WO2012149906A1 - Modified nucleic acid structure having anti-hiv-1 fusion activity - Google Patents
Modified nucleic acid structure having anti-hiv-1 fusion activity Download PDFInfo
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- WO2012149906A1 WO2012149906A1 PCT/CN2012/075063 CN2012075063W WO2012149906A1 WO 2012149906 A1 WO2012149906 A1 WO 2012149906A1 CN 2012075063 W CN2012075063 W CN 2012075063W WO 2012149906 A1 WO2012149906 A1 WO 2012149906A1
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- 0 C**(C)(C)OC[C@](C(C1)*(*)C(C)=PC*)O[C@]1N(C=C(**)C(N1)=O)C1=O Chemical compound C**(C)(C)OC[C@](C(C1)*(*)C(C)=PC*)O[C@]1N(C=C(**)C(N1)=O)C1=O 0.000 description 5
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
- C07H21/04—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with deoxyribosyl as saccharide radical
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/12—Antivirals
- A61P31/14—Antivirals for RNA viruses
- A61P31/18—Antivirals for RNA viruses for HIV
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
- C12N15/1131—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing against viruses
- C12N15/1132—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing against viruses against retroviridae, e.g. HIV
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/10—Type of nucleic acid
- C12N2310/18—Type of nucleic acid acting by a non-sequence specific mechanism
Definitions
- the present invention relates to a modified nucleic acid structure, or a pharmaceutically acceptable salt or solvate thereof, a double helix, a triple helix and a four helix high-order structure of the nucleic acid structure, a process for the preparation thereof, and use thereof for preparing an antiviral drug .
- Background of the invention a modified nucleic acid structure, or a pharmaceutically acceptable salt or solvate thereof, a double helix, a triple helix and a four helix high-order structure of the nucleic acid structure, a process for the preparation thereof, and use thereof for preparing an antiviral drug .
- nucleic acid drugs for anti-tumor, anti-viral and cardiovascular disease treatments has been a hot topic in recent years, including antisense nucleic acids, ribozymes, small interfering RM (s iRNA) and adaptors.
- the first three are gene therapy drugs designed for the expression of disease-causing genes or regulatory related sequences, while the aptamer-type nucleic acids specifically bind to specific target proteins with their unique high-level structures to achieve the function of inhibiting target proteins. purpose.
- RNA or high-stranded structures of DNA single strands may be involved in many life processes of cells, playing various known and Unknown feature.
- the four-helix structure formed by the G-rich fragment has important biological significance.
- the well-known telomere structure contains a highly repetitive G-rich sequence, (GGGTTA) n, which is closely related to cell life.
- G-rich fragments such as the c-myc promoter, immunoglobulin transformation region, insulin regulatory sequences, etc., have also been found in other gene sequences, and are involved in the regulation of multiple functions. It is known that there are 375,000 potential G-tetra-helix structures in cells, and the specific life processes involved in them have yet to be further studied.
- the G-tetra-helical structure is a very unique class of high-order structures formed by four stretches of nucleotide fragments containing contiguous G, which can be derived from within or between chains.
- the four bases G on the four fragments (chains) can form a quadruplex plane by hydrogen bonding, and such planes are continuously stacked to form a four-helix structure, and cations such as Na+ and yttrium are used for this.
- the structure provides further stability and they create electrostatic interactions with the renegade of the guanine.
- the overall conformation of the four helix is in a variety of forms, depending on factors such as the type of cation, the length of the attached ring, the terminal group (introduced or the base itself).
- the four-helical structure Under the condition of physiological salt concentration, the four-helical structure has a melting temperature above 60 and can exist stably under physiological conditions. This may also be the structural basis for biological evolution to select its biological function.
- the biologically functional non-biological G-tetra-helical structure was originally selected from a library of nucleic acid sequences and functions by specifically binding to a specific protein, such as an aptamer that specifically binds to thrombin. It has also been found by combinatorial chemistry that a plurality of G-tetra-helix-containing structures have an activity of inhibiting HIV-1. 0jwang et al. reported a 17-mer G-tetra-helical structure with activity to inhibit HIV-1 integrase. Wyatt et al.
- the present invention is based on the structural requirements of the action of the nucleic acid four-helix anti-HIV-1, that is, the polyanion of the nucleic acid backbone and the fat-soluble group of a certain volume of the nucleic acid structure end, propose a new modification strategy, through chemical modification and a new skeleton design. Looking for activity A new structure that is higher and more suitable as a drug, as one of the effective ways to screen anti-HIV-1 drugs.
- the present invention relates to a modified nucleic acid structure having anti-HIV-1 fusion activity, the sequence of which is as shown in the general formula (I):
- R 1 is attached at the 5'-end of the nucleotide sequence, independently selected from the nucleoside monomer structure of Formula 1-6, which is 3'-hydroxy or 5'-hydroxy with the nucleoside Acid sequence linkage;
- R 2 is attached at the y-terminus of the nucleotide sequence, independently selected from the group consisting of: hydrogen atom, methylphosphoryl group, 2-chlorophenylphosphoryl group, methylthiophosphoryl group, methylphosphono group, methylthio group Phosphono, phenylphosphono, 2-hydroxyethylphosphoryl, 2-hydroxyethylthiophosphoryl, phenylphosphoryl, 4-chlorophenylphosphoryl, 2-hydroxy-3-acetamido-propyl base;
- R 3 is absent or is selected from hydrogen, C 1-4 alkyl, C 1-4 alkoxy, halogen atom, C 1-4 alkyl substituted by amino or C 1-4 alkoxy or halogen atom, substituted or not Substituted aryl and substituted or unsubstituted aralkyl;
- X is selected from the group consisting of an oxygen atom, a sulfur atom, an NH 2 , NH and a C1-6 alkylene chain; wherein when X is NH 2 , R 3 is absent;
- R 4 is absent or is selected from a hydrogen atom, a C1-6 alkyl group, a C1-6 alkoxy group, a C1-6 alkylamino group, a halogen atom, and a C1-substituted by an amino group or a C1-6 alkoxy group or a halogen atom.
- Y is selected from the group consisting of an oxygen atom, a sulfur atom, NH 2 , NH, a hydrogen atom, a fluorine atom and a C1-6 alkylene group, wherein when Y is H, NH 2 or F, R 3 is absent;
- 13 ⁇ 4 and m 2 represent the number of structural units containing bases B 4 and B 1 -B 2 -B 3 - B 5 , each independently being 1-15;
- B 1 , B 2 , B 3 , B 4 and B 5 are bases on a nucleotide sequence, each independently selected from the group consisting of A, G, C, T, mC, mG and unnatural bases, and combinations thereof;
- X 1 is absent or is selected from a C1-6 alkylene group, a C2- 6 alkenylene group and a C2- 6 alkynylene group, wherein the C1-6 alkylene group, the C2- 6 alkenylene group and the C2- 6 group One or more methylene groups in the alkynylene group are optionally replaced by an oxygen atom, a sulfur atom, an amide group or an ester group;
- X 2 is absent or is selected from an oxygen atom, CH 2 , NH and a sulfur atom;
- X 3 is selected from the group consisting of CH and a nitrogen atom
- Z is selected from a carbon atom or a silicon atom
- R 5 , R 6 and R 7 are the same or different and are each independently selected from C1-4 alkyl, fluorenyl, xanthenyl, unsubstituted or C6-20 aryl which is mono- or polysubstituted by R 8 , and Replace Or a thiol group which is mono- or polysubstituted by R 8 ;
- R 8 is C1-4 alkyl, C1-4 haloalkyl, halogen atom, nitro, cyano, amino, C1-4 alkoxy, C1-4 alkylthio, substituted or unsubstituted aryl, aryloxy Alkyloxy group;
- R 5 , R 6 , R 7 and Z are bonded to S'-O or X 2
- the groups R Z_ are the same or different and may exist simultaneously or separately, at this time When the nucleoside monomer 1-3 has no group at the 5' position
- nucleoside monomers 1-3 are linked to the nucleotide sequence by a 5'-hydroxyl group.
- the present invention is based on the structural requirements of the four-helix structure fragment for inhibiting the entry activity of HIV-1, and proposes a novel terminal modification pathway for the four-helix structure.
- the present invention firstly proposes and demonstrates that the modified double helix and triple helix nucleic acid structures also have better activity for inhibiting HIV entry.
- the present invention relates to the introduction of various fat-soluble groups at a plurality of positions of terminal structural units; and the introduction of such modifications into nucleic acid sequences to form stable high-order structures under simulated physiological conditions, such as double helices, triple helices, and four
- the helical structure which exhibits activity against HIV-1 entry, has potential research and development value as an anti-HIV-1 entry drug candidate.
- novel structural nucleic acids involved in the present invention have significant structural differences from existing marketed small molecule or peptide anti-HIV drugs, and the new structure is advantageous for overcoming the resistance of existing anti-HIV drugs.
- the present invention provides a method of designing and synthesizing a modified monomer comprising introducing various fat-soluble groups into the base of the nucleoside monomer and ribose, and converting into a phosphoramidite monomer suitable for solid phase synthesis of the nucleic acid.
- the present invention relates to a process for the preparation and purification of nucleic acid structural fragments containing modified monomers.
- the invention also relates to the assembly of various modifications on the high-level structure of nucleic acids, including
- the sequence composition produced by B 1 , B 2 , B 3 , B 4 , B 5 contains one or more GGG or GGGG fragments, and a four-helix structure is formed;
- a purine or a perpyrimidine forms a triple helix structure; if it is a random combination of natural bases, a double helix structure is formed.
- the complementary nucleic acid sequence in the triple helix and the double helix structure may be natural or may be a modified sequence as defined in the present invention.
- Non-natural bases include structures resulting from the modification of four bases such as A, G, C, T, etc., to improve the thermal stability, chemical stability and enzyme stability of the helical structure: for A and G Modification of the five-membered ring moiety, such as the base moiety in Formulas 2 and 3; introduction of a substituent at the 5-position of T, such as the base moiety of Formula 1, etc.; substituents may also include chlorine, bromine, iodine, etc. Halogen atom;
- nucleoside monomers 1-6 When nucleoside monomers 1-6 are used for nucleic acid structure modification, they are used in the synthesis of nucleic acid structures in the form of phosphoramidite monomers, which are used for solid phase synthesis of phosphorous amide monomer 7-12, respectively. ) , As follows. Accordingly, the present invention also provides phosphoramidite monomer structures 7-12 and methods for their synthesis.
- X 1 , X 2 , X 3 , Z, R 5 , R 6 , R 7 have the same meanings as in the formula (I);
- R 9 is a protecting group for the 6-position amino group of adenine and its analogs, including benzoyl, di-n-butylaminomethyl, dimethylaminomethyl, acetyl, propionyl, butyryl, formyl, Among them, a benzoyl group, a di-n-butylaminomethyl group, a dimethylaminomethyl group, an acetyl group;
- R 1 " is a 2-amino protecting group for guanine and its analogs, including isobutyryl, di-n-butylaminomethyl, dimethylaminomethyl, acetyl, propionyl, butanoyl, benzoyl , formyl, wherein, isobutyryl, di-n-butylaminomethyl, dimethylaminomethyl, acetyl is preferred.
- the present invention also relates to a nucleic acid structure represented by the formula (I), a pharmaceutically acceptable salt thereof, or a solvate thereof.
- the present invention relates to the nucleic acid structure represented by the formula (I), using other nucleic acid drugs (such as Transport strategy for s iRNA, antisense nucleic acids, aptamers, ribozymes, etc.: complexes formed with various cationic polymers such as cationic liposomes; ligands with PEG, cholesterol, target cell surface receptors, etc. Binding to improve the transport efficiency of such nucleic acid drugs.
- nucleic acid drugs such as Transport strategy for s iRNA, antisense nucleic acids, aptamers, ribozymes, etc.: complexes formed with various cationic polymers such as cationic liposomes; ligands with PEG, cholesterol, target cell surface receptors, etc. Binding to improve the transport efficiency of such nucleic acid drugs.
- the invention further relates to a pharmaceutical composition
- a pharmaceutical composition comprising a nucleic acid structure of formula (I), or a pharmaceutically acceptable salt or solvate thereof, and a pharmaceutically acceptable carrier or excipient.
- the composition further includes other drugs that treat viral infections.
- the virus is in particular an HIV-1 virus.
- the invention further relates to the use of a nucleic acid structure of the formula (I) or a pharmaceutically acceptable salt or solvate thereof for the manufacture of a medicament for the treatment of a viral infection.
- the virus is an HIV-1 virus.
- the invention further relates to a method of treating a viral infection, the method comprising administering to a patient in need of such treatment a therapeutically effective amount of a nucleic acid structure of formula (I) or a pharmaceutically acceptable salt or solvate thereof.
- the virus is an HIV-1 virus.
- Figure 1 contains a CD spectrum of a four-helix nucleic acid structure of the general formula (I), which is a circular dichroic transmission map for determining the high-order structure of the nucleic acid of the general formula (I) of the present invention, wherein 01 to 07 respectively refer to LK- in Table 2; CW-01 to LK-CW-07. LK-CW-01 to LK-CW-07 both show the characteristic CD spectrum of the parallel four-helical structure.
- Figure 2 contains a CD spectrum of the double-stranded nucleic acid structure D01+D02 of the general formula (I), which is a circular dichroism chromatogram for determining the high-order structure of the nucleic acid of the general formula (I) of the present invention, wherein the structure D01+D02 shows a double helix structure Characteristic CD peak.
- the present invention utilizes nucleoside monomers 1-6 to structurally modify the nucleic acid sequence of formula (I) to obtain biological activity against viruses, particularly anti-HIV-1 viruses.
- a first aspect of the invention relates to an oligonucleotide of the formula (I) or a pharmaceutically acceptable agent thereof
- R 1 is attached at the 5'-end of the nucleotide sequence, independently selected from the nucleoside monomer structure of Formula 1-6, which is 3'-hydroxy or 5'-hydroxy with the nucleoside Acid sequence linkage;
- R 2 is attached at the y-terminus of the nucleotide sequence, independently selected from the group consisting of: hydrogen atom, methylphosphoryl group, 2-chlorophenylphosphoryl group, methylthiophosphoryl group, methylphosphono group, methylthio group Phosphono, phenylphosphono, 2-hydroxyethylphosphoryl, 2-hydroxyethylthiophosphoryl, phenylphosphoryl, 4-chlorophenylphosphoryl and 2-hydroxy-3-acetamido-propyl Preferred; a hydrogen atom, a methylphosphoryl group, a 2-chlorophenylphosphoryl group, a methylthiophosphoryl group, a 2-hydroxyethylphosphoryl group or a 2-hydroxy-3-acetamido-propyl group;
- R 3 is absent or is selected from hydrogen, C 1-4 alkyl, C 1-4 alkoxy, halogen atom, C 1-4 alkyl substituted by amino or C 1-4 alkoxy or halogen atom, preferably A Base, ethyl, 2-aminoethyl, 2-methoxyethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl or tert-butyl, more preferably methyl, ethyl, 2-aminomethyl, 2-methoxyethyl or propyl; or R 3 is a substituted or unsubstituted aryl group, wherein aryl means 6-20 carbon atoms, preferably 6-16 carbon atoms, More preferably, an aromatic ring structure of 6 to 10 carbon atoms, the aryl group having no substituent or having at least one substituent; including a phenyl group, a C1-4 alkylphenyl group (e.g., 2-methylphen
- R 4 is absent or is selected from a hydrogen atom, a C1-6 alkyl group, a C1-6 alkoxy group, a C1-6 alkylamino group, a halogen atom, and a C1-substituted by an amino group or a C1-6 alkoxy group or a halogen atom.
- 6 alkyl preferably methyl, ethyl, 2-aminoethyl, methoxymethylene, 2-methoxyethylidene, 3-methoxypropylene, 2-ethoxymethylene , 2-ethoxyethylene, 2-propoxyethylene, propyl, isopropyl, butyl, isobutyl, sec-butyl or tert-butyl, more preferably methyl, ethyl, 2-aminoethyl, 2-methoxyethyl, methoxymethylene, 2-ethoxymethylene or propyl; or R 4 is a substituted or unsubstituted aryl group, wherein aryl means An aromatic ring structure having 6 to 20 carbon atoms, preferably 6 to 16 carbon atoms, more preferably 6 to 10 carbon atoms, the aryl group having no substituent or having at least one substituent including a phenyl group, a C1-4 alkane Phenylphenyl (such as 2-methyl
- Y is selected from the group consisting of an oxygen atom, a sulfur atom, NH 2 , NH, a hydrogen atom, a fluorine atom and a C1-6
- An alkylene group such as a methylene group, an ethylene group, a propylene group, a tetramethylene group, or a pentamethylene group; wherein when Y is H, NH 2 or F, R 3 is absent; a methylene group is preferred.
- a hydrogen atom or a fluorine atom
- 13 ⁇ 4 and m 2 represent the number of structural units containing the bases B 4 and B 1 -B 2 -B 3 - B 5 , each independently being 1-15, ii preferably 1-10, more preferably 1-6, most Preferably 1-4, even most preferably 1 or 2; m 2 is preferably 1-10.
- B 1 , B 2 , B 3 , B 4 and B 5 are bases on a nucleotide sequence, each independently selected from the group consisting of A, G, C, T, mC, mG and unnatural bases, and combinations thereof;
- X 1 is absent or is selected from a C1-6 alkylene group such as a methylene group, an ethylene group, a propylene group, a butylene group, a pentylene group, wherein a methylene group, an ethylene group, a propylene group is preferred.
- C2-6 alkenylene group such as (E)-vinyl group, (Z)-vinyl group, (E)-propenyl group, (Z)-propenyl group, (E)-butenyl group, (Z) butene (E)-pentenyl, (Z)-pentenyl, (E)-hexenyl, (Z)-hexenyl, wherein (E)-propenyl, (Z)-propenyl And a C2-6 alkynylene group, such as propynyl, butynyl, pentynyl, hexynyl, wherein a propynyl or butynyl group is preferred; wherein the C1-6 alkylene group, C2-4 One or more methylene groups in the alkenyl group and the C 2 - 6 alkynylene group are optionally replaced by an oxygen atom, a sulfur atom, an amide group or an ester group;
- X 2 is absent or is selected from an oxygen atom, CH 2 , NH and a sulfur atom;
- X 1 and X 2 may together form a methyleneoxy group, an ethyleneoxy group, a propyleneoxy group, a 1-propynyloxy group, a 3-propyleneoxy group or a 1-propenyloxy group;
- X 3 is selected from the group consisting of CH and a nitrogen atom
- Z is selected from a carbon atom or a silicon atom
- R 5 , R 6 and R 7 are the same or different and are each independently selected from C 1-4 alkyl, such as methyl, ethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl, tert-butyl a group, wherein a tert-butyl group is preferred; and a C6-20 aryl group which is unsubstituted or monosubstituted or polysubstituted by R 8 , preferably a C 6-16 aryl group, further preferably a C 6-10 aryl group; the aryl group has no substituent or There are at least one substituent; an unsubstituted aryl group such as phenyl, 1-naphthyl, 2-naphthyl, 4-phenanthryl, 9-fluorenyl, 2-indenyl, fluorenyl, wherein the preferred aryl group is a phenyl group and a naphth
- R 8 is as defined below: C1-4 alkyl, C1-4 haloalkyl, halogen atom, nitro, aryl, amino, C1-4 alkoxy, C1-4 alkylthio, aryl, aryloxy, aryl An alkyl group or an aralkyloxy group; wherein the aryl group means an aromatic ring structure having 6 to 20 carbon atoms; the aralkyl group is an alkyl group having 1 to 4 carbon atoms, which is substituted with at least one of the above aryl groups; Aryloxy means aryl-0-, wherein aryl is as defined above; aralkyloxy means aralkyl-0-, wherein aralkyl is as defined above;
- R 8 An example of the definition of R 8 is as follows:
- C1-4 alkyl such as methyl, ethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl, and tert-butyl, preferably methyl and tert-butyl;
- C1-4 haloalkyl fluoromethyl, trifluoromethyl, trichloromethyl, 2, 2, 2-trifluoroethyl, 2, 2, 2-trichloroethyl, 2-fluoroethyl, 2 -chloroethyl, 2-iodoethyl, 3-chloropropyl, 4-fluorobutyl, etc., preferably trifluoromethyl and 2, 2, 2-trichloroethyl;
- Halogen atom such as fluorine, chlorine, bromine, iodine atom, preferably fluorine and chlorine atom; nitro group, cyano group and amino group;
- C1-4 alkoxy such as methoxy, ethoxy, propoxy, isopropoxy, butoxy, isobutoxy, sec-butoxy, and tert-butoxy, preferably methoxy and Tert-butoxy;
- C1-4 alkylthio methylthio, ethylthio, propylthio, isopropylthio, butylthio, isobutylthio, sec-butylthio, and tert-butylthio, preferably methylthio and tert-butyl Butylthio; aryl: such as phenyl or naphthyl;
- Aryloxy such as phenoxy or naphthyloxy
- Aralkyl group such as benzyl or phenethyl
- Aralkyloxy such as benzyloxy or phenethyloxy
- R 5 , R 6 and R 7 are the same or different and are each independently selected from the group consisting of fluorenyl, unsubstituted or substituted, and the substituent is the same as R 8 ; the number of substituents is 1-5, preferably 1-3 Further, preferably one; such as 9, 10- ⁇ - 1-, 9, 10- ⁇ - 2-, 4-methyl- 9, 10- ⁇ - 1-, 5-methoxy- 9, 10- ⁇ - 1- , 7-chloro- 9, 10- ⁇ -1-, 8-fluoro- 9, 10- ⁇ - 2- , 6-ethyl- 9, 10- ⁇ - 2-, 8-ethoxy-, 9, 10- ⁇ - 2-, 9, 10- ⁇ - 1-, 6-hydroxy- 9, 10- ⁇ - 1-, wherein, preferably, unsubstituted anthracene ⁇ ;
- R 5 , R 6 and R 7 and Z are selected from the group consisting of fluorenyl, P ton, preferably 9-fluorenyl, 9-fluorene;
- R 5 , R 6 , R 7 and Z are bonded to S'-O or X 2
- the groups R Z_ are the same or different and may exist simultaneously or separately, at this time When the nucleoside monomer 1-3 has no group at the 5' position
- nucleoside monomers 1-3 are linked to the nucleotide sequence by a 5'-hydroxyl group.
- the sequence composition produced by B 1 , B 2 , B 3 , B 4 , B 5 contains one or more GGG or GGGG fragments, forming a four-helix structure; A composition consisting of a full purine or a perpyrimidine forms a triple helix structure; if it is a random combination of natural bases, a double helix structure is formed.
- the complementary nucleic acid sequence in the triple helix and the double helix structure may be unmodified or may be a modified sequence as defined in the present invention.
- Non-natural bases include structures resulting from the modification of four bases such as A, G, C, T, etc., to improve the thermal stability, chemical stability and enzyme stability of the helical structure: Modification of the five-membered ring moiety, such as the base moiety in Formulas 2 and 3; introduction of a substituent at the 5-position of T, such as the base moiety of Formula 1, etc.; The substituent on the modified base may further include a halogen atom such as chlorine, bromine or iodine; in the formula (I), B 1 , B 2 , B 3 , B 4 and B 5 contain three consecutive G groups, such as d (TGGGAG) 4 , d (GGGTG) " d (TGGGA) 4 , d (TGGGA) 4 , d (TGGGA) 4 , d (TGGGA ) 4 , d (TGGGA ) 4 , d (TGGGA ) 4 , d (TGGGA ) 4 , d (T
- a stable four-helical structure is formed in the presence of ions; when B 1 to B 5 are randomly distributed base compositions, such as d (TCTGCATG) and d (CATGCAGA), a double helix structure is formed; in these two types of structures
- the modification strategy of the present invention is introduced, and the 5'-end is substituted with the modified monomer 1-6 to obtain an activity for inhibiting the entry of HIV-1.
- ! ⁇ and m 2 is independently 1-10, preferably 1-6, more preferably 1-4. ii preferably 1-4, m 2 preferably 1 to 10.
- R 1 is attached at the 5'-terminus, independently selected from the monomer structure 1-6;
- R 2 is attached at the 3'-position, independently selected from: a hydrogen atom , methylphosphoryl, 2-chlorophenylphosphoryl, methylthiophosphoryl, 2-hydroxyethylphosphoryl and 2-hydroxy-3-acetamido-propyl.
- X 1 is C1-6 alkylene, C1-6 alkenylene or C1-6 alkynylene, wherein one of said C1-6 alkylene groups Or a plurality of methylene groups are optionally replaced by oxygen atoms;
- X 2 is an oxygen atom, CH 2 , NH or a sulfur atom;
- X 1 and X 2 together form a methyleneoxy group, an ethyleneoxy group, a propyleneoxy group , i- 1-propynyloxy, or i- 1-propenyloxy;
- X 3 is CH or a nitrogen atom.
- X and R 3 together form a 0H, SH, methoxy, ethoxy, propoxy or benzyloxy group.
- Y is and R 4 - together form a hydroxyl group, a fluorine atom, a hydrogen atom, a methoxy group, ethoxy, propoxy, methoxymethylene, methoxy, methyl Oxyethyleneoxy, ethoxymethyleneoxy, methylamino or ethylamino.
- a second aspect of the invention relates to a phosphoramidite monomer 7-12 for the synthesis of formula (I) derived from monomers 1-6 and a process for its synthesis.
- R 9 is a protecting group for the 6-position amino group of adenine and its analogs, including benzoyl, di-n-butylaminomethyl, dimethylaminomethyl, acetyl, propionyl, butyryl, formyl, Among them, a benzoyl group, a di-n-butylaminomethyl group, a dimethylaminomethyl group, an acetyl group;
- R 1 " is a 2-amino protecting group for guanine and its analogs, including isobutyryl, di-n-butylaminomethyl, dimethylaminomethyl, acetyl, propionyl, butanoyl, benzoyl , formyl, wherein, isobutyryl, di-n-butylaminomethyl, dimethylaminomethyl, formyl, acetyl is preferred.
- a third aspect of the invention relates to the synthesis of nucleoside monomers 1-6, exemplified by a structure in which the 2'-position is substituted with a hydrogen atom.
- the hydroxyl group at the 5 and 5' positions of the compound la is reacted with a halide containing an aromatic group such as trityl chloride (Trt-Cl), 4,4'-dimethoxy-trityl chloride ( DMT-C1), tert-butyldiphenylchlorosilane (TBDPS-C1), which gives the important intermediate 1, 1 at the 5 and 5'-positions of the R 5 R 6 R 7 Z group; if R 5 R 6 R 7 Z group is different at the 5 and 5' positions, and the compound lb is used as a raw material, and the R 5 R 6 R 7 Z group has been introduced at the 5 position thereof, and the glycosidation reaction and the sugar ring are removed.
- a halide containing an aromatic group such as trityl chloride (Trt-Cl), 4,4'-dimethoxy-trityl chloride ( DMT-C1), tert-butyldiphenylch
- the protecting group (Tol, p-methylbenzoyl) gives the important intermediate lc, which introduces the desired R 5 R 6 R 7 Z group at its 5'-position, giving the 5 and 5'-positions with different lipids.
- the nucleoside monomer 1 is further converted to a phosphoramidite monomer 7 for DNA solid phase synthesis.
- Reaction Scheme 4 Synthesis route of compound 1 and its phosphoramidite monomer 7
- X 1 is another group
- X 2 is oxygen or a carbon atom
- a coupling reaction to introduce an olefinic bond or a block bond to the arm and the two link arms can be hydrogenated to an alkylene linker, and then the desired group is introduced at the 5'-position, as in Scheme 5.
- Scheme 9 Synthesis route of compound 5 and its phosphoramidite monomer 11
- the synthesis of compound 6 is shown in Reaction Scheme 10, starting with deoxyguanosine and introducing R 5 R 6 R 7 at its 5'-position. Obtained from the Z group, followed by protecting its 2-amino group to give the key intermediate 6a, or, first, protecting the 2-amino group of deoxyguanosine to give the intermediate 6b, and introducing the R 5 R 6 R 7 Z at the 5'-position.
- the group, the key intermediates 6a, 6a are further converted to the phosphoramidite monomer 12.
- a fourth aspect of the invention relates to the synthesis, utilization of a nucleic acid sequence comprising monomers 1-6
- nucleoside monomers were introduced into the 5'-end or other positions of the nucleotide sequence, the partial sequence is shown in Table 1, and the nucleoside monomer structure contained is as follows .
- a fifth aspect of the invention relates to the spectral analysis of the high-order structure of the modified nucleic acid, the respective modified nucleic acid sequences are dissolved in a buffer, and their characteristic peak shapes are determined by a circular dichroism, and the four-helix and double-helix structures are determined. form.
- a sixth aspect of the invention relates to the activity of modifying the anti-HIV-1 fusion of a nucleic acid, and detecting the inhibitory activity using a cell fusion model.
- a seventh aspect of the invention relates to a compound of formula (I), a transport strategy using other nucleic acid drugs (such as s iRM, antisense nucleic acid, aptamer, ribozyme, etc.): with various cationic polymers such as cationic lipids A complex formed by plastids; combined with PEG, cholesterol, ligands of target cell surface receptors, etc., to improve the transport efficiency of such nucleic acid drugs.
- nucleic acid drugs such as s iRM, antisense nucleic acid, aptamer, ribozyme, etc.
- An eighth aspect of the invention relates to a pharmaceutical composition
- a pharmaceutical composition comprising a nucleic acid of the formula (I) or a pharmaceutically acceptable salt or solvate thereof, and a pharmaceutically acceptable carrier or excipient.
- the composition further includes other A drug that treats viral infections.
- the virus is in particular an HIV-1 virus.
- the nucleic acid structure of the present invention can be used either in itself or in the form of a pharmaceutically acceptable salt thereof.
- the pharmaceutically acceptable salt of the nucleic acid structure of the formula (I) includes a conventional salt formed with a pharmaceutically acceptable inorganic or organic base.
- suitable base addition salts include sodium, lithium, potassium, magnesium, aluminum, calcium, zinc, trimethylamine, triethylamine, tripropylamine, tributylamine, hydrazine, ⁇ '-dibenzylethylenediamine, a salt formed from chloroprocaine, choline, diethanolamine, ethylenediamine, guanidine-methylglucamine, and procaine.
- the nucleic acid structure of the formula (I) and pharmaceutically acceptable salts thereof are included.
- the nucleic acid structure of the formula (I) may also form a solvate such as a hydrate, an alcohol or the like.
- solvated forms with pharmaceutically acceptable solvents such as water, ethanol and the like are equivalent to the unsolvated forms.
- the pharmaceutically acceptable carrier or excipient as used herein includes any and all solvents, diluents or other liquid vehicles, dispersing or suspending aids, surfactants, isotonic agents, and the like, which are suitable as the particular dosage form desired. Thickeners or emulsifiers, solid binders, lubricants, etc.
- Various carriers or excipients for formulating pharmaceutically acceptable compositions are disclosed in Remington's Pharmaceutical Sciences, 16th Edition, EW Mart in (Mack Publ i shing Co., Eas ton, Pa., 1980). A well-known technique for its preparation is hereby incorporated by reference in its entirety.
- any conventional carrier medium that is incompatible with the compounds of the present invention for example, by creating any undesirable biological effects, or otherwise interacting in a deleterious manner with any other component of the pharmaceutically acceptable composition, it is within the scope of the present invention application.
- materials that can be used as pharmaceutically acceptable carriers include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins such as human serum albumin, buffer substances such as phosphate, glycerol, Sorbic acid or potassium sorbate, a mixture of partial glycerides of saturated plant fatty acids, water, salt or electrolytes such as fish oil Protein, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salt, colloidal silica, magnesium trisilicate, polyvinylpyrrolidone, polyacrylate, wax, polyethylene-polypropylene-block copolymer, Lanolin, sugars such as lactose, glucose and sucrose; starches such as corn starch and potato starch; cellulose and its derivatives such as sodium carboxymethylcellulose, ethylcellulose and cellulose acetate; scutellaria powder; malt Gelatin; talc; excipients such as cocoa butter and sup
- a ninth aspect of the invention relates to the use of the nucleic acid structure of formula (I) or a pharmaceutically acceptable salt or solvate thereof for the manufacture of a medicament for the treatment of a viral infection.
- the virus is HIV-1 virus.
- a tenth aspect of the invention relates to a method of treating a viral infection, the method comprising administering to a patient in need of such treatment a therapeutically effective amount of a nucleic acid structure of formula (I) or a pharmaceutically acceptable salt or solvate thereof.
- the virus is an HIV-1 virus.
- 5-(tert-Butyldiphenylsilyloxy-ethyl)-deoxyuridine was synthesized as described in the literature 24. 5-(tert-Butyldiphenylsilyloxy-ethyl)-deoxyuridine (0.9 g, 1.76 mmol) was dissolved in DCM (30 mL). Toluene (0.24 g, 3.53 mmol) TBDPS-CI (0.53 g, 1.94 mmol) was then added in portions.
- the solid phase phosphoramidite triester method mainly comprises the following steps: (1) Deprotection: removing the DMT group on the 5'-hydroxyl group of the terminal nucleotide of the resin beads (CPG) with trifluoroacetic acid to release the hydroxyl group; (2) Condensation: The phosphoramidite monomer is activated with tetrazolium to form a reactive intermediate of phosphoramidite tetrazolium, and undergoes nucleophilic reaction with the 5'-hydroxyl group of the terminal nucleotide of the resin bead; (3) Blocking: To avoid the occurrence of side reactions, the unreacted hydroxyl group in the coupling reaction is blocked with an acetyl group; (4) Oxidation: The phosphoramidite monomer is converted into a stable phosphoramide monomer, and proceeds to the next cycle.
- the synthesized sequence was removed in concentrated ammonia water for 2.5 h, removed from the CPG, and the protective group of the natural monomer was removed.
- the sequence containing the TBDPS protecting group was detected (LK-CW-G02 to LK). - CW- G15).
- Ammonia water was distilled off under reduced pressure, and dissolved with a small amount of water to obtain a colorless, transparent aqueous solution. All sequences were purified by HPLC (column: Diamons il, C18, 5 ⁇ , 250 x 4. 6 mm) in a 0.1 M ammonium acetate buffer solution with a gradient of 30 min CH 3 CN from 20 % to 100%. Table 2 shows the retention times of the partial sequences.
- the retention time of the nucleic acid structure was purified by HPLC.
- Luciferase cell fusion experiments were used to detect cell fusion mediated by HIV-1.
- the TZM-bl cells were first plated on a 96-well plate, 50 ⁇ l/well of cell suspension at a concentration of 500,000 / ml, and cultured for 24 hours under conditions of 37.
- the HL2/3 cells were then plated on 96-well plates plated with TZM-bl cells, 50 ⁇ l/well of cell suspension at a concentration of 1.7 million/ml, and column 12 of the 96-well plate was used as the lowest signal blank.
- HL2/3 cells were not added and replaced with 50 ⁇ l/well of medium.
- the sample to be tested (the sample is diluted 4 times in a round bottom 96-well plate to a 10th hole, and 11 and 12 holes contain only the medium as a control.
- the sample is prepared before adding HL2/3 cells. ).
- the two cells were fused at 37 for 6-8 h, then the cells were lysed, and 25 ⁇ l / ⁇ L of cell lysate was taken to the corresponding well on a brick plate (cos tar, Whi te polys tyrene; Corning incorporated, USA), and then added.
- 40 ⁇ l/well of fluorescent reagent was detected in a microplate reader.
- the activity data of some nucleic acid structures are shown in Table 4 and Table 5. Inhibition of modified deoxynucleotide sequences HIV-1 fusion activity
- LK-CX-D10 5' -d (DMT-i-eAGCGTATG) -V 3.20 ⁇ 1.15 LK-CX-Dll ' -d (KaTCGCATAC) -5' Numbering sequence (5'-3') ic 5 .
- Oligonucleotides endowed with anti-HIV activity synthesis and biophysical properties. Bioconjugate Chem. , 18, 1194-1204.
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Abstract
Description
具有抗 H I V-1 融合活性的修饰的核酸结构 技术领域 Modified nucleic acid structure having anti-H I V-1 fusion activity
本发明涉及修饰的核酸结构或其药学上可接受的盐或溶剂合 物, 所述核酸结构的双螺旋、 三螺旋和四螺旋高级结构、 它们的 制备方法及其用于制备抗病毒药物的用途。 发明背景 The present invention relates to a modified nucleic acid structure, or a pharmaceutically acceptable salt or solvate thereof, a double helix, a triple helix and a four helix high-order structure of the nucleic acid structure, a process for the preparation thereof, and use thereof for preparing an antiviral drug . Background of the invention
开发核酸药物用于抗肿瘤, 抗病毒和心血管疾病治疗等是近 年来的热点课题, 包括反义核酸, 核酶, 小干扰 RM (s iRNA)和适 配子等。 前三者是针对致病基因或调控相关序列表达而设计的基 因治疗药物, 而适配子类型的核酸则以其独特的高级结构与特定 的靶蛋白发生特异性结合, 达到抑制靶蛋白功能的目的。 The development of nucleic acid drugs for anti-tumor, anti-viral and cardiovascular disease treatments has been a hot topic in recent years, including antisense nucleic acids, ribozymes, small interfering RM (s iRNA) and adaptors. The first three are gene therapy drugs designed for the expression of disease-causing genes or regulatory related sequences, while the aptamer-type nucleic acids specifically bind to specific target proteins with their unique high-level structures to achieve the function of inhibiting target proteins. purpose.
在细胞内, 核酸以多种高级结构类型存在, 除了普遍存在的 DM双螺旋结构外, 未知的 RNA或 DNA单链的高级结构还可能参 与到细胞的很多生命过程中,发挥各种已知和未知的功能。例如, 由富 G片段形成的四螺旋结构具有重要的生物学意义, 众所周知 的端粒结构含有高度重复的富 G序列, (GGGTTA) n, 它与细胞的寿 命是密切相关的。在其他基因序列中也发现了富 G片段,如 c-myc 启动子, 免疫球蛋白转化区, 胰岛素调节序列等, 参与多种功能 的调节。 已知在细胞内潜在的 G-四螺旋结构达 375000个, 它们 具体参与哪些生命过程还有待更深入的研究。 In cells, nucleic acids exist in a variety of high-order structural types. In addition to the ubiquitous DM duplex structure, unknown RNA or high-stranded structures of DNA single strands may be involved in many life processes of cells, playing various known and Unknown feature. For example, the four-helix structure formed by the G-rich fragment has important biological significance. The well-known telomere structure contains a highly repetitive G-rich sequence, (GGGTTA) n, which is closely related to cell life. G-rich fragments, such as the c-myc promoter, immunoglobulin transformation region, insulin regulatory sequences, etc., have also been found in other gene sequences, and are involved in the regulation of multiple functions. It is known that there are 375,000 potential G-tetra-helix structures in cells, and the specific life processes involved in them have yet to be further studied.
G-四螺旋结构是一类非常独特的高级结构, 它由 4段含连续 的 G的核苷酸片段所形成, G片段可以来自链内或链间。 四条片 段 (链)上的四个碱基 G可通过氢键作用构成一个四联体平面, 这 样的平面连续堆积形成四螺旋结构, 阳离子, 如 Na+和 Γ, 为这一 结构提供进一步的稳定性, 它们与鸟嘌呤的叛基之间产生静电相 互作用。 四螺旋整体构象的形式多种多样, 受到阳离子的种类, 连接的环的长短, 末端基团(引入的或碱基本身)等因素的影响。 四螺旋结构在生理盐浓度条件下, 其熔解温度在 60 以上, 能在 生理条件下稳定存在, 这也可能是生物进化选择其发挥生物功能 的结构基础。 The G-tetra-helical structure is a very unique class of high-order structures formed by four stretches of nucleotide fragments containing contiguous G, which can be derived from within or between chains. The four bases G on the four fragments (chains) can form a quadruplex plane by hydrogen bonding, and such planes are continuously stacked to form a four-helix structure, and cations such as Na+ and yttrium are used for this. The structure provides further stability and they create electrostatic interactions with the renegade of the guanine. The overall conformation of the four helix is in a variety of forms, depending on factors such as the type of cation, the length of the attached ring, the terminal group (introduced or the base itself). Under the condition of physiological salt concentration, the four-helical structure has a melting temperature above 60 and can exist stably under physiological conditions. This may also be the structural basis for biological evolution to select its biological function.
具有生物学功能的非生物源性的 G-四螺旋结构最早是从核 酸序列库歸选得到的, 通过特异性结合特定蛋白而发挥作用, 如 特异性结合凝血酶的适配子。 通过组合化学方法, 还发现了多个 含 G-四螺旋的结构具有抑制 HIV- 1的活性。0jwang等人报道了一 个 17mer的 G-四螺旋结构,具有抑制 HIV- 1整合酶的活性。 Wyatt 等人用组合化学方法筛选了另一类具有抗 HIV活性的 G-四螺旋结 构, 5320: 5, -d (TTGGGGTT) -3/ , 它在 Γ存在下形成稳定的分子间 四螺旋结构, 通过结合 HIV病毒表面蛋白 gpl20的 V3 loop, 抑 制 HIV- 1从细胞到细胞和从病毒到细胞的感染。 5' - d (TGGGAG) -3' 是从一个 15mer的 G-四螺旋结构简化而来的, 在它的 5' -端的糖 环的 5' -羟基上引入一个大的脂溶性基团, 这个脂溶性基团和四 螺旋一起赋予该结构抑制 HIV融合的活性。 The biologically functional non-biological G-tetra-helical structure was originally selected from a library of nucleic acid sequences and functions by specifically binding to a specific protein, such as an aptamer that specifically binds to thrombin. It has also been found by combinatorial chemistry that a plurality of G-tetra-helix-containing structures have an activity of inhibiting HIV-1. 0jwang et al. reported a 17-mer G-tetra-helical structure with activity to inhibit HIV-1 integrase. Wyatt et al. used a combinatorial chemistry method to screen another G-tetra-helix structure with anti-HIV activity, 5320: 5 , -d (TTGGGGTT) -3 / , which forms a stable intermolecular four-helix structure in the presence of ruthenium. Infection of HIV-1 from cells to cells and from viruses to cells is inhibited by binding to the V3 loop of the HIV viral surface protein gpl20. 5'-d (TGGGAG) -3' is simplified from a 15mer G-tetra-helix structure, introducing a large fat-soluble group on the 5'-hydroxyl group of its 5'-end sugar ring. The fat-soluble group together with the four helix confers activity to the structure to inhibit HIV fusion.
目前, 已有多种小分子药物以及肽类药物用于 HIV- 1治疗, 对于控制艾滋病的危害发挥了巨大作用, 不幸的是, 这些药物在 治疗过程中会出现不同程度的耐药性。 因此, 不断发展新结构、 新机制的抗 HIV-1药物仍是目前药物化学针对 HIV-1感染的一个 热点研究方向。 At present, a variety of small molecule drugs and peptide drugs have been used for HIV-1 treatment, which has played a huge role in controlling the harm of AIDS. Unfortunately, these drugs have different degrees of drug resistance during the treatment. Therefore, the development of new structures and mechanisms for anti-HIV-1 drugs is still a hot research direction for medicinal chemistry against HIV-1 infection.
本发明基于核酸四螺旋抗 HIV- 1作用的结构要求, 即核酸骨 架的聚阴离子作用和核酸结构末端一定体积大小的脂溶性基团, 提出新的修饰策略, 通过化学修饰和全新的骨架设计来寻找活性 更高、 更适于作为药物的新结构, 作为筛选抗 HIV-1药物的有效 途径之一。 在 5' -核苷单体的碱基上引入各种脂溶性基团修饰, 和 /或与 5' -核糖上的修饰进行组合; 开发双螺旋、 三螺旋、 和四 螺旋骨架结构, 发现具有抑制 HIV-1融合活性的新结构, 作为抗 HIV-1感染的新的治疗候选药物。 发明内容 The present invention is based on the structural requirements of the action of the nucleic acid four-helix anti-HIV-1, that is, the polyanion of the nucleic acid backbone and the fat-soluble group of a certain volume of the nucleic acid structure end, propose a new modification strategy, through chemical modification and a new skeleton design. Looking for activity A new structure that is higher and more suitable as a drug, as one of the effective ways to screen anti-HIV-1 drugs. Introducing various fat-soluble group modifications at the base of the 5'-nucleoside monomer, and/or combining with modifications on the 5'-ribose; developing a double helix, a triple helix, and a four helix backbone structure, A new structure that inhibits HIV-1 fusion activity as a new therapeutic candidate against HIV-1 infection. Summary of the invention
发明概述 Summary of invention
本发明涉及一类具有抗 HIV-1融合活性的修饰的核酸结构, 其序列如通式(I)所示: The present invention relates to a modified nucleic acid structure having anti-HIV-1 fusion activity, the sequence of which is as shown in the general formula (I):
(I)(I)
R1连接在核苷酸序列的 5' -端, 独立地选自通式 1-6 的核苷 单体结构,所述单体结构以 3' -羟基或 5' -羟基与所述核苷酸序列 连接; R 1 is attached at the 5'-end of the nucleotide sequence, independently selected from the nucleoside monomer structure of Formula 1-6, which is 3'-hydroxy or 5'-hydroxy with the nucleoside Acid sequence linkage;
R2连接在核苷酸序列的 y -端, 独立地选自: 氢原子, 甲基 磷酰基, 2-氯苯基磷酰基, 甲基硫代磷酰基, 甲基膦酰基, 甲基 硫代膦酰基, 苯基膦酰基, 2-羟乙基磷酰基, 2-羟乙基硫代磷酰 基, 苯基磷酰基, 4-氯苯基磷酰基, 2-羟基- 3-乙酰胺基-丙基; R 2 is attached at the y-terminus of the nucleotide sequence, independently selected from the group consisting of: hydrogen atom, methylphosphoryl group, 2-chlorophenylphosphoryl group, methylthiophosphoryl group, methylphosphono group, methylthio group Phosphono, phenylphosphono, 2-hydroxyethylphosphoryl, 2-hydroxyethylthiophosphoryl, phenylphosphoryl, 4-chlorophenylphosphoryl, 2-hydroxy-3-acetamido-propyl base;
R3为不存在, 或者选自氢, C1-4烷基, C1- 4烷氧基, 卤素原 子, 被氨基或 C1-4烷氧基或卤素原子取代的 C1-4烷基, 取代或 未取代的芳基和取代或未取代的芳烷基; R 3 is absent or is selected from hydrogen, C 1-4 alkyl, C 1-4 alkoxy, halogen atom, C 1-4 alkyl substituted by amino or C 1-4 alkoxy or halogen atom, substituted or not Substituted aryl and substituted or unsubstituted aralkyl;
X选自氧原子, 硫原子, NH2, NH和 C1-6亚烷基链; 其中当 X 为 NH2时, R3不存在; X is selected from the group consisting of an oxygen atom, a sulfur atom, an NH 2 , NH and a C1-6 alkylene chain; wherein when X is NH 2 , R 3 is absent;
R4为不存在,或者选自氢原子, C1-6烷基, C1- 6烷氧基, C1-6 烷氨基,卤素原子,被氨基或 C1-6烷氧基或卤素原子取代的 C1-6 烷基, 取代或未取代的芳基和取代或未取代的芳烷基; R 4 is absent or is selected from a hydrogen atom, a C1-6 alkyl group, a C1-6 alkoxy group, a C1-6 alkylamino group, a halogen atom, and a C1-substituted by an amino group or a C1-6 alkoxy group or a halogen atom. a 6 alkyl group, a substituted or unsubstituted aryl group and a substituted or unsubstituted aralkyl group;
Y 选自氧原子, 硫原子, NH2, NH, 氢原子, 氟原子和 C1-6 亚烷基, 其中当 Y为 H, NH2或 F时, R3不存在; Y is selected from the group consisting of an oxygen atom, a sulfur atom, NH 2 , NH, a hydrogen atom, a fluorine atom and a C1-6 alkylene group, wherein when Y is H, NH 2 or F, R 3 is absent;
1¾和 m2表示含碱基 B4和 B1- B2- B3- B5的结构单元的个数, 各自 独立地为 1-15; 13⁄4 and m 2 represent the number of structural units containing bases B 4 and B 1 -B 2 -B 3 - B 5 , each independently being 1-15;
B1, B2, B3, B4和 B5为核苷酸序列上的碱基, 各自独立地选自 A, G, C, T, mC, mG和非天然碱基及其组合; B 1 , B 2 , B 3 , B 4 and B 5 are bases on a nucleotide sequence, each independently selected from the group consisting of A, G, C, T, mC, mG and unnatural bases, and combinations thereof;
X1为不存在, 或者选自 C1- 6亚烷基, C2- 6亚烯基和 C2- 6亚 炔基, 其中所述 C1- 6亚烷基, C2- 6亚烯基和 C2- 6亚炔基中的一 个或多个亚甲基任选地被氧原子, 硫原子, 酰胺基或酯基替代;X 1 is absent or is selected from a C1-6 alkylene group, a C2- 6 alkenylene group and a C2- 6 alkynylene group, wherein the C1-6 alkylene group, the C2- 6 alkenylene group and the C2- 6 group One or more methylene groups in the alkynylene group are optionally replaced by an oxygen atom, a sulfur atom, an amide group or an ester group;
X2为不存在, 或者选自氧原子、 CH2、 NH和硫原子; X 2 is absent or is selected from an oxygen atom, CH 2 , NH and a sulfur atom;
X3选自 CH和氮原子; X 3 is selected from the group consisting of CH and a nitrogen atom;
Z选自碳原子或硅原子; Z is selected from a carbon atom or a silicon atom;
R5, R6和 R7相同或不同, 各自独立地选自 C1- 4烷基, 芴基, 咕吨基, 未取代或被 R8单取代或多取代的 C6-20芳基, 和未取代 或被 R8单取代或多取代的蒽醌基; R 5 , R 6 and R 7 are the same or different and are each independently selected from C1-4 alkyl, fluorenyl, xanthenyl, unsubstituted or C6-20 aryl which is mono- or polysubstituted by R 8 , and Replace Or a thiol group which is mono- or polysubstituted by R 8 ;
R8为 C1-4烷基, C1-4 卤代烷基, 卤素原子, 硝基, 氰基, 氨基, C1- 4烷氧基, C1- 4烷硫基,取代或未取代的芳基,芳氧基, 芳烷氧基; R 8 is C1-4 alkyl, C1-4 haloalkyl, halogen atom, nitro, cyano, amino, C1-4 alkoxy, C1-4 alkylthio, substituted or unsubstituted aryl, aryloxy Alkyloxy group;
在核苷单体 1- 3中与 S' -O或 X2连接的 R5, R6, R7和 Z组成的In the nucleoside monomer 1-3, R 5 , R 6 , R 7 and Z are bonded to S'-O or X 2
R7 R 7
R、|— R, |—
基团 R Z_相同或不同, 可以同时存在, 或者单独存在, 此时其 当核苷单体 1-3 中 5'位置不存在基团The groups R Z_ are the same or different and may exist simultaneously or separately, at this time When the nucleoside monomer 1-3 has no group at the 5' position
R7 R 7
R Z—时, 核苷单体 1-3以 5' -羟基与所述核苷酸序列连接。 本发明基于四螺旋结构片段对抑制 HIV- 1进入活性的结构要 求, 提出了针对四螺旋结构的新的末端修饰途径。 When R Z —, nucleoside monomers 1-3 are linked to the nucleotide sequence by a 5'-hydroxyl group. The present invention is based on the structural requirements of the four-helix structure fragment for inhibiting the entry activity of HIV-1, and proposes a novel terminal modification pathway for the four-helix structure.
本发明首次提出并证明了修饰的双螺旋、 三螺旋核酸结构同 样具有较好的抑制 HIV进入的活性。 The present invention firstly proposes and demonstrates that the modified double helix and triple helix nucleic acid structures also have better activity for inhibiting HIV entry.
本发明涉及在末端结构单元的多个位置上引入各种脂溶性基 团; 并将这种修饰引入核酸序列中, 在模拟生理条件下形成稳定 的高级结构,如双螺旋、三螺旋、和四螺旋结构,表现出抑制 HIV-1 进入的活性,具有潜在的作为抗 HIV-1进入候选药物的研发价值。 The present invention relates to the introduction of various fat-soluble groups at a plurality of positions of terminal structural units; and the introduction of such modifications into nucleic acid sequences to form stable high-order structures under simulated physiological conditions, such as double helices, triple helices, and four The helical structure, which exhibits activity against HIV-1 entry, has potential research and development value as an anti-HIV-1 entry drug candidate.
本发明所涉及的这类新结构核酸, 与现有上市小分子或肽类 抗 HIV药物具有显著的结构差异, 新结构有利于克服现有抗 HIV 药物的耐药性。 The novel structural nucleic acids involved in the present invention have significant structural differences from existing marketed small molecule or peptide anti-HIV drugs, and the new structure is advantageous for overcoming the resistance of existing anti-HIV drugs.
本发明提供修饰单体的设计与合成方法, 包括各种脂溶性基 团被引入核苷单体的碱基和核糖上, 并转化为适于核酸固相合成 的亚磷酰胺单体。 The present invention provides a method of designing and synthesizing a modified monomer comprising introducing various fat-soluble groups into the base of the nucleoside monomer and ribose, and converting into a phosphoramidite monomer suitable for solid phase synthesis of the nucleic acid.
本发明涉及含修饰单体的核酸结构片段的制备和纯化方法。 本发明还涉及各种修饰在核酸高级结构上的组装, 包括在The present invention relates to a process for the preparation and purification of nucleic acid structural fragments containing modified monomers. The invention also relates to the assembly of various modifications on the high-level structure of nucleic acids, including
5' -核苷单体的碱基上的各种修饰, 5' -核糖上的修饰, 和磷酸二 酯键上的修饰进行组合,发现具有抑制 HIV-1进入活性的新结构, 作为抗 HIV-1感染的新的治疗候选药物。 Various modifications in the base of the 5'-nucleoside monomer, modification on the 5'-ribose, and modification on the phosphodiester bond, revealed a novel structure that inhibits HIV-1 entry activity, as an anti-HIV -1 new therapeutic candidate for infection.
在通式(I)中, B1, B2, B3, B4, B5所产生的序列组成中, 含一 个至多个 GGG或 GGGG片段,则形成四螺旋结构; 如果碱基组成为 全嘌呤或全嘧啶, 则形成三螺旋结构; 如果是天然碱基的随机组 合, 则形成双螺旋结构。 并且, 在三螺旋和双螺旋结构中的互补 核酸序列可以是天然的, 也可以是本发明所定义的修饰序列。 In the general formula (I), the sequence composition produced by B 1 , B 2 , B 3 , B 4 , B 5 contains one or more GGG or GGGG fragments, and a four-helix structure is formed; A purine or a perpyrimidine forms a triple helix structure; if it is a random combination of natural bases, a double helix structure is formed. Also, the complementary nucleic acid sequence in the triple helix and the double helix structure may be natural or may be a modified sequence as defined in the present invention.
非天然碱基包括针对 A, G, C, T等四个碱基的修饰而产生的 结构, 以提高螺旋结构的热稳定性、 化学稳定性和酶稳定性的修 饰为主: 针对 A和 G的五员环部分的修饰, 如通式 2和 3中的碱 基部分; 在 T的 5位引入取代基, 如通式 1的碱基部分等; 取代 基还可包括氯, 溴, 碘等卤素原子; Non-natural bases include structures resulting from the modification of four bases such as A, G, C, T, etc., to improve the thermal stability, chemical stability and enzyme stability of the helical structure: for A and G Modification of the five-membered ring moiety, such as the base moiety in Formulas 2 and 3; introduction of a substituent at the 5-position of T, such as the base moiety of Formula 1, etc.; substituents may also include chlorine, bromine, iodine, etc. Halogen atom;
核苷单体 1-6用于核酸结构修饰时, 是以亚磷酰胺单体的形 式用于核酸结构的合成,它们分别以亚磷酰胺单体 7- 12用于固相 合成通式(I) , 如下所示。 因此, 本发明还提供亚磷酰胺单体结构 7-12及其合成方法。 When nucleoside monomers 1-6 are used for nucleic acid structure modification, they are used in the synthesis of nucleic acid structures in the form of phosphoramidite monomers, which are used for solid phase synthesis of phosphorous amide monomer 7-12, respectively. ) , As follows. Accordingly, the present invention also provides phosphoramidite monomer structures 7-12 and methods for their synthesis.
N N
8 9 8 9
10 1 1 12 10 1 1 12
用于核酸结构合成的亚磷酰胺单体结构 7-12 其中, a phosphoramidite monomer structure for nucleic acid structure synthesis 7-12 wherein
亚磷酰胺单体 7-12 中, X1, X2, X3, Z, R5, R6, R7的定义与 通式(I)中相同; In the phosphoramidite monomer 7-12, X 1 , X 2 , X 3 , Z, R 5 , R 6 , R 7 have the same meanings as in the formula (I);
R9为腺嘌呤及其类似物的 6-位氨基的保护基,包括苯甲酰基, 二正丁胺基甲基, 二甲胺基甲基, 乙酰基, 丙酰基, 丁酰基, 甲 酰基, 其中, 优选苯甲酰基, 二正丁胺基甲基, 二甲胺基甲基, 乙酰基; R 9 is a protecting group for the 6-position amino group of adenine and its analogs, including benzoyl, di-n-butylaminomethyl, dimethylaminomethyl, acetyl, propionyl, butyryl, formyl, Among them, a benzoyl group, a di-n-butylaminomethyl group, a dimethylaminomethyl group, an acetyl group;
R1"为鸟嘌呤及其类似物的 2-氨基的保护基, 包括异丁酰基, 二正丁胺基甲基, 二甲胺基甲基, 乙酰基, 丙酰基, 丁酰基, 苯 甲酰基, 甲酰基, 其中, 优选异丁酰基, 二正丁胺基甲基, 二甲 胺基甲基, 乙酰基。 R 1 " is a 2-amino protecting group for guanine and its analogs, including isobutyryl, di-n-butylaminomethyl, dimethylaminomethyl, acetyl, propionyl, butanoyl, benzoyl , formyl, wherein, isobutyryl, di-n-butylaminomethyl, dimethylaminomethyl, acetyl is preferred.
本发明还涉及式(I)所示的核酸结构、 其药学上可接受的盐、 或其溶剂合物。 The present invention also relates to a nucleic acid structure represented by the formula (I), a pharmaceutically acceptable salt thereof, or a solvate thereof.
本发明涉及式(I)所示的核酸结构, 采用其它核酸药物(如 s iRNA, 反义核酸, 适配子, 核酶等)的转运策略: 与各种阳离子 聚合物如阳离子脂质体一起形成的复合物; 与 PEG、 胆固醇、 靶 细胞表面受体的配体等结合, 以改善这类核酸药物的转运效率。 The present invention relates to the nucleic acid structure represented by the formula (I), using other nucleic acid drugs (such as Transport strategy for s iRNA, antisense nucleic acids, aptamers, ribozymes, etc.: complexes formed with various cationic polymers such as cationic liposomes; ligands with PEG, cholesterol, target cell surface receptors, etc. Binding to improve the transport efficiency of such nucleic acid drugs.
本发明还涉及药物组合物,所述药物组合物包含通式(I)的核 酸结构或其药学上可接受的盐或溶剂化物与药学上可接受的载体 或赋形。 在一个实施方案中, 所述组合物还包括其他治疗病毒感 染的药物。 在一个实施方案中, 所述病毒特别是 HIV-1病毒。 The invention further relates to a pharmaceutical composition comprising a nucleic acid structure of formula (I), or a pharmaceutically acceptable salt or solvate thereof, and a pharmaceutically acceptable carrier or excipient. In one embodiment, the composition further includes other drugs that treat viral infections. In one embodiment, the virus is in particular an HIV-1 virus.
本发明还涉及通式(I)的核酸结构或其药学上可接受的盐或 溶剂化物在制备治疗病毒感染的药物中的用途。 在一个实施方案 中, 所述病毒是 HIV-1病毒。 The invention further relates to the use of a nucleic acid structure of the formula (I) or a pharmaceutically acceptable salt or solvate thereof for the manufacture of a medicament for the treatment of a viral infection. In one embodiment, the virus is an HIV-1 virus.
本发明还涉及治疗病毒感染的方法, 所述方法包括给予需要 这种治疗的患者治疗有效量的通式(I)的核酸结构或其药学上可 接受的盐或溶剂化物。 在一个实施方案中, 所述病毒是 HIV-1病 毒。 附图说明 The invention further relates to a method of treating a viral infection, the method comprising administering to a patient in need of such treatment a therapeutically effective amount of a nucleic acid structure of formula (I) or a pharmaceutically acceptable salt or solvate thereof. In one embodiment, the virus is an HIV-1 virus. DRAWINGS
图 1包含通式(I)的四螺旋核酸结构的 CD谱图,是确定本发明 通式(I)核酸高级结构的圆二色傳傳图, 其中 01至 07分别指表 2 中的 LK-CW-01至 LK-CW-07。 LK-CW-01至 LK-CW-07均显示出平 行四螺旋结构的特征 CD谱。 Figure 1 contains a CD spectrum of a four-helix nucleic acid structure of the general formula (I), which is a circular dichroic transmission map for determining the high-order structure of the nucleic acid of the general formula (I) of the present invention, wherein 01 to 07 respectively refer to LK- in Table 2; CW-01 to LK-CW-07. LK-CW-01 to LK-CW-07 both show the characteristic CD spectrum of the parallel four-helical structure.
图 2包含通式(I)的双螺旋核酸结构 D01+D02的 CD谱图,是确 定本发明通式(I)核酸高级结构的圆二色谱谱图, 其中结构 D01+D02显示出双螺旋结构的特征 CD峰。 发明详述 Figure 2 contains a CD spectrum of the double-stranded nucleic acid structure D01+D02 of the general formula (I), which is a circular dichroism chromatogram for determining the high-order structure of the nucleic acid of the general formula (I) of the present invention, wherein the structure D01+D02 shows a double helix structure Characteristic CD peak. Detailed description of the invention
本发明所引述的所有文献, 它们的全部内容通过引用并入本 文, 并且如果这些文献所表达的含义与本发明不一致时, 以本发 明的表述为准。 此外, 本发明使用的各种术语和短语具有本领域 技术人员公知的一般含义, 即便如此, 本发明仍然希望在此对这 些术语和短语作更详尽的说明和解释, 提及的术语和短语如有与 公知含义不一致的, 以本发明所表述的含义为准。 All documents cited in the present invention, the entire contents of which are incorporated herein by reference. And if the meaning expressed by these documents is inconsistent with the present invention, the expression of the present invention shall prevail. Moreover, the various terms and phrases used in the present invention have the ordinary meanings well known to those skilled in the art, and even though the present invention is intended to provide a more detailed description and explanation of the terms and phrases herein, such terms and phrases are Inconsistent with the well-known meaning, the meaning expressed in the present invention shall prevail.
本发明利用核苷单体 1-6对核酸序列通式(I)进行结构修饰, 获得具有抗病毒特别是抗 HIV-1病毒的生物活性。 The present invention utilizes nucleoside monomers 1-6 to structurally modify the nucleic acid sequence of formula (I) to obtain biological activity against viruses, particularly anti-HIV-1 viruses.
本发明的第一方面涉及通式(I)的寡聚核苷酸或其药学上可 接 A first aspect of the invention relates to an oligonucleotide of the formula (I) or a pharmaceutically acceptable agent thereof
(I) (I)
其中 among them
R1连接在核苷酸序列的 5' -端, 独立地选自通式 1-6 的核苷 单体结构,所述单体结构以 3' -羟基或 5' -羟基与所述核苷酸序列 连接; R 1 is attached at the 5'-end of the nucleotide sequence, independently selected from the nucleoside monomer structure of Formula 1-6, which is 3'-hydroxy or 5'-hydroxy with the nucleoside Acid sequence linkage;
R2连接在核苷酸序列的 y -端, 独立地选自: 氢原子, 甲基 磷酰基, 2-氯苯基磷酰基, 甲基硫代磷酰基, 甲基膦酰基, 甲基 硫代膦酰基, 苯基膦酰基, 2-羟乙基磷酰基, 2-羟乙基硫代磷酰 基, 苯基磷酰基, 4-氯苯基磷酰基和 2-羟基- 3-乙酰胺基-丙基; 优选氢原子, 甲基磷酰基, 2-氯苯基磷酰基, 甲基硫代磷酰基, 2 -羟乙基磷酰基或 2-羟基- 3-乙酰胺基-丙基; R 2 is attached at the y-terminus of the nucleotide sequence, independently selected from the group consisting of: hydrogen atom, methylphosphoryl group, 2-chlorophenylphosphoryl group, methylthiophosphoryl group, methylphosphono group, methylthio group Phosphono, phenylphosphono, 2-hydroxyethylphosphoryl, 2-hydroxyethylthiophosphoryl, phenylphosphoryl, 4-chlorophenylphosphoryl and 2-hydroxy-3-acetamido-propyl Preferred; a hydrogen atom, a methylphosphoryl group, a 2-chlorophenylphosphoryl group, a methylthiophosphoryl group, a 2-hydroxyethylphosphoryl group or a 2-hydroxy-3-acetamido-propyl group;
R3为不存在, 或者选自氢, C1-4烷基, C1- 4烷氧基, 卤素原 子, 被氨基或 C1-4烷氧基或卤素原子取代的 C1-4烷基, 优选为 甲基, 乙基, 2-氨基乙基, 2-甲氧基乙基, 丙基, 异丙基, 丁基, 异丁基, 仲丁基或叔丁基, 其中更优选甲基, 乙基, 2-氨基甲基, 2-甲氧基乙基或丙基; 或者 R3为取代或未取代的芳基, 其中芳基 是指含 6-20个碳原子,优选 6-16个碳原子, 更优选 6-10个碳原 子的芳环结构, 此芳基无取代基或具有至少一个取代基; 包括苯 基, C1-4烷基苯基 (如 2 -甲基苯基,或 3 -乙基苯基),卤代苯基 (如 2 -氟苯基, 2-氯苯基, 4-氯苯基, 2-溴苯基或 2-碘苯基), 硝基 苯基 (如 2-硝基苯基或 4-硝基苯基), C1-4烷氧基苯基 (如 4-甲氧 基苯基, 或 4-乙氧基苯基), C1- 4烷硫基苯基 (如 4-甲硫基苯基, 或 4-乙硫基苯基), 萘基, 菲基, 蒽基和芘基, 其中, 优选无取 代的苯基, 甲氧基苯基, 卤代苯基, 和硝基苯基; 或者 R3为取代 或未取代的芳烷基, 其中芳烷基是含 1-4个碳原子的烷基, 其至 少被一个(1-3个, 优选 1个)上述芳基所取代, 包括苄基, 甲基 苄基, 乙基苄基, 甲氧基苄基, 乙氧基苄基, 氟代苄基, 氯代苄 基, 溴代苄基, 氯代萘甲基, 茚甲基, 菲甲基, 蒽甲基, 二苯基 甲基,三苯基甲基, 1-苯乙基, 2-苯乙基, 2, 2-二苯基乙基, 2, 2, 2- 三苯基乙基, 3, 3, 3-三苯基丙基, 1-萘乙基, 2-萘乙基, 1-苯基 丙基, 2 -笨基丙基, 3 -笨基丙基, 1 -蔡基丙基; X选自氧原子, 硫原子, NH2, NH和 C1- 6亚烷基链, 如亚甲 基, 亚乙基, 亚丙基, 亚丁基, 亚戊基; 其中当 X为 NH2时, R3 不存在; 优选氧原子, 硫原子或亚甲基; R 3 is absent or is selected from hydrogen, C 1-4 alkyl, C 1-4 alkoxy, halogen atom, C 1-4 alkyl substituted by amino or C 1-4 alkoxy or halogen atom, preferably A Base, ethyl, 2-aminoethyl, 2-methoxyethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl or tert-butyl, more preferably methyl, ethyl, 2-aminomethyl, 2-methoxyethyl or propyl; or R 3 is a substituted or unsubstituted aryl group, wherein aryl means 6-20 carbon atoms, preferably 6-16 carbon atoms, More preferably, an aromatic ring structure of 6 to 10 carbon atoms, the aryl group having no substituent or having at least one substituent; including a phenyl group, a C1-4 alkylphenyl group (e.g., 2-methylphenyl group, or 3-B Phenylphenyl), halophenyl (such as 2-fluorophenyl, 2-chlorophenyl, 4-chlorophenyl, 2-bromophenyl or 2-iodophenyl), nitrophenyl (such as 2- Nitrophenyl or 4-nitrophenyl), C1-4 alkoxyphenyl (such as 4-methoxyphenyl, or 4-ethoxyphenyl), C1-4 alkylthiophenyl ( Such as 4-methylthiophenyl, or 4-ethylthiophenyl), naphthyl, phenanthryl, anthracenyl and fluorenyl, among them, An unsubstituted phenyl group, a methoxyphenyl group, a halogenated phenyl group, and a nitrophenyl group; or R 3 is a substituted or unsubstituted aralkyl group, wherein the aralkyl group has 1 to 4 carbon atoms An alkyl group substituted with at least one (1-3, preferably one) of the above aryl groups, including benzyl, methylbenzyl, ethylbenzyl, methoxybenzyl, ethoxybenzyl, fluoro Benzyl, chlorobenzyl, bromobenzyl, chloronaphthylmethyl, fluorenylmethyl, phenanthromethyl, fluorenylmethyl, diphenylmethyl, triphenylmethyl, 1-phenylethyl, 2-Phenylethyl, 2,2-diphenylethyl, 2, 2, 2-triphenylethyl, 3, 3, 3-triphenylpropyl, 1-naphthylethyl, 2-naphthylethyl Base, 1-phenylpropyl, 2-phenylpropyl, 3-phenylpropyl, 1-calylpropyl; X is selected from the group consisting of oxygen atoms, sulfur atoms, NH 2 , NH and C1-6 alkylene chains, such as methylene, ethylene, propylene, butylene, pentylene; wherein when X is NH 2 , R 3 is absent; preferably an oxygen atom, a sulfur atom or a methylene group;
R4为不存在,或者选自氢原子, C1-6烷基, C1- 6烷氧基, C1-6 烷氨基,卤素原子,被氨基或 C1-6烷氧基或卤素原子取代的 C1-6 烷基, 优选甲基, 乙基, 2-氨基乙基, 甲氧基亚甲基, 2-甲氧基 亚乙基, 3-甲氧基亚丙基, 2-乙氧基亚甲基, 2-乙氧基亚乙基, 2 -丙氧基亚乙基, 丙基, 异丙基, 丁基, 异丁基, 仲丁基或叔丁 基, 其中更优选甲基, 乙基, 2-氨基乙基, 2-甲氧基乙基, 甲氧 基亚甲基, 2-乙氧基亚甲基或丙基; 或者 R4为取代或未取代的芳 基, 其中芳基是指含 6-20个碳原子, 优选 6-16个碳原子, 更优 选 6-10个碳原子的芳环结构,此芳基无取代基或具有至少一个取 代基,包括苯基, C1-4烷基苯基 (如 2-甲基苯基,或 3-乙基苯基), 卤代苯基 (如 2-氟苯基, 2-氯苯基, 4-氯苯基, 2-溴苯基或 2 -碘 苯基), 硝基苯基 (如 2-硝基苯基或 4-硝基苯基), C1-4烷氧基苯 基 (如 4-甲氧基苯基,或 4-乙氧基苯基), C1-4烷硫基苯基 (如 4- 甲硫基苯基, 或 4-乙硫基苯基), 萘基, 菲基, 蒽基和芘基, 其 中, 优选无取代的苯基, 甲氧基苯基, 卤代苯基, 和硝基苯基; 或者 R4为取代或未取代的芳烷基, 其中芳烷基是含 1-4个碳 原子的烷基, 其至少被一个(1-3个, 优选 1个)上述芳基所取代, 包括苄基, 甲基苄基, 乙基苄基, 甲氧基苄基, 乙氧基苄基, 氟 代苄基, 氯代苄基, 溴代苄基, 氯代萘甲基, 茚甲基, 菲甲基, 蒽甲基, 二苯基甲基, 三苯基甲基, 1-苯乙基, 2-苯乙基, 1, 1- 二苯基乙基, 2, 2, 2-三苯基乙基, 3, 3, 3-三苯基丙基; 1 -萘乙基, 其中, 优选苄基和苯乙基; R 4 is absent or is selected from a hydrogen atom, a C1-6 alkyl group, a C1-6 alkoxy group, a C1-6 alkylamino group, a halogen atom, and a C1-substituted by an amino group or a C1-6 alkoxy group or a halogen atom. 6 alkyl, preferably methyl, ethyl, 2-aminoethyl, methoxymethylene, 2-methoxyethylidene, 3-methoxypropylene, 2-ethoxymethylene , 2-ethoxyethylene, 2-propoxyethylene, propyl, isopropyl, butyl, isobutyl, sec-butyl or tert-butyl, more preferably methyl, ethyl, 2-aminoethyl, 2-methoxyethyl, methoxymethylene, 2-ethoxymethylene or propyl; or R 4 is a substituted or unsubstituted aryl group, wherein aryl means An aromatic ring structure having 6 to 20 carbon atoms, preferably 6 to 16 carbon atoms, more preferably 6 to 10 carbon atoms, the aryl group having no substituent or having at least one substituent including a phenyl group, a C1-4 alkane Phenylphenyl (such as 2-methylphenyl, or 3-ethylphenyl), halophenyl (such as 2-fluorophenyl, 2-chlorophenyl, 4-chlorophenyl, 2-bromophenyl) Or 2-iodophenyl), nitrophenyl (such as 2-nitrophenyl or 4-nitrophenyl), C1-4 alkoxy Phenylphenyl (such as 4-methoxyphenyl, or 4-ethoxyphenyl), C1-4 alkylthiophenyl (such as 4-methylthiophenyl, or 4-ethylthiophenyl) , naphthyl, phenanthryl, fluorenyl and fluorenyl, wherein, preferably, unsubstituted phenyl, methoxyphenyl, halophenyl, and nitrophenyl; or R 4 is substituted or unsubstituted aralkyl a arylalkyl group, which is an alkyl group having 1 to 4 carbon atoms, which is substituted with at least one (1-3, preferably 1) of the above aryl groups, including benzyl, methylbenzyl, ethylbenzyl , methoxybenzyl, ethoxybenzyl, fluorobenzyl, chlorobenzyl, bromobenzyl, chloronaphthylmethyl, fluorenylmethyl, phenanthrenyl, fluorenylmethyl, diphenyl Methyl, triphenylmethyl, 1-phenylethyl, 2-phenylethyl, 1, 1-diphenylethyl, 2, 2, 2-triphenylethyl, 3, 3, 3-three Phenylpropyl; 1-naphthylethyl, wherein benzyl and phenethyl are preferred;
Y 选自氧原子, 硫原子, NH2, NH, 氢原子, 氟原子和 C1-6 亚烷基, 如亚甲基, 亚乙基, 亚丙基, 四亚甲基, 或戊亚甲基; 其中当 Y为 H, NH2或 F时, R3不存在; 优选亚甲基, 氢原子或氟 原子; Y is selected from the group consisting of an oxygen atom, a sulfur atom, NH 2 , NH, a hydrogen atom, a fluorine atom and a C1-6 An alkylene group, such as a methylene group, an ethylene group, a propylene group, a tetramethylene group, or a pentamethylene group; wherein when Y is H, NH 2 or F, R 3 is absent; a methylene group is preferred. a hydrogen atom or a fluorine atom;
1¾和 m2表示含碱基 B4和 B1- B2- B3- B5的结构单元的个数, 各自 独立地为 1-15 , ii 优选 1-10, 更优选 1-6 , 最优选 1-4 , 甚至最 优选 1或 2; m2优选 1-10。 13⁄4 and m 2 represent the number of structural units containing the bases B 4 and B 1 -B 2 -B 3 - B 5 , each independently being 1-15, ii preferably 1-10, more preferably 1-6, most Preferably 1-4, even most preferably 1 or 2; m 2 is preferably 1-10.
B1 , B2 , B3, B4和 B5为核苷酸序列上的碱基, 各自独立地选自 A, G, C, T, mC, mG和非天然碱基及其组合; B 1 , B 2 , B 3 , B 4 and B 5 are bases on a nucleotide sequence, each independently selected from the group consisting of A, G, C, T, mC, mG and unnatural bases, and combinations thereof;
X1为不存在, 或者选自 C1- 6亚烷基, 如亚甲基, 亚乙基, 亚 丙基, 亚丁基, 亚戊基, 其中, 优选亚甲基, 亚乙基, 亚丙基; C2-6亚烯基, 如(E) -乙烯基, (Z) -乙烯基, (E) -丙烯基, (Z) -丙 烯基, (E) -丁烯基, (Z)丁烯基, (E) -戊烯基, (Z) -戊烯基, (E) - 己烯基, (Z) -己烯基, 其中, 优选(E) -丙烯基, (Z) -丙烯基; 和 C2-6亚炔基, 如丙炔基, 丁炔基, 戊炔基, 己炔基, 其中优选丙 炔基或丁炔基; 其中所述 C1- 6亚烷基, C2- 6亚烯基和 C2- 6亚炔 基中的一个或多个亚甲基任选地被氧原子, 硫原子, 酰胺基或酯 基替代; X 1 is absent or is selected from a C1-6 alkylene group such as a methylene group, an ethylene group, a propylene group, a butylene group, a pentylene group, wherein a methylene group, an ethylene group, a propylene group is preferred. C2-6 alkenylene group, such as (E)-vinyl group, (Z)-vinyl group, (E)-propenyl group, (Z)-propenyl group, (E)-butenyl group, (Z) butene (E)-pentenyl, (Z)-pentenyl, (E)-hexenyl, (Z)-hexenyl, wherein (E)-propenyl, (Z)-propenyl And a C2-6 alkynylene group, such as propynyl, butynyl, pentynyl, hexynyl, wherein a propynyl or butynyl group is preferred; wherein the C1-6 alkylene group, C2-4 One or more methylene groups in the alkenyl group and the C 2 - 6 alkynylene group are optionally replaced by an oxygen atom, a sulfur atom, an amide group or an ester group;
X2为不存在, 或者选自氧原子、 CH2、 NH和硫原子; X 2 is absent or is selected from an oxygen atom, CH 2 , NH and a sulfur atom;
或者优选 X1和 X2可以一起形成亚甲氧基, 亚乙氧基, 亚丙氧 基, 1-丙炔氧基, 3-亚丙氧基或 1-丙烯氧基; Or preferably X 1 and X 2 may together form a methyleneoxy group, an ethyleneoxy group, a propyleneoxy group, a 1-propynyloxy group, a 3-propyleneoxy group or a 1-propenyloxy group;
X3选自 CH和氮原子; X 3 is selected from the group consisting of CH and a nitrogen atom;
Z选自碳原子或硅原子; Z is selected from a carbon atom or a silicon atom;
R5 , R6和 R7相同或不同, 各自独立地选自 C1-4烷基, 例如甲 基, 乙基, 丙基, 异丙基, 丁基, 异丁基, 仲丁基, 叔丁基, 其 中优选叔丁基; 和未取代或被 R8单取代或多取代的 C6- 20芳基, 优选 C6- 16芳基, 进一步优选 C6- 10芳基; 此芳基无取代基或具 有至少一个取代基; 无取代基的芳基如苯基, 1-萘基, 2-萘基, 4-菲基, 9-蒽基, 2-蒽基, 芘基, 其中优选的芳基为苯基和萘基, 更优选苯基; 芳基上有 1-5个取代基 R8, 优选 1-3个, 更优选 1 个或 2个; R 5 , R 6 and R 7 are the same or different and are each independently selected from C 1-4 alkyl, such as methyl, ethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl, tert-butyl a group, wherein a tert-butyl group is preferred; and a C6-20 aryl group which is unsubstituted or monosubstituted or polysubstituted by R 8 , preferably a C 6-16 aryl group, further preferably a C 6-10 aryl group; the aryl group has no substituent or There are at least one substituent; an unsubstituted aryl group such as phenyl, 1-naphthyl, 2-naphthyl, 4-phenanthryl, 9-fluorenyl, 2-indenyl, fluorenyl, wherein the preferred aryl group is a phenyl group and a naphthyl group, more preferably a phenyl group; the aryl group has 1 to 5 substituents R 8 , preferably 1 to 3, more preferably 1 or 2;
R8定义如下: C1-4烷基, C1-4卤代烷基, 卤素原子, 硝基, 氛基, 氨基, C1- 4烷氧基, C1- 4烷硫基, 芳基, 芳氧基, 芳烷基 或芳烷氧基; 其中芳基是指含 6-20个碳原子的芳环结构; 芳烷基 是含 1-4个碳原子的烷基, 其至少被一个上述芳基所取代; 芳氧 基是指芳基 -0-,其中芳基定义如上;芳烷氧基是指芳烷基 -0-,其 中芳烷基定义如上; R 8 is as defined below: C1-4 alkyl, C1-4 haloalkyl, halogen atom, nitro, aryl, amino, C1-4 alkoxy, C1-4 alkylthio, aryl, aryloxy, aryl An alkyl group or an aralkyloxy group; wherein the aryl group means an aromatic ring structure having 6 to 20 carbon atoms; the aralkyl group is an alkyl group having 1 to 4 carbon atoms, which is substituted with at least one of the above aryl groups; Aryloxy means aryl-0-, wherein aryl is as defined above; aralkyloxy means aralkyl-0-, wherein aralkyl is as defined above;
其中对于 R8定义举例说明如下: An example of the definition of R 8 is as follows:
C1-4烷基, 如甲基, 乙基, 丙基, 异丙基, 丁基, 异丁基, 仲丁基, 和叔丁基, 优选甲基和叔丁基; C1-4 alkyl, such as methyl, ethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl, and tert-butyl, preferably methyl and tert-butyl;
C1-4卤代烷基: 氟代甲基, 三氟甲基, 三氯甲基, 2, 2, 2 -三 氟乙基, 2, 2, 2-三氯乙基, 2-氟乙基, 2-氯乙基, 2-碘乙基, 3- 氯丙基, 4-氟丁基等, 优选三氟甲基和 2, 2, 2-三氯乙基; C1-4 haloalkyl: fluoromethyl, trifluoromethyl, trichloromethyl, 2, 2, 2-trifluoroethyl, 2, 2, 2-trichloroethyl, 2-fluoroethyl, 2 -chloroethyl, 2-iodoethyl, 3-chloropropyl, 4-fluorobutyl, etc., preferably trifluoromethyl and 2, 2, 2-trichloroethyl;
卤素原子: 如氟, 氯, 溴, 碘原子, 优选氟和氯原子; 硝基, 氰基和氨基; Halogen atom: such as fluorine, chlorine, bromine, iodine atom, preferably fluorine and chlorine atom; nitro group, cyano group and amino group;
C1-4烷氧基: 如甲氧基, 乙氧基, 丙氧基, 异丙氧基, 丁氧 基, 异丁氧基, 仲丁氧基, 和叔丁氧基, 优选甲氧基和叔丁氧基; C1-4 alkoxy: such as methoxy, ethoxy, propoxy, isopropoxy, butoxy, isobutoxy, sec-butoxy, and tert-butoxy, preferably methoxy and Tert-butoxy;
C1-4烷硫基: 甲硫基, 乙硫基, 丙硫基, 异丙硫基, 丁硫基, 异丁硫基, 仲丁硫基, 和叔丁硫基, 优选甲硫基和叔丁硫基; 芳基: 如苯基或萘基; C1-4 alkylthio: methylthio, ethylthio, propylthio, isopropylthio, butylthio, isobutylthio, sec-butylthio, and tert-butylthio, preferably methylthio and tert-butyl Butylthio; aryl: such as phenyl or naphthyl;
芳氧基: 如苯氧基或萘氧基; Aryloxy: such as phenoxy or naphthyloxy;
芳烷基: 如苄基或苯乙基; Aralkyl group: such as benzyl or phenethyl;
芳烷氧基: 如苄氧基或苯乙氧基; 或者 R5, R6和 R7相同或不同, 各自独立地选自蒽醌基, 无取 代基或含取代基,取代基同 R8;取代基的数量为 1-5个,优选 1-3 个, 更进一步优选 1个; 如 9, 10-蒽醌- 1-, 9, 10-蒽醌- 2-, 4 -甲 基- 9, 10-蒽醌- 1-, 5-甲氧基 - 9, 10-蒽醌- 1- , 7-氯- 9, 10-蒽醌 -1- , 8-氟- 9, 10-蒽醌- 2- , 6-乙基- 9, 10-蒽醌- 2- , 8-乙氧基 - 9, 10-蒽醌- 2-, 9, 10-蒽醌- 1-, 6-羟基- 9, 10-蒽醌- 1-, 其中, 优选无取代的蒽醌基; Aralkyloxy: such as benzyloxy or phenethyloxy; Or R 5 , R 6 and R 7 are the same or different and are each independently selected from the group consisting of fluorenyl, unsubstituted or substituted, and the substituent is the same as R 8 ; the number of substituents is 1-5, preferably 1-3 Further, preferably one; such as 9, 10-蒽醌- 1-, 9, 10-蒽醌- 2-, 4-methyl- 9, 10-蒽醌- 1-, 5-methoxy- 9, 10-蒽醌- 1- , 7-chloro- 9, 10-蒽醌-1-, 8-fluoro- 9, 10-蒽醌- 2- , 6-ethyl- 9, 10-蒽醌- 2-, 8-ethoxy-, 9, 10-蒽醌- 2-, 9, 10-蒽醌- 1-, 6-hydroxy- 9, 10-蒽醌- 1-, wherein, preferably, unsubstituted anthracene醌基;
或者 R5, R6和 R7和 Z—起选自芴基, P占吨基, 优选 9-芴基, 9 -咕吨基; Or R 5 , R 6 and R 7 and Z are selected from the group consisting of fluorenyl, P ton, preferably 9-fluorenyl, 9-fluorene;
在核苷单体 1- 3中与 S' -O或 X2连接的 R5, R6, R7和 Z组成的In the nucleoside monomer 1-3, R 5 , R 6 , R 7 and Z are bonded to S'-O or X 2
R7 R 7
R、|— R, |—
基团 R Z_相同或不同, 可以同时存在, 或者单独存在, 此时其 当核苷单体 1-3 中 5'位置不存在基团The groups R Z_ are the same or different and may exist simultaneously or separately, at this time When the nucleoside monomer 1-3 has no group at the 5' position
R7 R 7
R Z—时, 核苷单体 1-3以 5' -羟基与所述核苷酸序列连接。 在通式(I)中, B1, B2, B3, B4, B5所产生的序列组成中, 含一 个至多个 GGG或 GGGG片段,则形成四螺旋结构; 如果序列的碱基 组成为全嘌呤或全嘧啶组成, 则形成三螺旋结构; 如果是天然碱 基的随机组合, 则形成双螺旋结构。 并且, 在三螺旋和双螺旋结 构中的互补核酸序列可以是未修饰的, 也可以是本发明所定义的 修饰序列。 When R Z —, nucleoside monomers 1-3 are linked to the nucleotide sequence by a 5'-hydroxyl group. In the general formula (I), the sequence composition produced by B 1 , B 2 , B 3 , B 4 , B 5 contains one or more GGG or GGGG fragments, forming a four-helix structure; A composition consisting of a full purine or a perpyrimidine forms a triple helix structure; if it is a random combination of natural bases, a double helix structure is formed. Furthermore, the complementary nucleic acid sequence in the triple helix and the double helix structure may be unmodified or may be a modified sequence as defined in the present invention.
非天然碱基包括针对 A, G, C, T等四个碱基的修饰而产生的 结构, 以提高螺旋结构的热稳定性、 化学稳定性和酶稳定性的修 饰为主: 针对 Α和 G的五员环部分的修饰, 如通式 2和 3中的碱 基部分; 在 T的 5位引入取代基, 如通式 1的碱基部分等; 这些 修饰碱基上的取代基还可包括氯, 溴, 碘等卤素原子; 在通式(I)中, B1, B2, B3, B4, B5中含有连续的 3 个 G, 如 d (TGGGAG) 4 , d (GGGTG) " d (TGGGA) 4 , d (TGGGA) 4 , d (TGGGA) 4 , d (TGGGA) 4, d (TGGGA) 4, d (TGGGA) 4等, 在钾离子的存在下都形成 稳定的四螺旋结构; 当 B1至 B5为随机分布的碱基组成时, 如 d (TCTGCATG)和 d (CATGCAGA) , 则形成双螺旋结构; 在这两类结构 中引入本发明的修饰策略, 将 5' -端以修饰单体 1-6代替, 获得 具有抑制 HIV- 1进入的活性。 在本发明通式(I)的一个实施方案中, !^和 m2各自独立地为 1-10, 优选 1-6,更优选 1-4。 ii 优选 1-4 , m2优选 1-10。 Non-natural bases include structures resulting from the modification of four bases such as A, G, C, T, etc., to improve the thermal stability, chemical stability and enzyme stability of the helical structure: Modification of the five-membered ring moiety, such as the base moiety in Formulas 2 and 3; introduction of a substituent at the 5-position of T, such as the base moiety of Formula 1, etc.; The substituent on the modified base may further include a halogen atom such as chlorine, bromine or iodine; in the formula (I), B 1 , B 2 , B 3 , B 4 and B 5 contain three consecutive G groups, such as d (TGGGAG) 4 , d (GGGTG) " d (TGGGA) 4 , d (TGGGA) 4 , d (TGGGA) 4 , d (TGGGA ) 4 , d (TGGGA ) 4 , d (TGGGA ) 4 , etc . A stable four-helical structure is formed in the presence of ions; when B 1 to B 5 are randomly distributed base compositions, such as d (TCTGCATG) and d (CATGCAGA), a double helix structure is formed; in these two types of structures The modification strategy of the present invention is introduced, and the 5'-end is substituted with the modified monomer 1-6 to obtain an activity for inhibiting the entry of HIV-1. In one embodiment of the general formula (I) of the present invention, !^ and m 2 is independently 1-10, preferably 1-6, more preferably 1-4. ii preferably 1-4, m 2 preferably 1 to 10.
在本发明通式(I)的一个实施方案中, R1连接在 5' -端, 独立 地选自单体结构 1-6; R2连接在 3' -端, 独立地选自: 氢原子, 甲 基磷酰基, 2-氯苯基磷酰基, 甲基硫代磷酰基, 2-羟乙基磷酰基 和 2-羟基- 3-乙酰胺基-丙基。 In one embodiment of the general formula (I) according to the invention, R 1 is attached at the 5'-terminus, independently selected from the monomer structure 1-6; R 2 is attached at the 3'-position, independently selected from: a hydrogen atom , methylphosphoryl, 2-chlorophenylphosphoryl, methylthiophosphoryl, 2-hydroxyethylphosphoryl and 2-hydroxy-3-acetamido-propyl.
在本发明通式(I)的一个实施方案中, X1为 C1-6亚烷基, C1-6 亚烯基或 C1- 6亚炔基, 其中所述 C1- 6亚烷基中的一个或多个亚 甲基任选地被氧原子替代; X2为氧原子, CH2, NH 或硫原子; X1 和 X2—起形成亚甲氧基, 亚乙氧基, 亚丙氧基, 亚- 1-丙炔氧基, 或亚- 1-丙烯氧基; X3为 CH或氮原子。 In one embodiment of the formula (I) according to the invention, X 1 is C1-6 alkylene, C1-6 alkenylene or C1-6 alkynylene, wherein one of said C1-6 alkylene groups Or a plurality of methylene groups are optionally replaced by oxygen atoms; X 2 is an oxygen atom, CH 2 , NH or a sulfur atom; X 1 and X 2 together form a methyleneoxy group, an ethyleneoxy group, a propyleneoxy group , i- 1-propynyloxy, or i- 1-propenyloxy; X 3 is CH or a nitrogen atom.
在本发明通式(I)的一个实施方案中, X和 R3—起形成 0H, SH, 甲氧基, 乙氧基, 丙氧基或苄氧基。 In one embodiment of the formula (I) according to the invention, X and R 3 together form a 0H, SH, methoxy, ethoxy, propoxy or benzyloxy group.
在本发明通式(I)的一个实施方案中, Y和 R4—起形成羟基, 氟原子, 氢原子, 甲氧基, 乙氧基, 丙氧基, 甲氧基亚甲氧基, 甲氧基亚乙氧基, 乙氧基亚甲氧基, 甲氨基或乙氨基。 本发明的第二方面涉及衍生自单体 1-6 的用于通式(I)合成 的亚磷酰胺单体 7-12及其合成方法。 In one embodiment of the invention of formula (I), Y is and R 4 - together form a hydroxyl group, a fluorine atom, a hydrogen atom, a methoxy group, ethoxy, propoxy, methoxymethylene, methoxy, methyl Oxyethyleneoxy, ethoxymethyleneoxy, methylamino or ethylamino. A second aspect of the invention relates to a phosphoramidite monomer 7-12 for the synthesis of formula (I) derived from monomers 1-6 and a process for its synthesis.
10 12 亚磷酰胺单体 7-12 中, X1, X2, X3, Z, R5, R6, R7的定义与 通式(I)中相同; 10 12 phosphoramidite monomers 7-12, X 1 , X 2 , X 3 , Z, R 5 , R 6 , R 7 have the same definitions as in the formula (I);
R9为腺嘌呤及其类似物的 6-位氨基的保护基,包括苯甲酰基, 二正丁胺基甲基, 二甲胺基甲基, 乙酰基, 丙酰基, 丁酰基, 甲 酰基, 其中, 优选苯甲酰基, 二正丁胺基甲基, 二甲胺基甲基, 乙酰基; R 9 is a protecting group for the 6-position amino group of adenine and its analogs, including benzoyl, di-n-butylaminomethyl, dimethylaminomethyl, acetyl, propionyl, butyryl, formyl, Among them, a benzoyl group, a di-n-butylaminomethyl group, a dimethylaminomethyl group, an acetyl group;
R1"为鸟嘌呤及其类似物的 2-氨基的保护基, 包括异丁酰基, 二正丁胺基甲基, 二甲胺基甲基, 乙酰基, 丙酰基, 丁酰基, 苯 甲酰基, 甲酰基, 其中, 优选异丁酰基, 二正丁胺基甲基, 二甲 胺基甲基, 甲酰基, 乙酰基。 本发明的第三方面涉及核苷单体 1-6的合成, 以 2'-位为氢 原子取代的结构为例。 R 1 " is a 2-amino protecting group for guanine and its analogs, including isobutyryl, di-n-butylaminomethyl, dimethylaminomethyl, acetyl, propionyl, butanoyl, benzoyl , formyl, wherein, isobutyryl, di-n-butylaminomethyl, dimethylaminomethyl, formyl, acetyl is preferred. A third aspect of the invention relates to the synthesis of nucleoside monomers 1-6, exemplified by a structure in which the 2'-position is substituted with a hydrogen atom.
化合物 1的合成路线如反应路线 4和反应路线 5所示, 当 X1 为亚甲基, 亚乙基, 亚丙基, X2为氧原子时, 按反应路线 4所示 的合成路线。化合物 la的 5位和 5'-位的羟基与含芳香基团的卤 化物反应, 如三苯甲基氯 (Trt- Cl), 4, 4'-二甲氧基-三苯甲基氯 (DMT-C1) , 叔丁基二苯基氯硅烷(TBDPS- C1), 得到重要中间体 1, 1在 5位和 5'-位的 R5R6R7Z基团相同; 如果 R5R6R7Z基团在 5位和 5' -位不同,则以化合物 lb为原料,在它的 5位上已经引入 R5R6R7Z 基团, 经糖苷化反应和糖环的脱保护基(Tol, 对甲基苯甲酰基), 得到重要中间体 lc, 在它的 5'-位引入所需 R5R6R7Z基团, 得到 5 位和 5'-位含不同脂溶性取代基的单体 1。核苷单体 1进一步转化 为亚磷酰胺单体 7, 用于 DNA固相合成。 The synthetic route of Compound 1 is shown in Reaction Scheme 4 and Reaction Scheme 5. When X 1 is a methylene group, an ethylene group, a propylene group, and X 2 is an oxygen atom, the synthetic route shown in Reaction Scheme 4 is employed. The hydroxyl group at the 5 and 5' positions of the compound la is reacted with a halide containing an aromatic group such as trityl chloride (Trt-Cl), 4,4'-dimethoxy-trityl chloride ( DMT-C1), tert-butyldiphenylchlorosilane (TBDPS-C1), which gives the important intermediate 1, 1 at the 5 and 5'-positions of the R 5 R 6 R 7 Z group; if R 5 R 6 R 7 Z group is different at the 5 and 5' positions, and the compound lb is used as a raw material, and the R 5 R 6 R 7 Z group has been introduced at the 5 position thereof, and the glycosidation reaction and the sugar ring are removed. The protecting group (Tol, p-methylbenzoyl) gives the important intermediate lc, which introduces the desired R 5 R 6 R 7 Z group at its 5'-position, giving the 5 and 5'-positions with different lipids. Monomer 1 of a soluble substituent. The nucleoside monomer 1 is further converted to a phosphoramidite monomer 7 for DNA solid phase synthesis.
1c 1c
反应路线 4 化合物 1及其亚磷酰胺单体 7的合成路线 当 X1为其它基团, X2为氧或碳原子, 以 5-碘脱氧尿苷为起始 物, 以偶联反应引入烯键或块键连接臂, 而且这两种连接臂可以 氢化为亚烷基连接臂, 然后在 5' -位引入所需基团, 如反应路线 5 Reaction Scheme 4 Synthesis route of compound 1 and its phosphoramidite monomer 7 When X 1 is another group, X 2 is oxygen or a carbon atom, starting with 5-iodooxyuridine a coupling reaction to introduce an olefinic bond or a block bond to the arm, and the two link arms can be hydrogenated to an alkylene linker, and then the desired group is introduced at the 5'-position, as in Scheme 5.
1 b 1 b
反应路线 5 化合物 1及其重要中间体 lb的合成路线 化合物 2及其亚磷酰胺单体 8的合成路线如反应路线 6所示。 以化合物 2a为起始物, 一般以偶联反应引入 7位的取代基 R5R6R7Z基团, X1以烯基, 炔基引入, 并且可以将烯基和炔基经氢 化反应转化为亚烷基, 得到关键中间体 2b, 在 2b的 5'位引入相 同或不同的 R¾7Z基团, 得到化合物 2, 在 2的 6-氨基引入保护 基 R9, 如苯甲酰基, 乙酰基, 二正丁胺基甲基, 或二甲胺基甲基, 得到关键中间体 2c, 进一步转化为它的亚磷酰胺单体 8。 Scheme 5 Synthesis of Compound 1 and Its Important Intermediate lb The synthetic route of Compound 2 and its phosphoramidite monomer 8 is shown in Reaction Scheme 6. Starting from compound 2a, the coupling reaction generally introduced into the 7-position substituent group R 5 R 6 R 7 Z group, X 1 an alkenyl group, an alkynyl group is introduced, and may be alkenyl and alkynyl groups via hydrogenation reaction Conversion to an alkylene group gives the key intermediate 2b, introducing the same or different R3⁄4 7 Z group at the 5' position of 2b to give compound 2, and introducing a protecting group R 9 such as a benzoyl group at the 6-amino group of 2 Acetyl, di-n-butylaminomethyl, or dimethylaminomethyl, gives the key intermediate 2c, which is further converted to its phosphoramidite monomer 8.
化合物 3及其亚磷酰胺单体 9的合成路线如反应路线 7所示。 以化合物 3a为起始物, 一般以偶联反应引入 7位的取代基 R5R6R7Z基团, X1是含烯基, 块基的基团, 并且可以氢化反应将烯 基和炔基转化为亚烷基, 得到关键中间体 3b, 在 3b的 5'位引入 相同或不同的 R5R6R7Z基团, 得到化合物 3, 在 3的 2-氨基引入保 护基 ΙΓ, 如异丁酰基, 乙酰基, 二正丁胺基甲基, 二甲胺基甲基, 甲酰基,得到关键中间体 3c,进一步转化为它的亚磷酰胺单体 9。 The synthetic route of Compound 3 and its phosphoramidite monomer 9 is shown in Reaction Scheme 7. Starting from compound 3a, a substituent R 5 R 6 R 7 Z group at the 7 position is generally introduced by a coupling reaction, X 1 is an alkenyl group-containing group, and a hydrogen group can be hydrogenated to react an alkenyl group and Conversion of an alkynyl group to an alkylene group gives the key intermediate 3b, introducing the same or different R 5 R 6 R 7 Z group at the 5' position of 3b to give compound 3, and introducing a protecting group at the 2-amino group of 3, Such as isobutyryl, acetyl, di-n-butylaminomethyl, dimethylaminomethyl, formyl, gives the key intermediate 3c, which is further converted to its phosphoramidite monomer 9.
NCCH2CH20 N(iPr)2 NCCH 2 CH 2 0 N(iPr) 2
9 9
反应路线 7 化合物 3及其亚磷酰胺单体 9的合成路线 化合物 4及其亚磷酰胺单体 10的合成路线如反应路线 8所 示。 在脱氧胸苷的 5' -位引入 R5R6R7Z基团得到化合物 4, 进一步 转化为亚磷酰胺单体 10。Scheme 7 Synthesis Route of Compound 3 and Its Phosphoramide Monomer 9 The synthetic route of Compound 4 and its phosphoramidite monomer 10 is shown in Reaction Scheme 8. Introduction of the R 5 R 6 R 7 Z group at the 5'-position of deoxythymidine gives compound 4, which is further converted to phosphoramidite monomer 10.
反应路线 8 化合物 4及其亚磷酰胺 10的合成路线 化合物 5的合成如反应路线 9所示, 以脱氧腺苷为起始物, 在它的 5' -位引入 R5R6R7Z基团而得到, 随后保护其 6-氨基, 得到 关键中间体 5a, 或者, 先保护脱氧腺苷的 6-氨基, 得到中间体 5b, 再引入 5' -位的 R5R6R7Z基团, 得到关键中间体 5a, 5a进一步 转化为亚磷酰胺单体 11。 Scheme 4 and Scheme 8 Compound phosphoramidite 10 Synthesis of Compound 5 as shown in Scheme 9, as a starting material in deoxyadenosine, at its 5 '- introduction of R 5 R 6 R 7 Z bit group Obtained, then protected its 6-amino group, to obtain the key intermediate 5a, or, first, protect the 6-amino group of deoxyadenosine to obtain an intermediate 5b, the introduction of the R 5 R 6 R 7 Z group at the 5'-position gives the key intermediate 5a, 5a which is further converted to the phosphoramidite monomer 11.
5b 5b
反应路线 9 化合物 5及其亚磷酰胺单体 11的合成路线 化合物 6的合成如反应路线 10所示, 以脱氧鸟苷为起始物, 在它的 5' -位引入 R5R6R7Z基团而得到, 随后保护其 2-氨基, 得到 关键中间体 6a , 或者, 先保护脱氧鸟苷的 2-氨基, 得到中间体 6b, 再引入 5' -位的 R5R6R7Z基团, 得到关键中间体 6a, 6a进一步 转化为亚磷酰胺单体 12。 Scheme 9 Synthesis route of compound 5 and its phosphoramidite monomer 11 The synthesis of compound 6 is shown in Reaction Scheme 10, starting with deoxyguanosine and introducing R 5 R 6 R 7 at its 5'-position. Obtained from the Z group, followed by protecting its 2-amino group to give the key intermediate 6a, or, first, protecting the 2-amino group of deoxyguanosine to give the intermediate 6b, and introducing the R 5 R 6 R 7 Z at the 5'-position. The group, the key intermediates 6a, 6a are further converted to the phosphoramidite monomer 12.
反应路线 10 化合物 6及其亚磷酰胺氮单体 12的合成路线 本发明的第四方面涉及含单体 1-6的核酸序列的合成, 利用Scheme 10 Synthesis route of compound 6 and its phosphoramidite nitrogen monomer 12 A fourth aspect of the invention relates to the synthesis, utilization of a nucleic acid sequence comprising monomers 1-6
DM 固相合成的亚磷酰胺法合成, 将以下核苷单体引入核苷酸序 列的 5' -端或其它位置, 部分序列如表 1所示, 所含的核苷单体 结构如下所示。 DM solid phase synthesis by phosphoramidite synthesis, the following nucleoside monomers were introduced into the 5'-end or other positions of the nucleotide sequence, the partial sequence is shown in Table 1, and the nucleoside monomer structure contained is as follows .
例如,采用通用型 CPG树脂固相合成,使用亚磷酰胺单体 14e, 脱保护条件为浓氨水 55 X, 2h。 最终得到结构为 14f。 For example, a solid phase synthesis using a general-purpose CPG resin, a phosphoramidite monomer 14e, and a deprotection condition of concentrated ammonia 55 X, 2 h are used. The resulting structure is 14f.
用于修饰核酸结构的核苷单体结构 修饰的脱氧核苷酸序列 Nucleoside monomer structure for modifying nucleic acid structure Modified deoxynucleotide sequence
本发明的第五个方面涉及修饰核酸的高级结构的光谱分析, 将各个修饰核酸序列溶于緩冲液中, 利用圆二色傳仪测定它们的 特征峰形, 确定四螺旋和双螺旋结构的形成。 A fifth aspect of the invention relates to the spectral analysis of the high-order structure of the modified nucleic acid, the respective modified nucleic acid sequences are dissolved in a buffer, and their characteristic peak shapes are determined by a circular dichroism, and the four-helix and double-helix structures are determined. form.
本发明的第六个方面涉及修饰核酸的抗 HIV-1融合的活性, 利用细胞融合模型检测抑制活性。 A sixth aspect of the invention relates to the activity of modifying the anti-HIV-1 fusion of a nucleic acid, and detecting the inhibitory activity using a cell fusion model.
本发明第七个方面涉及式(I)所示的化合物,采用其它核酸药 物(如 s iRM, 反义核酸, 适配子, 核酶等)的转运策略: 与各种 阳离子聚合物如阳离子脂质体一起形成的复合物; 与 PEG、 胆固 醇、 靶细胞表面受体的配体等结合, 以改善这类核酸药物的转运 效率。 A seventh aspect of the invention relates to a compound of formula (I), a transport strategy using other nucleic acid drugs (such as s iRM, antisense nucleic acid, aptamer, ribozyme, etc.): with various cationic polymers such as cationic lipids A complex formed by plastids; combined with PEG, cholesterol, ligands of target cell surface receptors, etc., to improve the transport efficiency of such nucleic acid drugs.
本发明第八个方面涉及一种药物组合物, 所述药物组合物包 含通式(I)的核酸或其药学上可接受的盐或溶剂化物与药学上可 接受的载体或赋形。 在一个实施方案中, 所述组合物还包括其他 治疗病毒感染的药物。在一个实施方案中,所述病毒特别是 HIV-l 病毒。 An eighth aspect of the invention relates to a pharmaceutical composition comprising a nucleic acid of the formula (I) or a pharmaceutically acceptable salt or solvate thereof, and a pharmaceutically acceptable carrier or excipient. In one embodiment, the composition further includes other A drug that treats viral infections. In one embodiment, the virus is in particular an HIV-1 virus.
本发明的核酸结构既可以其本身也可以其可药用盐的形式使 用。 通式(I)核酸结构的可药用盐包括与药学上可接受的无机碱或 有机碱形成的常规盐。 合适的碱加成盐的例子包括与钠、 锂、 钾、 镁、 铝、 钙、 锌、 三甲胺、 三乙胺、 三丙胺、 三丁胺、 Ν, Ν' -二苄 基乙二胺、 氯代普鲁卡因、 胆碱、 二乙醇胺、 乙二胺、 Ν-甲基葡糖 胺和普鲁卡因等形成的盐。 本文中涉及到本发明的核酸结构时, 包 括通式(I)核酸结构及其可药用盐。 The nucleic acid structure of the present invention can be used either in itself or in the form of a pharmaceutically acceptable salt thereof. The pharmaceutically acceptable salt of the nucleic acid structure of the formula (I) includes a conventional salt formed with a pharmaceutically acceptable inorganic or organic base. Examples of suitable base addition salts include sodium, lithium, potassium, magnesium, aluminum, calcium, zinc, trimethylamine, triethylamine, tripropylamine, tributylamine, hydrazine, Ν'-dibenzylethylenediamine, a salt formed from chloroprocaine, choline, diethanolamine, ethylenediamine, guanidine-methylglucamine, and procaine. When referring to the nucleic acid structure of the present invention, the nucleic acid structure of the formula (I) and pharmaceutically acceptable salts thereof are included.
通式(I)的核酸结构还可以形成溶剂合物, 例如水合物、 醇合 物等的形式。 一般来说, 对于本发明的目的, 与药学上可接受的 溶剂如水、 乙醇等的溶剂合物形式与非溶剂合物形式相当。 The nucleic acid structure of the formula (I) may also form a solvate such as a hydrate, an alcohol or the like. In general, for the purposes of the present invention, solvated forms with pharmaceutically acceptable solvents such as water, ethanol and the like are equivalent to the unsolvated forms.
本文所用的药学上可接受的载体或赋形剂包括作为期望的具 体剂型适合的任意和所有溶剂、 稀释剂或其他液体媒介物、 分散 或助悬助剂、 表面活性剂、 等渗剂、 增稠剂或乳化剂、 固体粘合 剂、 润滑剂等。 Remington' s Pharmaceut ical Sciences, 第 16 版, E. W. Mart in (Mack Publ i shing Co. , Eas ton, Pa. , 1980) 中公开了用于配制药学上可接受组合物的各种载体或赋形剂及其 制备的公知技术, 其全文引入本申请作为参考。 除与本发明化合 物不相容的任意常用载体介质外, 例如通过产生任意不期望生物 效应、 否则就是以有害方式与药学上可接受组合物的任意其他成 分发生相互作用, 本发明范围内关注其应用。 The pharmaceutically acceptable carrier or excipient as used herein includes any and all solvents, diluents or other liquid vehicles, dispersing or suspending aids, surfactants, isotonic agents, and the like, which are suitable as the particular dosage form desired. Thickeners or emulsifiers, solid binders, lubricants, etc. Various carriers or excipients for formulating pharmaceutically acceptable compositions are disclosed in Remington's Pharmaceutical Sciences, 16th Edition, EW Mart in (Mack Publ i shing Co., Eas ton, Pa., 1980). A well-known technique for its preparation is hereby incorporated by reference in its entirety. In addition to any conventional carrier medium that is incompatible with the compounds of the present invention, for example, by creating any undesirable biological effects, or otherwise interacting in a deleterious manner with any other component of the pharmaceutically acceptable composition, it is within the scope of the present invention application.
可以用作药学上可接受的载体的材料的一些实例包括但不限 于离子交换剂、 氧化铝、 硬脂酸铝、 卵磷脂、 血清蛋白例如人血 清白蛋白、 緩冲物质例如磷酸盐、 甘油、 山梨酸或山梨酸钾、 饱 和植物脂肪酸的偏甘油酯混合物、 水、 盐或电解质例如硫酸鱼精 蛋白、 磷酸氢二钠、 磷酸氢钾、 氯化钠、 锌盐、 胶体二氧化硅、 三硅酸镁、 聚乙烯吡咯烷酮、 聚丙烯酸酯、 蜡类、 聚乙烯-聚丙烯 -嵌段共聚物、 羊毛脂、 糖类例如乳糖、 葡萄糖和蔗糖; 淀粉例如 玉米淀粉和马铃薯淀粉;纤维素及其衍生物例如羧甲基纤维素钠、 乙基纤维素和醋酸纤维素; 西黄蓍胶粉; 麦芽; 明胶; 滑石粉; 赋形剂例如可可脂和栓剂蜡; 油例如花生油、 棉籽油; 红花油; 芝麻油; 橄榄油; 玉米油和大豆油; 二醇类例如丙二醇或聚乙二 醇; 酯类例如油酸乙酯和月桂酸乙酯; 琼脂; 緩冲剂例如氢氧化 镁和氢氧化铝; 藻酸; 无热原水; 等渗盐水; 林格液; 乙醇和磷 酸盐緩冲溶液; 和其他无毒性相容性润滑剂例如十二烷基硫酸钠 和硬脂酸镁; 根据制剂者的判断, 组合物中还可以存在着色剂、 释放剂、 包衣衣料、 甜味剂、 矫味剂和香料、 防腐剂和抗氧化剂。 Some examples of materials that can be used as pharmaceutically acceptable carriers include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins such as human serum albumin, buffer substances such as phosphate, glycerol, Sorbic acid or potassium sorbate, a mixture of partial glycerides of saturated plant fatty acids, water, salt or electrolytes such as fish oil Protein, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salt, colloidal silica, magnesium trisilicate, polyvinylpyrrolidone, polyacrylate, wax, polyethylene-polypropylene-block copolymer, Lanolin, sugars such as lactose, glucose and sucrose; starches such as corn starch and potato starch; cellulose and its derivatives such as sodium carboxymethylcellulose, ethylcellulose and cellulose acetate; scutellaria powder; malt Gelatin; talc; excipients such as cocoa butter and suppository wax; oils such as peanut oil, cottonseed oil; safflower oil; sesame oil; olive oil; corn oil and soybean oil; glycols such as propylene glycol or polyethylene glycol; Such as ethyl oleate and ethyl laurate; agar; buffers such as magnesium hydroxide and aluminum hydroxide; alginic acid; pyrogen-free water; isotonic saline; Ringer's solution; ethanol and phosphate buffer solution; Non-toxic compatible lubricants such as sodium lauryl sulfate and magnesium stearate; colorants, release agents, coatings, and the like may also be present in the composition, as judged by the formulator. Flavoring agents, flavoring and perfuming agents, preservatives and antioxidants.
本发明第九个方面涉及通式(I)的核酸结构或其药学上可接 受的盐或溶剂化物在制备治疗病毒感染的药物中的用途。 在一个 实施方案中, 所述病毒是 HIV- 1病毒。 A ninth aspect of the invention relates to the use of the nucleic acid structure of formula (I) or a pharmaceutically acceptable salt or solvate thereof for the manufacture of a medicament for the treatment of a viral infection. In one embodiment, the virus is HIV-1 virus.
本发明第十个方面涉及治疗病毒感染的方法, 所述方法包括 给予需要这种治疗的患者治疗有效量的通式(I)的核酸结构或其 药学上可接受的盐或溶剂化物。 在一个实施方案中, 所述病毒是 HIV-1病毒。 实施例 A tenth aspect of the invention relates to a method of treating a viral infection, the method comprising administering to a patient in need of such treatment a therapeutically effective amount of a nucleic acid structure of formula (I) or a pharmaceutically acceptable salt or solvate thereof. In one embodiment, the virus is an HIV-1 virus. Example
实施例 1. 合成核苷单体 16c和它的亚磷酰胺单体 16c-p Example 1. Synthesis of nucleoside monomer 16c and its phosphoramidite monomer 16c-p
NCH2CH2CO' 、N(i-Pr)2 NCH 2 CH 2 CO', N(i-Pr) 2
16c-p 16c-p
(i) TBDPS-CI, 咪唑,在 DMF中,在 r.t下; (i) TBDPS-CI, imidazole, in DMF, at r.t;
(ii) (Ν〇〇Η2〇Η2〇)[(μΡ02Ν]2Ρ, (i-Pr)2EtN四氮唑盐,在 CH2CI2中,在 r.t.下 反应路线 12 核苷单体 16c和它的亚磷酰胺单体 16c- p的合成路线 (ii) (Ν〇〇Η 2 〇Η 2 〇)[( μ Ρ0 2 Ν] 2 Ρ, (i-Pr) 2 EtN tetrazolium salt, in CH 2 CI 2 , reaction route 12 nucleus at rt Synthesis route of glycoside monomer 16c and its phosphoramidite monomer 16c-p
1- [ (2-去氧- β -D-呋喃核糖- 5- (叔丁基二苯基硅基) ] -5- (叔 丁基二苯基硅氧基-丙基) -1H, 3Η-嘧啶- 2, 4-二酮(16c) 1-[(2-Deoxy-β-D-ribofuranosyl-5-(tert-butyldiphenylsilyl)]-5-(tert-butyldiphenylsilyloxy-propyl)-1H, 3Η -pyrimidine-2,4-dione (16c)
按文献 24中的方法合成 5 (3-羟丙基) -脱氧尿苷。 向 5 (3 -羟 丙基) -脱氧尿苷(0.75 g)的 DMF(10 ml)溶液中, 加入咪唑(0.625 g, 9.2 mmol), 然后分批加入 TBDPS—Cl (2.07 g, 7.53 mmol) , 搅拌 5h, 加甲醇终止反应。 柱层析分离, 得白色泡沫状固体 0.1 g, 产率 37.6%。 Rf=0.3(DCM/MeOH=30: 1)。 ^ NMR (DMSO— ): δ 0.93, 0.98 (2 s, 18 H, 2 tBu), 1.54 (m, 2 H, CH2C 2CH2) , 2.02, 2.11 (2 m, 4H, C2,-2H, C^2CH2CH2) , 3.43 (m, 2 H, CH2CH2C)¾0) , 3.74 (m, 1 H, C4,-H), 3.85 (m, 2 H, C5'— H), 4.31 (m, 1 H, CS'-H), 5.36 (d, /=4.4, CS'-OH), 6.20 (t, /=6.8, Cl'-H), 7.37, 7.59 (2 m, 21 H, arom. H, C4-H) , 11.38 (s, 1 H, NH)。 5 (3-hydroxypropyl)-deoxyuridine was synthesized as described in the literature 24. To a solution of 5 (3-hydroxypropyl)-deoxyuridine (0.75 g) in DMF (10 ml), EtOAc (EtOAc: EtOAc (EtOAc) Stir for 5 h and stop the reaction by adding methanol. Column chromatography gave 0.1 g of a white foamy solid, yield 37.6%. Rf = 0.3 (DCM / MeOH = 30: 1). ^ NMR (DMSO— ): δ 0.93, 0.98 (2 s, 18 H, 2 tBu), 1.54 (m, 2 H, CH 2 C 2 CH 2 ) , 2.02, 2.11 (2 m, 4H, C2 , -2H , C^ 2 CH 2 CH 2 ) , 3.43 (m, 2 H, CH 2 CH 2 C) 3⁄40) , 3.74 (m, 1 H, C4 , -H), 3.85 (m, 2 H, C5'- H ), 4.31 (m, 1 H, CS'-H), 5.36 (d, /=4.4, CS'-OH), 6.20 (t, /=6.8, Cl'-H), 7.37, 7.59 (2 m, 21 H, arom. H, C4-H) , 11.38 (s, 1 H, NH).
13C NMR (DMSO- ): δ 18.79, 23.23, 26.63, 31.08, 39.49, 63.10, 64.07, 70.25, 83.77, 86.52, 113.634, 127.90, 129.90, 135.09, 150.28, 163.21。 元素分析: C44H54N206Si2 (M 763.08) , C 69.25, H 7.13, N 3.67; 测定值, C 68.97, H 7.15, N 3.39。 1- [ (2-去氧- β -D-呋喃核糖- 5- (叔丁基二苯基硅基) ] -5- (3- 叔丁基二苯基硅氧基-丙基) -1H, 3H-嘧啶- 2, 4-二酮 3'- [(2-氰乙 基) - N, N-二异丙基亚酰胺] (16c-p) 1 3 C NMR (DMSO- ): δ 18.79, 23.23, 26.63, 31.08, 39.49, 63.10, 64.07, 70.25, 83.77, 86.52, 113.634, 127.90, 129.90, 135.09, 150.28, 163.21. Elemental analysis: C 44 H 54 N 2 0 6 Si 2 (M 763.08), C 69.25, H 7.13, N 3.67; 1-[(2-Deoxy-β-D-ribofuranosyl-5-(tert-butyldiphenylsilyl)]-5-(3-tert-butyldiphenylsilyloxy-propyl)-1H , 3H-pyrimidine-2,4-dione 3'-[(2-cyanoethyl)-N,N-diisopropylimide] (16c-p)
将 16c (0.8 g, 1.52 mmol溶于 DCM(15 ml)中, 加入二异丙 胺-四氮唑盐(0.13 g, 0.76 mmol) , 和磷酰化试剂(0.5 g, 1.67 mmol),, 此溶液先后用 NaHC03和水洗涤, 有机相用无水 Na2S04干 燥。 柱层析分离, 得白色泡沫 0.7 g, 产率 55.6%。 Rf =0.5 (DCM/ 丙酮 =15.1)。 16c (0.8 g, 1.52 mmol in DCM (15 ml), diisopropylamine-tetrazolium salt (0.13 g, 0.76 mmol), and phosphorylating reagent (0.5 g, 1.67 mmol). washed with NaHC0 3 and water, the organic phase was dried over anhydrous Na 2 S0 4. column chromatography, as a white foam 0.7 g, yield 55.6%. Rf = 0.5 (DCM / acetone = 15.1).
JH NMR (DMSO-^): δ 1.00, 1.06 (2 s, 18 H, 2 tBu), 1.18 [m, 12 H, 2 CH (Cff3) 2] , 1.62, 2.13 {2 m, 6 H, N[C (CH3)2〗2, 0CH2C)¾CN, 5-CH2C^2CH2} , 2.45, 2.63 (2 m, 2 H, C2'H), 3.46-3.94 (m, 8 H, 5-C)¾CH2C)¾, 0C)¾CH2CN, C5'— H), 4.09 (m, 1 H, 4'H), 4.63 (t, /=4.0, CS'-H), 6.35 (t, /=8.0, Cl'-H), 7.26-7.66 (m, 21 H, arom. H, C4-H) , 8.09 (s, 1 H, NH)。 31P NMR (CDC13): 149.08, 149.11。 J H NMR (DMSO-^): δ 1.00, 1.06 (2 s, 18 H, 2 tBu), 1.18 [m, 12 H, 2 CH (Cff 3 ) 2 ] , 1.62, 2.13 {2 m, 6 H, N[C (CH 3 ) 2 〗 2 , 0CH 2 C) 3⁄4CN, 5-CH 2 C^ 2 CH 2 } , 2.45, 2.63 (2 m, 2 H, C2'H), 3.46-3.94 (m, 8 H, 5-C) 3⁄4CH 2 C) 3⁄4, 0C) 3⁄4CH 2 CN, C5' — H), 4.09 (m, 1 H, 4'H), 4.63 (t, /=4.0, CS'-H), 6.35 (t, /=8.0, Cl'-H), 7.26-7.66 (m, 21 H, arom. H, C4-H), 8.09 (s, 1 H, NH). 31 P NMR (CDC1 3 ): 149.08, 149.11.
实施例 2 合成核苷单体 15c和它的亚磷酰胺单体 15c-p Example 2 Synthesis of Nucleoside Monomer 15c and Its Phosphoramidite Monomer 15c-p
15c-p 15c-p
(i) TBDPS-CI,咪唑,在 DCM中,在 r.t.下; (i) TBDPS-CI, imidazole, in DCM, under r.t.
(ii) (NCCH2CH2〇)[(i-Pr)2N]2P, (i-Pr)2EtN 四氮唑盐,在 CH2CI2中,在 r.t.下 反应路线 13 核苷单体 15c和它的亚磷酰胺单体 15c- p的合成路线 1- [ (2-去氧- β -D-呋喃核糖- 5- (叔丁基二苯基硅基) ] -5- (2- 叔丁基二苯基硅氧基-乙基) -1H, 3H-嘧啶 -2, 4-二酮(15c) (ii) (NCCH 2 CH 2 〇) [(i-Pr) 2 N] 2 P, (i-Pr) 2 EtN Tetrazolium salt, in CH 2 CI 2 , reaction route 13 at rt Synthesis route of body 15c and its phosphoramidite monomer 15c-p 1-[(2-Deoxy-β-D-ribofuranosyl-5-(tert-butyldiphenylsilyl)]-5-(2-tert-butyldiphenylsilyloxy-ethyl)-1H , 3H-pyrimidine-2, 4-dione (15c)
按文献 24 中的方法合成 5- (叔丁基二苯基硅氧 -乙基)-脱氧 尿苷。 将 5- (叔丁基二苯基硅氧 -乙基)-脱氧尿苷(0.9 g, 1.76 mmol)溶于 DCM(30 ml)中, 向此溶液中加入咪唑(0.24 g, 3.53 mmol), 然后分批加入 TBDPS- CI (0.53 g, 1.94 mmol)。 反应结束 后,浓缩溶液,柱层析分离得白色泡沫状固体 0.85 g,产率 64.4%„ Rf=0.3 (DCM/MeOH=30: 1)。 NMR (DMS0— ): δ 0.91, 1.0 (2 s, 18 H, 2 tBu), 2.08 (m, 2 H, C5-C^2CH2) , 2.34 (m, 2 H, C2,-H), 3.63 (m, 1H, C5-CH2C 20) , 3.74 (m, 1 H, C4,-H), 3.86 (m, 2 H, C5'— H), 4.28 (m, 1 H, C3,-H), 5.32 (d, /=4.4, CS'-OH), 6.19 (t, 7=6.4, Cl'-H), 7.34-7.64 (m, 21 H, arom. H, C4-H) , 11.33 (s, 1 H, NH)„ 13C NMR (DMSO- ): δ 18.66, 26.53, 30.06, 39.50, 54.89, 61.72, 64.04, 70.20, 83.74, 86.45, 110.44, 127.71, 129.91, 133.51, 134.94, 136.87, 150.25, 162.80。 元素分析: C43H52N206Si2 (M 749.05), C 68.95, H 7.00, N 3.74; 测定值, C 68.73, H 6.89, N 3.45。 5-(tert-Butyldiphenylsilyloxy-ethyl)-deoxyuridine was synthesized as described in the literature 24. 5-(tert-Butyldiphenylsilyloxy-ethyl)-deoxyuridine (0.9 g, 1.76 mmol) was dissolved in DCM (30 mL). Toluene (0.24 g, 3.53 mmol) TBDPS-CI (0.53 g, 1.94 mmol) was then added in portions. After completion of the reaction, the solution was concentrated and purified by column chromatography to yield white white solid (yield:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: , 18 H, 2 tBu), 2.08 (m, 2 H, C5-C^ 2 CH 2 ) , 2.34 (m, 2 H, C2 , -H), 3.63 (m, 1H, C5-CH 2 C 2 0 ), 3.74 (m, 1 H, C4 , -H), 3.86 (m, 2 H, C5'- H), 4.28 (m, 1 H, C3,-H), 5.32 (d, /=4.4, CS '-OH), 6.19 (t, 7=6.4, Cl'-H), 7.34-7.64 (m, 21 H, arom. H, C4-H) , 11.33 (s, 1 H, NH) „ 13 C NMR (DMSO- ): δ 18.66, 26.53, 30.06, 39.50, 54.89, 61.72, 64.04, 70.20, 83.74, 86.45, 110.44, 127.71, 129.91, 133.51, 134.94, 136.87, 150.25, 162.80. Elemental analysis: C 43 H 52 N 2 0 6 Si 2 (M 749.05), C 68.95, H 7.00, N 3.74; </ RTI></RTI> C 68.73, H 6.89, N 3.45.
1- [ (2-去氧- β -D-呋喃核糖- 5- (叔丁基二苯基硅基) ] -5- (叔 丁基二苯基硅氧基-乙基) -1H, 3H-嘧啶- 2, 4-二酮 V - [ (2-氰乙 基) - N, N-二异丙基亚酰胺] (15c-p) 1-[(2-Deoxy-β-D-ribofuranosyl-5-(tert-butyldiphenylsilyl)]-5-(tert-butyldiphenylsilyloxy-ethyl)-1H, 3H -pyrimidine-2,4-dione V-[(2-cyanoethyl)-N,N-diisopropylimide] (15c-p)
将化合物 15c (0.8 g, 1.52 mmol)溶于 DCM (15 ml)中, 加入 二异丙胺-四氮唑盐 0.13g (0.76腿 ol) , 磷酰化试剂(0.5 g, 1.67 mmol),, 搅拌 2h。 将此溶液用先后用 NaHC03溶液和盐水洗涤, 有 机相用无水 Na2S04干燥。 柱层析分离, 得无色泡沫状固体 0.7 g, 产率 55.6%0 Rf=0.5(DCM/丙酮 =15.1)。 ^ NMR (CDCU : δ 1.0-1.59 {m, 30 H, 2 tBu, N [CH (Cff3) 2] 2} , 2.06 (m, 1 H, C2,-H J, 2.36-2.63 (m, 5 H, C5-CH2, 0CH2C CN, Cl'- ,), 3.55-3.94 (m, 8 H, C5-CH2C^0, N[C (CH3)2〗2, 0C^2CH2CN, C5,-H), 4.11 (m, 1 H, C4'— H), 4.58 (m, 1 H, C3'— H), 6.30 (m, 1H, Cl'-H), 7.26-7.68 (m, arom. H, C4-H)„ 31P NMR (CDC13): 148.98, 149.49。 实施例 3 合成核苷单体 14c和它的亚磷酰胺单体 14c-p Compound 15c (0.8 g, 1.52 mmol) was dissolved in DCM (15 ml), diisopropylamine-tetrazolium salt 0.13 g (0.76 leg ol), phosphorylating reagent (0.5 g, 1.67 mmol), stirring 2h. This solution was washed with NaHC0 3 solution and brine, the organic phase was dried over anhydrous Na 2 S0 4. Separation by column chromatography gave a colorless foamy solid 0.7 g. Yield 55.6% 0 Rf = 0.5 (DCM / acetone = 15.1). ^ NMR (CDCU : δ 1.0-1.59 {m, 30 H, 2 tBu, N [CH (Cff 3 ) 2 ] 2 } , 2.06 (m, 1 H, C2, -HJ, 2.36-2.63 (m, 5 H , C5-CH 2 , 0CH 2 C CN, Cl'- ,), 3.55-3.94 (m, 8 H, C5-CH 2 C^0, N[C (CH 3 ) 2 〗 2 , 0C^ 2 CH 2 CN, C5,-H), 4.11 (m, 1 H, C4'- H), 4.58 (m, 1 H, C3'- H), 6.30 (m, 1H, Cl'-H), 7.26-7.68 ( m, arom. H, C4-H) „ 31 P NMR (CDC1 3 ): 148.98, 149.49. Example 3 Synthesis of nucleoside monomer 14c and its phosphoramidite monomer 14c-p
(i) TBDPS-CI,咪唑,在 DCM中,在 r.t.下; (i) TBDPS-CI, imidazole, in DCM, under r.t.
(ii) (NCCH2CH20)[(i-Pr)2N]2P, (i-Pr)2EtN四氮唑盐,在 CH2CI2中,在 r.t.下 反应路线 14 核苷单体 14c和它的亚磷酰胺结构 14c- p的合成路线 (ii) (NCCH 2 CH 2 0)[(i-Pr) 2 N] 2 P, (i-Pr) 2 EtN tetrazolium salt, in CH 2 CI 2 , reaction route 14 at rt Synthesis route of body 14c and its phosphoramidite structure 14c-p
1- [ (2-去氧- β -D-呋喃核糖- 5- (叔丁基二苯基硅基) ] -5- (叔 丁基二苯基硅氧基-甲基) -1H, 3Η-嘧啶- 2, 4-二酮(14c) 1-[(2-Deoxy-β-D-ribofuranosyl-5-(tert-butyldiphenylsilyl)]-5-(tert-butyldiphenylsilyloxy-methyl)-1H, 3Η -pyrimidine-2,4-dione (14c)
按文献 24中的方法合成 5- (叔丁基二苯基硅氧甲基) -脱氧尿 苷。 将 5- (叔丁基二苯基硅氧甲基) -脱氧尿苷(0.8 g, 1.62腿 ol) 溶于 DCMQO ml)中, 向此溶液中加入咪唑(0.22 g, 3.24 mmol) , 并分批加入 TBDPS- C1 (0.49 g, 1.78 mmol)。 反应结束后, 柱层 析分离,得白色泡沫状固体 0.8 g,产率 67.2%„ Rf=0.3 (DCM/MeOH =30: 1)。 NMR (DMSO-^): δ 0.88, 0.95 (2 s, 19 H, 2 tBu), 2.04-2.33 (m, 2 H, C2,-H), 3.68-3.89 (m, 3 H, C -H, CS'-H), 4.16-4.32 (m, 3 H, C5-CH20, CS'-H), 5.38 (d, /=4.4, CS'-OH), 6.16 (t, 7=6.8, Cl'-H), 7.34-7.69 (m, 21 H, arom. H, C4-H) , 11.43 (s, 1 H, NH)„ 13C NMR (DMSO- ): δ 25.48, 26.91, 41.29, 65.20, 66.67, 71.65, 73.36, 77.12, 109.76, 174.16。 元素 分析: C42H50N2O6Si2 (M 735.03), C 68.63, H 6.86, N 3.81; 测 定值, C 68.66, H 6.64, N 3.59。 5-(tert-Butyldiphenylsilyloxymethyl)-deoxyuridine was synthesized as described in the literature 24. Add 5-(tert-butyldiphenylsilyloxymethyl)-deoxyuridine (0.8 g, 1.62 leg ol) to DCMQO ml), add imidazole (0.22 g, 3.24 mmol) to this solution, and divide TBDPS-C1 (0.49 g, 1.78 mmol) was added in batches. After completion of the reaction, column chromatography was carried out to give a white foamy solid, 0.8 g, yield 67.2% „ Rf=0.3 (DCM/MeOH =30: 1). NMR (DMSO-^): δ 0.88, 0.95 (2 s, 19 H, 2 tBu), 2.04-2.33 (m, 2 H, C2 , -H), 3.68-3.89 (m, 3 H, C -H, CS'-H), 4.16-4.32 (m, 3 H, C5-CH 2 0, CS'-H), 5.38 (d, /=4.4, CS'-OH), 6.16 (t, 7=6.8, Cl '-H), 7.34-7.69 (m, 21 H, arom. H, C4-H), 11.43 (s, 1 H, NH) „ 13 C NMR (DMSO- ): δ 25.48, 26.91, 41.29, 65.20, 66.67, 71.65, 73.36, 77.12, 109.76, 174.16 elemental analysis: C 42 H 50 N 2 O 6 Si 2 (M 735.03), C 68.63, H 6.86, N 3.81; measured value, C 68.66, H 6.64, N 3.59. .
1- [ (2-去氧- β -D-呋喃核糖- 5- (叔丁基二苯基硅基) ] -5- (叔 丁基二苯基硅氧基-甲基) -1H, 3H-嘧啶- 2, 4-二酮 V - [ (2-氰乙 基) - N, N-二异丙基亚酰胺] (14c-p) 1-[(2-Deoxy-β-D-ribofuranosyl-5-(tert-butyldiphenylsilyl)]-5-(tert-butyldiphenylsilyloxy-methyl)-1H, 3H -pyrimidine-2,4-dione V-[(2-cyanoethyl)-N,N-diisopropylimide] (14c-p)
将化合物 14c (0.5 g, 0.98 mmol) , 溶于 DCM (15 ml)中, 并 加入二异丙胺 -四氮唑盐(0.1 g, 0.5腿 ol)和磷酰化试剂(0.5 g, 1.67 mmol)。 TLC检测反应完全, 先后用 NaHC03溶液和盐水洗涤, 有机相用无水 Na2S04干燥。柱层析分离 ,得白色泡沫状固体 0.5 g, 产率 56.1%„ Rf=0.7(DCM/丙酮 =15.1)。 ^ NMR (CDCU : δ 0.96-1.19 {m, 30 H, 2 tBu, N [CH (Cff3) 2] 2} , 2.04 (m, 1 H, C2,-H J, 2.47 (m, 2 H, 0CH2C 2CN) , 2.61 (m, 1 H, Cl'- ,), 3.56-3.83 (m, 6 H, N [C#(CH3) 2] 2, OC 2CN, C5,-H), 4.13 (m, 1 H, C4,-H), 4.40 (s, 2 H, C5-CH2) , 4.51 (m, 1 H, C3'— H), 6.21 (m, 1 H, Cl'-H), 7.26-7.64 (m, 21 H, arom. H, C4-H) , 8.08 (s, 1H, NH)。 31P NMR (CDC13): 149.36, 149.79。 实施例 4 核酸结构的合成与性质研究 Compound 14c (0.5 g, 0.98 mmol) was dissolved in DCM (15 ml), and diisopropylamine-tetrazolium salt (0.1 g, 0.5 leg ol) and phosphorylating reagent (0.5 g, 1.67 mmol) . Completion of the reaction by TLC, washed with NaHC0 3 solution and brine successively. The organic phase was dried over anhydrous Na 2 S0 4. Column chromatography gave 0.5 g of a white foamy solid, yield 56.1% </ </ RTI></RTI> Rf = 0.7 (DCM/acetone = 15.1). NMR (CDCU: δ 0.96-1.19 {m, 30 H, 2 tBu, N [CH (Cff 3 ) 2 ] 2 } , 2.04 (m, 1 H, C2, -HJ, 2.47 (m, 2 H, 0CH 2 C 2 CN) , 2.61 (m, 1 H, Cl'- ,), 3.56- 3.83 (m, 6 H, N [C#(CH 3 ) 2 ] 2 , OC 2 CN, C5,-H), 4.13 (m, 1 H, C4 , -H), 4.40 (s, 2 H, C5- CH 2 ) , 4.51 (m, 1 H, C3'- H), 6.21 (m, 1 H, Cl'-H), 7.26-7.64 (m, 21 H, arom. H, C4-H) , 8.08 ( s, 1H, NH) 31 P NMR (CDC1 3 ): 149.36, 149.79. Example 4 Synthesis and Properties of Nucleic Acid Structures
1. 序列的合成、 纯化与鉴定 所有序列均是采用固相亚磷酰胺三酯法, 应用 ABI公司 392 RNA/DNA 合成仪, 按照常规程序进行合成。 合成的序列用高效液 相色谱进行纯化。 最后使用固相萃取柱进行脱盐处理, 用 MALDI- T0F鉴定, 其中带 DMT基团的序列用 ESI- MS鉴定。 1. Synthesis, purification and identification of sequences All sequences were synthesized using a solid phase phosphoramidite triester method using an ABI 392 RNA/DNA synthesizer according to conventional procedures. The synthesized sequence was purified by high performance liquid chromatography. Finally, desalting treatment was carried out using a solid phase extraction column and identified by MALDI-TOF, wherein the sequence with the DMT group was identified by ESI-MS.
固相亚磷酰胺三酯法主要包括以下步骤: (1)脱保护: 用三氟 乙酸脱去树脂珠(CPG)末端核苷酸的 5' -羟基上的 DMT基团,使羟 基游离出来; (2)缩合: 亚磷酰胺单体用四氮唑活化, 形成亚磷酰 胺四氮唑活性中间体, 并与树脂珠末端核苷酸的 5' -羟基发生亲 核反应; (3)封闭: 为了避免副反应的发生, 将偶联反应中未反应 的羟基基团用乙酰基封闭; (4)氧化:使亚磷酰胺单体转化为稳定 的磷酰胺单体, 进入下一个循环过程。 The solid phase phosphoramidite triester method mainly comprises the following steps: (1) Deprotection: removing the DMT group on the 5'-hydroxyl group of the terminal nucleotide of the resin beads (CPG) with trifluoroacetic acid to release the hydroxyl group; (2) Condensation: The phosphoramidite monomer is activated with tetrazolium to form a reactive intermediate of phosphoramidite tetrazolium, and undergoes nucleophilic reaction with the 5'-hydroxyl group of the terminal nucleotide of the resin bead; (3) Blocking: To avoid the occurrence of side reactions, the unreacted hydroxyl group in the coupling reaction is blocked with an acetyl group; (4) Oxidation: The phosphoramidite monomer is converted into a stable phosphoramide monomer, and proceeds to the next cycle.
合成好的序列在 55 下, 浓氨水中处理 2. 5 h使之从 CPG上 脱除, 同时脱除天然单体的保护基, 经检测含有 TBDPS保护基的 序列(LK- CW- G02至 LK- CW- G15)。减压蒸去氨水,用少量水溶解得 到无色透明的水溶液。 所有的序列均是通过 HPLC (色谱柱: Diamons i l , C18, 5 μ, 250 x 4. 6mm)纯化, 在 0. 1 M的醋酸铵緩 冲溶液中, 梯度为 30 min内 CH3CN从 20%到 100%。 表 2为部分序 列的保留时间。 The synthesized sequence was removed in concentrated ammonia water for 2.5 h, removed from the CPG, and the protective group of the natural monomer was removed. The sequence containing the TBDPS protecting group was detected (LK-CW-G02 to LK). - CW- G15). Ammonia water was distilled off under reduced pressure, and dissolved with a small amount of water to obtain a colorless, transparent aqueous solution. All sequences were purified by HPLC (column: Diamons il, C18, 5 μ, 250 x 4. 6 mm) in a 0.1 M ammonium acetate buffer solution with a gradient of 30 min CH 3 CN from 20 % to 100%. Table 2 shows the retention times of the partial sequences.
HPLC纯化核酸结构的保留时间。 The retention time of the nucleic acid structure was purified by HPLC.
编号 序列(5'-3') tR (min) Numbering sequence (5'-3') t R (min)
LK-CW-G07 d(i<feGGGAG) 11.67 LK-CW-G07 d(i<feGGGAG) 11.67
LK-CW-G13 d(i^cGGGAG) 16.8 LK-CW-G13 d(i^cGGGAG) 16.8
LK-CW-G14 d(iJcGGGAG) 17.2 LK-CW-G14 d(iJcGGGAG) 17.2
LK-CW-G15 d(i<fcGGGAG) 18.5 LK-CW-G15 d(i<fcGGGAG) 18.5
LK-CW-G16 dUTGGGAG) 17.6和 19.8 其中大部分序列有明显的两个峰, 经分别质谱鉴定二者为同 一化合物,推测前者是单链寡脱氧核苷酸,后者为 G-四螺旋结构。 纯化后的序列用 HPLC (色傳柱: MACHEREY- NAGEL, C18, 5μ 150 χ 4.6 mm)脱盐处理。 所有序列经过质谱鉴定。 表 3 为部分序列 的质谱鉴定结果。 LK-CW-G16 dUTGGGAG) 17.6 and 19.8 Most of the sequences have two distinct peaks, and the two are identified by mass spectrometry as the same compound. It is presumed that the former is a single-stranded oligodeoxynucleotide and the latter is a G-tetra-helical structure. . The purified sequence was desalted by HPLC (color column: MACHEREY-NAGEL, C18, 5μ 150 χ 4.6 mm). All sequences were identified by mass spectrometry. Table 3 shows the results of mass spectrometry identification of partial sequences.
表 3 核酸结构的 MALDI- T0F测定结果 Table 3 MALDI-TOF determination results of nucleic acid structure
利用圆二色谱确定修饰核酸的高级结构 将 2 μ M的核苷酸序列溶于緩冲液中,在室温下测定高级结构 的形成和特征峰。如图 1可见, LK- CW-01至 LK- CW- 07均显示出平 行四螺旋结构的特征 CD谱。 峰的位移是因为修饰结构而引起的, 但不影响整体的四螺旋结构的形成。 图 2为双螺旋结构 D01+D02 的 CD谱, 具有双螺旋结构的特征峰。 实施例 6 修饰核酸的抗 HIV-1融合活性评价研究 Determination of the advanced structure of modified nucleic acids by circular dichroism The 2 μM nucleotide sequence was dissolved in a buffer, and the formation and characteristic peaks of the high-order structure were measured at room temperature. As can be seen from Fig. 1, both LK-CW-01 to LK-CW-07 show characteristic CD spectra of parallel four-helix structures. The displacement of the peak is caused by the modified structure, but does not affect the formation of the overall four-helical structure. Fig. 2 is a CD spectrum of a double helix structure D01+D02, having a characteristic peak of a double helix structure. Example 6 Evaluation of Anti-HIV-1 Fusion Activity of Modified Nucleic Acids
荧光素酶细胞细胞融合实验用来检测由 HIV-1介导的细胞融 合。首先将 TZM- bl细胞铺在 96孔板上, 50 μ 1/孔的细胞悬浮液, 浓度 50万 /ml , 在 37 条件下培养 24小时。 然后将 HL2/3细胞 铺在已铺有 TZM- bl细胞的 96孔板上, 50 μ 1 /孔的细胞悬浮液, 浓度 170万 /ml , 96孔板的第 12列作为最低信号的空白对照不加 入 HL2/3细胞,以 50 μ 1 /孔的培养基代替。之后加入待测样品(样 品以一定浓度在圆底 96孔板上逐 4倍稀释,稀释至第十孔,十一、 十二孔只含有培养基作为对照, 样品在加入 HL2/3 细胞之前配 制)。 两种细胞在 37 下融合 6-8h, 之后将细胞裂解, 取 25 μ 1 / 孑 L的细胞裂解液至磚光板(cos tar , Whi te polys tyrene; Corning incorporated, USA)上对应孔, 再加入 40 μ 1 /孔荧光试剂在酶标 仪中进行检测。 部分核酸结构的活性数据如表 4 , 表 5所示。 修饰的脱氧核苷酸序列的抑制 HIV-1融合的活性 Luciferase cell fusion experiments were used to detect cell fusion mediated by HIV-1. The TZM-bl cells were first plated on a 96-well plate, 50 μl/well of cell suspension at a concentration of 500,000 / ml, and cultured for 24 hours under conditions of 37. The HL2/3 cells were then plated on 96-well plates plated with TZM-bl cells, 50 μl/well of cell suspension at a concentration of 1.7 million/ml, and column 12 of the 96-well plate was used as the lowest signal blank. HL2/3 cells were not added and replaced with 50 μl/well of medium. Then add the sample to be tested (the sample is diluted 4 times in a round bottom 96-well plate to a 10th hole, and 11 and 12 holes contain only the medium as a control. The sample is prepared before adding HL2/3 cells. ). The two cells were fused at 37 for 6-8 h, then the cells were lysed, and 25 μl / 孑L of cell lysate was taken to the corresponding well on a brick plate (cos tar, Whi te polys tyrene; Corning incorporated, USA), and then added. 40 μl/well of fluorescent reagent was detected in a microplate reader. The activity data of some nucleic acid structures are shown in Table 4 and Table 5. Inhibition of modified deoxynucleotide sequences HIV-1 fusion activity
LK-CW-G05 d(iJaGGGAG)4 1.44 LK-CW-G05 d(iJaGGGAG) 4 1.44
LK-CW-G06 d(i<feGGGAG)4 0.89LK-CW-G06 d(i<feGGGAG) 4 0.89
LK-CW-G07 d(i<f«GGGAG)4 0.62LK-CW-G07 d(i<f«GGGAG) 4 0.62
LK-CW-G13 d( cGGGAG)4 4.97LK-CW-G13 d( cGGGAG) 4 4.97
LK-CW-G14 d(i/cGGGAG)4 1.42LK-CW-G14 d(i/cGGGAG) 4 1.42
LK-CW-G16 dU7GGGAG)4 2.02LK-CW-G16 dU7GGGAG) 4 2.02
D01+D02 2.28 修饰的 DM双螺旋结构的抑制 HIV- 1融合的活性 D01+D02 2.28 Modification of modified DM double helix structure HIV-1 fusion activity
编号 序列(5'-3') ic5。 Numbering sequence (5'-3') ic 5 .
LK-CX-D13 5' -d (DMT-iJaAGCGTATGCAGATTT 9.04 ± 0.194 LK-CX-D13 5' -d (DMT-iJaAGCGTATGCAGATTT 9.04 ± 0.194
3' -d (iJaTCGCATACGTCT 3' -d (iJaTCGCATACGTCT
LK-CX-D25 5, -d (DMT- aAGCGTATGCAGATTT 7.59土 0.17 y -d (KaTCGCATACGTCT ^ LK-CX-D25 5, -d (DMT- aAGCGTATGCAGATTT 7.59 soil 0.17 y -d (KaTCGCATACGTCT ^
LK-CX-D08 5' -d (DMT-iJaAGCGTATG) -3' 1.29 + 0.15 LK-CX-D09 y -d (i aTCGCATAC) -5' LK-CX-D08 5' -d (DMT-iJaAGCGTATG) -3' 1.29 + 0.15 LK-CX-D09 y -d (i aTCGCATAC) -5'
LK-CX-D10 5'-d (DMT-lAGCGTATG)-3, 3.20± 1· 15 LK-CX-Dll 3'-d(lTCGCATAC)-5' LK-CX-D10 5'-d (DMT-lAGCGTATG)-3, 3.20± 1· 15 LK-CX-Dll 3'-d(lTCGCATAC)-5'
LK-CX-D24 5, -d (DMT- AGCGTATG) -3, 3.08 + 0.36 LK-CX-Dll -d (KaTCGCATAC) -5' LK-CX-D24 5, -d (DMT- AGCGTATG) -3, 3.08 + 0.36 LK-CX-Dll -d (KaTCGCATAC) -5'
LK-CX-D26 5' -d (DMT-i-aTGCGTATG) -V 1.62 + 0.75 LK-CX-Dll -d (KaTCGCATAC) -5' LK-CX-D26 5' -d (DMT-i-aTGCGTATG) -V 1.62 + 0.75 LK-CX-Dll -d (KaTCGCATAC) -5'
LK-CX-D18 AAA-AGCGTATGCAGA)-5' ND LK-CX-D18 AAA-AGCGTATGCAGA)-5' ND
TCGCATACGTCT) -3' TCGCATACGTCT) -3'
LK-CX-D19 GAG-AGCGTATGCAGA)-5' ND LK-CX-D19 GAG-AGCGTATGCAGA)-5' ND
C TCGCATACGTCT) -3' C TCGCATACGTCT) -3'
LK-CX-D22 5, -d (GAGCi^aAi-aGGC) -3' 2.94 ± 0.78 LK-CX-D23 3'-d (CTCGAi-aACCG)-5' LK-CX-D22 5, -d (GAGCi^aAi-aGGC) -3' 2.94 ± 0.78 LK-CX-D23 3'-d (CTCGAi-aACCG)-5'
LK-CX-D08 5' -d (DMT-iJaAGCGTATG) -3' 1.29 + 0.15 LK-CX-D09 y -d (iJaTCGCATAC) -5' LK-CX-D08 5' -d (DMT-iJaAGCGTATG) -3' 1.29 + 0.15 LK-CX-D09 y -d (iJaTCGCATAC) -5'
LK-CX-D12 y 4.91 + 0.62 LK-CX-D12 y 4.91 + 0.62
LK-CX-D10 5' -d (DMT-i-eAGCGTATG) -V 3.20 ± 1.15 LK-CX-Dll ' -d (KaTCGCATAC) -5' 编号 序列(5'-3') ic5。 LK-CX-D10 5' -d (DMT-i-eAGCGTATG) -V 3.20 ± 1.15 LK-CX-Dll ' -d (KaTCGCATAC) -5' Numbering sequence (5'-3') ic 5 .
LK-CX-D15 5' -d (DMT-i-eAGCGTATGAC) -3' 1.90 ± 0.37 LK-CX-D16 3'-dU TCGCATACTG)-5' LK-CX-D15 5' -d (DMT-i-eAGCGTATGAC) -3' 1.90 ± 0.37 LK-CX-D16 3'-dU TCGCATACTG)-5'
LK-CX-D12 5' 4.91 + 0.62 LK-CX-D12 5' 4.91 + 0.62
LK-CX-D13 5, -d (DMT-iJ«AGCGTATGCAGATTTv 9.04土 0· 19 LK-CX-D13 5, -d (DMT-iJ«AGCGTATGCAGATTTv 9.04土 0· 19
3' - (iJaTCGCATACGTCT . ^ - ^ 3' - (iJaTCGCATACGTCT . ^ - ^
LK-CX-D14 5, -d (DMT-iJ«AGCGTATGCAGAAGCTTTT 8.31 + 0.72 LK-CX-D14 5, -d (DMT-iJ«AGCGTATGCAGAAGCTTTT 8.31 + 0.72
3' - (iJaTCGCATACGTCTTCGA 参考文献: 3' - (iJaTCGCATACGTCTTCGA References:
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(23) Robert, W. D. and Didier, T. (2000) The plasma membrane as a combat zone in the HIV battlefield. Genes & Develop. , 14, 2677-2688. (23) Robert, W. D. and Didier, T. (2000) The plasma membrane as a combat zone in the HIV battlefield. Genes & Develop. , 14, 2677-2688.
(24) Di. Zhang, Liang. Xu, Xia. Wei, Yamin. Li, Junl in He, and Kel iang Liu Hydroxyl-functional ized DM: an efficient orthogonal protecting strategy and duplex stability Nucleosides, Nucleotides, & Nucleic Acids, 2009, 28, 924-942. (24) Di. Zhang, Liang. Xu, Xia. Wei, Yamin. Li, Junl in He, and Kel iang Liu Hydroxyl-functional DM: an efficient orthogonal protection strategy and duplex stability Nucleosides, Nucleotides, & Nucleic Acids, 2009 , 28, 924-942.
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| CN1098107A (en) * | 1993-01-29 | 1995-02-01 | 三共株式会社 | Modified oligodeoxynucleotides, their preparation and their therapeutic use |
| WO1999019474A1 (en) * | 1997-10-14 | 1999-04-22 | Sankyo Company, Limited | Modified oligodeoxyribonucleotides having tggg sequence |
| JP2000290185A (en) * | 1999-04-08 | 2000-10-17 | Sankyo Co Ltd | Anti-aids agent containing modified oligodeoxyribonucleotide having tggg sequence |
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| CN1098107A (en) * | 1993-01-29 | 1995-02-01 | 三共株式会社 | Modified oligodeoxynucleotides, their preparation and their therapeutic use |
| WO1999019474A1 (en) * | 1997-10-14 | 1999-04-22 | Sankyo Company, Limited | Modified oligodeoxyribonucleotides having tggg sequence |
| JP2000290185A (en) * | 1999-04-08 | 2000-10-17 | Sankyo Co Ltd | Anti-aids agent containing modified oligodeoxyribonucleotide having tggg sequence |
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| CHOU, S.H. ET AL.: "DNA aptamers as potential anti-HIV agents.", TRENDS IN BIOCHEMICAL SCIENCES., vol. 30, no. 5, 7 April 2005 (2005-04-07), pages 231 - 234, XP005204491, DOI: doi:10.1016/j.tibs.2005.03.004 * |
| DI FABIO, G. ET AL.: "Discovery of novel anti-HIV active G-quadruplex-forming oligonucleotides.", CHEMICAL COMMUNICATIONS, vol. 47, no. 8, 16 December 2010 (2010-12-16), pages 2363 - 2365 * |
| HOTADA, H. ET AL.: "Biologically Active Oligodeoxyribonucleotides. 5.15'-End-Substituted d(TGGGAG) Possesses Anti-Human Immunodeficiency Virus Type 1 Activity by Forming a G-Quadruplex Structure.", JOURNAL OF MEDICINAL CHEMISTRY, vol. 41, no. 19, 15 August 1998 (1998-08-15), pages 3655 - 3663, XP055259105, DOI: doi:10.1021/jm970658w * |
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| XU, LIANG ET AL.: "A new phosphoramidite of 6-amino-l-hexanol and its application to synthesis of oligonucleotide-peptide conjugates", BULLETIN OF THE ACADEMY OF MILITARY MEDICAL SCIENCES, vol. 32, no. 5, October 2008 (2008-10-01), pages 410 - 413 * |
Cited By (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2014178082A1 (en) * | 2013-05-03 | 2014-11-06 | Council Of Scientific & Industrial Research | Novel 2'/3'/5'-(r/s)-serinyl functionalized oligonucleotides |
| US9920319B2 (en) | 2013-05-03 | 2018-03-20 | Council Of Scientific & Industrial Research | 2′/3′/5′-(R/S)-serinyl functionalized oligonucleotides |
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