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WO2018200699A3 - COMPUTER SYSTEM WITH ACCESS TO GENOMIC INFORMATION AND ITS OPERATING METHOD - Google Patents

COMPUTER SYSTEM WITH ACCESS TO GENOMIC INFORMATION AND ITS OPERATING METHOD Download PDF

Info

Publication number
WO2018200699A3
WO2018200699A3 PCT/US2018/029398 US2018029398W WO2018200699A3 WO 2018200699 A3 WO2018200699 A3 WO 2018200699A3 US 2018029398 W US2018029398 W US 2018029398W WO 2018200699 A3 WO2018200699 A3 WO 2018200699A3
Authority
WO
WIPO (PCT)
Prior art keywords
genomic
data
access
computer system
operating method
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2018/029398
Other languages
French (fr)
Other versions
WO2018200699A2 (en
Inventor
Kensuke NUMAKURA
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Awakens Inc
Original Assignee
Awakens Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Awakens Inc filed Critical Awakens Inc
Publication of WO2018200699A2 publication Critical patent/WO2018200699A2/en
Publication of WO2018200699A3 publication Critical patent/WO2018200699A3/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F21/00—Security arrangements for protecting computers, components thereof, programs or data against unauthorised activity
    • G06F21/60—Protecting data
    • G06F21/604—Tools and structures for managing or administering access control systems
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/10—File systems; File servers
    • G06F16/17—Details of further file system functions
    • G06F16/178—Techniques for file synchronisation in file systems
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/10—File systems; File servers
    • G06F16/17—Details of further file system functions
    • G06F16/178—Techniques for file synchronisation in file systems
    • G06F16/1794—Details of file format conversion
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/90—Details of database functions independent of the retrieved data types
    • G06F16/903—Querying
    • G06F16/90335—Query processing
    • G06F16/90344—Query processing by using string matching techniques
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F21/00—Security arrangements for protecting computers, components thereof, programs or data against unauthorised activity
    • G06F21/60—Protecting data
    • G06F21/62—Protecting access to data via a platform, e.g. using keys or access control rules
    • G06F21/6218—Protecting access to data via a platform, e.g. using keys or access control rules to a system of files or objects, e.g. local or distributed file system or database
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/40—Encryption of genetic data
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/50—Compression of genetic data

Landscapes

  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Theoretical Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Bioethics (AREA)
  • General Health & Medical Sciences (AREA)
  • Databases & Information Systems (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • General Engineering & Computer Science (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Chemical & Material Sciences (AREA)
  • Medical Informatics (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • General Physics & Mathematics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Genetics & Genomics (AREA)
  • Organic Chemistry (AREA)
  • Software Systems (AREA)
  • Computer Security & Cryptography (AREA)
  • Computer Hardware Design (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Data Mining & Analysis (AREA)
  • Automation & Control Theory (AREA)
  • Biochemistry (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Analytical Chemistry (AREA)
  • Computational Linguistics (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)

Abstract

A method of operation of a computing system includes registering different instances of a genomic raw data for a user profile; generating a conversion genomic data for each of the genomic raw data by removing a genomic raw line of the genomic raw data for reducing a genomic data size; generating a unification genomic file with a control unit based on a merge policy for merging different instances of a genotype sample from each of the conversion genomic data; and retrieving a personal genomic data based on the unification genomic file for presenting an interpretation data on a device.
PCT/US2018/029398 2017-04-27 2018-04-25 Computing system with genomic information access mechanism and method of operation thereof Ceased WO2018200699A2 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US201762490735P 2017-04-27 2017-04-27
US62/490,735 2017-04-27

Publications (2)

Publication Number Publication Date
WO2018200699A2 WO2018200699A2 (en) 2018-11-01
WO2018200699A3 true WO2018200699A3 (en) 2019-01-31

Family

ID=63916233

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2018/029398 Ceased WO2018200699A2 (en) 2017-04-27 2018-04-25 Computing system with genomic information access mechanism and method of operation thereof

Country Status (2)

Country Link
US (1) US20180314842A1 (en)
WO (1) WO2018200699A2 (en)

Families Citing this family (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2023541341A (en) * 2020-09-14 2023-10-02 イルミナ インコーポレイテッド Custom data files for personalized medicine

Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7089498B1 (en) * 2000-09-26 2006-08-08 Rathjen Alicemarie G Method for preparing and using personal and genetic profiles
US20110238482A1 (en) * 2010-03-29 2011-09-29 Carney John S Digital Profile System of Personal Attributes, Tendencies, Recommended Actions, and Historical Events with Privacy Preserving Controls
US20120102041A1 (en) * 2010-10-22 2012-04-26 Samsung Sds Co., Ltd. Genetic information management system and method
WO2014202615A2 (en) * 2013-06-19 2014-12-24 Sophia Genetics S.A. Method to manage raw genomic data in a privacy preserving manner in a biobank
WO2016083949A1 (en) * 2014-11-25 2016-06-02 Koninklijke Philips N.V. Secure transmission of genomic data

Patent Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7089498B1 (en) * 2000-09-26 2006-08-08 Rathjen Alicemarie G Method for preparing and using personal and genetic profiles
US20110238482A1 (en) * 2010-03-29 2011-09-29 Carney John S Digital Profile System of Personal Attributes, Tendencies, Recommended Actions, and Historical Events with Privacy Preserving Controls
US20120102041A1 (en) * 2010-10-22 2012-04-26 Samsung Sds Co., Ltd. Genetic information management system and method
WO2014202615A2 (en) * 2013-06-19 2014-12-24 Sophia Genetics S.A. Method to manage raw genomic data in a privacy preserving manner in a biobank
WO2016083949A1 (en) * 2014-11-25 2016-06-02 Koninklijke Philips N.V. Secure transmission of genomic data

Also Published As

Publication number Publication date
US20180314842A1 (en) 2018-11-01
WO2018200699A2 (en) 2018-11-01

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