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WO2004051544A3 - Methods and products for representing and analyzing complexes of biological molecules - Google Patents

Methods and products for representing and analyzing complexes of biological molecules Download PDF

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Publication number
WO2004051544A3
WO2004051544A3 PCT/CA2003/001883 CA0301883W WO2004051544A3 WO 2004051544 A3 WO2004051544 A3 WO 2004051544A3 CA 0301883 W CA0301883 W CA 0301883W WO 2004051544 A3 WO2004051544 A3 WO 2004051544A3
Authority
WO
WIPO (PCT)
Prior art keywords
products
methods
complexes
analyzing
representing
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/CA2003/001883
Other languages
French (fr)
Other versions
WO2004051544A2 (en
Inventor
Christopher Hogue
Gary Bader
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Mt Sinai Hospital
Original Assignee
Mt Sinai Hospital
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Mt Sinai Hospital filed Critical Mt Sinai Hospital
Priority to AU2003287815A priority Critical patent/AU2003287815A1/en
Publication of WO2004051544A2 publication Critical patent/WO2004051544A2/en
Anticipated expiration legal-status Critical
Publication of WO2004051544A3 publication Critical patent/WO2004051544A3/en
Ceased legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16C—COMPUTATIONAL CHEMISTRY; CHEMOINFORMATICS; COMPUTATIONAL MATERIALS SCIENCE
    • G16C20/00—Chemoinformatics, i.e. ICT specially adapted for the handling of physicochemical or structural data of chemical particles, elements, compounds or mixtures
    • G16C20/70—Machine learning, data mining or chemometrics

Landscapes

  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Medical Informatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Biophysics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Databases & Information Systems (AREA)
  • Analytical Chemistry (AREA)
  • Genetics & Genomics (AREA)
  • Physiology (AREA)
  • Artificial Intelligence (AREA)
  • Chemical & Material Sciences (AREA)
  • Bioethics (AREA)
  • Data Mining & Analysis (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Epidemiology (AREA)
  • Evolutionary Computation (AREA)
  • Public Health (AREA)
  • Software Systems (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Other Investigation Or Analysis Of Materials By Electrical Means (AREA)

Abstract

The invention relates to the analysis of relationships among and between objects, including systems, methods and products for representing and analyzing complexes of biological molecules in interaction networks. In particular, the invention provides systems, methods and products for identifying relationships in a data set of objects comprising detecting densely connected regions in the data set based solely on connectivity data of the objects.
PCT/CA2003/001883 2002-12-02 2003-12-02 Methods and products for representing and analyzing complexes of biological molecules Ceased WO2004051544A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2003287815A AU2003287815A1 (en) 2002-12-02 2003-12-02 Methods and products for representing and analyzing complexes of biological molecules

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US43048402P 2002-12-02 2002-12-02
US60/430,484 2002-12-02

Publications (2)

Publication Number Publication Date
WO2004051544A2 WO2004051544A2 (en) 2004-06-17
WO2004051544A3 true WO2004051544A3 (en) 2005-06-23

Family

ID=32469480

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/CA2003/001883 Ceased WO2004051544A2 (en) 2002-12-02 2003-12-02 Methods and products for representing and analyzing complexes of biological molecules

Country Status (2)

Country Link
AU (1) AU2003287815A1 (en)
WO (1) WO2004051544A2 (en)

Families Citing this family (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20070174019A1 (en) * 2003-08-14 2007-07-26 Aditya Vailaya Network-based approaches to identifying significant molecules based on high-throughput data analysis
WO2007035613A1 (en) * 2005-09-19 2007-03-29 Bg Medicine, Inc. Correlation analysis of biological systems
PT104617A (en) * 2008-06-13 2009-12-14 Biocant Ct De Inovacao Em Biot METHOD FOR PROCESSING PROTEIN DATA
US9852359B2 (en) 2015-09-14 2017-12-26 International Business Machines Corporation System, method, and recording medium for efficient cohesive subgraph identification in entity collections for inlier and outlier detection
CN106327343B (en) * 2016-08-24 2019-12-27 云南大学 Initial user selection method in social network influence propagation
CN106778763B (en) * 2016-11-11 2020-05-26 上海电机学院 Image representation method based on attribute graph
CN111667886B (en) * 2020-04-22 2023-04-18 大连理工大学 Dynamic protein compound identification method
CN116680296B (en) * 2023-06-12 2026-01-13 深圳计算科学研究院 Large-scale graph data processing system based on single machine

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6421668B1 (en) * 1999-08-05 2002-07-16 Agilent Technologies, Inc. Method and system for partitioning data into subsets of related data

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6421668B1 (en) * 1999-08-05 2002-07-16 Agilent Technologies, Inc. Method and system for partitioning data into subsets of related data

Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
BADER GARY D ET AL: "Analyzing yeast protein-protein interaction data obtained from different sources.", NATURE BIOTECHNOLOGY. OCT 2002, vol. 20, no. 10, October 2002 (2002-10-01), pages 991 - 997, XP002322763, ISSN: 1087-0156 *
MASLOV SERGEI ET AL: "Specificity and stability in topology of protein networks.", SCIENCE. 3 MAY 2002, vol. 296, no. 5569, 3 May 2002 (2002-05-03), pages 910 - 913, XP002323898, ISSN: 1095-9203 *
SCHUSTER S ET AL: "Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae.", BIOINFORMATICS (OXFORD, ENGLAND) FEB 2002, vol. 18, no. 2, February 2002 (2002-02-01), pages 351 - 361, XP002322765, ISSN: 1367-4803 *
WEISS M A: "DATA STRUCTURES AND ALGORITHM ANALYSIS IN C++", 1994, ADDISON-WESLEY PUBLISHING COMPANY, XP002323899 *

Also Published As

Publication number Publication date
WO2004051544A2 (en) 2004-06-17
AU2003287815A1 (en) 2004-06-23

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