[go: up one dir, main page]

WO2002008949A3 - Methods and systems for evaluating a matching between measured data and standards - Google Patents

Methods and systems for evaluating a matching between measured data and standards Download PDF

Info

Publication number
WO2002008949A3
WO2002008949A3 PCT/US2001/023630 US0123630W WO0208949A3 WO 2002008949 A3 WO2002008949 A3 WO 2002008949A3 US 0123630 W US0123630 W US 0123630W WO 0208949 A3 WO0208949 A3 WO 0208949A3
Authority
WO
WIPO (PCT)
Prior art keywords
measured data
matching
data points
evaluating
standards
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2001/023630
Other languages
French (fr)
Other versions
WO2002008949A2 (en
Inventor
Heinz Breu
Hugh J Pasika
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Applied Biosystems Inc
Original Assignee
Applera Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Applera Corp filed Critical Applera Corp
Priority to AU8300301A priority Critical patent/AU8300301A/en
Priority to CA002416611A priority patent/CA2416611A1/en
Priority to EP01961761A priority patent/EP1350179A2/en
Priority to AU2001283003A priority patent/AU2001283003B2/en
Priority to JP2002514583A priority patent/JP2004505254A/en
Publication of WO2002008949A2 publication Critical patent/WO2002008949A2/en
Anticipated expiration legal-status Critical
Publication of WO2002008949A3 publication Critical patent/WO2002008949A3/en
Ceased legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/10—Complex mathematical operations
    • G06F17/18—Complex mathematical operations for evaluating statistical data, e.g. average values, frequency distributions, probability functions, regression analysis
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
    • G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
    • G01N27/416—Systems
    • G01N27/447—Systems using electrophoresis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N30/00—Investigating or analysing materials by separation into components using adsorption, absorption or similar phenomena or using ion-exchange, e.g. chromatography or field flow fractionation
    • G01N30/02—Column chromatography
    • G01N30/86—Signal analysis
    • G01N30/8675—Evaluation, i.e. decoding of the signal into analytical information
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N5/00—Computing arrangements using knowledge-based models
    • G06N5/02—Knowledge representation; Symbolic representation
    • G06N5/022—Knowledge engineering; Knowledge acquisition

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Data Mining & Analysis (AREA)
  • General Physics & Mathematics (AREA)
  • Molecular Biology (AREA)
  • Theoretical Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Chemical & Material Sciences (AREA)
  • Mathematical Physics (AREA)
  • Databases & Information Systems (AREA)
  • Pure & Applied Mathematics (AREA)
  • Mathematical Optimization (AREA)
  • Medical Informatics (AREA)
  • Mathematical Analysis (AREA)
  • Software Systems (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Computational Mathematics (AREA)
  • Evolutionary Biology (AREA)
  • Signal Processing (AREA)
  • General Engineering & Computer Science (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Public Health (AREA)
  • Evolutionary Computation (AREA)
  • Operations Research (AREA)
  • Probability & Statistics with Applications (AREA)
  • Epidemiology (AREA)
  • Algebra (AREA)
  • Bioethics (AREA)
  • Artificial Intelligence (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Electrochemistry (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)

Abstract

The present invention proposes an approach to matching measured data points representative of a physical property (for instance the measured peak location or positions of an in-lane size standard which represent DNA fragment length) to a set of standard values of that property (for instance a size standard definition). The matching is evaluated by comparing ratios of intervals between selected pairs of the measured data points with ratios of the intervals between adjacent pairs of the standard values, to find the measured data points that best match the standard values.
PCT/US2001/023630 2000-07-21 2001-07-23 Methods and systems for evaluating a matching between measured data and standards Ceased WO2002008949A2 (en)

Priority Applications (5)

Application Number Priority Date Filing Date Title
AU8300301A AU8300301A (en) 2000-07-21 2001-07-23 Methods and systems for evaluating a matching between measured data and standards
CA002416611A CA2416611A1 (en) 2000-07-21 2001-07-23 Methods and systems for evaluating a matching between measured data and standards
EP01961761A EP1350179A2 (en) 2000-07-21 2001-07-23 Methods and systems for evaluating a matching between measured data and standards
AU2001283003A AU2001283003B2 (en) 2000-07-21 2001-07-23 Methods and systems for evaluating a matching between measured data and standards
JP2002514583A JP2004505254A (en) 2000-07-21 2001-07-23 Method and system for evaluating the match between measured data and a standard

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US21969700P 2000-07-21 2000-07-21
US60/219,697 2000-07-21

Publications (2)

Publication Number Publication Date
WO2002008949A2 WO2002008949A2 (en) 2002-01-31
WO2002008949A3 true WO2002008949A3 (en) 2003-07-31

Family

ID=22820389

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2001/023630 Ceased WO2002008949A2 (en) 2000-07-21 2001-07-23 Methods and systems for evaluating a matching between measured data and standards

Country Status (5)

Country Link
EP (1) EP1350179A2 (en)
JP (1) JP2004505254A (en)
AU (2) AU2001283003B2 (en)
CA (1) CA2416611A1 (en)
WO (1) WO2002008949A2 (en)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2012002930A1 (en) * 2010-06-29 2012-01-05 Analogic Corporation Internal sizing/lane standard signal verification
GB201511508D0 (en) * 2015-07-01 2015-08-12 Ge Healthcare Bio Sciences Ab Method for determining a size of biomolecules

Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1993014224A1 (en) * 1992-01-14 1993-07-22 Applied Biosystems, Inc. Size-calibration dna fragment mixture and method
US5876933A (en) * 1994-09-29 1999-03-02 Perlin; Mark W. Method and system for genotyping
WO2000016087A1 (en) * 1998-09-16 2000-03-23 The Perkin-Elmer Corporation Spectral calibration of fluorescent polynucleotide separation apparatus
US6054268A (en) * 1994-06-17 2000-04-25 Perlin; Mark W. Method and system for genotyping
EP1128311A2 (en) * 2000-02-15 2001-08-29 Mark W. Perlin A method and system for DNA analysis

Patent Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1993014224A1 (en) * 1992-01-14 1993-07-22 Applied Biosystems, Inc. Size-calibration dna fragment mixture and method
US6054268A (en) * 1994-06-17 2000-04-25 Perlin; Mark W. Method and system for genotyping
US5876933A (en) * 1994-09-29 1999-03-02 Perlin; Mark W. Method and system for genotyping
WO2000016087A1 (en) * 1998-09-16 2000-03-23 The Perkin-Elmer Corporation Spectral calibration of fluorescent polynucleotide separation apparatus
EP1128311A2 (en) * 2000-02-15 2001-08-29 Mark W. Perlin A method and system for DNA analysis

Also Published As

Publication number Publication date
AU2001283003B2 (en) 2004-04-08
CA2416611A1 (en) 2002-01-31
JP2004505254A (en) 2004-02-19
AU8300301A (en) 2002-02-05
WO2002008949A2 (en) 2002-01-31
EP1350179A2 (en) 2003-10-08

Similar Documents

Publication Publication Date Title
WO2004019184A3 (en) Method of authentificating an object or entity using a random binary id code subject to bit drift
SG116443A1 (en) Wiring and method of manufacturing the same, and wiring board and method of manufacturing the same.
WO2003027259A3 (en) Assays for dna methylation changes
AU2002333834A1 (en) System, method and computer program for conducting optical transmission measurements and evaluating determined measuring variables
AU4859001A (en) Method of evaluating queries against received event information
DE10297014T5 (en) Multi-dimensional, multi-level content protection
BRPI0604809B8 (en) surgical system and surgical tape sized and shaped to be received on a tape receiving portion of a surgical console
WO2003017177A3 (en) Method and system for profiling biological systems
WO2007104992A3 (en) Mass spectrometer
WO2007031908A3 (en) Improved device, system and method for determining authenticity of an item
DK1274155T3 (en) Connector for multiple, paired connectors, which connector has different interface shapes
WO2003032652A3 (en) Method and apparatus for evaluating and optimizing a signaling system
WO2001085978A3 (en) Method for high-throughput lead profiling
WO2003087815A3 (en) Method for the identification of inhibitors of the binding of are-containing mrn a and an hur protein
WO2003090050A3 (en) System and method for detecting malicicous code
EP1365256A4 (en) Distance measuring device, distance measuring equipment and distance measuring method
WO2003062943A3 (en) Method for analyzing data to identify network motifs
HK1049185A1 (en) Modified fluorescent proteins
ITRM20010009A0 (en) EQUIPMENT AND CONVEYANCE METHOD.
FI20030964A0 (en) Antenna matching method, system and network element
WO2002008949A3 (en) Methods and systems for evaluating a matching between measured data and standards
WO2002018636A3 (en) Improvements in and relating to marking using dna
WO2004028081A3 (en) Method and system for determining the topology of a modular analysis system
WO2002044949A3 (en) Minimal identification of features
WO2005035262A3 (en) Security document

Legal Events

Date Code Title Description
AK Designated states

Kind code of ref document: A2

Designated state(s): AE AG AL AM AT AU AZ BA BB BG BR BY BZ CA CH CN CO CR CU CZ DE DK DM DZ EC EE ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MA MD MG MK MN MW MX MZ NO NZ PL PT RO RU SD SE SG SI SK SL TJ TM TR TT TZ UA UG UZ VN YU ZA ZW

AL Designated countries for regional patents

Kind code of ref document: A2

Designated state(s): GH GM KE LS MW MZ SD SL SZ TZ UG ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE TR BF BJ CF CG CI CM GA GN GQ GW ML MR NE SN TD TG

121 Ep: the epo has been informed by wipo that ep was designated in this application
DFPE Request for preliminary examination filed prior to expiration of 19th month from priority date (pct application filed before 20040101)
WWE Wipo information: entry into national phase

Ref document number: 2416611

Country of ref document: CA

WWE Wipo information: entry into national phase

Ref document number: 2001961761

Country of ref document: EP

WWE Wipo information: entry into national phase

Ref document number: 2001283003

Country of ref document: AU

REG Reference to national code

Ref country code: DE

Ref legal event code: 8642

WWP Wipo information: published in national office

Ref document number: 2001961761

Country of ref document: EP

WWG Wipo information: grant in national office

Ref document number: 2001283003

Country of ref document: AU