830 34.68034.680 33.49533.495 37.11837.118 33.54233.542 33.17233.172 34.85534.855 33.88333.883 34.70434.704 34.88334.883 34.50934.509 33.57933.579 37.45537.455 33.02733.027 34.57234.572 32.98232.982 33.33433.334

3.5临床样本检测3.5 Clinical sample testing

本发明和国外应用较广的ImmunCAP TM TPSB试剂比对结果如表7和图6所示: The results of the comparison between the present invention and the widely used ImmunCAP TM TPSB reagent abroad are shown in Table 7 and Figure 6:

表7 比对结果Table 7 comparison results

Figure PCTCN2021110520-appb-000005
Figure PCTCN2021110520-appb-000005

本发明采用全血RNA进行检测,ImmunCAP TM TPSB试剂采用血清进行检测。 The present invention uses whole blood RNA for detection, and the ImmunCAP TM TPSB reagent uses serum for detection.

以上结果表明本发明建立的TaqMan实时荧光定量RT-PCR检测方法具有较高的特异性,同时比进口荧光酶免法试剂更好的灵敏度。The above results show that the TaqMan real-time fluorescent quantitative RT-PCR detection method established by the present invention has higher specificity and better sensitivity than imported fluorescent enzyme immunoassay reagents.

对比例1Comparative example 1

采用其它非最佳引物、探针进行扩增的结果Amplification results using other non-optimal primers and probes

将本发明所用体系中的引物、探针替换成其它非最佳引物、探针。扩增体系、程序与实施例1相同。结果如图7,在采用非最佳的TPSB引物、探针,如:The primers and probes in the system used in the present invention are replaced with other non-optimal primers and probes. The amplification system and procedure are the same as in Example 1. The results are shown in Figure 7, when non-optimal TPSB primers and probes are used, such as:

TPSB-F:TGCAGCGAGTGGGCATCGT(SEQ ID NO.7);TPSB-F: TGCAGCGAGTGGGCATCGT (SEQ ID NO. 7);

TPSB-R:TCTGGGCGGTGTAGAACTGT(SEQ ID NO.8);TPSB-R: TCTGGGCGGTGTAGAACTGT (SEQ ID NO. 8);

T-Probe:(FAM)-CACTTCTGCGGGGGCTCCCTC(SEQ ID NO.9)-(BHQ1)。T-Probe: (FAM)-CACTTCTGCGGGGGCTCCCTC (SEQ ID NO. 9)-(BHQ1).

低值精密度的浓度对数值的变异系数结果超出5%,达10.267%。The coefficient of variation of the concentration logarithmic value of the low-value precision exceeds 5%, reaching 10.267%.

表8 非最佳引物、探针低值精密度的浓度对数值的变异系数结果Table 8 The coefficient of variation results of the concentration logarithmic value of non-optimal primers and probes with low precision

理论拷贝数theoretical copy number 拷贝数对数值均值copy number log mean SDSD C.VC.V.

1.0×10 3 1.0×10 3 2.5042.504 0.2570.257 10.267%10.267%

对比例2Comparative example 2

酶混合液效果比较Enzyme mixture effect comparison

用非最佳配比的酶混合液(Taq酶、逆转录酶、RNA酶抑制剂和Taq酶抗体的体积比为11:4:3:1)和最佳配比的酶混合液分别扩增3例全血RNA样本,扩增用引物和探针、扩增体系、程序与实施例1相同。结果如图8所示,采用非最佳的酶混合液配比的扩增结果如图8中的A所示,采用最佳的酶混合液配比的扩增结果如图8中的B所示。不同配比的酶混合液浓度会影响样本的扩增效果,扩增效果不佳的就会导致所测得的最终浓度结果有偏差、不准确。所以要采用最佳配比的酶混合液。两者(非最佳配比的酶混合液和最佳配比的酶混合液)相比之下,非最佳的酶混合液配比的扩增结果的Ct值相对延后3个循环数以上,且最佳的酶混合液配比下同一样本的重复结果更具一致性,相差更小。可见最佳酶混合液的扩增效果均较好。Amplify with a non-optimal ratio of enzyme mixture (the volume ratio of Taq enzyme, reverse transcriptase, RNase inhibitor and Taq enzyme antibody is 11:4:3:1) and an optimal ratio of enzyme mixture For 3 whole blood RNA samples, primers and probes for amplification, amplification system, and procedures were the same as in Example 1. The result is shown in Figure 8, the amplification result using the non-optimal enzyme mixture ratio is shown in A in Figure 8, and the amplification result using the best enzyme mixture ratio is shown in Figure 8 B Show. The concentration of the enzyme mixture in different proportions will affect the amplification effect of the sample, and the poor amplification effect will lead to deviation and inaccuracy in the measured final concentration results. Therefore, the optimal ratio of enzyme mixture should be used. Compared with the two (non-optimal ratio of enzyme mixture and optimal ratio of enzyme mixture), the Ct value of the amplification result of the non-optimal ratio of enzyme mixture is relatively delayed by 3 cycles The above, and the repeated results of the same sample under the optimal enzyme mixture ratio are more consistent and the difference is smaller. It can be seen that the amplification effect of the best enzyme mixture is better.

以上所述仅是本发明的优选实施方式,应当指出,对于本技术领域的普通技术人员来说,在不脱离本发明原理的前提下,还可以做出若干改进和润饰,这些改进和润饰也应视为本发明的保护范围。The above is only a preferred embodiment of the present invention, it should be pointed out that, for those of ordinary skill in the art, without departing from the principle of the present invention, some improvements and modifications can also be made, and these improvements and modifications can also be made. It should be regarded as the protection scope of the present invention.

Claims (13)

一种人β-类胰蛋白酶mRNA RT-PCR检测用引物探针组,其特征在于,所述引物探针组包括引物TPSB-F、引物TPSB-R和探针T-Probe,所述引物TPSB-F的核苷酸序列如SEQ ID NO.1所示,所述引物TPSB-R的核苷酸序列如SEQ ID NO.2所示,所述探针T-Probe的核苷酸序列如SEQ ID NO.3所示。A kind of human β-tryptase mRNA RT-PCR detects primer probe group, it is characterized in that, described primer probe group comprises primer TPSB-F, primer TPSB-R and probe T-Probe, and described primer TPSB The nucleotide sequence of -F is as shown in SEQ ID NO.1, the nucleotide sequence of described primer TPSB-R is as shown in SEQ ID NO.2, and the nucleotide sequence of described probe T-Probe is as shown in SEQ ID NO.2 ID NO.3 is shown. 根据权利要求1所述的引物探针组,其特征在于,所述探针T-Probe的5'端标记荧光报告基团,3'端标记淬灭基团。The primer-probe set according to claim 1, wherein the 5' end of the probe T-Probe is labeled with a fluorescent reporter group, and the 3' end is labeled with a quencher group. 根据权利要求1所述的引物探针组,其特征在于,还包括内参基因的引物GAPDH-F、引物GAPDH-R和探针G-Probe,所述引物GAPDH-F的核苷酸序列如SEQ ID NO.4所示,所述引物GAPDH-R的核苷酸序列如SEQ ID NO.5所示,所述探针G-Probe的核苷酸序列如SEQ ID NO.6所示。The primer probe group according to claim 1, is characterized in that, also comprises the primer GAPDH-F of internal reference gene, primer GAPDH-R and probe G-Probe, the nucleotide sequence of described primer GAPDH-F is as SEQ As shown in ID NO.4, the nucleotide sequence of the primer GAPDH-R is shown in SEQ ID NO.5, and the nucleotide sequence of the probe G-Probe is shown in SEQ ID NO.6. 根据权利要求3所述的引物探针组,其特征在于,所述探针G-Probe的5'端标记荧光报告基团,3'端标记淬灭基团;探针G-Probe标记的荧光报告基团与探针T-Probe标记的荧光报告基团不同。The primer probe set according to claim 3, wherein the 5' end of the probe G-Probe is labeled with a fluorescent reporter group, and the 3' end is labeled with a quencher group; the fluorescence of the probe G-Probe is labeled The reporter group is different from the fluorescent reporter group labeled with the probe T-Probe. 根据权利要求2或4所述的引物探针组,其特征在于,所述荧光报告基团包括FAM或JOE,所述淬灭基团包括BHQ1。The primer-probe set according to claim 2 or 4, wherein the fluorescent reporter group includes FAM or JOE, and the quencher group includes BHQ1. 根据权利要求5所述的引物探针组,其特征在于,所述探针T-Probe的5'端标记FAM荧光报告基团,3'端标记BHQ1淬灭基团。The primer-probe set according to claim 5, wherein the 5' end of the probe T-Probe is labeled with a FAM fluorescent reporter group, and the 3' end is labeled with a BHQ1 quencher group. 根据权利要求5所述的引物探针组,其特征在于,所述探针G-Probe的5'端标记JOE荧光报告基团,3'端标记BHQ1淬灭基团。The primer-probe set according to claim 5, wherein the 5' end of the probe G-Probe is marked with a JOE fluorescent reporter group, and the 3' end is marked with a BHQ1 quencher group. 一种人β-类胰蛋白酶mRNA RT-PCR检测用试剂盒,其特征在于,所述试剂盒包括权利要求1~7任一项所述引物探针组、PCR反应液、酶混合液、β-类胰蛋白酶标准品、ROX参比染料和无核酶水。A kit for human β-tryptase mRNA RT-PCR detection, characterized in that, the kit includes the primer probe set described in any one of claims 1 to 7, PCR reaction solution, enzyme mixture, β - Tryptase standard, ROX reference dye and nuclease-free water. 根据权利要求8所述的试剂盒,其特征在于,所述PCR反应液包括dNTP mix、MgCl 2和缓冲液。 The kit according to claim 8, wherein the PCR reaction solution comprises dNTP mix, MgCl 2 and a buffer. 根据权利要求8所述的试剂盒,其特征在于,所述酶混合液包括 Taq酶、逆转录酶、RNA酶抑制剂和Taq酶抗体。The test kit according to claim 8, wherein the enzyme mixture comprises Taq enzyme, reverse transcriptase, RNase inhibitor and Taq enzyme antibody. 根据权利要求10所述的试剂盒,其特征在于,所述酶混合液中,Taq酶、逆转录酶、RNA酶抑制剂和Taq酶抗体的体积比为14:5:5:1。The kit according to claim 10, characterized in that, in the enzyme mixture, the volume ratio of Taq enzyme, reverse transcriptase, RNase inhibitor and Taq enzyme antibody is 14:5:5:1. 权利要求8~11任一项所述试剂盒的使用方法,包括以下步骤:将引物探针组、PCR反应液、酶混合液、标准品或待测样品、ROX参比染料和无核酶水混合后,进行荧光定量扩增。The method for using the kit according to any one of claims 8 to 11, comprising the steps of: mixing the primer probe set, PCR reaction solution, enzyme mixture, standard product or sample to be tested, ROX reference dye and nuclease-free water After mixing, fluorescent quantitative amplification is performed. 根据权利要求12所述的使用方法,其特征在于,以20μL计,所述试剂盒的反应体系包括:引物探针组2μL、PCR反应液10μL、酶混合液0.5μL、ROX参比染料0.1μL、标准品或待测样品5μL和无核酶水2.4μL;The method according to claim 12, characterized in that, in terms of 20 μL, the reaction system of the kit includes: 2 μL of primer probe set, 10 μL of PCR reaction solution, 0.5 μL of enzyme mixture, and 0.1 μL of ROX reference dye , 5 μL of standard or sample to be tested and 2.4 μL of nuclease-free water; 所述荧光定量扩增的条件为:42℃ 30min;95℃ 1min;95℃ 5s,60℃ 31s,扩增40个循环。The conditions for the fluorescence quantitative amplification are: 42°C for 30 min; 95°C for 1 min; 95°C for 5 s, 60°C for 31 s, and 40 cycles of amplification.
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