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WO2003032108A3 - Confirmation sequencing - Google Patents

Confirmation sequencing Download PDF

Info

Publication number
WO2003032108A3
WO2003032108A3 PCT/US2002/027647 US0227647W WO03032108A3 WO 2003032108 A3 WO2003032108 A3 WO 2003032108A3 US 0227647 W US0227647 W US 0227647W WO 03032108 A3 WO03032108 A3 WO 03032108A3
Authority
WO
WIPO (PCT)
Prior art keywords
sequences
reference sequence
read
read sequences
corresponding reference
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2002/027647
Other languages
French (fr)
Other versions
WO2003032108A2 (en
Inventor
Marc Rubenfield
Truax Anuradha Thangavelu
Christopher P Strassel
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Oscient Pharmaceuticals Corp
Original Assignee
Genome Therapeutics Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Genome Therapeutics Corp filed Critical Genome Therapeutics Corp
Priority to AU2002332742A priority Critical patent/AU2002332742A1/en
Priority to EP02800827A priority patent/EP1430442A2/en
Publication of WO2003032108A2 publication Critical patent/WO2003032108A2/en
Anticipated expiration legal-status Critical
Publication of WO2003032108A3 publication Critical patent/WO2003032108A3/en
Ceased legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly

Landscapes

  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)

Abstract

The invention provides an automated method for determining similarity between each of two or more template sequences and a corresponding reference sequence. The method involves the computer implemented steps of (a) verifying that one or more first read sequences corresponding to one or more first portions of each of the two or more template sequences is substantially the same as a corresponding reference sequence, wherein the first read sequences are obtained by sequencing using a defined primer, and (b) confirming that one or more second read sequences corresponding to second portions of one or more verified template sequences is substantially the same as the corresponding reference sequence, wherein the second read sequences are obtained using reference sequence primers.
PCT/US2002/027647 2001-08-29 2002-08-29 Confirmation sequencing Ceased WO2003032108A2 (en)

Priority Applications (2)

Application Number Priority Date Filing Date Title
AU2002332742A AU2002332742A1 (en) 2001-08-29 2002-08-29 Confirmation sequencing
EP02800827A EP1430442A2 (en) 2001-08-29 2002-08-29 Confirmation sequencing

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US31607701P 2001-08-29 2001-08-29
US60/316,077 2001-08-29

Publications (2)

Publication Number Publication Date
WO2003032108A2 WO2003032108A2 (en) 2003-04-17
WO2003032108A3 true WO2003032108A3 (en) 2004-03-04

Family

ID=23227355

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2002/027647 Ceased WO2003032108A2 (en) 2001-08-29 2002-08-29 Confirmation sequencing

Country Status (4)

Country Link
US (1) US20030113767A1 (en)
EP (1) EP1430442A2 (en)
AU (1) AU2002332742A1 (en)
WO (1) WO2003032108A2 (en)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2007183767A (en) * 2006-01-05 2007-07-19 Fujitsu Ltd Method and system for deleting biological information
US10796000B2 (en) * 2016-06-11 2020-10-06 Intel Corporation Blockchain system with nucleobase sequencing as proof of work
CN112162990B (en) * 2020-09-30 2023-09-08 中国工商银行股份有限公司 Method, device and system for sequencing business data in cross-database manner

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
DE19950050A1 (en) * 1999-10-16 2001-04-26 Werner Mueller Functional alignment of non-classified DNA sequences, by identifying short consensus regions with best correspondence to reference sequences
WO2001071041A2 (en) * 2000-03-22 2001-09-27 Mergen Ltd. Microarray-based analysis of polynucleotide sequence variations
US6379957B1 (en) * 1998-09-21 2002-04-30 Leslie A. Johnston-Dow Methods for HIV sequencing and genotyping

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6379957B1 (en) * 1998-09-21 2002-04-30 Leslie A. Johnston-Dow Methods for HIV sequencing and genotyping
DE19950050A1 (en) * 1999-10-16 2001-04-26 Werner Mueller Functional alignment of non-classified DNA sequences, by identifying short consensus regions with best correspondence to reference sequences
WO2001071041A2 (en) * 2000-03-22 2001-09-27 Mergen Ltd. Microarray-based analysis of polynucleotide sequence variations

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
MILLER ET AL.: "A comprehensive approach to clustering of expressed human gene sequence: the sequence tag alignment and consensus knowledge base", GENOME RESEARCH, vol. 9, no. 11, November 1999 (1999-11-01), pages 1143 - 1155, XP002971536 *

Also Published As

Publication number Publication date
EP1430442A2 (en) 2004-06-23
WO2003032108A2 (en) 2003-04-17
US20030113767A1 (en) 2003-06-19
AU2002332742A1 (en) 2003-04-22

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