WO2018005328A1 - Deuterated bictegravir - Google Patents
Deuterated bictegravir Download PDFInfo
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- WO2018005328A1 WO2018005328A1 PCT/US2017/039207 US2017039207W WO2018005328A1 WO 2018005328 A1 WO2018005328 A1 WO 2018005328A1 US 2017039207 W US2017039207 W US 2017039207W WO 2018005328 A1 WO2018005328 A1 WO 2018005328A1
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- deuterium
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K45/00—Medicinal preparations containing active ingredients not provided for in groups A61K31/00 - A61K41/00
- A61K45/06—Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D498/00—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms
- C07D498/02—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms in which the condensed system contains two hetero rings
- C07D498/04—Ortho-condensed systems
Definitions
- ADME absorption, distribution, metabolism and/or excretion
- ADME limitation that affects many medicines is the formation of toxic or biologically reactive metabolites.
- some patients receiving the drug may experience toxicities, or the safe dosing of such drugs may be limited such that patients receive a suboptimal amount of the active agent.
- modifying dosing intervals or formulation approaches can help to reduce clinical adverse effects, but often the formation of such undesirable metabolites is intrinsic to the metabolism of the compound.
- a metabolic inhibitor will be co-administered with a drug that is cleared too rapidly.
- a drug that is cleared too rapidly.
- the FDA recommends that these drugs be co-dosed with ritonavir, an inhibitor of cytochrome P450 enzyme 3A4 (CYP3A4), the enzyme typically responsible for their metabolism (see Kempf, D.J. et al., Antimicrobial agents and chemotherapy, 1997, 41(3): 654-60).
- CYP3A4 cytochrome P450 enzyme 3A4
- Ritonavir causes adverse effects and adds to the pill burden for HIV patients who must already take a combination of different drugs.
- the CYP2D6 inhibitor quinidine has been added to dextromethorphan for the purpose of reducing rapid CYP2D6 metabolism of dextromethorphan in a treatment of pseudobulbar affect.
- Quinidine has unwanted side effects that greatly limit its use in potential combination therapy (see Wang, L et al., Clinical Pharmacology and Therapeutics, 1994, 56(6 Pt 1): 659-67; and FDA label for quinidine at www.accessdata.fda.gov).
- a potentially attractive strategy for improving a drug’s metabolic properties is deuterium modification.
- Deuterium is a safe, stable, non-radioactive isotope of hydrogen. Compared to hydrogen, deuterium forms stronger bonds with carbon. In select cases, the increased bond strength imparted by deuterium can positively impact the ADME properties of a drug, creating the potential for improved drug efficacy, safety, and/or tolerability.
- the size and shape of deuterium are essentially identical to those of hydrogen, replacement of hydrogen by deuterium would not be expected to affect the biochemical potency and selectivity of the drug as compared to the original chemical entity that contains only hydrogen.
- This invention relates to deuterated forms of bictegravir, and pharmaceutically acceptable salts thereof.
- the invention provides a compound of Formula I:
- each of Y 1 , Y 2 , Y 3 , Y 4a , Y 4b , Y 5a , Y 5b , Y 6 , Y 7a , Y 7b , Y 8 , Y 9 , Y 10a , Y 10b , Y 11a , and Y 11b is independently hydrogen or deuterium; provided that if each Y 1 , Y 2 , Y 3 , Y 4a , Y 4b , Y 5a , Y 5b , Y 6 , Y 7a , Y 7b , Y 8 , Y 9 , Y 10a , Y 10b , and Y 11a is hydrogen, then Y 11b is deuterium.
- This invention also provides compositions comprising a compound of this invention, including pharmaceutical compositions comprising a compound of this invention and a pharmaceutically acceptable carrier.
- This invention also provides the use of such compounds and compositions in methods of treating diseases and conditions that are beneficially treated by administering a human immunodeficiency virus (HIV) integrase.
- the invention provides a method of inhibiting human immunodeficiency virus (HIV) integrase activity in a cell, comprising contacting a cell with one or more compounds of Formula I herein, or a pharmaceutically acceptable salt thereof.
- Some exemplary embodiments include a method of treating human
- immunodeficiency virus that is beneficially treated by Formula I in a subject in need thereof, comprising the step of administering to the subject an effective amount of a compound or a composition of this invention.
- Bictegravir also known by the chemical name (2R,5S,13aR)-8-hydroxy-7,9-dioxo-N- (2,4,6-trifluorobenzyl)-2,3,4,5,7,9,13- ,13a-octahydro-2,5- methanopyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazepine-1-0-carboxamide, and by the code names GS-9883 and GS-9883-001, is a potent HIV integrase inhibitor that causes a rapid reduction of HIV viral load in humans.
- Bictegravir is currently in Phase III clinical trials for the treatment of HIV-1 infection, and is currently being tested for safety and efficacy in the antiretroviral treatment of HIV- infected adults as part of a fixed-dose combination with emtricitabine/tenofovir alafenamide.
- treat means decrease, suppress, attenuate, diminish, arrest, or stabilize the development or progression of a disease (e.g., a disease or disorder delineated herein), lessen the severity of the disease or improve the symptoms associated with the disease.
- a disease e.g., a disease or disorder delineated herein
- Disease means any condition or disorder that damages or interferes with the normal function of a cell, tissue, or organ.
- the term“subject” includes humans and non-human mammals.
- Non-limiting examples of non-human mammals include mice, rats, guinea pigs, rabbits, dogs, cats, monkeys, apes, pigs, cows, sheep, horses, etc.
- alkyl refers to a monovalent saturated hydrocarbon group.
- C 1 -C 6 alkyl is an alkyl having from 1 to 6 carbon atoms.
- An alkyl may be linear or branched.
- alkyl groups include methyl; ethyl; propyl, including n-propyl and isopropyl; butyl, including n-butyl, isobutyl, sec-butyl, and t-butyl; pentyl, including, for example, n-pentyl, isopentyl, and neopentyl; and hexyl, including, for example, n-hexyl and 2-methylpentyl.
- any atom not specifically designated as a particular isotope is meant to represent any stable isotope of that atom.
- the position is understood to have hydrogen at its natural abundance isotopic composition.
- the position is at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% hydrogen.
- a position when a position is designated specifically as“H” or“hydrogen”, the position incorporates ⁇ 10% deuterium, ⁇ 5% deuterium, ⁇ 4% deuterium, ⁇ 3% deuterium, ⁇ 2% deuterium, or ⁇ 1% deuterium. Also unless otherwise stated, when a position is designated specifically as“D” or“deuterium”, the position is understood to have deuterium at an abundance that is at least 3340 times greater than the natural abundance of deuterium, which is 0.015% (i.e., at least 50.1% incorporation of deuterium).
- isotopic enrichment factor means the ratio between the isotopic abundance and the natural abundance of a specified isotope.
- a compound of this invention has an isotopic enrichment factor for each designated deuterium atom of at least 3500 (52.5% deuterium incorporation at each designated deuterium atom), at least 4000 (60% deuterium incorporation), at least 4500 (67.5% deuterium incorporation), at least 5000 (75% deuterium), at least 5500 (82.5% deuterium incorporation), at least 6000 (90% deuterium incorporation), at least 6333.3 (95% deuterium incorporation), at least 6466.7 (97% deuterium incorporation), at least 6600 (99% deuterium incorporation), or at least 6633.3 (99.5% deuterium incorporation).
- each designated deuterium atom has deuterium incorporation of at least 52.5%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 60%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 67.5%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 75%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 82.5%.
- each designated deuterium atom has deuterium incorporation of at least 90%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 95%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 97.5%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 99%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 99.5%. [24]
- the term“isotopologue” refers to a species in which the chemical structure differs from a specific compound of this invention only in the isotopic composition thereof.
- a compound represented by a particular chemical structure containing indicated deuterium atoms will also contain lesser amounts of isotopologues having hydrogen atoms at one or more of the designated deuterium positions in that structure.
- the relative amount of such isotopologues in a compound of this invention will depend upon a number of factors including the isotopic purity of deuterated reagents used to make the compound and the efficiency of incorporation of deuterium in the various synthesis steps used to prepare the compound.
- the invention also provides salts of the compounds of the invention.
- a salt of a compound of this invention is formed between an acid and a basic group of the compound, such as an amino functional group, or a base and an acidic group of the compound, such as a carboxyl functional group.
- the compound is a pharmaceutically acceptable acid addition salt.
- the acid addition salt may be a deuterated acid addition salt.
- A“pharmaceutically acceptable,” as used herein, refers to a component that is, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and other mammals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio.
- A“pharmaceutically acceptable salt” means any non-toxic salt that, upon administration to a recipient, is capable of providing, either directly or indirectly, a compound of this invention.
- A“pharmaceutically acceptable counterion” is an ionic portion of a salt that is not toxic when released from the salt upon administration to a recipient.
- Acids commonly employed to form pharmaceutically acceptable salts include inorganic acids such as hydrogen bisulfide, hydrochloric acid, hydrobromic acid, hydroiodic acid, sulfuric acid and phosphoric acid, as well as organic acids such as para-toluenesulfonic acid, salicylic acid, tartaric acid, bitartaric acid, ascorbic acid, maleic acid, besylic acid, fumaric acid, gluconic acid, glucuronic acid, formic acid, glutamic acid, methanesulfonic acid, ethanesulfonic acid, benzenesulfonic acid, lactic acid, oxalic acid, para- bromophenylsulfonic acid, carbonic acid, succinic acid, citric acid, benzoic acid and acetic acid, as well as related inorganic and organic acids.
- inorganic acids such as hydrogen bisulfide, hydrochloric acid, hydrobromic acid, hydroiodic acid, sulfuric acid and phosphoric acid
- Such pharmaceutically acceptable salts thus include sulfate, pyrosulfate, bisulfate, sulfite, bisulfite, phosphate, monohydrogenphosphate, dihydrogenphosphate, metaphosphate, pyrophosphate, chloride, bromide, iodide, acetate, propionate, decanoate, caprylate, acrylate, formate, isobutyrate, caprate, heptanoate, propiolate, oxalate, malonate, succinate, suberate, sebacate, fumarate, maleate, butyne-1,4-dioate, hexyne-l,6-dioate, benzoate, chlorobenzoate, methylbenzoate, dinitrobenzoate, hydroxybenzoate, methoxybenzoate, phthalate, terephthalate, sulfonate, xylene sulfonate, phenylacetate, phenylpropionat
- pharmaceutically acceptable acid addition salts include those formed with mineral acids such as hydrochloric acid and hydrobromic acid, and especially those formed with organic acids such as maleic acid.
- the acids commonly employed to form pharmaceutically acceptable salts include the above-listed inorganic acids, wherein at least one hydrogen is replaced with deuterium.
- the pharmaceutically acceptable salt may also be a salt of a compound of the present invention having an acidic functional group, such as a carboxylic acid functional group, and a base.
- exemplary bases include, but are not limited to, hydroxide of alkali metals including sodium, potassium, and lithium; hydroxides of alkaline earth metals such as calcium and magnesium; hydroxides of other metals, such as aluminum and zinc; ammonia, organic amines such as unsubstituted or hydroxyl-substituted mono-, di-, or tri-alkylamines, dicyclohexylamine; tributyl amine; pyridine; N-methyl, N-ethylamine; diethylamine;
- triethylamine mono-, bis-, or tris-(2-OH-(C 1 -C 6 )-alkylamine), such as N,N-dimethyl-N-(2- hydroxyethyl)amine or tri-(2-hydroxyethyl)amine; N-methyl-D-glucamine; morpholine; thiomorpholine; piperidine; pyrrolidine; and amino acids such as arginine, lysine, and the like.
- the pharmaceutically acceptable salt is a sodium salt.
- the compounds of the present invention may contain an asymmetric carbon atom, for example, as the result of deuterium substitution or otherwise.
- compounds of this invention can exist as either individual enantiomers, or mixtures of the two enantiomers.
- a compound of the present invention may exist as either a racemic mixture or a scalemic mixture, or as individual respective stereoisomers that are substantially free from another possible stereoisomer.“Stereoisomer” refers to both enantiomers and diastereomers.
- substantially free of other stereoisomers means less than 25% of other stereoisomers, preferably less than 10% of other stereoisomers, more preferably less than 5% of other stereoisomers and most preferably less than 2% of other stereoisomers are present.
- Methods of obtaining or synthesizing an individual enantiomer for a given compound are known in the art and may be applied as practicable to final compounds or to starting material or intermediates.
- stable compounds refers to compounds which possess stability sufficient to allow for their manufacture and which maintain the integrity of the compound for a sufficient period of time to be useful for the purposes detailed herein (e.g., formulation into therapeutic products, intermediates for use in production of therapeutic compounds, isolatable or storable intermediate compounds, treating a disease or condition responsive to therapeutic agents).
- Substituted with deuterium refers to the replacement of one or more hydrogen atoms with a corresponding number of deuterium atoms.
- variable may be referred to generally (e.g., "each Y") or may be referred to specifically (e.g., Y 1 , Y 2 , Y 3 , etc.). Unless otherwise indicated, when a variable is referred to generally, it is meant to include all specific embodiments of that particular variable.
- each of Y 1 , Y 2 , Y 3 , Y 4a , Y 4b , Y 5a , Y 5b , Y 6 , Y 7a , Y 7b , Y 8 , Y 9 , Y 10a , Y 10b , Y 11a , and Y 11b is independently hydrogen or deuterium; provided that if each Y 1 , Y 2 , Y 3 , Y 4a , Y 4b , Y 5a , Y 5b , Y 6 , Y 7a , Y 7b , Y 8 , Y 9 , Y 10a , Y 10b , and Y 11a is hydrogen, then Y 11b is deuterium.
- At least one of Y 1 , Y 2 , Y 3 , Y 4a , Y 4b , Y 5a , Y 5b , Y 6 , Y 7a , Y 7b , Y 8 , Y 9 , Y 10a , Y 10b , Y 11a , and Y 11b is hydrogen.
- At least one of Y 4a , Y 4b , Y 5a , Y 5b , Y 6 , Y 7a , Y 7b , Y 8 , Y 9 , Y 10a , Y 10b , Y 11a , and Y 11b is hydrogen.
- Y 1 , Y 2 , and Y 3 are the same.
- Y 1 , Y 2 , and Y 3 are hydrogen.
- Y 1 , Y 2 , and Y 3 are deuterium.
- the compound of Formula I has the structure of Formula 1A:
- Y 4a and Y 4b are the same.
- Y 4a and Y 4b are hydrogen.
- Y 4a and Y 4b are deuterium.
- Y 5a and Y 5b are the same.
- Y 5a and Y 5b are hydrogen.
- Y 5a and Y 5b are deuterium.
- Y 4a , Y 4b , Y 5a , and Y 5b are the same.
- Y 4a , Y 4b , Y 5a , and Y 5b are hydrogen.
- Y 4a , Y 4b , Y 5a , and Y 5b are deuterium.
- Y 4a and Y 4b are hydrogen and Y 5a and Y 5b are deuterium.
- Y 4a and Y 4b are deuterium and Y 5a and Y 5b are hydrogen.
- one of Y 4a and Y 4b is hydrogen and the other is deuterium; and one of Y 5a and Y 5b is hydrogen and the other is deuterium.
- both of Y 4a and Y 4b are hydrogen; and one of Y 5a and Y 5b is hydrogen and the other is deuterium.
- both of Y 4a and Y 4b are deuterium; and one of Y 5a and Y 5b is hydrogen and the other is deuterium.
- both of Y 5a and Y 5b are hydrogen; and one of Y 4a and Y 4b is hydrogen and the other is deuterium.
- both of Y 5a and Y 5b are deuterium; and one of Y 4a and Y 4b is hydrogen and the other is deuterium.
- both of Y 5a and Y 5b are deuterium; and one of Y 4a and Y 4b is hydrogen and the other is deuterium.
- Y 6 is hydrogen. Alternatively, Y 6 is deuterium.
- Y 7a and Y 7b are the same. In one aspect, Y 7a and Y 7b are hydrogen. Alternatively, Y 7a and Y 7b are deuterium. In some embodiments, one of Y 7a and Y 7b is hydrogen the other is deuterium.
- Y 8 is hydrogen.
- Y 8 is deuterium.
- Y 6 and Y 8 are the same.
- Y 6 and Y 8 are hydrogen.
- Y 6 and Y 8 are deuterium.
- Y 6 is different than Y 8 .
- Y 6 is hydrogen and Y 8 is deuterium.
- Y 6 is deuterium and Y 8 is hydrogen.
- Y 8 are the same. In one aspect, Y 6 7 7b 8 6 7 7b and Y 8 are deuterium.
- Y 6 is hydrogen, Y 7a and Y 7b are hydrogen, and Y 8 is hydrogen.
- Y 6 is hydrogen, Y 7a and Y 7b are hydrogen, and Y 8 is deuterium.
- Y 6 is hydrogen, Y 7a and Y 7b are deuterium, and Y 8 is deuterium.
- Y 6 is hydrogen, Y 7a and Y 7b are deuterium, and Y 8 is hydrogen.
- Y 6 is deuterium, Y 7a and Y 7b are deuterium, and Y 8 is deuterium.
- Y 6 is deuterium
- Y 7a and Y 7b are deuterium
- Y 8 is hydrogen
- Y 6 is deuterium
- Y 7a and Y 7b are hydrogen
- Y 8 is deuterium
- Y 6 is deuterium
- Y 7a and Y 7b are hydrogen
- Y 8 is hydrogen.
- Y 9 is hydrogen.
- Y 9 is deuterium.
- Y 10a and Y 10b are hydrogen.
- Y 10a and Y 10b are deuterium.
- one of Y 10a and Y 10b is hydrogen, and the other is deuterium.
- Y 9 is hydrogen and Y 10a and Y 10b are hydrogen.
- Y 9 is hydrogen, Y 10a and Y 10b are deuterium.
- Y 9 is deuterium, and Y 10a and Y 10b are hydrogen.
- Y 9 is deuterium, and Y 10a and Y 10b are deuterium.
- Y 11a and Y 11b are the same.
- Y 11a and Y 11b are hydrogen.
- Y 11a and Y 11b are deuterium.
- one of Y 11a and Y 11b is hydrogen, and the other is deuterium.
- the compound is a compound of Formula I, wherein Y , Y , and Y are hydrogen, and the compound is selected from any one of the compounds set forth in Table 1 below:
- the compound is a compound of Formula I, wherein Y , Y , and Y are deuterium, and the compound is selected from any one of the compounds set forth in Table 2 below:
- any atom not designated as deuterium is present at its natural isotopic abundance.
- the level of deuterium incorporation at each Y 1 is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
- the level of deuterium incorporation at each Y 2 is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
- the level of deuterium incorporation at each Y 3 is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
- the level of deuterium incorporation at each Y 4a or Y 4b is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
- the level of deuterium incorporation at each Y 5a or Y 5b is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
- the level of deuterium incorporation at each Y 6 is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
- the level of deuterium incorporation at each Y 7a or Y 7b is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
- the level of deuterium incorporation at each Y 8 is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
- the level of deuterium incorporation at each Y 9 is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
- the level of deuterium incorporation at each Y 10a or Y 10b is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
- the level of deuterium incorporation at each Y 11a or Y 11b is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
- any atom not designated as deuterium in any of the embodiments set forth herein is present at its natural isotopic abundance.
- deuterium incorporation at each designated deuterium atom is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
- At least one of Y 1 , Y 2 , Y 3 , Y 4a , Y 4b , Y 5a , Y 5b , Y 6 , Y 7a , Y 7b , Y 8 , Y 9 , Y 10a , Y 10b , Y 11a , and Y 11b is hydrogen.
- Deuterium-modified analogs of bictegravir can be synthesized by means known in the art of organic chemistry. For instance, using methods described in US Patent No.9,216,996 (Haolun J. et al., assigned to Gilead Sciences, Inc. and incorporated herein by reference), using deuterium-containing reagents provides the desired deuterated analogs.
- Such methods can be carried out utilizing corresponding deuterated and optionally, other isotope-containing reagents and/or intermediates to synthesize the compounds delineated herein, or invoking standard synthetic protocols known in the art for introducing isotopic atoms to a chemical structure.
- deuterated intermediates 2a and 2b for use in the preparation of compounds of Formula I according to Scheme 1, may be prepared from corresponding deuterated reagents as exemplified in Scheme 2 below.
- deuterated intermediates 4a-4d for use in the preparation of compounds of Formula I according to Scheme 1, may be prepared from corresponding deuterated reagents as exemplified in Scheme 3 below.
- acetaldehyde is converted to alkylhalide 14a via reaction with chlorine gas and subsequent acetal protection with CaCl 2 in methanol.
- Use of appropriately deuterated reagents allows deuterium incorporation at the Y 9 , Y 10a , and Y 10b positions of a compound of Formula I or any appropriate intermediate herein, e.g., about 90%, about 95%, about 97%, about 98%, or about 99% deuterium incorporation at any Y 9 , Y 10a , and/or Y 10b .
- deuterated intermediates 9a-9d for use in the preparation of compounds of Formula I according to Scheme 1, may be prepared from corresponding deuterated reagents as exemplified in Scheme 4 below.
- Cyclopentadiene-d 6 is prepared according to the procedure described in Cangoenuel, A. et. al. Inorg. Chem.2013, 52, 11859-11866.
- the invention also provides pharmaceutical compositions comprising an effective amount of a compound of Formula I (e.g., including any of the formulae herein), or a pharmaceutically acceptable salt of said compound; and a pharmaceutically acceptable carrier.
- a pharmaceutically acceptable carrier e.g., including any of the formulae herein
- the carrier(s) are“acceptable” in the sense of being compatible with the other ingredients of the formulation and, in the case of a pharmaceutically acceptable carrier, not deleterious to the recipient thereof in an amount used in the medicament.
- Pharmaceutically acceptable carriers, adjuvants, excipients and vehicles that may be used in the pharmaceutical compositions of this invention include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins, such as human serum albumin, buffer substances such as phosphates (e.g., phosphate-buffered saline, etc.), glycine, sorbic acid, potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes, such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, cellulose-based substances, polyethylene glycol, sodium carboxymethylcellulose, polyacrylates, waxes, polyethylene-polyoxypropylene-block polymers, polyethylene glycol and wool fat.
- ion exchangers e.g.,
- the solubility and bioavailability of the compounds of the present invention in pharmaceutical compositions may be enhanced by methods well-known in the art.
- One method includes the use of lipid excipients in the formulation. See“Oral Lipid- Based Formulations: Enhancing the Bioavailability of Poorly Water-Soluble Drugs (Drugs and the Pharmaceutical Sciences),” David J. Hauss, ed. Informa Healthcare, 2007; and“Role of Lipid Excipients in Modifying Oral and Parenteral Drug Delivery: Basic Principles and Biological Examples,” Kishor M. Wasan, ed. Wiley-Interscience, 2006.
- Another known method of enhancing bioavailability is the use of an amorphous form of a compound of this invention optionally formulated with a poloxamer, such as LUTROL TM and PLURONIC TM (BASF Corporation), or block copolymers of ethylene oxide and propylene oxide. See United States patent 7,014,866; and United States patent publications 20060094744 and 20060079502.
- compositions of the invention include those suitable for oral, rectal, nasal, topical (including buccal and sublingual), vaginal or parenteral (including subcutaneous, intramuscular, intravenous and intradermal) administration.
- the compound of the formulae herein is administered transdermally (e.g., using a transdermal patch or iontophoretic techniques).
- Other formulations may conveniently be presented in unit dosage form, e.g., tablets, sustained release capsules, and in liposomes, and may be prepared by any methods well known in the art of pharmacy. See, for example, Remington: The Science and Practice of Pharmacy, Lippincott Williams & Wilkins, Baltimore, MD (20th ed.2000).
- Such preparative methods include the step of bringing into association with the molecule to be administered ingredients such as the carrier that constitutes one or more accessory ingredients.
- ingredients such as the carrier that constitutes one or more accessory ingredients.
- the compositions are prepared by uniformly and intimately bringing into association the active ingredients with liquid carriers, liposomes or finely divided solid carriers, or both, and then, if necessary, shaping the product.
- compositions of the present invention suitable for oral administration may be presented as discrete units such as capsules, sachets, or tablets each containing a predetermined amount of the active ingredient; a powder or granules; a solution or a suspension in an aqueous liquid or a non-aqueous liquid; an oil-in-water liquid emulsion; a water-in-oil liquid emulsion; packed in liposomes; or as a bolus, etc.
- Soft gelatin capsules can be useful for containing such suspensions, which may beneficially increase the rate of compound absorption.
- carriers that are commonly used include lactose and corn starch.
- Lubricating agents such as magnesium stearate, are also typically added.
- useful diluents include lactose and dried cornstarch.
- aqueous suspensions are administered orally, the active ingredient is combined with emulsifying and suspending agents. If desired, certain sweetening and/or flavoring and/or coloring agents may be added.
- compositions suitable for oral administration include lozenges comprising the ingredients in a flavored basis, usually sucrose and acacia or tragacanth; and pastilles comprising the active ingredient in an inert basis such as gelatin and glycerin, or sucrose and acacia.
- compositions suitable for parenteral administration include aqueous and non-aqueous sterile injection solutions which may contain anti-oxidants, buffers, bacteriostats and solutes which render the formulation isotonic with the blood of the intended recipient; and aqueous and non-aqueous sterile suspensions which may include suspending agents and thickening agents.
- the formulations may be presented in unit-dose or multi-dose containers, for example, sealed ampules and vials, and may be stored in a freeze dried (lyophilized) condition requiring only the addition of the sterile liquid carrier, for example water for injections, immediately prior to use.
- Extemporaneous injection solutions and suspensions may be prepared from sterile powders, granules and tablets.
- Such injection solutions may be in the form, for example, of a sterile injectable aqueous or oleaginous suspension.
- This suspension may be formulated according to techniques known in the art using suitable dispersing or wetting agents (such as, for example, Tween 80) and suspending agents.
- the sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally-acceptable diluent or solvent, for example, as a solution in 1,3-butanediol.
- suitable vehicles and solvents that may be employed are mannitol, water, Ringer's solution and isotonic sodium chloride solution.
- sterile, fixed oils are conventionally employed as a solvent or suspending medium.
- any bland fixed oil may be employed including synthetic mono- or diglycerides.
- Fatty acids, such as oleic acid and its glyceride derivatives are useful in the preparation of injectables, as are natural pharmaceutically-acceptable oils, such as olive oil or castor oil, especially in their polyoxyethylated versions.
- These oil solutions or suspensions may also contain a long-chain alcohol diluent or dispersant.
- compositions of this invention may be administered in the form of suppositories for rectal administration.
- These compositions can be prepared by mixing a compound of this invention with a suitable non-irritating excipient which is solid at room temperature but liquid at the rectal temperature and therefore will melt in the rectum to release the active components.
- suitable non-irritating excipient include, but are not limited to, cocoa butter, beeswax and polyethylene glycols.
- compositions of this invention may be administered by nasal aerosol or inhalation.
- Such compositions are prepared according to techniques well-known in the art of pharmaceutical formulation and may be prepared as solutions in saline, employing benzyl alcohol or other suitable preservatives, absorption promoters to enhance
- Topical administration of the pharmaceutical compositions of this invention is especially useful when the desired treatment involves areas or organs readily accessible by topical application.
- the pharmaceutical composition should be formulated with a suitable ointment containing the active components suspended or dissolved in a carrier.
- Carriers for topical administration of the compounds of this invention include, but are not limited to, mineral oil, liquid petroleum, white petroleum, propylene glycol, polyoxyethylene polyoxypropylene compound, emulsifying wax, and water.
- the pharmaceutical composition can be formulated with a suitable lotion or cream containing the active compound suspended or dissolved in a carrier.
- Suitable carriers include, but are not limited to, mineral oil, sorbitan monostearate, polysorbate 60, cetyl esters wax, cetearyl alcohol, 2-octyldodecanol, benzyl alcohol, and water.
- the pharmaceutical compositions of this invention may also be topically applied to the lower intestinal tract by rectal suppository formulation or in a suitable enema formulation.
- Topically-transdermal patches and iontophoretic administration are also included in this invention.
- compositions at the site of interest may be incorporated into compositions for coating an implantable medical device, such as prostheses, artificial valves, vascular grafts, stents, or catheters. Suitable coatings and the general preparation of coated implantable devices are known in the art and are exemplified in US Patents 6,099,562; 5,886,026; and 5,304,121.
- the coatings are typically biocompatible polymeric materials such as a hydrogel polymer, polymethyldisiloxane, polycaprolactone, polyethylene glycol, polylactic acid, ethylene vinyl acetate, and mixtures thereof.
- the coatings may optionally be further covered by a suitable topcoat of fluorosilicone, polysaccharides, polyethylene glycol, phospholipids or combinations thereof to impart controlled release characteristics in the composition.
- Coatings for invasive devices are to be included within the definition of pharmaceutically acceptable carrier, adjuvant or vehicle, as those terms are used herein.
- the invention provides a method of coating an implantable medical device comprising the step of contacting said device with the coating composition described above. It will be obvious to those skilled in the art that the coating of the device will occur prior to implantation into a mammal.
- the invention provides a method of impregnating an implantable drug release device comprising the step of contacting said drug release device with a compound or composition of this invention.
- Implantable drug release devices include, but are not limited to, biodegradable polymer capsules or bullets, non-degradable, diffusible polymer capsules and biodegradable polymer wafers.
- the invention provides an implantable medical device coated with a compound or a composition comprising a compound of this invention, such that said compound is therapeutically active.
- the invention provides an implantable drug release device impregnated with or containing a compound or a composition comprising a compound of this invention, such that said compound is released from said device and is therapeutically active.
- composition of this invention may be painted onto the organ, or a composition of this invention may be applied in any other convenient way.
- composition of this invention further comprises one or more additional therapeutic agents.
- the additional therapeutic agent(s) may be selected from any compound or therapeutic agent known to have or that demonstrates advantageous properties when administered with a compound having the same mechanism of action as bictegravir.
- Such agents include those indicated as being useful in combination with bictegravir, including but not limited to, lamivudine, zidovudine, lopinavir, ritonavir, abacavir, tenofovir disoproxil fumarate, emtricitabine, efavirenz, rilpivirine, elvitegravir, cobicistat, dolutegravir, atazanavir, darunavir, raltegravir, tenofovir alafenamide, tenofovir alafenamide fumarate, and any combination thereof.
- the additional therapeutic agent is an agent useful in the treatment of Human Immunodeficiency Virus (HIV).
- HIV Human Immunodeficiency Virus
- the additional therapeutic agent is selected from emtricitabine and tenofovir alafenamide. In some embodiments, the additional therapeutic agent is a combination of emtricitabine and tenofovir alafenamide. In some embodiments, the additional therapeutic agent is a combination of 200 mg of emtricitabine and 25 mg of tenofovir alafenamide.
- the pharmaceutical composition comprises a compound of Formula I or a pharmaceutically acceptable salt thereof, one or more additional therapeutic agents, and a pharmaceutically acceptable carrier in a single dosage form.
- the single dosage form is a tablet.
- the invention provides separate dosage forms of a compound of this invention and one or more of any of the above-described additional therapeutic agents, wherein the compound and additional therapeutic agent(s) are associated with one another.
- the term“associated with one another” as used herein means that the separate dosage forms are packaged together or otherwise attached to one another such that it is readily apparent that the separate dosage forms are intended to be sold and administered together (within less than 24 hours of one another, consecutively or simultaneously).
- the compound of the present invention is present in an effective amount.
- the term“effective amount” refers to an amount which, when administered in a proper dosing regimen, is sufficient to treat the target disorder.
- an effective amount of a compound of this invention can range from about 25 to 50 mg per day; 15 to 75 mg per day; 10 to 100 mg per day; 5 to 500 mg per day, or 2 to 1000 mg per day.
- the effective amount can be dosed once or twice a day.
- Effective doses will also vary, as recognized by those skilled in the art, depending on the diseases treated, the severity of the disease, the route of administration, the sex, age and general health condition of the subject, excipient usage, the possibility of co-usage with other therapeutic treatments such as use of other agents and the judgment of the treating physician. For example, guidance for selecting an effective dose can be determined by reference to the prescribing information for bictegravir.
- an effective amount of the additional therapeutic agent(s) is between about 20% and 100% of the dosage normally utilized in a monotherapy regime using just that agent.
- an effective amount is between about 70% and 100% of the normal
- the invention provides a method of inhibiting human immunodeficiency virus (HIV) integrase activity in a cell, comprising contacting a cell with one or more compounds of Formula I herein, or a pharmaceutically acceptable salt thereof.
- the cell is contacted in vitro.
- the cell is contacted in vivo.
- the cell is contacted ex vivo.
- the invention provides a method of treating a disease that is beneficially treated by bictegravir in a subject in need thereof, comprising the step of administering to the subject an effective amount of a compound or a composition of this invention.
- the subject is a patient in need of such treatment.
- the subject is a human.
- Such diseases are well known in the art and are disclosed in, but not limited to the following patents and published applications: human immunodeficiency virus (HIV) U.S. Patent Application No.2016016973, U.S. Patent Application No.2015366872, and U.S. Patent No.9,216,996.
- the method of this invention is used to treat human immunodeficiency virus (HIV) in a subject in need thereof.
- the invention provides a method of treating human immunodeficiency virus (HIV), the method comprising administering to a subject in need of such treatment an effective amount of a compound or a composition of this invention.
- HIV human immunodeficiency virus
- the HIV is HIV-1.
- the subject is a patient in need of such treatment.
- the subject is a human.
- the subject is a virologically suppressed HIV-1-infected subject.
- the subject is HIV-1 infected, antiretroviral treatment-naive subject.
- Identifying a subject in need of such treatment can be in the judgment of a subject or a health care professional and can be subjective (e.g. opinion) or objective (e.g. measurable by a test or diagnostic method).
- any of the above methods of treatment comprises the further step of co-administering to the subject in need thereof an effective amount of one or more additional therapeutic agents.
- additional therapeutic agent may be made from any additional therapeutic agent known to be useful for co-administration with bictegravir.
- additional therapeutic agent is also dependent upon the particular disease or condition to be treated. Examples of additional therapeutic agents that may be employed in the methods of this invention are those set forth above for use in combination compositions comprising a compound of this invention and an additional therapeutic agent.
- the combination therapies of this invention include co-administering a compound of Formula I and one or more additional therapeutic agents to a subject in need thereof for treatment of human immunodeficiency virus (HIV).
- HAV human immunodeficiency virus
- co-administered means that the additional therapeutic agent may be administered together with a compound of this invention as part of a single dosage form (such as a composition of this invention comprising a compound of the invention and an additional therapeutic agent as described above) or as separate, multiple dosage forms.
- the additional agent may be administered prior to, consecutively with, or following the administration of a compound of this invention.
- both the compounds of this invention and the additional therapeutic agent(s) are administered by conventional methods.
- the administration of a composition of this invention, comprising both a compound of the invention and one or more additional therapeutic agents, to a subject does not preclude the separate administration of that same therapeutic agent, any other additional therapeutic agent or any compound of this invention to said subject at another time during a course of treatment.
- the effective amount of the compound of this invention is less than its effective amount would be where the additional therapeutic agent is not administered. In another embodiment, the effective amount of the additional therapeutic agent is less than its effective amount would be where the compound of this invention is not administered. In this way, undesired side effects associated with high doses of either agent may be minimized. Other potential advantages (including without limitation improved dosing regimens and/or reduced drug cost) will be apparent to those of skill in the art.
- the invention provides the use of a compound of Formula I alone or together with one or more of the above-described additional therapeutic agents in the manufacture of a medicament, either as a single composition or as separate dosage forms, for treatment in a subject of a disease, disorder or symptom set forth above.
- Another aspect of the invention is a compound of Formula I for use in the treatment in a subject of a disease, disorder or symptom thereof delineated herein.
- the invention provides a compound (e.g., a compound of Formula I or a pharmaceutically acceptable salt thereof) or a pharmaceutical composition disclosed herein alone or in combination with one or more of the above-described additional therapeutic agents for use in treating human immunodeficiency virus (HIV).
- HIV human immunodeficiency virus
- the HIV is HIV-1.
- the subject is a virologically suppressed HIV-1-infected subject.
- the subject is HIV-1 infected, antiretroviral treatment-naive subject.
- the compound or the pharmaceutical composition disclosed herein is used in combination with an effective amount of
- Xenotech, LLC (Lenexa, KS).
- ⁇ -nicotinamide adenine dinucleotide phosphate, reduced form (NADPH), magnesium chloride (MgCl 2 ), and dimethyl sulfoxide (DMSO) are purchased from Sigma-Aldrich.
- 7.5 mM stock solutions of test compounds are prepared in DMSO.
- the 7.5 mM stock solutions are diluted to 12.5-50 ⁇ M in acetonitrile (ACN).
- ACN acetonitrile
- the 20 mg/mL human liver microsomes are diluted to 0.625 mg/mL in 0.1 M potassium phosphate buffer, pH 7.4, containing 3 mM MgCl 2 .
- the diluted microsomes are added to wells of a 96-well deep-well polypropylene plate in triplicate.
- a 10 ⁇ L aliquot of the 12.5-50 ⁇ M test compound is added to the microsomes and the mixture is pre-warmed for 10 minutes. Reactions are initiated by addition of pre-warmed NADPH solution.
- the final reaction volume is 0.5 mL and contains 0.5 mg/mL human liver microsomes, 0.25-1.0 ⁇ M test compound, and 2 mM NADPH in 0.1 M potassium phosphate buffer, pH 7.4, and 3 mM MgCl 2 .
- the reaction mixtures are incubated at 37 °C, and 50 ⁇ L aliquots are removed at 0, 5, 10, 20, and 30 minutes and added to shallow-well 96-well plates which contain 50 ⁇ L of ice- cold ACN with internal standard to stop the reactions.
- the plates are stored at 4 °C for 20 minutes after which 100 ⁇ L of water is added to the wells of the plate before centrifugation to pellet precipitated proteins.
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Abstract
This invention relates to deuterated forms of bictegravir, and pharmaceutically acceptable salts thereof. In one aspect, the invention provides a compound of Formula (I) or a pharmaceutically acceptable salt thereof, wherein each of Y1, Y2, Y3, Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, Y8, Y9, Y10a, Y10b, Y11a, and Y11b is independently hydrogen or deuterium; provided that if each Y1, Y2, Y3, Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, Y8, Y9, Y10a, Y10b, and Y11 is hydrogen, then Y11b is deuterium.
Description
DEUTERATED BICTEGRAVIR CROSS-REFERENCE TO RELATED APPLICATIONS
[1] This application claims the benefit of the filing date of U.S. Provisional Application No.62/355,105, filed June 27, 2016, the entire content of which is incorporated herein by reference. BACKGROUND OF THE INVENTION
[2] Many current medicines suffer from poor absorption, distribution, metabolism and/or excretion (ADME) properties that prevent their wider use or limit their use in certain indications. Poor ADME properties are also a major reason for the failure of drug candidates in clinical trials. While formulation technologies and prodrug strategies can be employed in some cases to improve certain ADME properties, these approaches often fail to address the underlying ADME problems that exist for many drugs and drug candidates. One such problem is rapid metabolism that causes a number of drugs, which otherwise would be highly effective in treating a disease, to be cleared too rapidly from the body. A possible solution to rapid drug clearance is frequent or high dosing to attain a sufficiently high plasma level of drug. This, however, introduces a number of potential treatment problems such as poor patient compliance with the dosing regimen, side effects that become more acute with higher doses, and increased cost of treatment. A rapidly metabolized drug may also expose patients to undesirable toxic or reactive metabolites.
[3] Another ADME limitation that affects many medicines is the formation of toxic or biologically reactive metabolites. As a result, some patients receiving the drug may experience toxicities, or the safe dosing of such drugs may be limited such that patients receive a suboptimal amount of the active agent. In certain cases, modifying dosing intervals or formulation approaches can help to reduce clinical adverse effects, but often the formation of such undesirable metabolites is intrinsic to the metabolism of the compound.
[4] In some select cases, a metabolic inhibitor will be co-administered with a drug that is cleared too rapidly. Such is the case with the protease inhibitor class of drugs that are used to treat HIV infection. The FDA recommends that these drugs be co-dosed with ritonavir, an inhibitor of cytochrome P450 enzyme 3A4 (CYP3A4), the enzyme typically responsible for their metabolism (see Kempf, D.J. et al., Antimicrobial agents and chemotherapy, 1997, 41(3): 654-60). Ritonavir, however, causes adverse effects and adds to the pill burden for HIV patients who must already take a combination of different drugs. Similarly, the
CYP2D6 inhibitor quinidine has been added to dextromethorphan for the purpose of reducing rapid CYP2D6 metabolism of dextromethorphan in a treatment of pseudobulbar affect. Quinidine, however, has unwanted side effects that greatly limit its use in potential combination therapy (see Wang, L et al., Clinical Pharmacology and Therapeutics, 1994, 56(6 Pt 1): 659-67; and FDA label for quinidine at www.accessdata.fda.gov).
[5] In general, combining drugs with cytochrome P450 inhibitors is not a satisfactory strategy for decreasing drug clearance. The inhibition of a CYP enzyme’s activity can affect the metabolism and clearance of other drugs metabolized by that same enzyme. CYP inhibition can cause other drugs to accumulate in the body to toxic levels.
[6] A potentially attractive strategy for improving a drug’s metabolic properties is deuterium modification. In this approach, one attempts to slow the CYP-mediated metabolism of a drug or to reduce the formation of undesirable metabolites by replacing one or more hydrogen atoms with deuterium atoms. Deuterium is a safe, stable, non-radioactive isotope of hydrogen. Compared to hydrogen, deuterium forms stronger bonds with carbon. In select cases, the increased bond strength imparted by deuterium can positively impact the ADME properties of a drug, creating the potential for improved drug efficacy, safety, and/or tolerability. At the same time, because the size and shape of deuterium are essentially identical to those of hydrogen, replacement of hydrogen by deuterium would not be expected to affect the biochemical potency and selectivity of the drug as compared to the original chemical entity that contains only hydrogen.
[7] Over the past 35 years, the effects of deuterium substitution on the rate of metabolism have been reported for a very small percentage of approved drugs (see, e.g., Blake, MI et al, J Pharm Sci, 1975, 64:367-91; Foster, AB, Adv Drug Res 1985, 14:1-40 (“Foster”); Kushner, DJ et al, Can J Physiol Pharmacol 1999, 79-88; Fisher, MB et al, Curr Opin Drug Discov Devel, 2006, 9:101-09 (“Fisher”)). The results have been variable and unpredictable. For some compounds deuteration caused decreased metabolic clearance in vivo. For others, there was no change in metabolism. Still others demonstrated increased metabolic clearance. The variability in deuterium effects has also led experts to question or dismiss deuterium modification as a viable drug design strategy for inhibiting adverse metabolism (see Foster at p.35 and Fisher at p.101).
[8] The effects of deuterium modification on a drug’s metabolic properties are not predictable even when deuterium atoms are incorporated at known sites of metabolism. Only by actually preparing and testing a deuterated drug can one determine if and how the rate of metabolism will differ from that of its non-deuterated counterpart. See, for example, Fukuto
et al. (J. Med. Chem.1991, 34, 2871-76). Many drugs have multiple sites where metabolism is possible. The site(s) where deuterium substitution is required and the extent of deuteration necessary to see an effect on metabolism, if any, will be different for each drug. SUMMARY OF THE INVENTION
[9] This invention relates to deuterated forms of bictegravir, and pharmaceutically acceptable salts thereof. In one aspect, the invention provides a compound of Formula I:
acceptable salt thereof, wherein each of Y1, Y2, Y3, Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, Y8, Y9, Y10a, Y10b, Y11a, and Y11b is independently hydrogen or deuterium; provided that if each Y1, Y2, Y3, Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, Y8, Y9, Y10a, Y10b, and Y11a is hydrogen, then Y11b is deuterium.
[10] This invention also provides compositions comprising a compound of this invention, including pharmaceutical compositions comprising a compound of this invention and a pharmaceutically acceptable carrier. This invention also provides the use of such compounds and compositions in methods of treating diseases and conditions that are beneficially treated by administering a human immunodeficiency virus (HIV) integrase. In one embodiment, the invention provides a method of inhibiting human immunodeficiency virus (HIV) integrase activity in a cell, comprising contacting a cell with one or more compounds of Formula I herein, or a pharmaceutically acceptable salt thereof.
[11] Some exemplary embodiments include a method of treating human
immunodeficiency virus (HIV) that is beneficially treated by Formula I in a subject in need thereof, comprising the step of administering to the subject an effective amount of a compound or a composition of this invention. DETAILED DESCRIPTION OF THE INVENTION
[12] Bictegravir, also known by the chemical name (2R,5S,13aR)-8-hydroxy-7,9-dioxo-N- (2,4,6-trifluorobenzyl)-2,3,4,5,7,9,13- ,13a-octahydro-2,5-
methanopyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazepine-1-0-carboxamide, and by the code names GS-9883 and GS-9883-001, is a potent HIV integrase inhibitor that causes a rapid reduction of HIV viral load in humans.
[13] Bictegravir is currently in Phase III clinical trials for the treatment of HIV-1 infection, and is currently being tested for safety and efficacy in the antiretroviral treatment of HIV- infected adults as part of a fixed-dose combination with emtricitabine/tenofovir alafenamide.
[14] Despite the beneficial activities of bictegravir, there is a continuing need for new compounds to treat the aforementioned diseases and conditions. Definitions
[15] The term“treat” means decrease, suppress, attenuate, diminish, arrest, or stabilize the development or progression of a disease (e.g., a disease or disorder delineated herein), lessen the severity of the disease or improve the symptoms associated with the disease.
[16] “Disease” means any condition or disorder that damages or interferes with the normal function of a cell, tissue, or organ.
[17] As used herein, the term“subject” includes humans and non-human mammals. Non- limiting examples of non-human mammals include mice, rats, guinea pigs, rabbits, dogs, cats, monkeys, apes, pigs, cows, sheep, horses, etc.
[18] “The term“alkyl” refers to a monovalent saturated hydrocarbon group. C1-C 6 alkyl is an alkyl having from 1 to 6 carbon atoms. An alkyl may be linear or branched. Examples of alkyl groups include methyl; ethyl; propyl, including n-propyl and isopropyl; butyl, including n-butyl, isobutyl, sec-butyl, and t-butyl; pentyl, including, for example, n-pentyl, isopentyl, and neopentyl; and hexyl, including, for example, n-hexyl and 2-methylpentyl.
[19] It will be recognized that some variation of natural isotopic abundance occurs in a synthesized compound depending upon the origin of chemical materials used in the synthesis. Thus, a preparation of bictegravir will inherently contain small amounts of deuterated isotopologues. The concentration of naturally abundant stable hydrogen and carbon isotopes, notwithstanding this variation, is small and immaterial as compared to the degree of stable isotopic substitution of compounds of this invention. See, for instance, Wada, E et al., Seikagaku, 1994, 66:15; Gannes, LZ et al., Comp Biochem Physiol Mol Integr Physiol, 1998, 119:725.
[20] In the compounds of this invention any atom not specifically designated as a particular isotope is meant to represent any stable isotope of that atom. Unless otherwise stated, when a position is designated specifically as“H” or“hydrogen”, the position is
understood to have hydrogen at its natural abundance isotopic composition. In some embodiments, when a position is designated specifically as“H” or“hydrogen”, the position is at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% hydrogen. In some embodiments, when a position is designated specifically as“H” or“hydrogen”, the position incorporates≤10% deuterium,≤5% deuterium,≤4% deuterium,≤3% deuterium, ≤2% deuterium, or≤1% deuterium. Also unless otherwise stated, when a position is designated specifically as“D” or“deuterium”, the position is understood to have deuterium at an abundance that is at least 3340 times greater than the natural abundance of deuterium, which is 0.015% (i.e., at least 50.1% incorporation of deuterium).
[21] The term“isotopic enrichment factor” as used herein means the ratio between the isotopic abundance and the natural abundance of a specified isotope.
[22] In other embodiments, a compound of this invention has an isotopic enrichment factor for each designated deuterium atom of at least 3500 (52.5% deuterium incorporation at each designated deuterium atom), at least 4000 (60% deuterium incorporation), at least 4500 (67.5% deuterium incorporation), at least 5000 (75% deuterium), at least 5500 (82.5% deuterium incorporation), at least 6000 (90% deuterium incorporation), at least 6333.3 (95% deuterium incorporation), at least 6466.7 (97% deuterium incorporation), at least 6600 (99% deuterium incorporation), or at least 6633.3 (99.5% deuterium incorporation).
[23] In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 52.5%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 60%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 67.5%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 75%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 82.5%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 90%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 95%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 97.5%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 99%. In some embodiments, in a compound of this invention, each designated deuterium atom has deuterium incorporation of at least 99.5%.
[24] The term“isotopologue” refers to a species in which the chemical structure differs from a specific compound of this invention only in the isotopic composition thereof.
[25] The term“compound,” when referring to a compound of this invention, refers to a collection of molecules having an identical chemical structure, except that there may be isotopic variation among the constituent atoms of the molecules. Thus, it will be clear to those of skill in the art that a compound represented by a particular chemical structure containing indicated deuterium atoms, will also contain lesser amounts of isotopologues having hydrogen atoms at one or more of the designated deuterium positions in that structure. The relative amount of such isotopologues in a compound of this invention will depend upon a number of factors including the isotopic purity of deuterated reagents used to make the compound and the efficiency of incorporation of deuterium in the various synthesis steps used to prepare the compound.
[26] The invention also provides salts of the compounds of the invention.
[27] A salt of a compound of this invention is formed between an acid and a basic group of the compound, such as an amino functional group, or a base and an acidic group of the compound, such as a carboxyl functional group. According to one embodiment, the compound is a pharmaceutically acceptable acid addition salt. In one embodiment the acid addition salt may be a deuterated acid addition salt.
[28] The term“pharmaceutically acceptable,” as used herein, refers to a component that is, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and other mammals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio. A“pharmaceutically acceptable salt” means any non-toxic salt that, upon administration to a recipient, is capable of providing, either directly or indirectly, a compound of this invention. A“pharmaceutically acceptable counterion” is an ionic portion of a salt that is not toxic when released from the salt upon administration to a recipient.
[29] Acids commonly employed to form pharmaceutically acceptable salts include inorganic acids such as hydrogen bisulfide, hydrochloric acid, hydrobromic acid, hydroiodic acid, sulfuric acid and phosphoric acid, as well as organic acids such as para-toluenesulfonic acid, salicylic acid, tartaric acid, bitartaric acid, ascorbic acid, maleic acid, besylic acid, fumaric acid, gluconic acid, glucuronic acid, formic acid, glutamic acid, methanesulfonic acid, ethanesulfonic acid, benzenesulfonic acid, lactic acid, oxalic acid, para- bromophenylsulfonic acid, carbonic acid, succinic acid, citric acid, benzoic acid and acetic acid, as well as related inorganic and organic acids. Such pharmaceutically acceptable salts
thus include sulfate, pyrosulfate, bisulfate, sulfite, bisulfite, phosphate, monohydrogenphosphate, dihydrogenphosphate, metaphosphate, pyrophosphate, chloride, bromide, iodide, acetate, propionate, decanoate, caprylate, acrylate, formate, isobutyrate, caprate, heptanoate, propiolate, oxalate, malonate, succinate, suberate, sebacate, fumarate, maleate, butyne-1,4-dioate, hexyne-l,6-dioate, benzoate, chlorobenzoate, methylbenzoate, dinitrobenzoate, hydroxybenzoate, methoxybenzoate, phthalate, terephthalate, sulfonate, xylene sulfonate, phenylacetate, phenylpropionate, phenylbutyrate, citrate, lactate, β- hydroxybutyrate, glycolate, maleate, tartrate, methanesulfonate, propanesulfonate, naphthalene-1-sulfonate, naphthalene-2- sulfonate, mandelate and other salts. In one embodiment, pharmaceutically acceptable acid addition salts include those formed with mineral acids such as hydrochloric acid and hydrobromic acid, and especially those formed with organic acids such as maleic acid. In one embodiment, the acids commonly employed to form pharmaceutically acceptable salts include the above-listed inorganic acids, wherein at least one hydrogen is replaced with deuterium.
[30] The pharmaceutically acceptable salt may also be a salt of a compound of the present invention having an acidic functional group, such as a carboxylic acid functional group, and a base. Exemplary bases include, but are not limited to, hydroxide of alkali metals including sodium, potassium, and lithium; hydroxides of alkaline earth metals such as calcium and magnesium; hydroxides of other metals, such as aluminum and zinc; ammonia, organic amines such as unsubstituted or hydroxyl-substituted mono-, di-, or tri-alkylamines, dicyclohexylamine; tributyl amine; pyridine; N-methyl, N-ethylamine; diethylamine;
triethylamine; mono-, bis-, or tris-(2-OH-(C1-C6)-alkylamine), such as N,N-dimethyl-N-(2- hydroxyethyl)amine or tri-(2-hydroxyethyl)amine; N-methyl-D-glucamine; morpholine; thiomorpholine; piperidine; pyrrolidine; and amino acids such as arginine, lysine, and the like.
[31] In a specific embodiment, the pharmaceutically acceptable salt is a sodium salt.
[32] The compounds of the present invention (e.g., compounds of Formula I), may contain an asymmetric carbon atom, for example, as the result of deuterium substitution or otherwise. As such, compounds of this invention can exist as either individual enantiomers, or mixtures of the two enantiomers. Accordingly, a compound of the present invention may exist as either a racemic mixture or a scalemic mixture, or as individual respective stereoisomers that are substantially free from another possible stereoisomer.“Stereoisomer” refers to both enantiomers and diastereomers. The term“substantially free of other stereoisomers” as used herein means less than 25% of other stereoisomers, preferably less than 10% of other
stereoisomers, more preferably less than 5% of other stereoisomers and most preferably less than 2% of other stereoisomers are present. Methods of obtaining or synthesizing an individual enantiomer for a given compound are known in the art and may be applied as practicable to final compounds or to starting material or intermediates.
[33] Unless otherwise indicated, when a disclosed compound is named or depicted by a structure without specifying the stereochemistry and has one or more chiral centers, it is understood to represent all possible stereoisomers of the compound.
[34] The term“stable compounds,” as used herein, refers to compounds which possess stability sufficient to allow for their manufacture and which maintain the integrity of the compound for a sufficient period of time to be useful for the purposes detailed herein (e.g., formulation into therapeutic products, intermediates for use in production of therapeutic compounds, isolatable or storable intermediate compounds, treating a disease or condition responsive to therapeutic agents).
[35] “D” and“d” both refer to deuterium.“Tert” and“t-” each refer to tertiary.“US” refers to the United States of America.
[36] “Substituted with deuterium” refers to the replacement of one or more hydrogen atoms with a corresponding number of deuterium atoms.
[37] Throughout this specification, a variable may be referred to generally (e.g., "each Y") or may be referred to specifically (e.g., Y1, Y2, Y3, etc.). Unless otherwise indicated, when a variable is referred to generally, it is meant to include all specific embodiments of that particular variable. Therapeutic Compounds
[38] Certain aspects of the present invention provide a compound of Formula I:
or a pharmaceutically acceptable salt thereof, wherein: each of Y1, Y2, Y3, Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, Y8, Y9, Y10a, Y10b, Y11a, and Y11b is independently hydrogen or deuterium; provided that if each Y1, Y2, Y3, Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, Y8, Y9, Y10a, Y10b, and Y11a is hydrogen, then Y11b is deuterium.
[39] In some embodiments of a compound of Formula I, at least one of Y1, Y2, Y3, Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, Y8, Y9, Y10a, Y10b, Y11a, and Y11b is hydrogen. In some embodiments of a compound of Formula I, at least one of Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, Y8, Y9, Y10a, Y10b, Y11a, and Y11b is hydrogen.
[40] In some embodiments of a compound of Formula I, Y1, Y2, and Y3 are the same. In one aspect, Y1, Y2, and Y3 are hydrogen. Alternatively, Y1, Y2, and Y3 are deuterium.
[41] In some embodiments the compound of Formula I has the structure of Formula 1A:
or a pharmaceutically acceptable salt thereof.
[42] In another embodiment of a compound of Formula I or Formula IA, Y4a and Y4b are the same. In one aspect, Y4a and Y4b are hydrogen. Alternatively, Y4a and Y4b are deuterium.
[43] In another embodiment of a compound of Formula I or Formula IA, Y5a and Y5b are the same. In one aspect, Y5a and Y5b are hydrogen. Alternatively, Y5a and Y5b are deuterium.
[44] In some embodiments of a compound of Formula I or Formula IA, Y4a, Y4b, Y5a, and Y5b are the same. In one aspect, Y4a, Y4b, Y5a, and Y5b are hydrogen. Alternatively, Y4a, Y4b, Y5a, and Y5b are deuterium. In some embodiments of a compound of Formula I or Formula IA, Y4a and Y4b are the same and Y5a, and Y5b are the same. In one aspect, Y4a and Y4b are hydrogen and Y5a and Y5b are deuterium. In one aspect, Y4a and Y4b are deuterium and Y5a and Y5b are hydrogen.
[45] Alternatively, one of Y4a and Y4b is hydrogen and the other is deuterium; and one of Y5a and Y5b is hydrogen and the other is deuterium. Alternatively, both of Y4a and Y4b are hydrogen; and one of Y5a and Y5b is hydrogen and the other is deuterium. Alternatively, both of Y4a and Y4b are deuterium; and one of Y5a and Y5b is hydrogen and the other is deuterium. Alternatively, both of Y5a and Y5b are hydrogen; and one of Y4a and Y4b is hydrogen and the other is deuterium. Alternatively, both of Y5a and Y5b are deuterium; and one of Y4a and Y4b is hydrogen and the other is deuterium.
[46] In some embodiments of a compound of Formula I or Formula IA, Y6 is hydrogen. Alternatively, Y6 is deuterium.
[47] In some embodiments of a compound of Formula I or Formula IA, Y7a and Y7b are the same. In one aspect, Y7a and Y7b are hydrogen. Alternatively, Y7a and Y7b are deuterium. In some embodiments, one of Y7a and Y7b is hydrogen the other is deuterium.
[48] In some embodiments of a compound of Formula I or Formula IA, Y8 is hydrogen. Alternatively, Y8 is deuterium.
[49] In another embodiment of a compound of Formula I or Formula IA, Y6 and Y8 are the same. In one aspect, Y6 and Y8 are hydrogen. Alternatively, Y6 and Y8 are deuterium. In some embodiments, Y6 is different than Y8. In one aspect, Y6 is hydrogen and Y8 is deuterium. Alternatively, Y6 is deuterium and Y8 is hydrogen.
[50] In some embodiments of a compound of Formula I or Formula
[51] In some embodiments of a compound of Formula I or Formula IA, Y6 is hydrogen, Y7a and Y7b are hydrogen, and Y8 is hydrogen. Alternatively, Y6 is hydrogen, Y7a and Y7b are hydrogen, and Y8 is deuterium. Alternatively, Y6 is hydrogen, Y7a and Y7b are deuterium, and Y8 is deuterium. Alternatively, Y6 is hydrogen, Y7a and Y7b are deuterium, and Y8 is hydrogen. Alternatively, Y6 is deuterium, Y7a and Y7b are deuterium, and Y8 is deuterium. Alternatively, Y6 is deuterium, Y7a and Y7b are deuterium, and Y8 is hydrogen. Alternatively, Y6 is deuterium, Y7a and Y7b are hydrogen, and Y8 is deuterium. Alternatively, Y6 is deuterium, Y7a and Y7b are hydrogen, and Y8 is hydrogen.
[52] In some embodiments of a compound of Formula I or Formula IA, Y9 is hydrogen. Alternatively, Y9 is deuterium.
[53] In some embodiments of a compound of Formula I or Formula IA, Y10a and Y10b are hydrogen. Alternatively, Y10a and Y10b are deuterium. In one aspect, one of Y10a and Y10b is hydrogen, and the other is deuterium.
[54] In some embodiments of a compound of Formula I or Formula IA, Y9 is hydrogen and Y10a and Y10b are hydrogen. Alternatively, Y9 is hydrogen, Y10a and Y10b are deuterium. Alternatively, Y9 is deuterium, and Y10a and Y10b are hydrogen. Alternatively, Y9 is deuterium, and Y10a and Y10b are deuterium.
[55] In another embodiment of a compound of Formula I or Formula IA, Y11a and Y11b are the same. In one aspect, Y11a and Y11b are hydrogen. Alternatively, Y11a and Y11b are deuterium. In some embodiments, one of Y11a and Y11b is hydrogen, and the other is deuterium.
[56] In some embodiments, the compound is a compound of Formula I, wherein Y , Y , and Y are hydrogen, and the compound is selected from any one of the compounds set forth in Table 1 below:
Table 1 : Exemplary Embodiments of Formula I
or a pharmaceutically acceptable salt thereof, wherein any atom not designated as deuterium is present at its natural isotopic abundance.
[57] In some embodiments, the compound is a compound of Formula I, wherein Y , Y , and Y are deuterium, and the compound is selected from any one of the compounds set forth in Table 2 below:
Table 2: Exemplary Embodiments of Formula I
or a pharmaceutically acceptable salt thereof, wherein any atom not designated as deuterium is present at its natural isotopic abundance.
[58] In some embodiments of a compound of this invention, when Y1 is deuterium, the level of deuterium incorporation at each Y1 is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
[59] In some embodiments of a compound of this invention, when Y2 is deuterium, the level of deuterium incorporation at each Y2 is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
[60] In some embodiments of a compound of this invention, when Y3 is deuterium, the level of deuterium incorporation at each Y3 is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
[61] In some embodiments of a compound of this invention, when Y4a or Y4b is deuterium, the level of deuterium incorporation at each Y4a or Y4b is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
[62] In some embodiments of a compound of this invention, when Y5a or Y5b is deuterium, the level of deuterium incorporation at each Y5a or Y5b is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
[63] In some embodiments of a compound of this invention, when Y6 is deuterium, the level of deuterium incorporation at each Y6 is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
[64] In some embodiments of a compound of this invention, when Y7a or Y7b is deuterium, the level of deuterium incorporation at each Y7a or Y7b is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
[65] In some embodiments of a compound of this invention, when Y8 is deuterium, the level of deuterium incorporation at each Y8 is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
[66] In some embodiments of a compound of this invention, when Y9 is deuterium, the level of deuterium incorporation at each Y9 is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
[67] In some embodiments of a compound of this invention, when Y10a or Y10b is deuterium, the level of deuterium incorporation at each Y10a or Y10b is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
[68] In some embodiments of a compound of this invention, when Y11a or Y11b is deuterium, the level of deuterium incorporation at each Y11a or Y11b is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
[69] In another set of embodiments, any atom not designated as deuterium in any of the embodiments set forth herein is present at its natural isotopic abundance.
[70] In some embodiments of a compound of this invention, deuterium incorporation at each designated deuterium atom is at least 52.5%, at least 75%, at least 82.5%, at least 90%, at least 95%, at least 97%, or at least 99%.
[71] In some embodiments of a compound of this invention, at least one of Y1, Y2, Y3, Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, Y8, Y9, Y10a, Y10b, Y11a, and Y11b is hydrogen. Exemplary Synthesis
[72] Deuterium-modified analogs of bictegravir can be synthesized by means known in the art of organic chemistry. For instance, using methods described in US Patent No.9,216,996 (Haolun J. et al., assigned to Gilead Sciences, Inc. and incorporated herein by reference), using deuterium-containing reagents provides the desired deuterated analogs.
[73] Such methods can be carried out utilizing corresponding deuterated and optionally, other isotope-containing reagents and/or intermediates to synthesize the compounds delineated herein, or invoking standard synthetic protocols known in the art for introducing isotopic atoms to a chemical structure.
[74] A convenient method for synthesizing compounds of Formula I is depicted in the Schemes below.
[75] A generic scheme for the synthesis of compounds of Formula I is shown in Scheme 1 above. In a manner analogous to the procedure described in Wang, H. et al. Org. Lett.2015, 17, 564-567, aldol condensation of compound 1 with appropriately deuterated compound 2 affords enamine 3. Enamine 3 is then reacted with primary amine 4 to afford enamine 5, which then undergoes cyclization with dimethyl oxalate followed by ester hydrolysis to provide carboxylic acid 7.
[76] In a manner analogous to the procedure described in US 9,216,996, acetal deprotection of carboxylic acid 7 followed by cyclization with appropriately deuterated aminocyclopentanol 9 provides carboxylic acid intermediate 10. Amide coupling with appropriately deuterated benzylamine 11 followed by deprotection of the methyl ether ultimately affords a compound of Formula I in eight overall steps from compound 1.
[77] Use of appropriately deuterated reagents allows deuterium incorporation at the Y1, Y2, Y3, Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, Y8, Y9, Y10a, Y10b, Y11a, and Y11b positions of a compound of Formula I or any appropriate intermediate herein, e.g., about 90%, about 95%, about 97%, about 98%, or about 99% deuterium incorporation at any Y1, Y2, Y3, Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, Y8, Y9, Y10a, Y10b, Y11a, and/or Y11b.
[78] Appropriately deuterated intermediates 2a and 2b, for use in the preparation of compounds of Formula I according to Scheme 1, may be prepared from corresponding deuterated reagents as exemplified in Scheme 2 below. S h 2 S th i f C d 2 d 2b
[79] Synthesis of compound 2a (wherein Y3=H) by acetal formation of N,N- dimethylformamide (DMF) with dimethylsulfate has been described in Mesnard, D. et. al. J. Organomet. Chem.1989, 373, 1-10. Replacing DMF with N,N-dimethylformamide-d1 (98- 99 atom % D; commercially available from Cambridge Isotope Laboratories) in this reaction would thereby provide compound 2b (wherein Y3=D).
[80] Use of appropriately deuterated reagents allows deuterium incorporation at the Y3 position of a compound of Formula I or any appropriate intermediate herein, e.g., about 90%, about 95%, about 97%, about 98%, or about 99% deuterium incorporation at Y3.
[81] Appropriately deuterated intermediates 4a-4d, for use in the preparation of compounds of Formula I according to Scheme 1, may be prepared from corresponding deuterated reagents as exemplified in Scheme 3 below.
[82] As described in Malik, M. S. et. al. Org. Prep. Proc. Int.1991, 26, 764-766, acetaldehyde is converted to alkylhalide 14a via reaction with chlorine gas and subsequent acetal protection with CaCl2 in methanol. As described in CN 103739506, reaction of 14a with aqueous ammonia and then sodium hydroxide provides primary amine 4a (wherein Y9=Y10a=Y10b=H). Replacing acetaldehyde with acetaldehyde-d1, acetaldehyde-2,2,2-d3, or acetaldehyde-d4 (all commercially available from CDN Isotopes with 98-99 atom % D) in the sequence then provides access to compounds 4b (Y9=D, Y10a=Y10b=H), 4c (Y9=H,
Y10a=Y10b=D) and 4d (Y9=Y10a=Y10b=D) respectively (Schemes 3b-d).
[83] Use of appropriately deuterated reagents allows deuterium incorporation at the Y9, Y10a, and Y10b positions of a compound of Formula I or any appropriate intermediate herein, e.g., about 90%, about 95%, about 97%, about 98%, or about 99% deuterium incorporation at any Y9, Y10a, and/or Y10b.
[84] Appropriately deuterated intermediates 9a-9d, for use in the preparation of compounds of Formula I according to Scheme 1, may be prepared from corresponding deuterated reagents as exemplified in Scheme 4 below.
[85] Following the procedures described by Gurjar, M. et. al. Heterocycles, 2009, 77, 909- 925, meso-diacetate 16a is prepared in 2 steps from cyclopentadiene. Desymmetrization of 16a is then achieved enzymatically by treatment with Lipase as described in Specklin, S. et. al. Tet. Lett.201455, 6987-6991, providing 17a which is subsequently converted to aminocyclopentanol 9a (wherein Y4a=Y4b=Y5a=Y5b=Y6=Y7a=Y7b=Y8=H) via a 3 step sequence as reported in WO 2015195656.
[86] As depicted in Scheme 4b, aminocyclopentanol 9b (Y4a=Y4b=Y5a=Y5b=Y6=Y7a=Y7b= Y8=D) is obtained through an analogous synthetic sequence using cyclopentadiene-d6 and performing the penultimate hydrogenation with D2 in place of H2. Cyclopentadiene-d6 is prepared according to the procedure described in Cangoenuel, A. et. al. Inorg. Chem.2013, 52, 11859-11866.
[87] Alternatively, as shown in Scheme 4c, the meso-diol obtained in Scheme 4a is oxidized to the diketone following the procedure reported by Rasmusson, G.H. et. al. Org. Syn.1962, 42, 36-38. Subsequent mono-reduction with sodium borodeuteride and CeCl3 then affords the D1-alcohol in analogy to the method described in WO 2001044254 for the all- protio analog using sodium borohydride. Reduction of the remaining ketone using similar conditions provides the meso-D2-diol in analogy to the method reported in Specklin, S. et. al. Tet. Lett.2014, 55, 6987-6991 for the all protio analog using sodium borohydride. The meso- D2-diol is then converted to 9c (Y4a=Y4b=Y5a=Y5b=Y7a=Y7b=H, Y6=Y8=D) following the same procedures outlined in Scheme 4a.
[88] Likewise, the meso-diol obtained in Scheme 4b may be converted to 9d
(Y4a=Y4b=Y5a=Y5b=Y7a=Y7b=D, Y6=Y8=H) in an analogous manner as depicted in Scheme 4d. The use of deuterated solvents such as D2O or MeOD may be considered to reduce the risk of D to H exchange for ketone containing intermediates.
[89] Use of appropriately deuterated reagents allows deuterium incorporation at the Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, and Y8 positions of a compound of Formula I or any appropriate intermediate herein, e.g., about 90%, about 95%, about 97%, about 98%, or about 99% deuterium incorporation at any Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, and/or Y8.
[90] Appropriately deuterated intermediates 11a-11d, for use in the preparation of compounds of Formula I according to Scheme 1, may be prepared from corresponding deuterated reagents exemplified in Scheme 5 below.
Scheme 5. Synthesis of Benzylamines 11a-11d
[91] Selective hydrodehalogenation of trichlorotrifluorobenzene according to the procedure reported in WO 2006111583 affords trifluorobenzene 18a. Benzylamine 11a (Y1=Y2=Y11a=Y11b=H) is then obtained via a four step sequence as decribed in CN 10461006. In an analogous manner, replacing DMF with DMF-d1 and KBH4 with NaBD4 in the sequence provides access to benzylamine 11b (Y1=Y2=H, Y11a=Y11b=D) as shown in Scheme 5b. Alternatively, performing the hydrodehalogenation with D2 instead of H2 provides trifluorobenze-d3 (18b), and provides access to 11c (Y1=Y2=D, Y11a=Y11b=H), as depicted in Scheme 5c. Furthermore, combining the approaches of Schemes 5b and 5c allows for the production of benzylamine-d4 (11d, Y1=Y2=Y11a=Y11b=D), as depicted in Scheme 5d.
[92] Use of appropriately deuterated reagents allows deuterium incorporation at the Y1, Y2, Y11a, and Y11b positions of a compound of Formula I or any appropriate intermediate herein,
e.g., about 90%, about 95%, about 97%, about 98%, or about 99% deuterium incorporation at any Y1, Y2, Y11a, and/or Y11b.
[93] The specific approaches and compounds shown above are not intended to be limiting. The chemical structures in the schemes herein depict variables that are hereby defined commensurately with chemical group definitions (moieties, atoms, etc.) of the corresponding position in the compound formulae herein, whether identified by the same variable name (i.e., R1, R2, R3, etc.) or not. The suitability of a chemical group in a compound structure for use in the synthesis of another compound is within the knowledge of one of ordinary skill in the art.
[94] Additional methods of synthesizing compounds of Formula I and their synthetic precursors, including those within routes not explicitly shown in schemes herein, are within the means of chemists of ordinary skill in the art. Synthetic chemistry transformations and protecting group methodologies (protection and deprotection) useful in synthesizing the applicable compounds are known in the art and include, for example, those described in Larock R, Comprehensive Organic Transformations, VCH Publishers (1989); Greene, TW et al., Protective Groups in Organic Synthesis, 3rd Ed., John Wiley and Sons (1999); Fieser, L et al., Fieser and Fieser’s Reagents for Organic Synthesis, John Wiley and Sons (1994); and Paquette, L, ed., Encyclopedia of Reagents for Organic Synthesis, John Wiley and Sons (1995) and subsequent editions thereof.
[95] Combinations of substituents and variables envisioned by this invention are only those that result in the formation of stable compounds. Compositions
[96] The invention also provides pharmaceutical compositions comprising an effective amount of a compound of Formula I (e.g., including any of the formulae herein), or a pharmaceutically acceptable salt of said compound; and a pharmaceutically acceptable carrier. The carrier(s) are“acceptable” in the sense of being compatible with the other ingredients of the formulation and, in the case of a pharmaceutically acceptable carrier, not deleterious to the recipient thereof in an amount used in the medicament.
[97] Pharmaceutically acceptable carriers, adjuvants, excipients and vehicles that may be used in the pharmaceutical compositions of this invention include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins, such as human serum albumin, buffer substances such as phosphates (e.g., phosphate-buffered saline, etc.), glycine, sorbic acid, potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes, such as protamine sulfate, disodium hydrogen phosphate,
potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, cellulose-based substances, polyethylene glycol, sodium carboxymethylcellulose, polyacrylates, waxes, polyethylene-polyoxypropylene-block polymers, polyethylene glycol and wool fat.
[98] If required, the solubility and bioavailability of the compounds of the present invention in pharmaceutical compositions may be enhanced by methods well-known in the art. One method includes the use of lipid excipients in the formulation. See“Oral Lipid- Based Formulations: Enhancing the Bioavailability of Poorly Water-Soluble Drugs (Drugs and the Pharmaceutical Sciences),” David J. Hauss, ed. Informa Healthcare, 2007; and“Role of Lipid Excipients in Modifying Oral and Parenteral Drug Delivery: Basic Principles and Biological Examples,” Kishor M. Wasan, ed. Wiley-Interscience, 2006.
[99] Another known method of enhancing bioavailability is the use of an amorphous form of a compound of this invention optionally formulated with a poloxamer, such as LUTROLTM and PLURONICTM (BASF Corporation), or block copolymers of ethylene oxide and propylene oxide. See United States patent 7,014,866; and United States patent publications 20060094744 and 20060079502.
[100] The pharmaceutical compositions of the invention include those suitable for oral, rectal, nasal, topical (including buccal and sublingual), vaginal or parenteral (including subcutaneous, intramuscular, intravenous and intradermal) administration. In certain embodiments, the compound of the formulae herein is administered transdermally (e.g., using a transdermal patch or iontophoretic techniques). Other formulations may conveniently be presented in unit dosage form, e.g., tablets, sustained release capsules, and in liposomes, and may be prepared by any methods well known in the art of pharmacy. See, for example, Remington: The Science and Practice of Pharmacy, Lippincott Williams & Wilkins, Baltimore, MD (20th ed.2000).
[101] Such preparative methods include the step of bringing into association with the molecule to be administered ingredients such as the carrier that constitutes one or more accessory ingredients. In general, the compositions are prepared by uniformly and intimately bringing into association the active ingredients with liquid carriers, liposomes or finely divided solid carriers, or both, and then, if necessary, shaping the product.
[102] In certain embodiments, the compound is administered orally. Compositions of the present invention suitable for oral administration may be presented as discrete units such as capsules, sachets, or tablets each containing a predetermined amount of the active ingredient; a powder or granules; a solution or a suspension in an aqueous liquid or a non-aqueous liquid;
an oil-in-water liquid emulsion; a water-in-oil liquid emulsion; packed in liposomes; or as a bolus, etc. Soft gelatin capsules can be useful for containing such suspensions, which may beneficially increase the rate of compound absorption.
[103] In the case of tablets for oral use, carriers that are commonly used include lactose and corn starch. Lubricating agents, such as magnesium stearate, are also typically added. For oral administration in a capsule form, useful diluents include lactose and dried cornstarch. When aqueous suspensions are administered orally, the active ingredient is combined with emulsifying and suspending agents. If desired, certain sweetening and/or flavoring and/or coloring agents may be added.
[104] Compositions suitable for oral administration include lozenges comprising the ingredients in a flavored basis, usually sucrose and acacia or tragacanth; and pastilles comprising the active ingredient in an inert basis such as gelatin and glycerin, or sucrose and acacia.
[105] Compositions suitable for parenteral administration include aqueous and non-aqueous sterile injection solutions which may contain anti-oxidants, buffers, bacteriostats and solutes which render the formulation isotonic with the blood of the intended recipient; and aqueous and non-aqueous sterile suspensions which may include suspending agents and thickening agents. The formulations may be presented in unit-dose or multi-dose containers, for example, sealed ampules and vials, and may be stored in a freeze dried (lyophilized) condition requiring only the addition of the sterile liquid carrier, for example water for injections, immediately prior to use. Extemporaneous injection solutions and suspensions may be prepared from sterile powders, granules and tablets.
[106] Such injection solutions may be in the form, for example, of a sterile injectable aqueous or oleaginous suspension. This suspension may be formulated according to techniques known in the art using suitable dispersing or wetting agents (such as, for example, Tween 80) and suspending agents. The sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally-acceptable diluent or solvent, for example, as a solution in 1,3-butanediol. Among the acceptable vehicles and solvents that may be employed are mannitol, water, Ringer's solution and isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium. For this purpose, any bland fixed oil may be employed including synthetic mono- or diglycerides. Fatty acids, such as oleic acid and its glyceride derivatives are useful in the preparation of injectables, as are natural pharmaceutically-acceptable oils,
such as olive oil or castor oil, especially in their polyoxyethylated versions. These oil solutions or suspensions may also contain a long-chain alcohol diluent or dispersant.
[107] The pharmaceutical compositions of this invention may be administered in the form of suppositories for rectal administration. These compositions can be prepared by mixing a compound of this invention with a suitable non-irritating excipient which is solid at room temperature but liquid at the rectal temperature and therefore will melt in the rectum to release the active components. Such materials include, but are not limited to, cocoa butter, beeswax and polyethylene glycols.
[108] The pharmaceutical compositions of this invention may be administered by nasal aerosol or inhalation. Such compositions are prepared according to techniques well-known in the art of pharmaceutical formulation and may be prepared as solutions in saline, employing benzyl alcohol or other suitable preservatives, absorption promoters to enhance
bioavailability, fluorocarbons, and/or other solubilizing or dispersing agents known in the art. See, e.g.: Rabinowitz JD and Zaffaroni AC, US Patent 6,803,031, assigned to Alexza Molecular Delivery Corporation.
[109] Topical administration of the pharmaceutical compositions of this invention is especially useful when the desired treatment involves areas or organs readily accessible by topical application. For topical application topically to the skin, the pharmaceutical composition should be formulated with a suitable ointment containing the active components suspended or dissolved in a carrier. Carriers for topical administration of the compounds of this invention include, but are not limited to, mineral oil, liquid petroleum, white petroleum, propylene glycol, polyoxyethylene polyoxypropylene compound, emulsifying wax, and water. Alternatively, the pharmaceutical composition can be formulated with a suitable lotion or cream containing the active compound suspended or dissolved in a carrier. Suitable carriers include, but are not limited to, mineral oil, sorbitan monostearate, polysorbate 60, cetyl esters wax, cetearyl alcohol, 2-octyldodecanol, benzyl alcohol, and water. The pharmaceutical compositions of this invention may also be topically applied to the lower intestinal tract by rectal suppository formulation or in a suitable enema formulation.
Topically-transdermal patches and iontophoretic administration are also included in this invention.
[110] Application of the subject therapeutics may be local, so as to be administered at the site of interest. Various techniques can be used for providing the subject compositions at the site of interest, such as injection, use of catheters, trocars, projectiles, pluronic gel, stents, sustained drug release polymers or other device which provides for internal access.
[111] Thus, according to yet another embodiment, the compounds of this invention may be incorporated into compositions for coating an implantable medical device, such as prostheses, artificial valves, vascular grafts, stents, or catheters. Suitable coatings and the general preparation of coated implantable devices are known in the art and are exemplified in US Patents 6,099,562; 5,886,026; and 5,304,121. The coatings are typically biocompatible polymeric materials such as a hydrogel polymer, polymethyldisiloxane, polycaprolactone, polyethylene glycol, polylactic acid, ethylene vinyl acetate, and mixtures thereof. The coatings may optionally be further covered by a suitable topcoat of fluorosilicone, polysaccharides, polyethylene glycol, phospholipids or combinations thereof to impart controlled release characteristics in the composition. Coatings for invasive devices are to be included within the definition of pharmaceutically acceptable carrier, adjuvant or vehicle, as those terms are used herein.
[112] According to another embodiment, the invention provides a method of coating an implantable medical device comprising the step of contacting said device with the coating composition described above. It will be obvious to those skilled in the art that the coating of the device will occur prior to implantation into a mammal.
[113] According to another embodiment, the invention provides a method of impregnating an implantable drug release device comprising the step of contacting said drug release device with a compound or composition of this invention. Implantable drug release devices include, but are not limited to, biodegradable polymer capsules or bullets, non-degradable, diffusible polymer capsules and biodegradable polymer wafers.
[114] According to another embodiment, the invention provides an implantable medical device coated with a compound or a composition comprising a compound of this invention, such that said compound is therapeutically active.
[115] According to another embodiment, the invention provides an implantable drug release device impregnated with or containing a compound or a composition comprising a compound of this invention, such that said compound is released from said device and is therapeutically active.
[116] Where an organ or tissue is accessible because of removal from the subject, such organ or tissue may be bathed in a medium containing a composition of this invention, a composition of this invention may be painted onto the organ, or a composition of this invention may be applied in any other convenient way.
[117] In another embodiment, a composition of this invention further comprises one or more additional therapeutic agents. The additional therapeutic agent(s) may be selected from
any compound or therapeutic agent known to have or that demonstrates advantageous properties when administered with a compound having the same mechanism of action as bictegravir. Such agents include those indicated as being useful in combination with bictegravir, including but not limited to, lamivudine, zidovudine, lopinavir, ritonavir, abacavir, tenofovir disoproxil fumarate, emtricitabine, efavirenz, rilpivirine, elvitegravir, cobicistat, dolutegravir, atazanavir, darunavir, raltegravir, tenofovir alafenamide, tenofovir alafenamide fumarate, and any combination thereof. Preferably, the additional therapeutic agent is an agent useful in the treatment of Human Immunodeficiency Virus (HIV).
[118] In one embodiment, the additional therapeutic agent is selected from emtricitabine and tenofovir alafenamide. In some embodiments, the additional therapeutic agent is a combination of emtricitabine and tenofovir alafenamide. In some embodiments, the additional therapeutic agent is a combination of 200 mg of emtricitabine and 25 mg of tenofovir alafenamide.
[119] In some embodiments, the pharmaceutical composition comprises a compound of Formula I or a pharmaceutically acceptable salt thereof, one or more additional therapeutic agents, and a pharmaceutically acceptable carrier in a single dosage form. In some embodiments, the single dosage form is a tablet. In another embodiment, the invention provides separate dosage forms of a compound of this invention and one or more of any of the above-described additional therapeutic agents, wherein the compound and additional therapeutic agent(s) are associated with one another. The term“associated with one another” as used herein means that the separate dosage forms are packaged together or otherwise attached to one another such that it is readily apparent that the separate dosage forms are intended to be sold and administered together (within less than 24 hours of one another, consecutively or simultaneously).In the pharmaceutical compositions of the invention, the compound of the present invention is present in an effective amount. As used herein, the term“effective amount” refers to an amount which, when administered in a proper dosing regimen, is sufficient to treat the target disorder.
[120] The interrelationship of dosages for animals and humans (based on milligrams per meter squared of body surface) is described in Freireich et al., Cancer Chemother. Rep, 1966, 50: 219. Body surface area may be approximately determined from height and weight of the subject. See, e.g., Scientific Tables, Geigy Pharmaceuticals, Ardsley, N.Y., 1970, 537.
[121] In one embodiment, an effective amount of a compound of this invention can range from about 25 to 50 mg per day; 15 to 75 mg per day; 10 to 100 mg per day; 5 to 500 mg per day, or 2 to 1000 mg per day. The effective amount can be dosed once or twice a day.
[122] Effective doses will also vary, as recognized by those skilled in the art, depending on the diseases treated, the severity of the disease, the route of administration, the sex, age and general health condition of the subject, excipient usage, the possibility of co-usage with other therapeutic treatments such as use of other agents and the judgment of the treating physician. For example, guidance for selecting an effective dose can be determined by reference to the prescribing information for bictegravir.
[123] For pharmaceutical compositions that comprise one or more additional therapeutic agents, an effective amount of the additional therapeutic agent(s) is between about 20% and 100% of the dosage normally utilized in a monotherapy regime using just that agent.
Preferably, an effective amount is between about 70% and 100% of the normal
monotherapeutic dose. The normal monotherapeutic dosages of these additional therapeutic agents are well known in the art. See, e.g., Wells et al., eds., Pharmacotherapy Handbook, 2nd Edition, Appleton and Lange, Stamford, Conn. (2000); PDR Pharmacopoeia, Tarascon Pocket Pharmacopoeia 2000, Deluxe Edition, Tarascon Publishing, Loma Linda, Calif. (2000), each of which references are incorporated herein by reference in their entirety.
[124] It is expected that some of the additional therapeutic agents referenced above will act synergistically with the compounds of this invention. When this occurs, it will allow the effective dosage of the additional therapeutic agent and/or the compound of this invention to be reduced from that required in a monotherapy. This has the advantage of minimizing toxic side effects of either the additional therapeutic agent of a compound of this invention, synergistic improvements in efficacy, improved ease of administration or use and/or reduced overall expense of compound preparation or formulation. Methods of Treatment
[125] In another embodiment, the invention provides a method of inhibiting human immunodeficiency virus (HIV) integrase activity in a cell, comprising contacting a cell with one or more compounds of Formula I herein, or a pharmaceutically acceptable salt thereof. In some embodiments, the cell is contacted in vitro. In some embodiments, the cell is contacted in vivo. In some embodiments, the cell is contacted ex vivo.
[126] According to another embodiment, the invention provides a method of treating a disease that is beneficially treated by bictegravir in a subject in need thereof, comprising the step of administering to the subject an effective amount of a compound or a composition of this invention. In one embodiment, the subject is a patient in need of such treatment. In certain embodiments, the subject is a human. Such diseases are well known in the art and are
disclosed in, but not limited to the following patents and published applications: human immunodeficiency virus (HIV) U.S. Patent Application No.2016016973, U.S. Patent Application No.2015366872, and U.S. Patent No.9,216,996. In one particular embodiment, the method of this invention is used to treat human immunodeficiency virus (HIV) in a subject in need thereof.
[127] In another embodiment, the invention provides a method of treating human immunodeficiency virus (HIV), the method comprising administering to a subject in need of such treatment an effective amount of a compound or a composition of this invention. In certain embodiments, the HIV is HIV-1. In certain embodiments, the subject is a patient in need of such treatment. In certain embodiments, the subject is a human. In certain embodiments, the subject is a virologically suppressed HIV-1-infected subject. In certain embodiments, the subject is HIV-1 infected, antiretroviral treatment-naive subject.
[128] Identifying a subject in need of such treatment can be in the judgment of a subject or a health care professional and can be subjective (e.g. opinion) or objective (e.g. measurable by a test or diagnostic method).
[129] In another embodiment, any of the above methods of treatment comprises the further step of co-administering to the subject in need thereof an effective amount of one or more additional therapeutic agents. The choice of additional therapeutic agent may be made from any additional therapeutic agent known to be useful for co-administration with bictegravir. The choice of additional therapeutic agent is also dependent upon the particular disease or condition to be treated. Examples of additional therapeutic agents that may be employed in the methods of this invention are those set forth above for use in combination compositions comprising a compound of this invention and an additional therapeutic agent.
[130] In particular, the combination therapies of this invention include co-administering a compound of Formula I and one or more additional therapeutic agents to a subject in need thereof for treatment of human immunodeficiency virus (HIV).
[131] The term“co-administered” as used herein means that the additional therapeutic agent may be administered together with a compound of this invention as part of a single dosage form (such as a composition of this invention comprising a compound of the invention and an additional therapeutic agent as described above) or as separate, multiple dosage forms.
Alternatively, the additional agent may be administered prior to, consecutively with, or following the administration of a compound of this invention. In such combination therapy treatment, both the compounds of this invention and the additional therapeutic agent(s) are administered by conventional methods. The administration of a composition of this
invention, comprising both a compound of the invention and one or more additional therapeutic agents, to a subject does not preclude the separate administration of that same therapeutic agent, any other additional therapeutic agent or any compound of this invention to said subject at another time during a course of treatment.
[132] Effective amounts of these additional therapeutic agents are well known to those skilled in the art and guidance for dosing may be found in patents and published patent applications referenced herein, as well as in Wells et al., eds., Pharmacotherapy Handbook, 2nd Edition, Appleton and Lange, Stamford, Conn. (2000); PDR Pharmacopoeia, Tarascon Pocket Pharmacopoeia 2000, Deluxe Edition, Tarascon Publishing, Loma Linda, Calif.
(2000), and other medical texts. However, it is well within the skilled artisan’s purview to determine the additional therapeutic agent’s optimal effective-amount range.
[133] In one embodiment of the invention, where one or more additional therapeutic agents is administered to a subject, the effective amount of the compound of this invention is less than its effective amount would be where the additional therapeutic agent is not administered. In another embodiment, the effective amount of the additional therapeutic agent is less than its effective amount would be where the compound of this invention is not administered. In this way, undesired side effects associated with high doses of either agent may be minimized. Other potential advantages (including without limitation improved dosing regimens and/or reduced drug cost) will be apparent to those of skill in the art.
[134] In another aspect, the invention provides the use of a compound of Formula I alone or together with one or more of the above-described additional therapeutic agents in the manufacture of a medicament, either as a single composition or as separate dosage forms, for treatment in a subject of a disease, disorder or symptom set forth above. Another aspect of the invention is a compound of Formula I for use in the treatment in a subject of a disease, disorder or symptom thereof delineated herein.
[135] In yet another aspect, the invention provides a compound (e.g., a compound of Formula I or a pharmaceutically acceptable salt thereof) or a pharmaceutical composition disclosed herein alone or in combination with one or more of the above-described additional therapeutic agents for use in treating human immunodeficiency virus (HIV). In one embodiment, the HIV is HIV-1. In one embodiment, the subject is a virologically suppressed HIV-1-infected subject. In another embodiment, the subject is HIV-1 infected, antiretroviral treatment-naive subject. In one embodiment, the compound or the pharmaceutical composition disclosed herein is used in combination with an effective amount of
emtricitabine and tenofovir alafenamide.
Example 1. Evaluation of Metabolic Stability
[136] Microsomal Assay: Human liver microsomes (20 mg/mL) are obtained from
Xenotech, LLC (Lenexa, KS). β-nicotinamide adenine dinucleotide phosphate, reduced form (NADPH), magnesium chloride (MgCl2), and dimethyl sulfoxide (DMSO) are purchased from Sigma-Aldrich.
[137] Determination of Metabolic Stability: 7.5 mM stock solutions of test compounds are prepared in DMSO. The 7.5 mM stock solutions are diluted to 12.5-50 µM in acetonitrile (ACN). The 20 mg/mL human liver microsomes are diluted to 0.625 mg/mL in 0.1 M potassium phosphate buffer, pH 7.4, containing 3 mM MgCl2. The diluted microsomes are added to wells of a 96-well deep-well polypropylene plate in triplicate. A 10 µL aliquot of the 12.5-50 µM test compound is added to the microsomes and the mixture is pre-warmed for 10 minutes. Reactions are initiated by addition of pre-warmed NADPH solution. The final reaction volume is 0.5 mL and contains 0.5 mg/mL human liver microsomes, 0.25-1.0 µM test compound, and 2 mM NADPH in 0.1 M potassium phosphate buffer, pH 7.4, and 3 mM MgCl2. The reaction mixtures are incubated at 37 °C, and 50 µL aliquots are removed at 0, 5, 10, 20, and 30 minutes and added to shallow-well 96-well plates which contain 50 µL of ice- cold ACN with internal standard to stop the reactions. The plates are stored at 4 °C for 20 minutes after which 100 µL of water is added to the wells of the plate before centrifugation to pellet precipitated proteins. Supernatants are transferred to another 96-well plate and analyzed for amounts of parent remaining by LC-MS/MS using an Applied Bio-systems API 4000 mass spectrometer. The same procedure is followed for the non-deuterated counterpart of the compound of Formula I and the positive control, 7-ethoxycoumarin (1 µM). Testing is done in triplicate.
[138] Data analysis: The in vitro t1/2s for test compounds are calculated from the slopes of the linear regression of % parent remaining (ln) vs incubation time relationship.
in vitro t ½ = 0.693/k
k = -[slope of linear regression of % parent remaining (ln) vs incubation time]
[139] Data analysis is performed using Microsoft Excel Software.
[140] Without further description, it is believed that one of ordinary skill in the art can, using the preceding description and the illustrative examples, make and utilize the compounds of the present invention and practice the claimed methods. It should be understood that the foregoing discussion and examples merely present a detailed description
of certain preferred embodiments. It will be apparent to those of ordinary skill in the art that various modifications and equivalents can be made without departing from the spirit and scope of the invention. The relevant teachings of all patents, published applications and references cited herein are incorporated by reference in their entirety.
Claims
We claim:
1. A compound of Formula I:
or a pharmaceutically acceptable salt thereof, wherein:
each of Y1, Y2, Y3, Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, Y8, Y9, Y10a, Y10b, Y11a, and Y11b is independently hydrogen or deuterium; provided that if each Y1, Y2, Y3, Y4a, Y4b, Y5a, Y5b, Y6, Y7a, Y7b, Y8, Y9, Y10a, Y10b, and Y11a is hydrogen, then Y11b is deuterium. 2. The compound of claim 1, wherein Y1, Y2, and Y3 are the same. 3. The compound of claim 2, wherein Y1, Y2, and Y3 are hydrogen. 4. The compound of claim 2, wherein Y1, Y2, and Y3 are deuterium. 5. The compound of claim 1, wherein the structure is of Formula 1A:
pharmaceutically acceptable salt thereof. 6. The compound of any one of claims 1 to 5, wherein Y4a, Y4b, Y5a, and Y5b are hydrogen. 7. The compound of any one of claims 1 to 5, wherein Y4a, Y4b, Y5a, and Y5b are deuterium. 8. The compound of any one of claims 1 to 5, wherein Y4a is hydrogen, Y4b is hydrogen, Y5a is deuterium, and Y5b is deuterium.
9. The compound of any one of claims 1 to 5, wherein Y a is deuterium, Y is deuterium, Y5a is hydrogen, and Y5b is hydrogen.
10. The compound of any one of claims 1 to 9, wherein Y6 is hydrogen.
1 1. The compound of any one of claims 1 to 9, wherein Y6 is deuterium.
12. The compound of any one of claims 1 to 11, wherein Y7a and Y713 are hydrogen.
13. The compound of any one of claims 1 to 11, wherein Y a and Y are deuterium.
The compound of any one of claims 1 to 13, wherein Y8 is deuterium.
15. The compound of any one of claims 1 to 13, wherein Y is hydrogen
16. The compound of any one of claims 1 to 15, wherein Y9 is hydrogen
The compound of any one of claims 1 to 15, wherein Y is deuterium.
The compound of any one of claims 1 to 17, wherein Y a and
are hydrogen. The compound of any one of claims 1 to 17, wherein Y10a and Y10b are deuterium.
The compound of any one of claims 1 to 19, wherein Y11a and Y11b are hyd:
21. The compound of any one of claims 1 to 19, wherein Y11a and Y11b are deuterium.
22. The compound of any one of claims 1 to 21, wherein any atom not designated as deuterium is present at its natural isotopic abundance.
23. The compound of claim 1, wherein Y , Y , and Y are hydrogen, and the compound is selected from any one of the compounds set forth in the table below:
or a pharmaceutically acceptable salt thereof, wherein any atom not designated as deuterium is present at its natural isotopic abundance.
24. The compound of claim 1, wherein Y 1 , Y2 , and Y 3 are deuterium, and the compound is selected from any one of the compounds set forth in the table below:
or a pharmaceutically acceptable salt thereof, wherein any atom not specifically designated as deuterium is present at its natural isotopic abundance.
25. A pharmaceutical composition, comprising a compound of any of claims 1 to 24, or a pharmaceutically acceptable salt thereof; and a pharmaceutically acceptable carrier.
26. A method of inhibiting human immunodeficiency virus (HIV) integrase activity in a cell, comprising contacting the cell with a compound of any one of claims 1 to 24, or a pharmaceutically acceptable salt thereof.
27. A method of treating human immunodeficiency virus (HIV), the method comprising administering to a subject in need of such treatment an effective amount of a compound of any one of claims 1 to 24, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition of claim 25. 28. The method of claim 27, wherein the HIV is HIV-1. 29. The method of claim 27 or 28, wherein the subject is a virologically suppressed HIV- 1-infected subject. 30. The method of claim 27 or 28, wherein the subject is HIV-1 infected, antiretroviral treatment-naive subject. 31. The method of any one of claims 27-30, further comprising the step of administering an effective amount of an additional therapeutic agent selected from the group consisting of lamivudine, zidovudine, lopinavir, ritonavir, abacavir, tenofovir disoproxil fumarate, emtricitabine, efavirenz, rilpivirine, elvitegravir, cobicistat, dolutegravir, atazanavir, darunavir, raltegravir, tenofovir alafenamide, tenofovir alafenamide fumarate, and any combination thereof. 32. The method of any one of claims 27-30, further comprising the step of administering an effective amount of emtricitabine and tenofovir alafenamide.
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| US201662355105P | 2016-06-27 | 2016-06-27 | |
| US62/355,105 | 2016-06-27 |
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| PCT/US2017/039207 Ceased WO2018005328A1 (en) | 2016-06-27 | 2017-06-26 | Deuterated bictegravir |
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| WO2020042841A1 (en) * | 2018-08-28 | 2020-03-05 | 重庆博腾制药科技股份有限公司 | Preparation method for (1r,3s)-3-amino-1-cyclopentanol and salts thereof |
| EP3653629A1 (en) * | 2018-11-16 | 2020-05-20 | Sandoz AG | Acid addition salts of an integrase strand transfer inhibitor |
| WO2021195403A1 (en) | 2020-03-26 | 2021-09-30 | Cyclerion Therapeutics, Inc. | Deuterated sgc stimulators |
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| US20150291618A1 (en) * | 2011-05-03 | 2015-10-15 | Concert Pharmaceuticals Inc. | Carbamoylpyridone derivatives |
| US20140221356A1 (en) * | 2012-12-21 | 2014-08-07 | Gilead Sciences, Inc. | Polycyclic-carbamoylpyridone compounds and their pharmaceutical use |
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| WO2020042841A1 (en) * | 2018-08-28 | 2020-03-05 | 重庆博腾制药科技股份有限公司 | Preparation method for (1r,3s)-3-amino-1-cyclopentanol and salts thereof |
| JP2021532184A (en) * | 2018-08-28 | 2021-11-25 | 重慶博騰制薬科技股▲ふん▼有限公司 | (1R, 3S) Method for preparing -3-amino-1-cyclopentanol and its salt |
| JP7174851B2 (en) | 2018-08-28 | 2022-11-17 | 重慶博騰制薬科技股▲ふん▼有限公司 | Method for preparing (1R,3S)-3-amino-1-cyclopentanol and salts thereof |
| EP3653629A1 (en) * | 2018-11-16 | 2020-05-20 | Sandoz AG | Acid addition salts of an integrase strand transfer inhibitor |
| CN110229174A (en) * | 2019-05-22 | 2019-09-13 | 博诺康源(北京)药业科技有限公司 | The synthetic method of Bictegravir bulk pharmaceutical chemicals genotoxicity impurity |
| WO2021195403A1 (en) | 2020-03-26 | 2021-09-30 | Cyclerion Therapeutics, Inc. | Deuterated sgc stimulators |
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