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WO2008030111A3 - Method of searching one or more databases - Google Patents

Method of searching one or more databases Download PDF

Info

Publication number
WO2008030111A3
WO2008030111A3 PCT/NZ2007/000248 NZ2007000248W WO2008030111A3 WO 2008030111 A3 WO2008030111 A3 WO 2008030111A3 NZ 2007000248 W NZ2007000248 W NZ 2007000248W WO 2008030111 A3 WO2008030111 A3 WO 2008030111A3
Authority
WO
WIPO (PCT)
Prior art keywords
user
searching
sequences
database
search result
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/NZ2007/000248
Other languages
French (fr)
Other versions
WO2008030111A2 (en
Inventor
Matthias Thomas Frei
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
CARTESIAN GRIDSPEED Ltd
Original Assignee
CARTESIAN GRIDSPEED Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by CARTESIAN GRIDSPEED Ltd filed Critical CARTESIAN GRIDSPEED Ltd
Publication of WO2008030111A2 publication Critical patent/WO2008030111A2/en
Publication of WO2008030111A3 publication Critical patent/WO2008030111A3/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/10—Ontologies; Annotations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Biophysics (AREA)
  • Theoretical Computer Science (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)

Abstract

The invention comprises a method of searching one or more subject genetic sequences maintained in at least one database. The method comprises receiving a user identifier from a user; checking the received user identifier against a plurality of stored user identifiers; checking an authorisation record of the user identifier; on detecting a match between the received user identifier and one of the stored user identifiers, receiving a query genetic sequence; searching the or at least one of the subject genetic sequences in the database(s) for one or more sub-sequences of the query genetic sequence; determining a search result based at least partly on the results of searching the database(s) for the one or more sub-sequences; returning the search result to the user; and debiting the user for the search result.
PCT/NZ2007/000248 2006-09-06 2007-09-06 Method of searching one or more databases Ceased WO2008030111A2 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
NZ549692 2006-09-06
NZ54969206 2006-09-06

Publications (2)

Publication Number Publication Date
WO2008030111A2 WO2008030111A2 (en) 2008-03-13
WO2008030111A3 true WO2008030111A3 (en) 2008-06-26

Family

ID=39157691

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/NZ2007/000248 Ceased WO2008030111A2 (en) 2006-09-06 2007-09-06 Method of searching one or more databases

Country Status (1)

Country Link
WO (1) WO2008030111A2 (en)

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2001031011A2 (en) * 1999-10-26 2001-05-03 Bulla Lee A Jr Gene mining system and method
US20030113756A1 (en) * 2001-07-18 2003-06-19 Lawrence Mertz Methods of providing customized gene annotation reports
US20030220844A1 (en) * 2002-05-24 2003-11-27 Marnellos Georgios E. Method and system for purchasing genetic data
US6941317B1 (en) * 1999-09-14 2005-09-06 Eragen Biosciences, Inc. Graphical user interface for display and analysis of biological sequence data

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6941317B1 (en) * 1999-09-14 2005-09-06 Eragen Biosciences, Inc. Graphical user interface for display and analysis of biological sequence data
WO2001031011A2 (en) * 1999-10-26 2001-05-03 Bulla Lee A Jr Gene mining system and method
US20030113756A1 (en) * 2001-07-18 2003-06-19 Lawrence Mertz Methods of providing customized gene annotation reports
US20030220844A1 (en) * 2002-05-24 2003-11-27 Marnellos Georgios E. Method and system for purchasing genetic data

Also Published As

Publication number Publication date
WO2008030111A2 (en) 2008-03-13

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