WO2002061103A1 - Method for obtaining packaging cells producing retrovirus by eliminating cells liable to be infected by the retrovirus produced - Google Patents
Method for obtaining packaging cells producing retrovirus by eliminating cells liable to be infected by the retrovirus produced Download PDFInfo
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- WO2002061103A1 WO2002061103A1 PCT/FR2002/000339 FR0200339W WO02061103A1 WO 2002061103 A1 WO2002061103 A1 WO 2002061103A1 FR 0200339 W FR0200339 W FR 0200339W WO 02061103 A1 WO02061103 A1 WO 02061103A1
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- C12N7/00—Viruses; Bacteriophages; Compositions thereof; Preparation or purification thereof
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- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/85—Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
- C12N15/86—Viral vectors
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- C12N2740/00—Reverse transcribing RNA viruses
- C12N2740/00011—Details
- C12N2740/10011—Retroviridae
- C12N2740/13011—Gammaretrovirus, e.g. murine leukeamia virus
- C12N2740/13051—Methods of production or purification of viral material
- C12N2740/13052—Methods of production or purification of viral material relating to complementing cells and packaging systems for producing virus or viral particles
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- C12N2740/00—Reverse transcribing RNA viruses
- C12N2740/00011—Details
- C12N2740/10011—Retroviridae
- C12N2740/16011—Human Immunodeficiency Virus, HIV
- C12N2740/16051—Methods of production or purification of viral material
- C12N2740/16052—Methods of production or purification of viral material relating to complementing cells and packaging systems for producing virus or viral particles
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- C12N2840/00—Vectors comprising a special translation-regulating system
- C12N2840/20—Vectors comprising a special translation-regulating system translation of more than one cistron
- C12N2840/203—Vectors comprising a special translation-regulating system translation of more than one cistron having an IRES
Definitions
- the present invention relates to the field of biology, and more particularly to the field of virology.
- the invention relates to a method for obtaining retrovirus packaging cells which are transcomplementing and not permissive to infection by said retrovirus.
- the invention also relates to the use of retroviral vector for the implementation of said method of obtaining as well as a method of
- retroviral vectors can cycle through retroviral infection but are not able to emerge from the infected cell in the form of a viral particle because the genes for viral structure are absent.
- This technique especially used in gene therapy, consists in cotransfecting at the same time a plasmid carrying the structural genes and another plasmid containing the vector which one wishes to produce.
- the vectors are harvested over a period of 48 to 72 hours after which the culture is eliminated.
- Viral stocks are then produced which are frozen before use.
- this type of production can only be implemented for certain viral species which support freezing well and for which highly transfectable cell lines have been isolated which cannot encapsulate all types of vectors.
- the inventors have developed a process based on the phenomenon of "interference retroviral ”to quickly and surely eliminate parasitic cells from cell culture, the presence of which contributes to greatly reducing the efficiency of viral production.
- the term “viral interference phenomenon” is intended to denote the resistance of the packaging lines to infection by the vectors which they produce, since the retroviral envelope proteins produced by the cells block the cellular receptor necessary for the entry of the virus in the cell. The inventors have postulated that the cells which derive lose the expression of the genes of viral structure.
- the inventors have developed a system based on retroviral interference in which cells which express little or no viral structure genes can be eliminated from the culture.
- the basic principle is to use a retroviral vector to infect the cells of the packaging line.
- the cells which will have been infected will be those which will have lost the expression of the genes of viral structure. They can therefore be eliminated from the culture by various means which will be listed below.
- the present invention therefore proposes to provide a process for obtaining retrovirus packaging cells, trans-complementary non-permissive to infection by said retrovirus, characterized in that it comprises the steps of:
- retroviruses is intended to denote oncogenic and non-oncogenic viruses naturally present in nature which affect animals and humans, variants of its retroviruses originating from instability and from the intrinsic genetic variety or from rearrangement between retroviruses, as well as recombinant retroviruses obtained by genetic engineering.
- the fundamental characteristics of retroviruses are to have genetic information stored in the form of RNA and to have at the 3 'and 5' ends two untranslated sequences oriented in the same way (LTR, for "Long Terminal Repeat"), as well as to use reverse transcriptase during their multiplication.
- the genetic RNA of a retrovirus contains sequences of genes acting by trans coding for viral proteins: (i) a structural protein GAG which associates with RNA in the body of the viral particle; (ii) POL reverse transcriptase which catalyzes the synthesis of complementary DNA ( C DNA); and (iii) an ENV envelope glycoprotein which is located in the bilayer of the particles and which binds the virus to the surface of host cells during infection.
- Retroviruses replicate by copying their RNA genome by reverse-transcription into double-stranded intermediate DNA using reverse-transcriptase. Intermediate DNA is integrated into the chromosomal DNA of the host cell. Integrated retroviral DNA is called a "provirus".
- the provirus serves as a matrix for the synthesis of RNA chains for the formation of infectious viral particles.
- the retroviruses according to the invention are used as retroviral vectors by replacing, in the proviral form of the retrovirus, one or more endogenous genes acting in trans with a sequence or a recombinant gene of interest. Genes acting in trans include the GAG, POL and ENV genes necessary for the production of intact virions. Recombinant retroviruses, deficient in GAG, POL and ENV “transactivator” genes, cannot therefore synthesize essential proteins for their replication and are therefore defective for replication.
- the term “defective virus” is intended to denote a virus which has lost any of the functions which it requires to ensure its perpetuation, either in its proviral form or in a vegetative form. Such recombinant retroviruses defective for replication are propagated using packaging cell lines or by cotransfection with “helper” viruses.
- retroviral vector or recombinant proviral DNA sequence within the meaning of the present invention is intended to denote a retroviral nucleotide sequence having conserved the essential CIS sequences, that is to say the LTRs for the control of transcription and integration, the sequence or sequences necessary for encapsidation, the PBS sequence (“Primer binding site”) necessary for viral replication, and which is deleted from at least one viral gene GAG, POL, ENV, optionally replaced by at least a DNA sequence of interest.
- retroviruses A taxonomy of retroviruses has been described by Coffin JM, Hughes SH, armus HE (EDS.), Retroviruses, Cold Spring Harbor Laboratory Press (1997), appendix 2, pages 757-775.
- a non-exhaustive list of retroviruses according to the invention is given below: Avian Leukosis Virus (ALV), Rous Sarcoma Virus (RSV), Rous-Associated Virus (RAV), Fujinami Sarcoma Virus (FuSV), Avian Myelocytoma Avian Erythroblastosis Virus (AEV), S13 virus (MH2)
- C10 Avian Myeloblastosis-Erythoblastosis Virus E26
- E26 Avian Myelocytoma MC29
- MC29 Avian Retrovirus
- RPL30 Rous-Associated Virus-0 (RAV-0), Avian Sarcoma Virus
- ASV42 Avian Retrovirus
- ASV31 Mouse Mammary Tumor Virus
- MMTV Gross Murine Leukemia Virus
- Gross MLV Graffi Murine Leukemia Virus
- FR-MLV Friend Murine Leukemia Virus
- RadLV Spleen Necrosis Virus
- Mo-MLV Moloney Murine Leukemia Virus
- Ha-MSV Harvey Murine Sarcoma Virus
- Feline Leukemia Virus Feline Leukemia Virus
- Fe-LV Spleen Focus-Forming Virus
- FB-MSV Moloney Murine Sarcoma Virus
- Mo-MSV Avian
- Reticuloendotheliosis Virus REV
- Kirsten Murine Sarcoma Virus Ki-MSV
- Baboon Endogenous Virus BaEV
- Ab-MLV Abelson Murine Leukemia Virus
- SSV Snyder-Theilen Féline Sarcoma Virus
- ST-FeSV Snyder-Theilen Féline Sarcoma Virus
- Murine Sarcoma virus 3611 (MSV3611), Hardy-Zuckerman Feline Sarcoma Virus (HZ4FeSV), Mouse Myeloproliferative Leukemia Virus, Mason-Pfizer Monkey-Type Virus (MPMV), Jaagsiekte virus, Bovine Leukemia Virus (BLV), Human T-Cell Leukemia Virus -1 (HTLV-1), Human T-Cell Leukemia Virus-2 (HTLV-2), Equine Infectious Anemia Virus (EIAV), Visnavirus, Caprine Arthrisis-Encephalitis Virus (CAEV), Bovine
- BIV Human Immunodeficiency Virus- 1 (HIV-1), Simian Immunodeficiency Virus (SIV), Human Immunodeficiency Virus-2 (HIV-2), Feline Immunodeficiency Virus (FIV), Human Foamy Virus (HFV), Simian Foamy Virus (SFV), Walleye Dermal Sarcoma virus (WDSV).
- the retrovirus according to the invention is the spleen necrosis virus (SNV).
- SNV spleen necrosis virus
- the proviral DNA and the retroviral vector according to the invention also derives from the SNV.
- the SNV genome is for example available in the form of a plasmid (PpblO1) under the number ATCC 45012.
- retroviruses, retroviral vector, proviral DNA according to the invention are either amphotropic, to allow their use in different species or cell types, or ecotropic.
- the present invention is more particularly intended for the use of retroviral vectors and the corresponding packaging cells.
- packaging line within the meaning of the present invention, is meant a cell line which contains all or part of one or more retroviral genomes integrated or not in the cell genome and which supply the gene sequences acting in trans necessary for the production intact virions.
- a recombinant proviral DNA sequence containing a DNA sequence of interest introduced into an encapsidation cell line by transfection or infection are then transcribed into RNA and encapsulated into infectious virions containing the sequence of interest; such infectious virions being unable to synthesize the proteins GAG, POL, ENV to carry out the packaging of viral RNA in particles capable of infecting other cells, the resulting infectious retroviral vectors can therefore infect other cells and integrate the recombinant proviral DNA sequence of interest into the cellular DNA of a host cell, but they cannot replicate.
- non-permissive means a cell which does not allow the virus to enter said cell, thus not allowing the virus to multiply and reproduce new viruses.
- trans-complementant is intended to denote the packaging cells which express in a transient or permanent, inducible or constitutive manner, at least one retroviral transactivating gene GAG, POL, ENV whose expression product is necessary for the assembly of the retrovirus in the cell.
- transfection is intended to denote any experimental technique consisting in causing a nucleotide sequence to penetrate into a eukaryotic cell where the transfection techniques are known to those skilled in the art. Mention may be made, in a non-exhaustive manner, of calcium phosphate precipitation, electroporation, lipofection, thermal shock, the use of cationic polymers such as DEAE-dextran, polybrene, polyethylene glycol.
- infection is meant the transfer of genetic material from one cell to another via a virus.
- said retroviral vector is introduced into packaging cells by retroviral infection.
- the packaging line according to the present invention can be derived from cells of any animal or plant species.
- these cells are derived from murine cells, monkey cells, avian cells, human cells.
- murine packaging cells mention should be made of cells derived from (i) NIH 3T3 cells, and their derived cells such as, for example, ATCC CRL 9078, ATCC CRL 10686 cells, (ii) COS cells and their derived cells. , (iii) 293 cells and their derived cells such as ATCC CRL 11270, ATCC CRL 11268, ATCC CRL 11269, ATCC CRL 11554.
- human packaging cells mention should be made of human fibrosarcoma cells, in particular HT cells. 1080 and their derived cells.
- the packaging cells according to the present invention have receptors on their cell surface which participate in the entry of retroviruses into the cell. Preferably, these receptors bind a wide spectrum of viruses, thus allowing the packaging cells according to the invention to be infected with a broad spectrum of viruses, in particular of retroviruses. Conversely, it may be advantageous to have packaging cells whose cellular receptors for the virus are specific for a single viral species.
- the method according to the invention is characterized in that said selection is carried out by eliminating, from said population of packaging cells, the cells expressing said "marker” gene.
- said “marker” gene is a “suicide” gene whose cellular expression causes the death of the cells expressing said “suicide” gene.
- suicide gene according to the present invention is meant a nucleic acid coding for a protein product, characterized in that this product causes cell death by itself, or in the presence of another compound, such as for example a prodrug.
- the method according to the invention is characterized in that it also comprises the step of administering a prodrug in the culture medium in a sufficient amount so that said prodrug after being metabolized by the expression product of said “suicide” gene is converted into a compound toxic to said cell expressing said gene “ marker pen ".
- the “suicide” gene according to the present invention corresponds inter alia to the genes used by a person skilled in the art in molecular biology to carry out a negative cell selection (for review, see US Pat. No. 5,627,059).
- Said "suicide" gene according to the invention preferably codes for a protein chosen from the group consisting of kinases, bacterial cytosine deaminase, hypoxanthine phosphoribosyl transferase (HPRT) and guanine phosphoribosyl transferase (GpT) ). More particularly, said kinase is chosen from the group consisting of thymidine kinase from the Herpes simplex virus and thymidine kinase from the varicella virus (“Varicella zoster virus”).
- the pro-drug is chosen from the group consisting of acyclovir, ganciclovir, FIAU (1- (2-deoxy-2-fluoro) - ⁇ -D-arabinofuranosyl) 5-iodouracil or their derivatives
- the pro-drug is chosen from the group consisting of 6-methoxypurine arabinoside or one of
- the prodrug is chosen from the group composed of 5-fluorocytosine and its derivatives which are converted into 5-fluorouracil, a compound highly toxic for When the protein expressed from said suicide gene is HPRT (Hypo
- the pro-drug is 6-thio-xanthine and its derivatives.
- the suicide gene according to the present invention codes for a protein product which by itself causes cell death, the said protein product can be a toxin, such as the diphtheria toxin or the castor toxin.
- the method according to the invention is characterized in that said “marker” gene is a “killer” gene which codes for a pro-apoptotic protein whose cellular expression causes the death of cells expressing said “marker” gene.
- the term “pro-apoptotic proteins” is intended to denote the proteins which intervene in apoptosis or promote apoptosis.
- pro-apoptotic proteins mention should be made of the proteins of the Bcl2 family, and more particularly the BIK proteins
- Bcl2-Interacting Protein BAX (Oltvai et al. 1993), BAK (Chittenden et al. 1995; Kiefer et al. 1995) and BID ("BH3-Interacting Domain Death Agonist”) (Wang et al. 1996 ).
- BAK Choittenden et al. 1995; Kiefer et al. 1995
- BID BH3-Interacting Domain Death Agonist
- pro-apoptotic proteins mention should also be made of caspases, the protein AIF (“Apoptosis-Inducing Factor”) (Susin et al. 1999) and proteins of the tumor necrotizing factor family (TNF, “Tumor Necrosing Factor ”), and more particularly TNF itself (Old 1985), the protein FASL (“ FAS-Ligand ”) (Takahashi et al. 1994).
- the method according to the invention is characterized in that said selection is carried out by sorting from said population of packaging cells the cells which express and which do not express said gene "marker ".
- said marker gene is a “reporter” gene whose cellular expression makes it possible to sort the cells expressing said selection gene.
- reporter gene is intended to denote a gene which allows the cells comprising this gene to be detected specifically, that is to say to be distinguished from other cells which do not carry this marker gene.
- Said “reporter” gene codes for a protein preferably chosen from the group composed of auto-fluorescent proteins, such as the green fluorescence protein (GFP, for “Green Fluorescence Protein”), the red fluorescence protein ( RFP for "Red Fluorescence Protein”), as well as the variants of these fluorescence proteins obtained by mutagenesis to generate a fluorescence of different color.
- GFP green Fluorescence protein
- RFP red Fluorescence Protein
- Said “reporter” gene also codes for any enzyme detectable fluorescently, phosphorescently, or visible by a histochemical process on living cells.
- ⁇ -galactosidase ⁇ -GAL
- ⁇ -GUS ⁇ -glucoronidase
- alkaline phosphatase in particular placental alkaline phosphatase (PLAP)
- PLAP placental alkaline phosphatase
- ADH alcoholic dehydrogenase of Drosophila
- luciferase especially
- the present invention also relates to the method according to the invention characterized in that it further comprises the step of sorting the population of packaging cells.
- this sorting can be carried out by means of a cell sorter.
- the method according to the invention is characterized in that said retroviral vector further comprises a second selection gene.
- selection gene is intended to denote a gene which allows the cells which possess it to be specifically selected for or against the presence of a corresponding selective agent.
- an antibiotic resistance gene can be used as a positive selection marker gene which allows a host cell to be positively selected in the presence of the corresponding antibiotic.
- positive and negative markers are known to those skilled in the art (for review see US Patent 5,627,059). This selection gene can be found either inside or outside the packable retroviral genome.
- the second selection gene When the second selection gene is located inside the encapsidable retroviral genome, that is to say between the sequences LTR5 'and LTR3', the latter may be present in the form of a gene entity distinct from the gene marker pen.
- said second selection gene is operably linked with DNA sequences making it possible to control the expression of said second gene.
- sequences known to those skilled in the art, correspond in particular to promoter sequences, optionally to activator sequences, to transcription termination signals to splicing sequences.
- said second selection gene can constitute a gene for fusion with the marker gene. Said fusion gene is then operably linked with DNA sequences making it possible to control the expression of said fusion gene.
- said second gene for selection of said retroviral vector is located outside the encapsidable retroviral genome.
- the localization of said selection gene outside the encapsidable retroviral genome makes it possible to increase the maximum level of clones producing retroviral particles independently of the rate of drift of the packaging line.
- Said second selection gene according to the invention is preferably chosen from the antibiotic resistance genes.
- the antibiotics neomycin, tetracycline, ampicillin, kanamycin, phleomycin, bleomycin, hygromycin, chloramphenicol, carbenicillin, geneticin should be mentioned in a non-exhaustive manner.
- the resistance genes corresponding to these antibiotics are known to those skilled in the art; for example, the bacterial aminoglycoside phosphotransferase (APH) gene makes cells resistant to the presence of the antibiotic neomycin in the culture medium.
- the second selection gene can also be selected from the HisD gene, the corresponding selective agent being histidinol.
- the second selection gene can also be selected from the guanine phosphoribosyl transferase (GpT) gene, the corresponding selective agent being xanthine.
- the second selection gene can also be selected from the hypoxanthine phosphoribosyl transferase (HPRT) gene, the corresponding selective agent being hypoxanthine.
- the second selection gene is selected from the group of genes coding for metabolic enzymes for which there are mutant packaging cells which lack them, for example the gene for dihydrofolate reductase for dhfr cells, "the. thymidine kinase gene for TK ⁇ cells.
- the transformants are then selected for their ability to grow in selective medium such as hypoxanthine-aminopterin medium thymidine (HAT) for example.
- HAT hypoxanthine-aminopterin medium thymidine
- XGPRT XGPRT
- CAD carboxyl phosphate synthase, aspartate transcarbamylase, dihydroorotase), adenosine deaminase, asparagine synthetase.
- the retroviral vector according to the invention may also comprise at least one third gene located inside the encapsidable retroviral genome.
- Said third may be present in the form of a gene entity distinct from the marker gene or constitute a gene for fusion with said marker gene.
- Said third gene encoding an enzyme may be particularly useful in estimating the titer of the retroviral preparation.
- the method according to the invention is characterized in that said retroviral vector further comprises a gene coding for an enzyme located inside the encapsidable retroviral genome.
- the method further comprises a step of titrating the viral particles by assaying the activity of said enzyme.
- Enzyme activity assay techniques are widely known to those skilled in the art of biochemistry. These techniques preferably use photometric, fluorimetric, isotopic, immunological, radioimmunological, manometric assays (for review, see P. Kamoun “Apparatus and Methods in Biochemistry", 3rd Ed. Medicine-Sciences Flammarion).
- the enzymes capable of being used in the process according to the invention are known to a person skilled in the art; they are preferably enzymes which catalyze the transformation of a product into a substrate whose quantitative and qualitative determination is easy and quick.
- alcohol dehydrogenase and in particular alcohol dehydrogenase from Drosophila, lacticodehydrogenase, transaminases, such as glutamate-pyruvate transaminase.
- the invention also relates to the use of retroviral vector for the implementation of a process for obtaining cells for the packaging of non-permissive trans-complementary retroviruses, characterized in that said vector comprises at least one marker gene such as as previously defined and chosen from suicide genes, killer genes, “reporter” genes located between the sequences LTR5 'and LTR3'.
- said vector comprises a second selection gene and / or a third gene.
- the invention also relates to a process for preparing a non-replicating recombinant retrovirus, characterized in that said process comprises the following steps:
- Said retroviral vector used in the above preparation process comprises at least one sequence or a gene of interest.
- it comprises at least one positive or negative selection gene; preferably said selection gene is located outside the encapsidable retroviral genome.
- it is a positive selection gene for antibiotic resistance; in this case said culture of step iii) is carried out in the presence of said antibiotic.
- the invention also relates to the non-replicating recombinant retrovirus obtained by the above preparation process.
- the retrovirus is prepared in packaging cells selected by the production process according to the invention which uses retroviruses of the same viral species. However, the use of amphotropic lines allows the use of different viral species.
- the marker gene, and / or the selection gene, and / or said third gene and / or the gene sequence of interest are operably linked to elements controlling their expression.
- elements controlling expression is meant to denote all the DNA sequences involved in the regulation of gene expression, that is to say the minimal promoter sequence, the upstream sequences, the activator sequences
- “Silencers”) “insulator” sequences, splicing sequences.
- the elements controlling expression allow either a constitutive, ubiquitous, inducible expression, specific for a cell type ("tissue-specific”) or specific for a stage of development.
- tissue-specific expression elements are preferably chosen from promoters which make it possible to obtain a specific, and preferably strong, expression in one or more cell (s), tissue (s), cell type (s) ) or organ (s) of the organism according to the invention.
- ubiquitous expression elements or ubiquitous promoters are chosen from promoters which make it possible to obtain expression, preferably strong, in the whole, or at least in a large proportion of organs, or of tissues of the organism. according to the invention.
- ubiquitous promoters mention may be made of the cytomegalovirus (CMV) promoter (Schmidt et al., 1990) and the interferon-inducible promoter (Mxl) (Hug et al., 1998) early and immediate promoter of the human cytomegalovirus (HCMV-IE) (Boshart et al., 1987), the beta-actin promoter (Gunning et al. 1984), the histone H4 promoter (Guild et al.
- CMV cytomegalovirus
- Mxl interferon-inducible promoter
- the murine metallothionein promoter (Me Ivor et al., 1987), rat growth hormone promoter (Miller et al., 1985), human adenosine deaminase promoter (Hantzapoulos et al., 1989) , the HSV thymidine kinase promoter (Tabin et al., 1982), the activator (“enhancer”) of the alpha-1 antitrypsin gene (Peng et al., 1988), the immunoglobulin promoter / enhancer (Blankenstein et al.
- the early or late promoters of SV40 the major late promoter of adenovirus 2 or other viral promoters derived from polyoma virus, bovine papilloma virus or other retroviruses or other adenoviruses.
- These promoters may or may not be heterologous to the organism, may or may not be naturally present in the genome of the organism. Thus, they can be of viral origin.
- the marker qene and / or the selection gene and / or said third gene and / or the gene sequence of interest may be devoid of promoters or of expression elements and be placed under the control of a promoter or of endogenous expression elements of the retrovirus, such as for example the expression elements present in the LTRs. It is obvious that, depending on the desired result, those skilled in the art will choose and adapt the elements for regulating gene expression.
- the retroviral vector according to the invention contains several genes to be expressed, it may be advantageous to use splicing signals, or to use IRES (Internai Ribosome Entry site) sequences; IRES sequences make it possible to translate several proteins from a single polycistronic RNA.
- IRES Internai Ribosome Entry site
- the recombinant DNA technologies used for the construction of the retroviral vector according to the invention are those known and commonly used by those skilled in the art. Standard techniques are used for cloning, DNA isolation, amplification, and purification; enzymatic reactions involving DNA ligase, DNA polymerase, restriction endonucleases are carried out according to the manufacturer's recommendations. These and other techniques are generally performed according to Sambrook et al. (1989).
- the gene of interest codes for a gene product which has a particular function, for example which acts as a marker to produce a detectable product or, preferably, it is a therapeutic gene whose product is active against infection or disease.
- the therapeutic genes can code for example for an antisense RNA, a ribozyme or a peptide or a protein such as a trans-dominant negative mutant of a target protein, a toxin, a conditional toxin, an antigen which induces an antibody or which induces T-helper or cytotoxic cells, a single chain antibody or a tumor suppressor protein.
- the gene of interest can also code for killer proteins as defined above.
- one or more genes of interest may be present.
- the present invention also relates to a viral vector, in particular a retroviral vector, characterized in that it contains at least one selection gene outside the packaging genome.
- a retroviral vector increases the percentage of cell clones producing recombinant viruses obtained after transfection of the packaging cells compared to the rate obtained with a viral vector whose selection gene is located in the packaging viral genome, and this, whatever the rate of drift of the packaging line.
- the selection gene is located outside of the LTR5 'and LTR3' sequences.
- the viral vector may also contain in its packaging genome one or more genes chosen from the group of genes of interest, marker genes, selection genes, so-called third genes according to the invention.
- Such a retroviral vector can be used to produce non-replicative retroviral particles for use in basic research but also for the preparation of a medicament intended for preventive and curative therapies.
- a retroviral vector can be prepared according to conventional techniques of recombinant DNA available to those skilled in the art. It is obvious that this type of vector can be used for the preparation of various packaged viruses such as, for example, adenoviruses and adenovirus-associated.
- Figure 1 Schematic representation of the SAITK vector (SVN-ADH-IRES-TK:: Sh Ble)
- LTR Long Terminal repeat
- ADH nucleotide sequence coding for Drosophila alcohol dehydrogenase
- IRES 1518 internal ribosome binding site
- TK Sh Ble: gene for fusion between the herpes simplex virus thymidine kinase and the phleomycin resistance gene.
- Figure 2 Schematic representation of the SASS BLE vector (SNV-ADH / SV40-Sh Ble)
- restriction sites Sspl at position 3 and Nde I at position 2728 are indicated; LTR: "Long terminal repea t"; ADH: nucleotide sequence coding for Drosophila alcohol dehydrogenase; Prom SV40: promoter of SV40; Sh Ble: phleomycin resistance gene; Poly A-SV40: polyadenylation sequence of SV40.
- the QT6 and DSH-134G cell lines are grown under standard conditions. Briefly, the cells of the QT6 cell line derived from Japanese quail (Moscovici et al., 1977) are cultured in Ham's F10 medium (GIBCO-BRL-Life Technologies) supplemented with 10% tryptose phosphate broth (GIBCO- BRL-Life Technologies), 5% newborn calf serum (EUROBIO), 1% chicken serum (GIBCO-BRL-Life Technologies) and 1% penicillin-streptomycin (10,000 units per ml, GIBCO-BRL - Life Technologies).
- the DSH-134G packaging cell line derived from canine osteosarcoma (Martinez and Dornburg, 1995) is cultured in a DMEM medium containing 1 g / 1 D-glucose, 3.6% NaHC0 3 supplemented with 6% fetal calf serum (EUROBIO), 1% glutamine (GIBCO-BRL- Life Technologies) and 1% penicillin-streptomycin (10 000 units / ml, GIBCO-BRL-Life Technologies).
- the cells are seeded the previous day in a six-well plate at the rate of 10 5 cells per well (COSTAR). Plasmids
- the plasmids are introduced into QT6 or D17 cells in which the constructs are expressed under the control of the CMV promoter (cytomegalovirus).
- the polyclonal or clonal cell populations are selected in the presence of 5 ⁇ g / ml of phleomycin (CAYLA).
- the SNV constructs are transfected into DSH 134G cells and selected with 50 ⁇ g / ml of phleomycin. When the colonies reach approximately one hundred cells, the cell clones contained in the culture dishes are scraped off and aspirated under a microscope with a pipette type P200 of GILSON®; cells are transferred to 48-well culture dishes (COSTAR) and then screened for the presence of retroviral particles.
- QT6 cells are seeded in six-well plates, 24 hours before infection (2 x 10 5 cells / well) and infected with serial dilutions (decimal) of cell media not containing virus. Two days later, the infected cells are washed twice with PBS supplemented with Ca 2+ and Mg 2+ , then fixed for five minutes with 2% formaldehyde (MERCK-CLEVENOT) / 0.1% glutaraldehyde (SERVA), then washed with PBS supplemented with Ca 2+ and Mg 2+ and used in an ADH test.
- 2% formaldehyde MERCK-CLEVENOT
- SERVA glutaraldehyde
- the viruses are harvested from almost confluent packaging cells in a monolayer 20 to 24 hours after changing the medium.
- the harvested medium is centrifuged at 5,000 rpm for ten minutes and the virus is then titrated on QT6 cells. Briefly, the day before the titration, 5 x 10 5 QT6 cells are seeded on six-well plates. The cells are infected with decimal dilutions of the viral supernatant and then returned to the incubator for an additional 48 hours. The cells are then fixed and stained for the ADH test.
- ADH test Two days later, the infected cells are washed twice with PBS supplemented with Ca 2+ ions and
- the cells are covered with a minimum volume of the staining solution which consists for 1 ml in 900 ⁇ l of 0.15M Tris pH 8.5, 70 ⁇ l of a solution of Nicotina ide Adenine Dinucleotide (NAD) at 10 mg / ml in water (ICN), 22 ⁇ l of 2-butanol (PROLABO), 11 ⁇ l of phenazine methosulfate at 0.5 mg / ml of distilled water (SIGMA) and 10 ⁇ l of TetraNitroBlue Tetrazolium (TNBT ) (JANSEN CHEMICA), 10 mg in 700 ⁇ l of dimethylformamide + 300 ⁇ l of water); the cells are then incubated in the dark for six to twelve hours at room temperature.
- a minimum volume of the staining solution which consists for 1 ml in 900 ⁇ l of 0.15M Tris pH 8.5, 70 ⁇ l of a solution of Nicotina ide Adenine
- SNV-TK Sh ble vector
- the vector is constructed using an SNV-based vector containing the Sh ble:: NLSlacZ gene (Jaffredo et al., 2000). The vector is digested with HindIII; the cohesive ends are made blunt. The linear vector is then digested with Ncol and the vector fragment is gel-purified.
- the TK :: Sh ble fragment is removed from the put 102 vector (CAYLA) by digestion with SalI. The ends of the TK :: Sh ble fragment are made blunt then this fragment is digested with Nco I.
- the 1.55 kb fragment is then purified on gel and then ligated into the SNV vector prepared as described above.
- the vector is constructed using an SNV-based vector containing the Sh ble :: lacZ fragment of the SNV gene.
- the vector is then digested with Ncol and Xbal.
- IRES 1518 is inserted using the restriction enzymes Xbal and Ncol.
- the vector is constructed using an SNV-IRES-Sh ble :: lacZ fragment opened by Xbal.
- the 0.8 kb ADH gene is removed from the TA cloning vector (Gautier et al., 1996) by digestion with Spel / Xbal then purified on gel and finally ligated into the vector SNV-IRES-Sh ble :: lacZ.
- SNV-ADH-IRES-TK Sh ble vector (SAITK vector)
- the SNV-ADH-IRES-TK:: Sh ble vector, also called SAITK is constructed using the previously digested SNV-Tk :: Sh ble fragment by Ncol / Pmll enzymes.
- the 1.5 kb ADH-IRES gene is removed from the SNV-ADH-IRES- Sh ble :: lacZ vector by Ncol / Smal digestion and then purified on gel and finally ligated into the vector SNV-TK:: Sh ble.
- NLS lacZ are seeded at low density in duplicate in six-well dishes. The cells are infected twice overnight at one day apart using 1 ml of SAITK viral supernatant (2 ⁇ 1.5 10 6 AFU) in the presence of 2 ⁇ g / ml of polybrene. Two days later, the DNA expression is revealed on one of the six-well dishes while the second dish receives 100 ⁇ Mole of acyclovir per well. Selection with acyclovir is complete after eight days. The culture medium is then removed and replaced with fresh medium without acyclovir.
- EXAMPLE 2 CHARACTERIZATION OF THE DERIVATIVE 2.1. Drift estimation The more a packaging line drifts, the less retroviruses it produces and the more it becomes infectious with the retroviruses it is supposed to produce. This phenomenon, which can be highlighted during transfections of vectors equipped with a selection gene, is responsible for obtaining a number of producer clones recovered which may drop below 1% (the 99% of clones not mostly resulting from virus infected cells from the few transfected producer cells). It therefore seems important, when one wants to work clonally, to know the speed of drift of the line used.
- the inventors infected the packaging line DSH134G with a retrovirus produced by this line and provided with a reporter gene. 48 hours after infection, it appears that the drift is proportional to the number of infections found.
- PV viral particle
- DSH-PL DSH 134G packaging line transfected with an SNV-phleomycin-LacZ vector
- DSH-CXL cells which correspond to the DSH-134G line transfected with an SNV-lacZ vector, seeded at low density, are infected with the SAITK vector and then selected by Phleomycin. Resistant clones appear and cells are tested for their ability to produce viral particles. No clone produced viral particles. This demonstrates that permissive cells have lost their production capacity.
- Suicide vector
- the inventors have thought of eliminating these infectious cells which do not produce viruses by infecting them with an SNV vector carrying a suicide gene.
- the inventors have built a three-way vector called SAITK
- ADH Drosophila Alcohol DeHydrogenase
- TK Thymidine Kinase
- ShBle Phleomycin
- This SAITK vector was produced by transfection into the packaging line DSH-134G.
- the inventors have recovered two of the 93 producer clones tested.
- DSH 134G cells having never been transfected with a retroviral vector
- a retroviral vector previously seeded at very low density in three wells (six-well plate). 48 hours later, the cells are treated with Acyclovir phosphoryl (ZOVIRAX®) at a concentration of 100 ⁇ Molar for ten days.
- ZOVIRAX® Acyclovir phosphoryl
- the cell culture is amplified.
- checks for the presence of ADH cells positive or resistant to phleomycin were carried out. They turned out to be negative.
- 3.2. Elimination of non-interfering cells DSH 134G cells are seeded at low density in duplicates in six-well plates. Then, the cells are infected for two consecutive nights with 1 ml of SAITK supernatant (2 ⁇ 1.5 ⁇ 10 6 PV / ml) in the presence of 4 ⁇ g of polybrene in a final volume of 2 ml.
- the presence of viral particles is checked by revealing the DHA on one of the plates and on the other plate the cells are treated with 100 ⁇ Mol of Acyclovir (ZOVIRAX).
- ZOVIRAX 100 ⁇ Mol of Acyclovir
- the surviving DSH-134Gs are tested for their capacity for packaging after transfection of SNV vectors.
- the inventors obtain a maximum of 6% of producer clones. After treatment, the results go up to 85%.
- EXAMPLE 4 CREATION OF A NEW MULTIFUNCTIONAL VECTOR: SASSHBLE (SNV, ADH, SV 40, Phleomycin)
- the transfection results obtained show that the vectors containing a selection gene inside the encapsidable viral genome induce a number of selected clones much greater than the number of clones actually transfected. This phenomenon is particularly true when the packaging line has drifted.
- Two vectors can be co-transfected, one containing the genome encapsidable and the other, non-encapsidable carrying a selection gene, the cells which have received the selection plasmid are recovered but among them, only part received the encapsidable vector.
- the number of clones to be tested therefore remains, in both cases, significant.
- the inventors have hypothesized that the majority of non-producing clones originate from the infection of non-interfering cells by viruses produced by transfected cells.
- the inventors have imagined dissociating the viral genome from the selection gene while preserving the two on the same plasmid (FIG. 2).
- the cells After transfection into DSH-134G, the cells are selected by phleomycin, then the titration is carried out as soon as the cells are ready.
- the results go in the same direction (even if the percentage of producer clones before treatment is more than four times greater), the percentage after treatment is of the same order of magnitude and reaches 79% with a rate interference from 22 to 95%.
- DSH-134G tend to lose their capacity to produce viral particles. Many of them then become permissive and can be infected with viruses of the same type.
- the treatment of DSH-134G with the SAITK-Acyclovir system makes it possible to eliminate the majority of the cells which were permissive and therefore non-productive. This treatment must be prior to transfection. It allowed the inventors to obtain between 79 and 85% of producer clones.
- the use of a vector such as SASSHBLE makes it possible to obtain, after transfection, the maximum percentage of producer clones available whatever the rate of drift of the packaging line.
- the vector SAITK can be substituted for a vector SNV-GFP and, after infection, subject the cells to sorting with FACS, in order to allow the line to be enriched more quickly. encapsidation in interfering cells and avoid treatment with Alcyclovir.
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Abstract
Description
PROCEDE D ' OBTENTION DE CELLULES D ' ENCAPSIDATION PRODUCTRICES DE RETROVIRUS PAR ELIMINATION DES CELLULES INFECTABLES PAR LE RETROVIRUS PRODUITPROCESS FOR OBTAINING RETROVIRUS-PRODUCING ENCAPSIDATION CELLS BY ELIMINATING INFECTIBLE CELLS BY THE RETROVIRUS PRODUCED
La présente invention concerne le domaine de la biologie, et plus particulièrement le domaine de la virologie. L'invention se rapporte à un procédé d'obtention 5 de cellules d'encapsidation de retrovirus qui sont transcomplémentantes et non permissives à l'infection par ledit retrovirus. L'invention concerne également l'utilisation de vecteur retroviral pour la mise en œuvre dudit procédé d' obtention ainsi qu' un procédé deThe present invention relates to the field of biology, and more particularly to the field of virology. The invention relates to a method for obtaining retrovirus packaging cells which are transcomplementing and not permissive to infection by said retrovirus. The invention also relates to the use of retroviral vector for the implementation of said method of obtaining as well as a method of
10 préparation de retrovirus recombinant non replicatif par transfection de cellules d'encapsidation obtenues par ledit procédé d'obtention.Preparation of a non-replicative recombinant retrovirus by transfection of packaging cells obtained by said production process.
L'utilisation de vecteurs rétroviraux non-réplicati s s'élargit de plus en plus tant en recherche fondamentaleThe use of non-replicating retroviral vectors is growing more and more in basic research
15 qu'en clinique. La production de vecteurs non-réplicatifs nécessite l'utilisation de lignées cellulaires appelées « transcomplémentantes ». Ces lignées ont été mises au point pour produire l'ensemble des protéines de structure nécessaires pour assembler un retrovirus mais ne produisent15 only in the clinic. The production of non-replicating vectors requires the use of cell lines called "transcomplementing". These lines were developed to produce all of the structural proteins necessary to assemble a retrovirus but do not produce
20 pas elles-mêmes de virus de manière spontanée. La mise au point de ces lignées est généralement longue et fastidieuse et fait appel à de nombreuses étapes de biologie moléculaire et de culture cellulaire. Lorsque l'on introduit, par transfection dans ces lignées, un génomeThey do not spontaneously virus themselves. The development of these lines is generally long and tedious and involves many steps in molecular biology and cell culture. When we introduce, by transfection into these lines, a genome
25 viral dont les gènes de structure ont été remplacés par des gènes d'intérêt, on obtient la production de particules virales qui portent les gènes en question. Ces vecteurs rétroviraux peuvent effectuer un cycle d' infection rétrovirale mais ne sont pas capables de ressortir de la cellule infectée sous forme de particule virale car les gènes de structure virale sont absents.25 viral whose structural genes have been replaced by genes of interest, one obtains the production of viral particles which carry the genes in question. These retroviral vectors can cycle through retroviral infection but are not able to emerge from the infected cell in the form of a viral particle because the genes for viral structure are absent.
L'un des problèmes les plus fréquemment rencontrés dans l'utilisation de ces lignées est la perte progressive de la capacité à produire le virus et la difficulté à obtenir des clones cellulaires produisant de grandes quantités de virus. Cette « dérive » se produit dans les lignées transcomplémentantes naïves comme dans les cellules productrices. Ce phénomène, bien connu des utilisateurs, nécessite de sous-cloner plus ou moins régulièrement les cellules et de les tester pour isoler des clones possédant des caractéristiques plus favorables. Ces contraintes rencontrées dans tous les types d'utilisation prennent du temps et sont un frein à l'utilisation des vecteurs. Pour éviter cela, il est généralement recommandé d'utiliser des stocks viraux provenant de passages précoces. Mais il est parfois difficile pour les laboratoires d'avoir accès à de telles lignées cellulaires ayant un faible nombre de passages en culture. Certains auteurs ont imaginé produire ces vecteurs de manière transitoire. Cette technique, surtout utilisée en thérapie génique, consiste à cotransfecter à la fois un plasmide portant les gènes de structure et un autre plasmide contenant le vecteur que l'on souhaite produire. Les vecteurs sont récoltés sur une période de 48 à 72 heures après quoi la culture est éliminée. On réalise alors des stocks viraux qui sont congelés avant utilisation. Néanmoins, ce type de production ne peut être mis en œuvre que pour certaines espèces virales qui supportent bien la congélation et pour lesquelles ont été isolées des lignées cellulaires hautement transfectables qui ne peuvent pas encapsider tous les types de vecteurs.One of the most common problems encountered with the use of these lines is the progressive loss of the ability to produce the virus and the difficulty in obtaining cell clones producing large amounts of virus. This "drift" occurs in naive transcomplementing lines as in producer cells. This phenomenon, well known to users, requires more or less regular subcloning of the cells and testing them to isolate clones having more favorable characteristics. These constraints encountered in all types of use take time and are an obstacle to the use of vectors. To avoid this, it is generally recommended to use viral stocks from early passages. However, it is sometimes difficult for laboratories to have access to such cell lines having a low number of culture passages. Some authors have imagined producing these vectors transiently. This technique, especially used in gene therapy, consists in cotransfecting at the same time a plasmid carrying the structural genes and another plasmid containing the vector which one wishes to produce. The vectors are harvested over a period of 48 to 72 hours after which the culture is eliminated. Viral stocks are then produced which are frozen before use. However, this type of production can only be implemented for certain viral species which support freezing well and for which highly transfectable cell lines have been isolated which cannot encapsulate all types of vectors.
Pour pallier les inconvénients de l'utilisation des espèces rétrovirales en culture, les inventeurs ont développé un procédé basé sur le phénomène d' « interférence rétrovirale » pour éliminer rapidement et sûrement de la culture cellulaire les cellules parasites dont la présence contribue à diminuer fortement l'efficacité de la production virale. Par phénomène d'interférence virale, on entend désigner la résistance des lignées d'encapsidation à l'infection par les vecteurs qu'elles produisent, car les protéines d' enveloppe rétrovirale produites par les cellules bloquent le récepteur cellulaire nécessaire à l'entrée du virus dans la cellule. Les inventeurs ont posé l'hypothèse que les cellules qui dérivaient perdaient l'expression des gènes de structure virale.To overcome the drawbacks of using retroviral species in culture, the inventors have developed a process based on the phenomenon of "interference retroviral ”to quickly and surely eliminate parasitic cells from cell culture, the presence of which contributes to greatly reducing the efficiency of viral production. The term “viral interference phenomenon” is intended to denote the resistance of the packaging lines to infection by the vectors which they produce, since the retroviral envelope proteins produced by the cells block the cellular receptor necessary for the entry of the virus in the cell. The inventors have postulated that the cells which derive lose the expression of the genes of viral structure.
Les inventeurs ont mis au point un système basé sur l'interférence rétrovirale dans lequel les cellules qui expriment peu ou pas de gènes de structure virale peuvent être éliminés de la culture. Le principe de base est d'utiliser un vecteur retroviral pour infecter les cellules de la lignée d'encapsidation. Les cellules qui auront été infectées seront celles qui auront perdu l'expression des gènes de structure virale. On peut donc les éliminer de la culture par différents moyens qui seront énumérés ci-après.The inventors have developed a system based on retroviral interference in which cells which express little or no viral structure genes can be eliminated from the culture. The basic principle is to use a retroviral vector to infect the cells of the packaging line. The cells which will have been infected will be those which will have lost the expression of the genes of viral structure. They can therefore be eliminated from the culture by various means which will be listed below.
La présente invention se propose donc de fournir un procédé d'obtention de cellules d'encapsidation de retrovirus, trans-complémentantes non-permissives à l'infection par ledit retrovirus, caractérisé en ce qu'il comporte les étapes de :The present invention therefore proposes to provide a process for obtaining retrovirus packaging cells, trans-complementary non-permissive to infection by said retrovirus, characterized in that it comprises the steps of:
(i) culture d'une population des dites cellules d'encapsidation ;(i) culturing a population of said packaging cells;
(ii) introduction par infection rétrovirale dans les dites cellules cultivées en (i) d'un vecteur retroviral comprenant au moins un gène « marqueur » compris dans le génome retroviral encapsidable ;(ii) introduction by retroviral infection into the said cells cultivated in (i) of a retroviral vector comprising at least one “marker” gene included in the encapsidable retroviral genome;
(iii) sélection des dites cellules n'exprimant pas ledit gène « marqueur ». Au sens de la présente invention, on entend désigner par retrovirus les virus oncogènes et non oncogènes présents naturellement dans la nature qui affectent les animaux et l'homme, les variants de ses retrovirus issus de l'instabilité et de la variété génétique intrinsèque ou de réarrangement entre retrovirus, ainsi que des retrovirus recombinants obtenus par génie génétique.(iii) selection of said cells which do not express said “marker” gene. For the purposes of the present invention, the term “retroviruses” is intended to denote oncogenic and non-oncogenic viruses naturally present in nature which affect animals and humans, variants of its retroviruses originating from instability and from the intrinsic genetic variety or from rearrangement between retroviruses, as well as recombinant retroviruses obtained by genetic engineering.
Les caractères fondamentaux des retrovirus sont d' avoir une information génétique stockée sous forme d'ARN et de posséder aux extrémités 3' et 5' deux séquences non traduites orientées de la même manière (LTR, pour « Long Terminal Repeat ») , ainsi que d'utiliser la reverse- transcriptase au cours de leur multiplication. L'ARN géno ique d'un retrovirus contient des séquences de gènes agissant en trans codant pour des protéines virales : (i) une protéine structurale GAG qui s'associe avec l'ARN dans le corps de la particule virale ; (ii) la reverse- transcriptase POL qui catalyse la synthèse de l'ADN complémentaire (ADNC) ; et (iii) une glycoprotéine d'enveloppe ENV qui se situe dans la bicouche des particules et qui lie le virus à la surface des cellules hôte lors de l'infection. La réplication du retrovirus est régulée par des éléments agissant en cis, tel que le promoteur pour la transcription de l'ADN proviral, et d'autres séquences nucléotidiques nécessaires à la réplication virale. Les éléments agissant en cis sont présents dans ou à côté des LTR. Les retrovirus se répliquent en copiant leur génome ARN par reverse- transcription en un ADN intermédiaire double-brin en utilisant la reverse-transcriptase. L'ADN intermédiaire est intégré dans l'ADN chromosomique de la cellule hôte. L'ADN retroviral intégré est appelé « provirus ». Le provirus sert de matrice pour la synthèse des chaînes ARN pour la formation des particules virales infectieuses. Les retrovirus selon l'invention sont utilisés comme vecteurs rétroviraux en remplaçant dans la forme provirale du retrovirus un ou plusieurs gènes endogènes agissant en trans par une séquence ou un gène recombinant d' intérêt . Les gènes agissant en trans incluent les gènes GAG, POL et ENV nécessaires a la production de virions intacts. Les retrovirus recombinants, déficients en gènes « trans- activateurs » GAG, POL et ENV, ne peuvent donc pas synthétiser les protéines essentielles pour leur réplication et sont de ce fait défectifs pour la réplication. Par virus défectif, on entend désigner un virus ayant perdu l'une quelconque des fonctions qui lui sont nécessaires pour assurer sa perpétuation, soit sous sa forme provirale, soit sous forme végétative. De tels retrovirus recombinants défectifs pour la réplication sont propagés en utilisant des lignées cellulaires d'encapsidation ou en réalisant une cotransfection avec des virus « helper ».The fundamental characteristics of retroviruses are to have genetic information stored in the form of RNA and to have at the 3 'and 5' ends two untranslated sequences oriented in the same way (LTR, for "Long Terminal Repeat"), as well as to use reverse transcriptase during their multiplication. The genetic RNA of a retrovirus contains sequences of genes acting by trans coding for viral proteins: (i) a structural protein GAG which associates with RNA in the body of the viral particle; (ii) POL reverse transcriptase which catalyzes the synthesis of complementary DNA ( C DNA); and (iii) an ENV envelope glycoprotein which is located in the bilayer of the particles and which binds the virus to the surface of host cells during infection. Replication of the retrovirus is regulated by cis-acting elements, such as the promoter for transcription of proviral DNA, and other nucleotide sequences necessary for viral replication. The elements acting in cis are present in or next to the LTRs. Retroviruses replicate by copying their RNA genome by reverse-transcription into double-stranded intermediate DNA using reverse-transcriptase. Intermediate DNA is integrated into the chromosomal DNA of the host cell. Integrated retroviral DNA is called a "provirus". The provirus serves as a matrix for the synthesis of RNA chains for the formation of infectious viral particles. The retroviruses according to the invention are used as retroviral vectors by replacing, in the proviral form of the retrovirus, one or more endogenous genes acting in trans with a sequence or a recombinant gene of interest. Genes acting in trans include the GAG, POL and ENV genes necessary for the production of intact virions. Recombinant retroviruses, deficient in GAG, POL and ENV “transactivator” genes, cannot therefore synthesize essential proteins for their replication and are therefore defective for replication. The term “defective virus” is intended to denote a virus which has lost any of the functions which it requires to ensure its perpetuation, either in its proviral form or in a vegetative form. Such recombinant retroviruses defective for replication are propagated using packaging cell lines or by cotransfection with “helper” viruses.
Par vecteur retroviral ou séquence d'ADN proviral recombinant au sens de la présente invention, on entend désigner une séquence nucléotidique rétrovirale ayant conservé les séquences CIS indispensables, c'est-à-dire les LTR pour le contrôle de la transcription et de l'intégration, la ou les séquences nécessaires pour 1' encapsidation, la séquence PBS (« Primer binding site ») nécessaire pour la réplication virale, et qui est délétée d'au moins un gène viral GAG, POL, ENV, facultativement remplacé par au moins une séquence d'ADN d'intérêt.The term “retroviral vector or recombinant proviral DNA sequence within the meaning of the present invention” is intended to denote a retroviral nucleotide sequence having conserved the essential CIS sequences, that is to say the LTRs for the control of transcription and integration, the sequence or sequences necessary for encapsidation, the PBS sequence (“Primer binding site”) necessary for viral replication, and which is deleted from at least one viral gene GAG, POL, ENV, optionally replaced by at least a DNA sequence of interest.
Une taxonomie des retrovirus a été décrite par Coffin J.M., Hughes S. H., armus H.E. (EDS.), Retroviruses, Cold Spring Harbor Laboratory Press (1997) , appendix 2, pages 757-775. Une liste non exhaustive de retrovirus selon l'invention est donnée ci-après : Avian Leukosis Virus (ALV) , Rous Sarcoma Virus (RSV) , Rous-Associated Virus (RAV) , Fujinami Sarcoma Virus (FuSV) , Avian Myelocytoma Virus (MH2 ) , Avian Erythroblastosis Virus (AEV) , S13 AvianA taxonomy of retroviruses has been described by Coffin JM, Hughes SH, armus HE (EDS.), Retroviruses, Cold Spring Harbor Laboratory Press (1997), appendix 2, pages 757-775. A non-exhaustive list of retroviruses according to the invention is given below: Avian Leukosis Virus (ALV), Rous Sarcoma Virus (RSV), Rous-Associated Virus (RAV), Fujinami Sarcoma Virus (FuSV), Avian Myelocytoma Avian Erythroblastosis Virus (AEV), S13 virus (MH2)
Erythroblastosis Virus (AEV) , Avian Myeloblastosis VirusErythroblastosis Virus (AEV), Avian Myeloblastosis Virus
(AMV) , Avian Retrovirus RPL12 , CT10 Avian Sarcoma Virus(AMV), Avian Retrovirus RPL12, CT10 Avian Sarcoma Virus
(CT10 ) , Avian Myeloblastosis-Erythoblastosis Virus E26 (E26 ) , Avian Myelocytoma MC29 (MC29 ) , Avian Retrovirus(CT10), Avian Myeloblastosis-Erythoblastosis Virus E26 (E26), Avian Myelocytoma MC29 (MC29), Avian Retrovirus
RPL30 , Rous-Associated Virus-0 (RAV-0 ) , Avian Sarcoma VirusRPL30, Rous-Associated Virus-0 (RAV-0), Avian Sarcoma Virus
(UR2 ) , Avian Retrovirus ( SKV) , Y73 Avian Sarcoma Virus(UR2), Avian Retrovirus (SKV), Y73 Avian Sarcoma Virus
(Y73 ) , Avian Sarcoma Virus 17 , Avian Retrovirus AS42(Y73), Avian Sarcoma Virus 17, Avian Retrovirus AS42
(ASV42 ) , Avian Retrovirus (ASV31 ) , Mouse Mammary Tumor Virus (MMTV) , Gross Murine Leukemia Virus (Gross MLV) , Graffi Murine Leukemia Virus ( GraffiMLV) , Friend Murine Leukemia Virus ( FR-MLV) , Radia tion Leukemia Virus (RadLV) , Spleen Necrosis Virus (SNV) , Moloney Murine Leukemia Virus (Mo-MLV) , Harvey Murine Sarcoma Virus (Ha-MSV) , Féline Leukemia Virus ( Fe-LV) , Spleen Focus-Forming Virus ( SFFV) , Finkel -Biskis-Jinkins Murine Sarcoma Virus ( FB-MSV) , Moloney Murine Sarcoma Virus (Mo-MSV) , Avian(ASV42), Avian Retrovirus (ASV31), Mouse Mammary Tumor Virus (MMTV), Gross Murine Leukemia Virus (Gross MLV), Graffi Murine Leukemia Virus (GraffiMLV), Friend Murine Leukemia Virus (FR-MLV), Radia tion Leukemia Virus ( RadLV), Spleen Necrosis Virus (SNV), Moloney Murine Leukemia Virus (Mo-MLV), Harvey Murine Sarcoma Virus (Ha-MSV), Feline Leukemia Virus (Fe-LV), Spleen Focus-Forming Virus (SFFV), Finkel - Biskis-Jinkins Murine Sarcoma Virus (FB-MSV), Moloney Murine Sarcoma Virus (Mo-MSV), Avian
Reticuloendotheliosis Virus (REV) , Kirsten Murine Sarcoma Virus (Ki-MSV) , Baboon Endogenous Virus (BaEV) , Abelson Murine Leukemia Virus (Ab-MLV) , Gibbon Ape Leukemia VirusReticuloendotheliosis Virus (REV), Kirsten Murine Sarcoma Virus (Ki-MSV), Baboon Endogenous Virus (BaEV), Abelson Murine Leukemia Virus (Ab-MLV), Gibbon Ape Leukemia Virus
(GALV) , Gardner-Arnstein Féline Sarcoma Virus (GA-FeSV) ,(GALV), Gardner-Arnstein Féline Sarcoma Virus (GA-FeSV),
McDonough Féline Sarcoma Virus ( SM-FeSV) , Simian SarcomaMcDonough Feline Sarcoma Virus (SM-FeSV), Simian Sarcoma
Virus ( SSV) , Snyder-Theilen Féline Sarcoma Virus ( ST-FeSV) ,Virus (SSV), Snyder-Theilen Féline Sarcoma Virus (ST-FeSV),
Murine Sarcoma virus 3611 (MSV3611 ) , Hardy-Zuckerman Féline Sarcoma Virus (HZ4FeSV) , Mouse Myeloproliferative Leukemia Virus, Mason-Pfizer Monkey-Type Virus (MPMV) , Jaagsiekte virus, Bovine Leukemia Virus (BLV) , Human T-Cell Leukemia Virus-1 (HTLV-1 ) , Human T-Cell Leukemia Virus-2 (HTLV-2 ) , Equine Infectious Anémia Virus (EIAV) , Visnavirus , Caprine Arthrisis-Encephalitis Virus (CAEV) , BovineMurine Sarcoma virus 3611 (MSV3611), Hardy-Zuckerman Feline Sarcoma Virus (HZ4FeSV), Mouse Myeloproliferative Leukemia Virus, Mason-Pfizer Monkey-Type Virus (MPMV), Jaagsiekte virus, Bovine Leukemia Virus (BLV), Human T-Cell Leukemia Virus -1 (HTLV-1), Human T-Cell Leukemia Virus-2 (HTLV-2), Equine Infectious Anemia Virus (EIAV), Visnavirus, Caprine Arthrisis-Encephalitis Virus (CAEV), Bovine
Immunodeficiency Virus (BIV) , Human Immunodeficiency Virus- 1 (HIV-1 ) , Simian Immunodeficiency Virus ( SIV) , Human Immunodeficiency Virus-2 (HIV-2 ) , Féline Immunodeficiency Virus (FIV) , Human Foamy Virus (HFV) , Simian Foamy Virus (SFV), Walleye Dermal Sarcoma virus (WDSV) .Immunodeficiency Virus (BIV), Human Immunodeficiency Virus- 1 (HIV-1), Simian Immunodeficiency Virus (SIV), Human Immunodeficiency Virus-2 (HIV-2), Feline Immunodeficiency Virus (FIV), Human Foamy Virus (HFV), Simian Foamy Virus (SFV), Walleye Dermal Sarcoma virus (WDSV).
Selon un mode préféré de réalisation, le retrovirus selon l'invention est le virus de la nécrose de la rate (SNV) . L'ADN proviral et le vecteur retroviral selon l'invention dérive également du SNV. Le génome SNV est par exemple disponible sous forme de plasmide (PpblOl) sous le numéro ATCC 45012.According to a preferred embodiment, the retrovirus according to the invention is the spleen necrosis virus (SNV). The proviral DNA and the retroviral vector according to the invention also derives from the SNV. The SNV genome is for example available in the form of a plasmid (PpblO1) under the number ATCC 45012.
Les retrovirus, vecteur retroviral, ADN proviral selon l'invention, sont soit amphotropes, pour permettre leur utilisation dans différentes espèces ou types cellulaires, soit écotropes .The retroviruses, retroviral vector, proviral DNA according to the invention, are either amphotropic, to allow their use in different species or cell types, or ecotropic.
Il convient de souligner que la présente invention est plus particulièrement destinée à l'utilisation de vecteur rétroviraux et aux cellules d'encapsidation correspondantes. Mais il entre également dans la portée de l'invention de fournir un procédé selon l'invention adapté aux autres types de vecteurs viraux, tels par exemple les vecteurs adénoviraux ou adénoviraux-associés, utilisés en recherche fondamentale, en génie génétique ou en thérapie génique, et qui utilisent des protéines de surface ou des récepteurs pour pénétrer dans la cellule hôte.It should be emphasized that the present invention is more particularly intended for the use of retroviral vectors and the corresponding packaging cells. However, it is also within the scope of the invention to provide a method according to the invention suitable for other types of viral vectors, such as for example adenoviral or adenoviral-associated vectors, used in fundamental research, in genetic engineering or in gene therapy , and which use surface proteins or receptors to enter the host cell.
Par lignée d'encapsidation, au sens de la présente invention, on entend désigner une lignée cellulaire qui contient tout ou partie de un ou plusieurs génomes rétroviraux intégrés ou non dans le génome cellulaire et qui fournissent les séquences géniques agissant en trans nécessaires à la production de virions intacts. Ainsi, une séquence d'ADN proviral recombinante contenant une séquence d'ADN d'intérêt, introduite dans une lignée cellulaire d'encapsidation par transfection ou infection sont ensuite transcrites en ARN et encapsidees en virions infectieux contenant la séquence d'intérêt ; de tels virions infectieux ne pouvant synthétiser les protéines GAG, POL, ENV pour réaliser l' encapsidation de l'ARN viral dans des particules susceptibles d'infecter d'autres cellules, les vecteurs rétroviraux infectieux résultant peuvent de ce fait infecter d' autres cellules et intégrer la séquence d'ADN proviral recombinante d'intérêt dans l'ADN cellulaire d'une cellule hôte mais ils ne peuvent se répliquer. On entend par « non-permissive » une cellule qui ne permet pas au virus de pénétrer dans ladite cellule, ne permettant pas ainsi au virus de se multiplier et de reproduire de nouveaux virus. La non-permissivité des cellules selon l'invention et une non-permissivité d'infection. Par « trans-complémentante », on entend désigner, les cellules d' encapsidation qui expriment de manière transitoire ou permamente, inductible ou constitutive, au moins un gène retroviral transactivateur GAG, POL, ENV dont le produit d'expression est nécessaire à l'assemblage du retrovirus dans la cellule.By packaging line, within the meaning of the present invention, is meant a cell line which contains all or part of one or more retroviral genomes integrated or not in the cell genome and which supply the gene sequences acting in trans necessary for the production intact virions. Thus, a recombinant proviral DNA sequence containing a DNA sequence of interest, introduced into an encapsidation cell line by transfection or infection are then transcribed into RNA and encapsulated into infectious virions containing the sequence of interest; such infectious virions being unable to synthesize the proteins GAG, POL, ENV to carry out the packaging of viral RNA in particles capable of infecting other cells, the resulting infectious retroviral vectors can therefore infect other cells and integrate the recombinant proviral DNA sequence of interest into the cellular DNA of a host cell, but they cannot replicate. The term “non-permissive” means a cell which does not allow the virus to enter said cell, thus not allowing the virus to multiply and reproduce new viruses. The non-permissiveness of the cells according to the invention and a non-permissiveness of infection. The term “trans-complementant” is intended to denote the packaging cells which express in a transient or permanent, inducible or constitutive manner, at least one retroviral transactivating gene GAG, POL, ENV whose expression product is necessary for the assembly of the retrovirus in the cell.
Par transfection, on entend désigner toute technique expérimentale consistant à faire pénétrer une séquence nucléotidique dans une cellule eucaryote où les techniques de transfection sont connues de l'homme du métier. On peut citer de manière non exhaustive la précipitation au phosphate de calcium, l' électroporation, la lipofection, le choc thermique, l'utilisation de polymères cationiques tels que le DEAE-dextran, le polybrène, le polyéthylène glycol . Par infection, on entend désigner le transfert de matériel génétique d'une cellule à une autre par l'intermédiaire d'un virus. Selon un mode préféré de réalisation, ledit vecteur retroviral est introduit dans les cellules d'encapsidation par infection rétrovirale. La lignée d'encapsidation selon la présente invention peut dériver de cellules de toutes espèces animales ou végétales. De préférence, ces cellules dérivent de cellules murines, de cellules de singe, de cellules aviaires, de cellules humaines. A titre d'exemple, une liste non exhaustive de cellules d'encapsidation de vecteurs rétroviraux est donnée ci-après ; cette liste n'est pas exhaustive et ne saurait en rien limiter la présente invention. Parmi les cellules d'encapsidation murines, il convient de citer les cellules dérivées des (i) cellules NIH 3T3, et leurs cellules dérivées telles par exemple les cellules ATCC CRL 9078, ATCC CRL 10686, (ii) les cellules COS et leurs cellules dérivées, (iii) les cellules 293 et leurs cellules dérivées telles que ATCC CRL 11270, ATCC CRL 11268, ATCC CRL 11269, ATCC CRL 11554. Parmi les cellules d'encapsidation humaines, il convient de citer les cellules de fibrosarcome humain notamment les cellules HT 1080 et leurs cellules dérivées. Les cellules d'encapsidation selon la présente invention présentent à leur surface cellulaire des récepteurs qui participent à l'entrée des retrovirus dans la cellule. De préférence, ces récepteurs lient un large spectre de virus, permettant ainsi aux cellules d'encapsidation selon l'invention d'être infectées par un large spectre de virus, notamment de retrovirus. A l'inverse, il peut être avantageux d'avoir des cellules d'encapsidation dont les récepteurs cellulaires au virus sont spécifiques d'une seule espèce virale.The term “transfection” is intended to denote any experimental technique consisting in causing a nucleotide sequence to penetrate into a eukaryotic cell where the transfection techniques are known to those skilled in the art. Mention may be made, in a non-exhaustive manner, of calcium phosphate precipitation, electroporation, lipofection, thermal shock, the use of cationic polymers such as DEAE-dextran, polybrene, polyethylene glycol. By infection is meant the transfer of genetic material from one cell to another via a virus. According to a preferred embodiment, said retroviral vector is introduced into packaging cells by retroviral infection. The packaging line according to the present invention can be derived from cells of any animal or plant species. Preferably, these cells are derived from murine cells, monkey cells, avian cells, human cells. By way of example, a non-exhaustive list of vector packaging cells retrovirals is given below; this list is not exhaustive and should in no way limit the present invention. Among the murine packaging cells, mention should be made of cells derived from (i) NIH 3T3 cells, and their derived cells such as, for example, ATCC CRL 9078, ATCC CRL 10686 cells, (ii) COS cells and their derived cells. , (iii) 293 cells and their derived cells such as ATCC CRL 11270, ATCC CRL 11268, ATCC CRL 11269, ATCC CRL 11554. Among human packaging cells, mention should be made of human fibrosarcoma cells, in particular HT cells. 1080 and their derived cells. The packaging cells according to the present invention have receptors on their cell surface which participate in the entry of retroviruses into the cell. Preferably, these receptors bind a wide spectrum of viruses, thus allowing the packaging cells according to the invention to be infected with a broad spectrum of viruses, in particular of retroviruses. Conversely, it may be advantageous to have packaging cells whose cellular receptors for the virus are specific for a single viral species.
Selon un premier mode de réalisation de l'invention, le procédé selon l'invention est caractérisé en ce que ladite sélection est effectuée en éliminant, de la dite population de cellules d'encapsidation, les cellules exprimant ledit gène « marqueur ». Selon ce premier mode de réalisation, ledit gène « marqueur » est un gène « suicide » dont l'expression cellulaire provoque la mort des cellules exprimant ledit gène « suicide ». Par gène suicide selon la présente invention, on entend désigner un acide nucléique codant pour un produit protéique, caractérisé en ce que ce produit provoque par lui-même la mort cellulaire, ou en présence d'un autre composé, tel par exemple une prodrogue. C'est la raison pour laquelle, le procédé selon l'invention est caractérisé en ce qu'il comporte en outre l'étape d'administrer dans le milieu de culture une prodrogue en quantité suffisante pour que ladite pro-drogue après avoir été métabolisée par le produit d'expression dudit gène « suicide » soit convertie en un composé toxique pour ladite cellule exprimant ledit gène « marqueur ». Le gène « suicide » selon la présente invention correspond entre autres aux gènes utilisés par l'homme du métier en biologie moléculaire pour réaliser une sélection négative de cellule (pour revue, voir brevet US 5 627 059) . Ledit gène « suicide » selon l'invention code de préférence pour une protéine choisie dans le groupe composé des kinases, de la cytosine déaminase bactérienne, de l' hypoxanthine- phosphoribosyl -transférase (HPRT) et de la guanine- phosphoribosyl-transférase (GpT) . Plus particulièrement, ladite kinase est choisie dans le groupe composé de la thymidine kinase du virus de l'Herpès simplex et de la thymidine kinase du virus de la varicelle (« Varicella zoster virus ») . De manière préférée, il s'agit de la thymidine kinase du virus de l'herpès simplex de type I ; lorsque la kinase utilisée est la thymidine kinase du virus de l'herpès simplex de type I, la pro-drogue est choisie dans le groupe composée de l'acyclovir, du ganciclovir, du FIAU (1- (2-déoxy-2-fluoro- β-D-arabinofuranosyl) 5-iodouracile ou de leurs dérivés. Lorsque la kinase utilisée est la thymidine kinase du virus de la varicelle, la pro-drogue est choisie dans le groupe composée de la 6-méthoxypurine arabinoside ou l'un de ses dérivés. Lorsque la protéine exprimée à partir dudit gène suicide est la cytosine déaminase bactérienne, la pro- drogue est choisie dans le groupe composée de la 5- fluorocytosine et ses dérivés qui sont convertit en 5- fluoro-uracile, composé hautement toxique pour la cellule. Lorsque la protéine exprimée à partir dudit gène suicide est HPRT (Hypoxanthine phosphoribosyl transférase, la pro- drogue est la 6-thio-guanine et ses dérivés. Lorsque la protéine exprimée à partir dudit gène suicide est la guanine-phosphoribosyl-transférase (GpT) la pro-drogue est la 6-thio-xanthine et ses dérivés. Lorsque le gène suicide selon la présente invention, code pour un produit protéique qui provoque par lui-même la mort cellulaire, le dit produit protéique peut être une toxine, telle que la toxine diphtérique ou la toxine du ricin.According to a first embodiment of the invention, the method according to the invention is characterized in that said selection is carried out by eliminating, from said population of packaging cells, the cells expressing said "marker" gene. According to this first embodiment, said “marker” gene is a “suicide” gene whose cellular expression causes the death of the cells expressing said “suicide” gene. By suicide gene according to the present invention is meant a nucleic acid coding for a protein product, characterized in that this product causes cell death by itself, or in the presence of another compound, such as for example a prodrug. This is the reason why, the method according to the invention is characterized in that it also comprises the step of administering a prodrug in the culture medium in a sufficient amount so that said prodrug after being metabolized by the expression product of said “suicide” gene is converted into a compound toxic to said cell expressing said gene “ marker pen ". The “suicide” gene according to the present invention corresponds inter alia to the genes used by a person skilled in the art in molecular biology to carry out a negative cell selection (for review, see US Pat. No. 5,627,059). Said "suicide" gene according to the invention preferably codes for a protein chosen from the group consisting of kinases, bacterial cytosine deaminase, hypoxanthine phosphoribosyl transferase (HPRT) and guanine phosphoribosyl transferase (GpT) ). More particularly, said kinase is chosen from the group consisting of thymidine kinase from the Herpes simplex virus and thymidine kinase from the varicella virus (“Varicella zoster virus”). Preferably, it is the thymidine kinase of the herpes simplex virus type I; when the kinase used is the herpes simplex virus type I thymidine kinase, the pro-drug is chosen from the group consisting of acyclovir, ganciclovir, FIAU (1- (2-deoxy-2-fluoro) - β-D-arabinofuranosyl) 5-iodouracil or their derivatives When the kinase used is the thymidine kinase of the chickenpox virus, the pro-drug is chosen from the group consisting of 6-methoxypurine arabinoside or one of When the protein expressed from said suicide gene is the bacterial cytosine deaminase, the prodrug is chosen from the group composed of 5-fluorocytosine and its derivatives which are converted into 5-fluorouracil, a compound highly toxic for When the protein expressed from said suicide gene is HPRT (Hypoxanthine phosphoribosyl transferase, the drug is 6-thio-guanine and its derivatives. When the protein expressed from said suicide gene is guanine phosphoribosyl transferase (GpT), the pro-drug is 6-thio-xanthine and its derivatives. When the suicide gene according to the present invention codes for a protein product which by itself causes cell death, the said protein product can be a toxin, such as the diphtheria toxin or the castor toxin.
Selon un second mode de réalisation de l'invention, le procédé selon l'invention est caractérisé en ce que ledit gène « marqueur » est un gène « tueur » qui code pour une protéine pro-apoptotique dont l'expression cellulaire provoque la mort des cellules exprimant ledit gène « marqueur ». On entend désigner par protéines pro- apoptotiques les protéines qui interviennent dans l'apoptose ou promeuvent l'apoptose. Parmi les protéines pro-apoptotiques, il convient de citer les protéines de la famille de Bcl2, et plus particulièrement les protéines BIKAccording to a second embodiment of the invention, the method according to the invention is characterized in that said “marker” gene is a “killer” gene which codes for a pro-apoptotic protein whose cellular expression causes the death of cells expressing said “marker” gene. The term “pro-apoptotic proteins” is intended to denote the proteins which intervene in apoptosis or promote apoptosis. Among the pro-apoptotic proteins, mention should be made of the proteins of the Bcl2 family, and more particularly the BIK proteins
(« Bcl2-Interacting Protein ») , BAX (Oltvai et al . 1993), BAK (Chittenden et al . 1995 ; Kiefer et al . 1995) et BID (« BH3-Interacting Domain Death Agonist ») (Wang et al . 1996) . Parmi les protéines pro-apoptotiques, il convient également de citer les caspases, la protéine AIF (« Apoptosis-Inducing Factor ») (Susin et al . 1999) et les protéines de la famille du facteur nécrosant des tumeurs (TNF, « Tumor Necrosing Factor ») , et plus particulièrement le TNF lui-même (Old 1985), la protéine FASL (« FAS- Ligand ») (Takahashi et al . 1994).("Bcl2-Interacting Protein"), BAX (Oltvai et al. 1993), BAK (Chittenden et al. 1995; Kiefer et al. 1995) and BID ("BH3-Interacting Domain Death Agonist") (Wang et al. 1996 ). Among the pro-apoptotic proteins, mention should also be made of caspases, the protein AIF (“Apoptosis-Inducing Factor”) (Susin et al. 1999) and proteins of the tumor necrotizing factor family (TNF, “Tumor Necrosing Factor ”), and more particularly TNF itself (Old 1985), the protein FASL (“ FAS-Ligand ”) (Takahashi et al. 1994).
Selon un troisième mode de réalisation de l'invention, le procédé selon l'invention est caractérisé en ce que ladite sélection est effectuée en triant dans ladite population de cellules d'encapsidation les cellules qui expriment et qui n'expriment pas ledit gène « marqueur ». Selon ce troisième mode de réalisation, le procédé est caractérisé en ce que ledit gène marqueur est un gène « reporter » dont l'expression cellulaire permet de trier les cellules exprimant ledit gène de sélection. On entend désigner par gène « reporter », un gène qui permet aux cellules comportant ce gène d' être détectées de manière spécifique, c'est-à-dire d'être distinguées des autres cellules qui ne portent pas ce gène marqueur. Ledit gène « reporter » selon l'invention code pour une protéine choisie de préférence dans le groupe composé des protéines auto-fluorescentes, telles que la protéine de fluorescence verte (GFP, pour « Green Fluorescence Protein ») , la protéine de fluorescence rouge (RFP pour « Red Fluorescence Protein » ) , ainsi que les variants de ces protéines de fluorescence obtenues par mutagenèse pour générer une fluorescence de couleur différente. Ledit gène « reporter » code également pour toute enzyme détectable de manière fluorescente, phosphorescente, ou visible par un procédé histochimique sur des cellules vivantes. De façon non exhaustive, il convient de citer la β-galactosidase (β- GAL) , la β-glucoronidase (β-GUS) , la phosphatase alcaline, notamment la phosphatase alcaline placentaire (PLAP) , la déshydrogénase alcoolique, notamment la déshydrogénase alcoolique de drosophile (ADH) , la luciférase, notamment laAccording to a third embodiment of the invention, the method according to the invention is characterized in that said selection is carried out by sorting from said population of packaging cells the cells which express and which do not express said gene "marker ". According to this third embodiment, the method is characterized in that said marker gene is a “reporter” gene whose cellular expression makes it possible to sort the cells expressing said selection gene. The term “reporter” gene is intended to denote a gene which allows the cells comprising this gene to be detected specifically, that is to say to be distinguished from other cells which do not carry this marker gene. Said “reporter” gene according to the invention codes for a protein preferably chosen from the group composed of auto-fluorescent proteins, such as the green fluorescence protein (GFP, for “Green Fluorescence Protein”), the red fluorescence protein ( RFP for "Red Fluorescence Protein"), as well as the variants of these fluorescence proteins obtained by mutagenesis to generate a fluorescence of different color. Said "reporter" gene also codes for any enzyme detectable fluorescently, phosphorescently, or visible by a histochemical process on living cells. Non-exhaustively, mention should be made of β-galactosidase (β-GAL), β-glucoronidase (β-GUS), alkaline phosphatase, in particular placental alkaline phosphatase (PLAP), alcoholic dehydrogenase, in particular alcoholic dehydrogenase of Drosophila (ADH), luciferase, especially
Firefly Luciférase , la chloramphénicol-acétyl-transférase (CAT) , l'hormone de croissance (GH) . Lorsque ledit gène marqueur est un gène « reporter », il est intéressant de trier la population de cellules d'encapsidation, au lieu d'éliminer certaines cellules de la culture. C'est la raison pour laquelle, la présente invention concerne également le procédé selon l'invention caractérisé en ce qu'il comporte en outre l'étape de trier la population de cellules d'encapsidation. A titre d'exemple non limitatif, ce tri peut être réalisé au moyen d'un trieur de cellulesFirefly Luciferase, chloramphenicol-acetyl transferase (CAT), growth hormone (GH). When said marker gene is a “reporter” gene, it is advantageous to sort the population of packaging cells, instead of eliminating certain cells from the culture. This is the reason why, the present invention also relates to the method according to the invention characterized in that it further comprises the step of sorting the population of packaging cells. By way of nonlimiting example, this sorting can be carried out by means of a cell sorter.
(FACS pour « Fluorescence Analysis Cell Sorter ») . Mais d' autres appareils ou technologies destinés à réaliser du tri cellulaire, connus de l'homme du métier peuvent être utilisés .(FACS for "Fluorescence Analysis Cell Sorter"). But other devices or technologies intended for carrying out cell sorting, known to a person skilled in the art, can be used.
Selon un autre mode de réalisation de l'invention, le procédé selon l'invention est caractérisé en ce que ledit vecteur retroviral comprend en outre un second gène de sélection. Par gène de sélection, on entend désigner un gène qui permet aux cellules qui le possèdent d'être sélectionnées spécifiquement pour ou contre la présence d'un agent sélectif correspondant. Pour illustrer ce propos, un gène de résistance aux antibiotiques peut être utilisé comme un gène marqueur de sélection positif qui permet à une cellule hôte d' être sélectionnée positivement en présence de l'antibiotique correspondant. Une variété de marqueurs positifs et négatifs sont connus de l'homme du métier (pour revue voir brevet US 5 627 059) . Ce gène de sélection peut se trouver soit à l'intérieur ou à l'extérieur du génome retroviral encapsidable . Lorsque le second gène de sélection se trouve à l'intérieur du génome retroviral encapsidable, c'est-à-dire entre les séquences LTR5' et LTR3' , celui-ci peut être présent sous la forme d'une entité génique distincte du gène marqueur. Dans ce cas, ledit second gène de sélection est lié de manière opérationnelle avec des séquences d'ADN permettant de contrôler l'expression dudit second gène. Ces séquences, connues de l'homme du métier, correspondent notamment aux séquences promotrices, facultativement aux séquences activatrices, aux signaux de terminaison de la transcription aux séquences d'épissage. Facultativement, ledit second gène de sélection peut constituer un gène de fusion avec le gène marqueur. Ledit gène de fusion est alors lié de manière opérationnelle avec des séquences d'ADN permettant de contrôler l'expression dudit gène de fusion. Selon un autre mode de réalisation de l'invention, ledit second gène de sélection dudit vecteur retroviral est situé à l'extérieur du génome retroviral encapsidable. Comme décrit dans les exemples ci-après, la localisation dudit gène de sélection à l'extérieur du génome retroviral encapsidable permet d'augmenter le taux maximal de clones producteurs de particules retrovirales indépendamment du taux de dérive de la lignée d'encapsidation. Ledit second gène de sélection selon l'invention est de préférence choisi parmi les gènes de résistance aux antibiotiques. Parmi les antibiotiques, il convient de citer de manière non exhaustive la néomycine, la tétracycline, 1' ampicilline, la kanamycine, la phléomycine, la bléomycine, l' hygromycine, le chloramphénicol, la carbénicilline, la généticine. Les gènes de résistance correspondant à ces antibiotiques sont connus de l'homme du métier ; à titre d'exemple, le gène de l' aminoglycoside phosphotransférase bactérienne (APH) rend les cellules résistantes à la présence de l'antibiotique néomycine dans le milieu de culture. Le second gène de sélection peut également être sélectionné parmi le gène HisD, l'agent sélectif correspondant étant l' histidinol . Le second gène de sélection peut également être sélectionné parmi le gène de la guanine-phosphoribosyl-transférase (GpT) , l'agent sélectif correspondant étant la xanthine . Le second gène de sélection peut également être sélectionné parmi le gène de 1' hypoxanthine-phosphoribosyl-transférase (HPRT), l'agent sélectif correspondant étant la l' hypoxanthine . Selon un autre mode de réalisation de l'invention, le second gène de sélection est sélectionné dans le groupe de gènes codant pour des enzymes du métabolisme pour lesquels on possède des cellules d'encapsidation mutantes qui en sont dépourvues, par exemple le gène de la dihydrofolate réductase pour les cellules dhfr", le .gène de la thymidine kinase pour les cellules TK~. Les transformants sont alors sélectionnés pour leur aptitude à se multiplier en milieu sélectif tel que le milieu hypoxanthine-aminoptérine- thymidine (HAT) par exemple. Ainsi, parmi les gènes codant pour des enzymes du métabolisme, il convient de citer de manière non exhaustive la thymidine kinase, la dihydrofolate réductase, l' hygromycine β-phospho- transférase, la xanthine-guanine phosphoribosyl transféraseAccording to another embodiment of the invention, the method according to the invention is characterized in that said retroviral vector further comprises a second selection gene. The term “selection gene” is intended to denote a gene which allows the cells which possess it to be specifically selected for or against the presence of a corresponding selective agent. To illustrate this, an antibiotic resistance gene can be used as a positive selection marker gene which allows a host cell to be positively selected in the presence of the corresponding antibiotic. A variety of positive and negative markers are known to those skilled in the art (for review see US Patent 5,627,059). This selection gene can be found either inside or outside the packable retroviral genome. When the second selection gene is located inside the encapsidable retroviral genome, that is to say between the sequences LTR5 'and LTR3', the latter may be present in the form of a gene entity distinct from the gene marker pen. In this case, said second selection gene is operably linked with DNA sequences making it possible to control the expression of said second gene. These sequences, known to those skilled in the art, correspond in particular to promoter sequences, optionally to activator sequences, to transcription termination signals to splicing sequences. Optionally, said second selection gene can constitute a gene for fusion with the marker gene. Said fusion gene is then operably linked with DNA sequences making it possible to control the expression of said fusion gene. According to another embodiment of the invention, said second gene for selection of said retroviral vector is located outside the encapsidable retroviral genome. As described in the examples below, the localization of said selection gene outside the encapsidable retroviral genome makes it possible to increase the maximum level of clones producing retroviral particles independently of the rate of drift of the packaging line. Said second selection gene according to the invention is preferably chosen from the antibiotic resistance genes. Among the antibiotics, neomycin, tetracycline, ampicillin, kanamycin, phleomycin, bleomycin, hygromycin, chloramphenicol, carbenicillin, geneticin should be mentioned in a non-exhaustive manner. The resistance genes corresponding to these antibiotics are known to those skilled in the art; for example, the bacterial aminoglycoside phosphotransferase (APH) gene makes cells resistant to the presence of the antibiotic neomycin in the culture medium. The second selection gene can also be selected from the HisD gene, the corresponding selective agent being histidinol. The second selection gene can also be selected from the guanine phosphoribosyl transferase (GpT) gene, the corresponding selective agent being xanthine. The second selection gene can also be selected from the hypoxanthine phosphoribosyl transferase (HPRT) gene, the corresponding selective agent being hypoxanthine. According to another embodiment of the invention, the second selection gene is selected from the group of genes coding for metabolic enzymes for which there are mutant packaging cells which lack them, for example the gene for dihydrofolate reductase for dhfr cells, "the. thymidine kinase gene for TK ~ cells. the transformants are then selected for their ability to grow in selective medium such as hypoxanthine-aminopterin medium thymidine (HAT) for example. Thus, among the genes coding for metabolic enzymes, it is worth mentioning in a non-exhaustive manner thymidine kinase, dihydrofolate reductase, hygromycin β-phospho-transferase, xanthine-guanine phosphoribosyl transferase
(XGPRT) , la CAD (carbamyl phosphate synthase, aspartate transcarbamylase, dihydroorotase) , l'adénosine déaminase, l'asparagine synthétase.(XGPRT), CAD (carbamyl phosphate synthase, aspartate transcarbamylase, dihydroorotase), adenosine deaminase, asparagine synthetase.
Il peut être également avantageux à ce que le vecteur retroviral selon l'invention comprenne en outre au moins un troisième gène situé à l'intérieur du génome retroviral encapsidable. Le dit troisième peut être présent sous la forme d'une entité génique distincte du gène marqueur ou constituer un gène de fusion avec le dit gène marqueur. Le dit troisième gène codant pour un enzyme peut être particulièrement utile pour estimer le titre de la préparation rétrovirale. C'est pourquoi le procédé selon l'invention est caractérisé en ce que ledit vecteur retroviral comprend en outre un gène codant pour un enzyme situé à l'intérieur du génome retroviral encapsidable. Selon ce mode particulier de réalisation de l'invention, le procédé comprend en outre une étape de titration des particules virales par dosage de l'activité de ladite enzyme. Les techniques de dosage d'activité enzymatique sont largement connues de l'homme du métier en biochimie. Ces techniques font appel de préférence à des dosages photométriques, fluorimétriques, isotopiques, immunologiques, radioimmunologiques, manométriques (pour revue, voir P. Kamoun « Appareils et Méthodes en Biochimie », 3éme Ed. Médecine-Sciences Flammarion) . Les enzymes susceptibles d'être mises en œuvre dans le procédé selon l'invention sont connues de l'homme du métier ; il s'agit de préférence d'enzymes qui catalysent la transformation d'un produit en un substrat dont la détermination quantitative et qualitative est aisée et rapide. Parmi les enzymes selon l'invention, il convient de citer de manière non exhaustive l'alcool déshydrogénase, et notamment l'alcool déshydrogénase de drosophile, lacticodéshydrogénase, les transaminases, telles que la transaminase glutamate-pyruvate .It may also be advantageous for the retroviral vector according to the invention to further comprise at least one third gene located inside the encapsidable retroviral genome. Said third may be present in the form of a gene entity distinct from the marker gene or constitute a gene for fusion with said marker gene. Said third gene encoding an enzyme may be particularly useful in estimating the titer of the retroviral preparation. This is why the method according to the invention is characterized in that said retroviral vector further comprises a gene coding for an enzyme located inside the encapsidable retroviral genome. According to this particular embodiment of the invention, the method further comprises a step of titrating the viral particles by assaying the activity of said enzyme. Enzyme activity assay techniques are widely known to those skilled in the art of biochemistry. These techniques preferably use photometric, fluorimetric, isotopic, immunological, radioimmunological, manometric assays (for review, see P. Kamoun "Apparatus and Methods in Biochemistry", 3rd Ed. Medicine-Sciences Flammarion). The enzymes capable of being used in the process according to the invention are known to a person skilled in the art; they are preferably enzymes which catalyze the transformation of a product into a substrate whose quantitative and qualitative determination is easy and quick. Among the enzymes according to the invention, non-exhaustive mention should be made of alcohol dehydrogenase, and in particular alcohol dehydrogenase from Drosophila, lacticodehydrogenase, transaminases, such as glutamate-pyruvate transaminase.
L'invention concerne également l'utilisation de vecteur retroviral pour la mise en œuvre d'un procédé d'obtention de cellules d' encapsidation de retrovirus trans- complémentantes non-permissives, caractérisée en ce que ledit vecteur comprend au moins un gène marqueur tel que précédemment défini et choisi parmi les gènes suicides, les gènes tueurs, les gènes « reporter » situé entre les séquences LTR5' et LTR3' . Facultativement, mais de manière préférée, ledit vecteur comprend un second gène de sélection et/ou undit troisième gène.The invention also relates to the use of retroviral vector for the implementation of a process for obtaining cells for the packaging of non-permissive trans-complementary retroviruses, characterized in that said vector comprises at least one marker gene such as as previously defined and chosen from suicide genes, killer genes, “reporter” genes located between the sequences LTR5 'and LTR3'. Optionally, but preferably, said vector comprises a second selection gene and / or a third gene.
L' invention concerne également un procédé de préparation de retrovirus recombinant non-réplicatif, caractérisé en ce que ledit procédé comprend les étapes suivantes :The invention also relates to a process for preparing a non-replicating recombinant retrovirus, characterized in that said process comprises the following steps:
(i) obtention de cellules d'encapsidation non- permissives trans-complémentantes par la mise en œuvre d'un procédé selon l'invention ;(i) obtaining trans-complementary non-permissive packaging cells by implementing a method according to the invention;
(ii) transfection dans les dites cellules obtenues en (i) d'un vecteur retroviral comprenant au moins le génome encapsidable dudit retrovirus recombinant ;(ii) transfection into said cells obtained in (i) of a retroviral vector comprising at least the encapsidable genome of said recombinant retrovirus;
(iii) culture des cellules ainsi transfectées dans des conditions permettant l'expression des protéines d' encapsidation ; (iv) récolte desdits retrovirus recombinants.(iii) culturing the cells thus transfected under conditions allowing the expression of the packaging proteins; (iv) harvesting of said recombinant retroviruses.
Selon un autre mode de réalisation de l'invention, il est possible d' introduire le génome encapsidable du retrovirus recombinant dans les cellules d' encapsidation par infection virale. Ledit vecteur retroviral mis en œuvre dans le procédé de préparation précédent comprend au moins une séquence ou un gène d'intérêt. Facultativement, il comprend au moins un gène de sélection positif ou négatif ; de préférence ledit gène de sélection est situé à l'extérieur du génome retroviral encapsidable. De manière plus préféré, il s'agit d'un gène de sélection positif de résistance à un antibiotique ; dans ce cas ladite culture de l'étape iii) est réalisée en présence dudit antibiotique. L'invention concerne également le retrovirus recombinant non-réplicatif obtenu par le procédé de préparation précédent. Le retrovirus est préparé dans des cellules d' encapsidation sélectionnées par le procédé d'obtention selon l'invention qui utilise des retrovirus de la même espèce virale. Néanmoins, l'utilisation de lignées amphotropiques permet d'utiliser des espèces virales différentes .According to another embodiment of the invention, it is possible to introduce the encapsidable genome of the recombinant retrovirus into the encapsidation cells by viral infection. Said retroviral vector used in the above preparation process comprises at least one sequence or a gene of interest. Optionally, it comprises at least one positive or negative selection gene; preferably said selection gene is located outside the encapsidable retroviral genome. More preferably, it is a positive selection gene for antibiotic resistance; in this case said culture of step iii) is carried out in the presence of said antibiotic. The invention also relates to the non-replicating recombinant retrovirus obtained by the above preparation process. The retrovirus is prepared in packaging cells selected by the production process according to the invention which uses retroviruses of the same viral species. However, the use of amphotropic lines allows the use of different viral species.
De manière générale, dans les vecteurs rétroviraux de la présente invention, le gène marqueur, et/ou le gène de sélection, et/ou ledit troisième gène et/ou la séquence génique d' intérêt sont liés de manière opérationnelle à des éléments contrôlant leur expression. Par éléments contrôlant l'expression, on entend désigner toutes les séquences d'ADN impliquées dans la régulation de l'expression génique, c'est-à-dire la séquence promotrice minimale, les séquences amonts, les séquences activatricesIn general, in the retroviral vectors of the present invention, the marker gene, and / or the selection gene, and / or said third gene and / or the gene sequence of interest are operably linked to elements controlling their expression. By elements controlling expression is meant to denote all the DNA sequences involved in the regulation of gene expression, that is to say the minimal promoter sequence, the upstream sequences, the activator sequences
(« enhancers ») , éventuellement les séquences inhibitrices("Enhancers"), possibly the inhibitory sequences
(« silencers ») , les séquences « insulator », les séquences d'épissage. Les éléments contrôlant l'expression permettent soit une expression constitutive, ubiquitaire, inductible, spécifique d'un type cellulaire (« tissu-spécifique ») ou spécifique d'une étape du développement.(“Silencers”), “insulator” sequences, splicing sequences. The elements controlling expression allow either a constitutive, ubiquitous, inducible expression, specific for a cell type ("tissue-specific") or specific for a stage of development.
L'article de Metzger et Feil (1999) donne à titre d'exemple non limitatif (cf. tableau page 471) une liste de promoteurs cellulaires tissus-spécifiques susceptibles d'être utilisés pour diriger l'expression de séquences géniques dans différents tissus. Les éléments d'expression tissus-spécifiques sont de préférence choisis parmi les promoteurs qui permettent d'obtenir une expression spécifique, et de préférence forte, dans une ou plusieurs cellule (s), tissu (s), type (s) cellulaire (s) ou organe (s) de l'organisme selon l'invention.The article by Metzger and Feil (1999) gives by way of nonlimiting example (cf. table on page 471) a list of tissue-specific cellular promoters susceptible to be used to direct the expression of gene sequences in different tissues. The tissue-specific expression elements are preferably chosen from promoters which make it possible to obtain a specific, and preferably strong, expression in one or more cell (s), tissue (s), cell type (s) ) or organ (s) of the organism according to the invention.
Les éléments d'expression ubiquitaire ou promoteurs ubiquitaires sont choisis parmi les promoteurs qui permettent d'obtenir une expression, de préférence forte, dans l'ensemble, ou pour le moins dans une grande proportion d'organes, ou de tissus de l'organisme selon l'invention. A titre d'exemple non limitatif de promoteurs ubiquitaires, on peut citer le promoteur du cytomégalovirus (CMV) (Schmidt et al . , 1990) et le promoteur inductible par l'interféron (Mxl) (Hug et al . , 1998), le promoteur précoce et immédiat du cytomégalovirus humain (HCMV-IE) (Boshart et al . , 1987), le promoteur de la bêta-actine (Gunning et al . 1984), le promoteur de Histone H4 (Guild et al . 1988), le promoteur de la métallothionéine murine (Me Ivor et al . , 1987), le promoteur de l'hormone de croissance de rat (Miller et al . , 1985), le promoteur de l'adénosine déaminase humaine (Hantzapoulos et al . , 1989), le promoteur de la thymidine kinase de HSV (Tabin et al . , 1982), l'activateur (« enhancer ») du gène de l' antitrypsine alpha-1 (Peng et al . , 1988), le promoteur / enhancer des immunoglobulines (Blankenstein et al . 1988), les promoteurs précoces ou tardifs du SV40, le promoteur tardif majeur de l'adénovirus 2 ou d'autres promoteurs viraux dérivés du virus du polyome, du virus du papillome bovin ou d'autres retrovirus ou d'autres adénovirus . En outre, parmi les éléments d'expression, ou promoteurs selon l'invention, certains peuvent assurer un contrôle constitutif ou inductible de l'expression du gène d'intérêt. Parmi les éléments assurant une expression inductible, il convient de citer les promoteurs eucaryotiques inductibles par les métaux lourds (Mayo et al . , 1982 ; Brinster et al . , 1982 ; Seark et al . , 1985), par un choc thermique (Nover et al . , 1991), par les hormones (Lee et al . , 1981 ; Hynes et al . , 1981 ; Klock et al . , 1987 ; Israël et al . , 1989), par l'interféron (Hug et al . , 1998 ; Arnheiter et al . , 1990). Il convient également de citer les éléments d' expression procaryotiques inductibles tels que le système represseur Lac (LacR/opérateur/inducteur) d'E. coli (Hu et al . , 1987 ; Brown et al . , 1987 ; Labow et al . , 1990), le système de résistance à la tétracycline d' E. coli (Gossen et al . , 1992) (WO 94 04 672, EP 804 565).The ubiquitous expression elements or ubiquitous promoters are chosen from promoters which make it possible to obtain expression, preferably strong, in the whole, or at least in a large proportion of organs, or of tissues of the organism. according to the invention. By way of nonlimiting example of ubiquitous promoters, mention may be made of the cytomegalovirus (CMV) promoter (Schmidt et al., 1990) and the interferon-inducible promoter (Mxl) (Hug et al., 1998) early and immediate promoter of the human cytomegalovirus (HCMV-IE) (Boshart et al., 1987), the beta-actin promoter (Gunning et al. 1984), the histone H4 promoter (Guild et al. 1988), the murine metallothionein promoter (Me Ivor et al., 1987), rat growth hormone promoter (Miller et al., 1985), human adenosine deaminase promoter (Hantzapoulos et al., 1989) , the HSV thymidine kinase promoter (Tabin et al., 1982), the activator (“enhancer”) of the alpha-1 antitrypsin gene (Peng et al., 1988), the immunoglobulin promoter / enhancer (Blankenstein et al. 1988), the early or late promoters of SV40, the major late promoter of adenovirus 2 or other viral promoters derived from polyoma virus, bovine papilloma virus or other retroviruses or other adenoviruses. In addition, among the expression elements, or promoters according to the invention, some can provide constitutive or inducible control of the expression of the gene of interest. From elements ensuring an inducible expression, mention should be made of eukaryotic promoters inducible by heavy metals (Mayo et al., 1982; Brinster et al., 1982; Seark et al., 1985), by thermal shock (Nover et al. , 1991), by hormones (Lee et al., 1981; Hynes et al., 1981; Klock et al., 1987; Israël et al., 1989), by interferon (Hug et al., 1998; Arnheiter et al., 1990). Mention should also be made of the elements of inducible prokaryotic expression such as the Lac repressor system (LacR / operator / inducer) of E. coli (Hu et al., 1987; Brown et al., 1987; Labow et al., 1990), the tetracycline resistance system of E. coli (Gossen et al., 1992) (WO 94 04 672, EP 804,565).
Ces promoteurs peuvent être ou non hétérologues à l'organisme, être naturellement présents ou non dans le génome de l'organisme. Ainsi, ils peuvent être d'origine virale.These promoters may or may not be heterologous to the organism, may or may not be naturally present in the genome of the organism. Thus, they can be of viral origin.
Facultativement, le qène marqueur et/ou le gène de sélection et/ou ledit troisième gène et/ou la séquence génique d'intérêt peuvent être dépourvus de promoteurs ou d'éléments d'expression et être placés sous le contrôle d'un promoteur ou d'éléments d'expression endogènes du retrovirus, tels par exemple les éléments d'expression présents dans les LTR. Il est évident qu'en fonction du résultat recherché, l'homme du métier choisira et adaptera les éléments de régulation de l'expression des gènes. Ainsi, lorsque le vecteur retroviral selon l'invention contient plusieurs gènes à exprimer, il peut être intéressant d'utiliser des signaux d'épissage, ou d'utiliser des séquences IRES (Internai Ribosome Entry site) ; les séquences IRES permettent de réaliser la traduction de plusieurs protéines à partir d'un seul ARN polycistronique . Enfin, il peut être également intéressant d' avoir au moins un gène du retrovirus sous le contrôle d'un promoteur endogène, et au moins un autre gène sous le contrôle d'un promoteur hétérologue.Optionally, the marker qene and / or the selection gene and / or said third gene and / or the gene sequence of interest may be devoid of promoters or of expression elements and be placed under the control of a promoter or of endogenous expression elements of the retrovirus, such as for example the expression elements present in the LTRs. It is obvious that, depending on the desired result, those skilled in the art will choose and adapt the elements for regulating gene expression. Thus, when the retroviral vector according to the invention contains several genes to be expressed, it may be advantageous to use splicing signals, or to use IRES (Internai Ribosome Entry site) sequences; IRES sequences make it possible to translate several proteins from a single polycistronic RNA. Finally, it may also be interesting to have at least one retrovirus gene under control. an endogenous promoter, and at least one other gene under the control of a heterologous promoter.
A ce jour, de nombreuses constructions provirales ont été utilisées avec succès pour exprimer des gènes d' intérêt (pour revue, voir Coffin J.M. , Hughes S. H. and Varmus H.E., « Retrovirus », EDS. Cold Spring Harbor Laboratory Press. (1997), chapitre 9 « Development and applications of retroviral vectors », pages 437-474.To date, numerous proviral constructs have been successfully used to express genes of interest (for review, see Coffin JM, Hughes SH and Varmus HE, "Retrovirus", EDS. Cold Spring Harbor Laboratory Press. (1997), chapter 9 "Development and applications of retroviral vectors", pages 437-474.
Les technologies de l'ADN recombinant utilisées pour la construction du vecteur retroviral selon l'invention sont celles connues et communément utilisées par l'homme du métier. Les techniques standard sont utilisées pour le clonage, l'isolement de l'ADN, l'amplification, et la purification ; les réactions enzymatiques impliquant l'ADN ligase, l'ADN polymérase, les endonucléases de restriction sont effectuées selon les recommandations du fabricant. Ces techniques et les autres sont généralement réalisées selon Sambrook et al . (1989).The recombinant DNA technologies used for the construction of the retroviral vector according to the invention are those known and commonly used by those skilled in the art. Standard techniques are used for cloning, DNA isolation, amplification, and purification; enzymatic reactions involving DNA ligase, DNA polymerase, restriction endonucleases are carried out according to the manufacturer's recommendations. These and other techniques are generally performed according to Sambrook et al. (1989).
Le gène d'intérêt selon l'invention code pour un produit génique qui a une fonction particulière, par exemple qui agit comme un marqueur pour produire un produit détectable ou, de manière préférée, il s'agit d'un gène thérapeutique dont le produit est actif contre une infection ou une maladie. Ainsi les gènes thérapeutiques peuvent coder par exemple pour un ARN antisens, un ribozyme ou un peptide ou une protéine telle un mutant négatif trans-dominant d'une protéine cible, une toxine, une toxine conditionnelle, un antigène qui induit un anticorps ou qui induit les cellules T-Helper ou cytotoxiques, un anticorps simple chaîne ou une protéine suppresseur de tumeur. Le gène d'intérêt peut également coder pour des protéines tueuses telles que précédemment définies. Dans le vecteur retroviral selon l'invention, un ou plusieurs gènes d'intérêt peuvent être présents. Plus généralement, la présente invention porte également sur un vecteur viral, notamment retroviral, caractérisé en ce qu' il contient au moins un gène de sélection à l'extérieur du génome encapsidable. Un tel vecteur retroviral augmente le pourcentage de clones cellulaires producteurs de virus recombinants obtenus après transfection des cellules d' encapsidation comparé au taux obtenu avec un vecteur viral dont le gène de sélection se trouve situé dans le génome viral encapsidable, et ceci, quelque soit le taux de dérive de la lignée d'encapsidation. Lorsqu'il s'agit d'un vecteur retroviral selon l'invention, le gène de sélection est situé à l'extérieur des séquences LTR5' et LTR3' . Le vecteur viral peut en outre contenir dans son génome encapsidable un ou plusieurs gènes choisis dans le groupe des gènes d'intérêt, des gènes marqueurs, des gènes de sélection, des dits troisième gène selon l'invention. Ces gènes sont sous le contrôle d' éléments d' expression tels que précédemment définis. Un tel vecteur retroviral peut être utilisé pour produire des particules retrovirales non-réplicatives pour une utilisation en recherche fondamentale mais également pour la préparation d'un médicament destiné à des thérapies préventives et curatives. Un tel vecteur peut être préparé selon les techniques classiques de l'ADN recombinant à la disposition de l'homme du métier. Il est évident que ce type de vecteur peut être utilisé pour la préparation de différents virus encapsidés tels par exemple les adénovirus et les adénovirus-associés .The gene of interest according to the invention codes for a gene product which has a particular function, for example which acts as a marker to produce a detectable product or, preferably, it is a therapeutic gene whose product is active against infection or disease. Thus the therapeutic genes can code for example for an antisense RNA, a ribozyme or a peptide or a protein such as a trans-dominant negative mutant of a target protein, a toxin, a conditional toxin, an antigen which induces an antibody or which induces T-helper or cytotoxic cells, a single chain antibody or a tumor suppressor protein. The gene of interest can also code for killer proteins as defined above. In the retroviral vector according to the invention, one or more genes of interest may be present. More generally, the present invention also relates to a viral vector, in particular a retroviral vector, characterized in that it contains at least one selection gene outside the packaging genome. Such a retroviral vector increases the percentage of cell clones producing recombinant viruses obtained after transfection of the packaging cells compared to the rate obtained with a viral vector whose selection gene is located in the packaging viral genome, and this, whatever the rate of drift of the packaging line. When it is a retroviral vector according to the invention, the selection gene is located outside of the LTR5 'and LTR3' sequences. The viral vector may also contain in its packaging genome one or more genes chosen from the group of genes of interest, marker genes, selection genes, so-called third genes according to the invention. These genes are under the control of elements of expression as defined above. Such a retroviral vector can be used to produce non-replicative retroviral particles for use in basic research but also for the preparation of a medicament intended for preventive and curative therapies. Such a vector can be prepared according to conventional techniques of recombinant DNA available to those skilled in the art. It is obvious that this type of vector can be used for the preparation of various packaged viruses such as, for example, adenoviruses and adenovirus-associated.
D'autres caractéristiques et avantages de la présente invention seront mieux mis en évidence à la lecture des exemples suivants.Other characteristics and advantages of the present invention will be better demonstrated on reading the following examples.
Dans ces exemples, on se référera aux figures suivantes : Figure 1 : Représentation schématique du vecteur SAITK (SVN-ADH-IRES-TK: : Sh Ble)In these examples, reference is made to the following figures: Figure 1: Schematic representation of the SAITK vector (SVN-ADH-IRES-TK:: Sh Ble)
LTR : « Long Terminal repeat » ; ADH : séquence nucléotidique codant pour l'alcool déshydrogénase de drosophile ; IRES 1518 : site interne de liaison aux ribosomes ; TK::Sh Ble : gène de fusion entre la thymidine kinase du virus de l'herpès simplex et du gène de résistance à la phléomycine. Figure 2 : Représentation schématique du vecteur SASS BLE (SNV-ADH / SV40-Sh Ble)LTR: "Long Terminal repeat"; ADH: nucleotide sequence coding for Drosophila alcohol dehydrogenase; IRES 1518: internal ribosome binding site; TK :: Sh Ble: gene for fusion between the herpes simplex virus thymidine kinase and the phleomycin resistance gene. Figure 2: Schematic representation of the SASS BLE vector (SNV-ADH / SV40-Sh Ble)
Les sites de restriction Sspl en position 3 et Nde I en position 2728 sont indiqués ; LTR : « Long terminal repea t » ; ADH : séquence nucléotidique codant pour l'alcool déshydrogénase de drosophile ; Prom SV40 : promoteur du SV40 ; Sh Ble : gène de résistance à la phléomycine ; Poly A-SV40 : séquence de polyadénylation du SV40.The restriction sites Sspl at position 3 and Nde I at position 2728 are indicated; LTR: "Long terminal repea t"; ADH: nucleotide sequence coding for Drosophila alcohol dehydrogenase; Prom SV40: promoter of SV40; Sh Ble: phleomycin resistance gene; Poly A-SV40: polyadenylation sequence of SV40.
EXEMPLESEXAMPLES
EXEMPLE 1 : MATERIEL ET METHODESEXAMPLE 1: MATERIAL AND METHODS
1.1. Culture de cellules et tr.ansfection1.1. Cell culture and infection
Les lignées cellulaires QT6 et DSH-134G sont cultivées dans des conditions standard. Brièvement, les cellules de la lignée cellulaire QT6 dérivée de la caille japonaise (Moscovici et al . , 1977) sont cultivées dans un milieu Ham' s F10 (GIBCO-BRL-Life Technologies) complémenté avec 10% de tryptose phosphate broth (GIBCO-BRL-Life Technologies), 5% de sérum de veau nouveau-né (EUROBIO), 1% de sérum de poulet (GIBCO-BRL-Life Technologies) et 1% de pénicilline-streptomycine (10 000 unités par ml, GIBCO-BRL- Life Technologies). La lignée cellulaire d'encapsidation DSH-134G dérivée d' ostéosarcome canin (Martinez et Dornburg, 1995) est cultivée dans un milieu DMEM contenant 1 g/1 de D-glucose, 3,6% de NaHC03 supplémentés avec 6% de sérum de veau fœtal (EUROBIO) , 1% de glutamine (GIBCO-BRL- Life Technologies) et 1% de pénicilline-streptomycine (10 000 unités/ml, GIBCO-BRL-Life Technologies) . Pour les transfections, les cellules sont ensemencées le jour précédent dans une plaque à six puits à raison de 105 cellules par puits (COSTAR) . Les plasmidesThe QT6 and DSH-134G cell lines are grown under standard conditions. Briefly, the cells of the QT6 cell line derived from Japanese quail (Moscovici et al., 1977) are cultured in Ham's F10 medium (GIBCO-BRL-Life Technologies) supplemented with 10% tryptose phosphate broth (GIBCO- BRL-Life Technologies), 5% newborn calf serum (EUROBIO), 1% chicken serum (GIBCO-BRL-Life Technologies) and 1% penicillin-streptomycin (10,000 units per ml, GIBCO-BRL - Life Technologies). The DSH-134G packaging cell line derived from canine osteosarcoma (Martinez and Dornburg, 1995) is cultured in a DMEM medium containing 1 g / 1 D-glucose, 3.6% NaHC0 3 supplemented with 6% fetal calf serum (EUROBIO), 1% glutamine (GIBCO-BRL- Life Technologies) and 1% penicillin-streptomycin (10 000 units / ml, GIBCO-BRL-Life Technologies). For the transfections, the cells are seeded the previous day in a six-well plate at the rate of 10 5 cells per well (COSTAR). Plasmids
(habituellement 5 μg) sont introduits dans les cellules en utilisant le réactif Transfectam® (PROMEGA) selon les recommandations du fabricant, excepté que 250 μl de mélange de transfection sont utilisés par puits au lieu de 500 μl .(usually 5 μg) are introduced into the cells using the Transfectam® reagent (PROMEGA) according to the manufacturer's recommendations, except that 250 μl of transfection mixture are used per well instead of 500 μl.
Les plasmides sont introduits dans les cellules QT6 ou D17 dans lesquelles les constructions sont exprimées sous le contrôle du promoteur du CMV (cytomégalovirus) . Les populations cellulaires polyclonales ou clonales sont sélectionnées en présence de 5 μg/ml de phléomycine (CAYLA) .The plasmids are introduced into QT6 or D17 cells in which the constructs are expressed under the control of the CMV promoter (cytomegalovirus). The polyclonal or clonal cell populations are selected in the presence of 5 μg / ml of phleomycin (CAYLA).
Pour générer les lignées cellulaires produisant les vecteurs rétroviraux SNV-ADH-IRES-TK: : Sh ble, les constructions SNV sont transfectées dans les cellules DSH 134G et sélectionnées avec 50 μg/ml de phléomycine. Lorsque les colonies atteignent environ cent cellules, les clones cellulaires contenus dans les boîtes de culture sont grattés et aspirés sous microscope avec une pipette type P200 de GILSON® ; les cellules sont transférées dans des boîtes de culture à 48 puits (COSTAR) et ensuite criblées pour la présence de particules retrovirales.To generate the cell lines producing the SNV-ADH-IRES-TK retroviral vectors:: Sh ble, the SNV constructs are transfected into DSH 134G cells and selected with 50 μg / ml of phleomycin. When the colonies reach approximately one hundred cells, the cell clones contained in the culture dishes are scraped off and aspirated under a microscope with a pipette type P200 of GILSON®; cells are transferred to 48-well culture dishes (COSTAR) and then screened for the presence of retroviral particles.
Afin de déterminer le titre viral, les cellules QT6 sont ensemencées dans des plaques à six puits, 24 heures avant l'infection (2 x 105 cellules / puits) et infectées avec des dilutions en série (décimales) de milieux cellulaires ne comportant pas de virus. Deux jours plus tard, les cellules infectées sont lavées deux fois avec du PBS supplémenté avec Ca2+ et Mg2+, puis fixées pendant cinq minutes avec du formaldéhyde à 2% (MERCK-CLEVENOT) / glutaraldéhyde à 0,1% (SERVA) , puis lavées avec du PBS supplémenté en Ca2+ et Mg2+ et utilisées dans un test ADH. 1.2. Récolte des virus et infectionsIn order to determine the viral titer, QT6 cells are seeded in six-well plates, 24 hours before infection (2 x 10 5 cells / well) and infected with serial dilutions (decimal) of cell media not containing virus. Two days later, the infected cells are washed twice with PBS supplemented with Ca 2+ and Mg 2+ , then fixed for five minutes with 2% formaldehyde (MERCK-CLEVENOT) / 0.1% glutaraldehyde (SERVA), then washed with PBS supplemented with Ca 2+ and Mg 2+ and used in an ADH test. 1.2. Harvesting viruses and infections
Les protocoles de récolte et d' infection sont basés sur ceux décrits par Gautier et al . (2000). Les virus sont récoltés à partir de cellules d' encapsidation presque confluentes en monocouche 20 à 24 heures après avoir changé le milieu. Le milieu récolté est centrifugé à 5 000 tours/min pendant dix minutes et le virus est ensuite titré sur des cellules QT6. Brièvement, le jour avant la titration, 5 x 105 cellules QT6 sont ensemencées sur des plaques à six puits. Les cellules sont infectées avec des dilutions décimales du surnageant viral puis retournées dans l'incubateur pour une durée additionnelle de 48 heures. Les cellules sont alors fixées et colorées pour le test à l'ADH. 1.3. Test ADH Deux jours après, les cellules infectées sont lavées deux fois avec du PBS supplémenté avec des ions Ca2+ etHarvesting and infection protocols are based on those described by Gautier et al. (2000). The viruses are harvested from almost confluent packaging cells in a monolayer 20 to 24 hours after changing the medium. The harvested medium is centrifuged at 5,000 rpm for ten minutes and the virus is then titrated on QT6 cells. Briefly, the day before the titration, 5 x 10 5 QT6 cells are seeded on six-well plates. The cells are infected with decimal dilutions of the viral supernatant and then returned to the incubator for an additional 48 hours. The cells are then fixed and stained for the ADH test. 1.3. ADH test Two days later, the infected cells are washed twice with PBS supplemented with Ca 2+ ions and
Mg2+, fixé pendant cinq minutes avec du formaldéhyde 2%Mg 2+ , fixed for five minutes with 2% formaldehyde
(MERCK-CLEVENOT) / glutaraldéhyde 0,1% (SERVA), puis lavées dans du PBS supplémenté en Ca2+ et Mg2+. Après fixation et rinçage, les cellules sont recouvertes avec un volume minimal de la solution de coloration qui consiste pour 1 ml en 900 μl de Tris 0,15M pH8,5, 70 μl d'une solution de Nicotina ide Adénine Dinucléotide (NAD) à 10 mg/ml dans de l'eau (ICN) , 22 μl de 2-butanol (PROLABO), 11 μl de phénazine methosulfate à 0,5 mg/ml d'eau distillée (SIGMA) et 10 μl de TétraNitroBlue Tétrazolium (TNBT) (JANSEN CHEMICA) , 10 mg dans 700 μl de diméthyl-formamide + 300 μl d'eau) ; les cellules sont ensuite incubées dans le noir pendant six à douze heures à température ambiante. 1.4. Vecteurs d' expression et constructions retrovirales(MERCK-CLEVENOT) / 0.1% glutaraldehyde (SERVA), then washed in PBS supplemented with Ca 2+ and Mg 2+ . After fixing and rinsing, the cells are covered with a minimum volume of the staining solution which consists for 1 ml in 900 μl of 0.15M Tris pH 8.5, 70 μl of a solution of Nicotina ide Adenine Dinucleotide (NAD) at 10 mg / ml in water (ICN), 22 μl of 2-butanol (PROLABO), 11 μl of phenazine methosulfate at 0.5 mg / ml of distilled water (SIGMA) and 10 μl of TetraNitroBlue Tetrazolium (TNBT ) (JANSEN CHEMICA), 10 mg in 700 μl of dimethylformamide + 300 μl of water); the cells are then incubated in the dark for six to twelve hours at room temperature. 1.4. Expression vectors and retroviral constructs
1.4.1. Vecteur SNV-TK: : Sh ble Le vecteur est construit en utilisant un vecteur basé sur le SNV contenant le gène Sh ble: :NLSlacZ (Jaffredo et al . , 2000) . Le vecteur est digéré avec HindIII ; les extrémités cohésives sont rendues franches. Le vecteur linéaire est ensuite digéré par Ncol et le fragment du vecteur est purifié sur gel. Le fragment TK::Sh ble est retiré du vecteur put 102 (CAYLA) par digestion avec Sali. Les extrémités du fragment TK::Sh ble sont rendues franches puis ce fragment est digéré par Nco I. Le fragment de 1,55 kb est ensuite purifié sur gel puis ligué dans le vecteur SNV préparé tel que décrit précédemment.1.4.1. SNV-TK:: Sh ble vector The vector is constructed using an SNV-based vector containing the Sh ble:: NLSlacZ gene (Jaffredo et al., 2000). The vector is digested with HindIII; the cohesive ends are made blunt. The linear vector is then digested with Ncol and the vector fragment is gel-purified. The TK :: Sh ble fragment is removed from the put 102 vector (CAYLA) by digestion with SalI. The ends of the TK :: Sh ble fragment are made blunt then this fragment is digested with Nco I. The 1.55 kb fragment is then purified on gel and then ligated into the SNV vector prepared as described above.
1.4.2. Vecteur SNV-IRES-Sh ble::lacZ1.4.2. SNV-IRES-Sh ble vector :: lacZ
Le vecteur est construit en utilisant un vecteur basé sur le SNV contenant le fragment Sh ble::lacZ du gène SNVThe vector is constructed using an SNV-based vector containing the Sh ble :: lacZ fragment of the SNV gene.
(Jaffredo et al . , 2000). Le vecteur est ensuite digéré avec Ncol et Xbal. L' IRES 1518 est inséré en utilisant les enzymes de restriction Xbal et Ncol.(Jaffredo et al., 2000). The vector is then digested with Ncol and Xbal. IRES 1518 is inserted using the restriction enzymes Xbal and Ncol.
1.4.3. Vecteur SNV-ADH-IRES-Sh ble::lacZ1.4.3. Vector SNV-ADH-IRES-Sh ble :: lacZ
Le vecteur est construit en utilisant un fragment SNV- IRES-Sh ble::lacZ ouvert par Xbal. Le gène ADH de 0,8 kb est retiré du vecteur de clonage TA (Gautier et al . , 1996) par digestion avec Spel / Xbal puis purifié sur gel et enfin ligué dans le vecteur SNV-IRES-Sh ble::lacZ.The vector is constructed using an SNV-IRES-Sh ble :: lacZ fragment opened by Xbal. The 0.8 kb ADH gene is removed from the TA cloning vector (Gautier et al., 1996) by digestion with Spel / Xbal then purified on gel and finally ligated into the vector SNV-IRES-Sh ble :: lacZ.
1.4.4. Vecteur SNV-ADH-IRES-TK: : Sh ble (vecteur SAITK) Le vecteur SNV-ADH-IRES-TK: : Sh ble, encore appelé SAITK, est construit en utilisant le fragment SNV-Tk::Sh ble, préalablement digéré par les enzymes Ncol/Pmll. Le gène ADH-IRES de 1,5 kb est retiré du vecteur SNV-ADH-IRES- Sh ble::lacZ par une digestion Ncol/Smal puis ensuite purifié sur gel et enfin ligué dans le vecteur SNV-TK: : Sh ble.1.4.4. SNV-ADH-IRES-TK:: Sh ble vector (SAITK vector) The SNV-ADH-IRES-TK:: Sh ble vector, also called SAITK, is constructed using the previously digested SNV-Tk :: Sh ble fragment by Ncol / Pmll enzymes. The 1.5 kb ADH-IRES gene is removed from the SNV-ADH-IRES- Sh ble :: lacZ vector by Ncol / Smal digestion and then purified on gel and finally ligated into the vector SNV-TK:: Sh ble.
1.5. Elimination des cellules non interférentes de la culture Les cellules DSH 134G ou DSH produisant SNV-Sh-ble : :NLS lacZ sont ensemencées à faible densité en double dans des boîtes à six puits. Les cellules sont infectées deux fois sur la nuit à un jour d'intervalle en utilisant 1 ml de surnageant viral SAITK (2 x 1,5 106 AFU) en présence de 2 μg/ml de polybrène. Deux jours après, l'expression ADN est révélée sur l'une des boîtes à six puits alors que la seconde boîte reçoit 100 μMole d' acyclovir par puits. La sélection à l' acyclovir est complète après huit jours. Le milieu de culture est alors retiré et remplacé par du milieu frais sans acyclovir. Les clones cellulaires d'encapsidation résistant à l' acyclovir sont alors testés pour leur aptitude à produire des virus. EXEMPLE 2 : CARACTERISATION DE LA DERIVE 2.1. Estimation de la dérive Plus une lignée d'encapsidation dérive, moins elle produit de retrovirus et plus elle devient infectable par les retrovirus qu'elle est censée produire. Ce phénomène, qui peut être mis en évidence lors de transfections de vecteurs munis d'un gène de sélection, est responsable de l'obtention d'un nombre de clones producteurs récupérés pouvant descendre en dessous de 1% (les 99% de clones non producteurs résultant en majorité de cellules infectées par les virus provenant des quelques cellules productrices transfectées) . II apparaît donc important, quand on veut travailler de manière clonale, de connaître la vitesse de dérive de la lignée utilisée. Pour cela, les inventeurs ont infecté la lignée d'encapsidation DSH134G par un retrovirus produit par cette lignée et muni d'un gène rapporteur. 48 heures après l'infection, il apparaît que la dérive est proportionnelle au nombre d'infections trouvées. Une infection réalisée avec le vecteur SNV-lacZ (encore appelé CXL) (suspension de 5.105 particules virales par ml) sur les cellules DSH-134G, après de nombreux passages en culture, a permis aux inventeurs d'atteindre un taux de cellules infectables dépassant les 50%.1.5. Elimination of non-interfering cells from culture DSH 134G or DSH cells producing SNV-Sh-ble:: NLS lacZ are seeded at low density in duplicate in six-well dishes. The cells are infected twice overnight at one day apart using 1 ml of SAITK viral supernatant (2 × 1.5 10 6 AFU) in the presence of 2 μg / ml of polybrene. Two days later, the DNA expression is revealed on one of the six-well dishes while the second dish receives 100 μMole of acyclovir per well. Selection with acyclovir is complete after eight days. The culture medium is then removed and replaced with fresh medium without acyclovir. The cell clones resistant to acyclovir are then tested for their ability to produce viruses. EXAMPLE 2: CHARACTERIZATION OF THE DERIVATIVE 2.1. Drift estimation The more a packaging line drifts, the less retroviruses it produces and the more it becomes infectious with the retroviruses it is supposed to produce. This phenomenon, which can be highlighted during transfections of vectors equipped with a selection gene, is responsible for obtaining a number of producer clones recovered which may drop below 1% (the 99% of clones not mostly resulting from virus infected cells from the few transfected producer cells). It therefore seems important, when one wants to work clonally, to know the speed of drift of the line used. For this, the inventors infected the packaging line DSH134G with a retrovirus produced by this line and provided with a reporter gene. 48 hours after infection, it appears that the drift is proportional to the number of infections found. An infection carried out with the vector SNV-lacZ (also called CXL) (suspension of 5.10 5 viral particles per ml) on DSH-134G cells, after numerous passages in culture, allowed the inventors to reach a level of infectable cells exceeding 50%.
Avec les DSH 134G, le phénomène de dérive semble être constant. En effet, quand la lignée a subi une correction de sa dérive, on constate une réapparition des cellules infectables .With the DSH 134G, the drift phenomenon seems to be constant. In fact, when the line has undergone a correction of its drift, there is a reappearance of the infectable cells.
(PV : particule virale ; DSH-PL : lignée d'encapsidation DSH 134G transfectée par un vecteur SNV- phléomycine-LacZ )(PV: viral particle; DSH-PL: DSH 134G packaging line transfected with an SNV-phleomycin-LacZ vector)
2.2. Les cellules infectables ne sont pas productrices de virus Les cellules DSH-CXL, qui correspondent à la lignée DSH-134G transfectée par un vecteur SNV-lacZ, ensemencées à faible densité, sont infectées par le vecteur SAITK puis sélectionnées par la Phléomycine. Les clones résistants apparaissent et les cellules sont testées pour leur capacité à produire des particules virales. Aucun clone ne produit de particule virale. Ceci démontre que les cellules permissives ont perdu leur capacité de production. 2.3. Vecteur suicide2.2. Infectible cells do not produce viruses DSH-CXL cells, which correspond to the DSH-134G line transfected with an SNV-lacZ vector, seeded at low density, are infected with the SAITK vector and then selected by Phleomycin. Resistant clones appear and cells are tested for their ability to produce viral particles. No clone produced viral particles. This demonstrates that permissive cells have lost their production capacity. 2.3. Suicide vector
Les inventeurs ont pensé éliminer ces cellules infectables non productrices de virus en les infectant par un vecteur SNV porteur d'un gène suicide. Les inventeurs ont construit un vecteur trifonctionnel appelé SAITKThe inventors have thought of eliminating these infectious cells which do not produce viruses by infecting them with an SNV vector carrying a suicide gene. The inventors have built a three-way vector called SAITK
(figure 1) qui se compose ainsi :(figure 1) which is composed as follows:
- un gène rapporteur qui est l'Alcool DésHydrogénase de Drosophile (ADH) , qui permet de connaître facilement, par réaction histochimique, le titre viral des différents clones sélectionnés mais aussi de vérifier si les cellules à éliminer l'ont été complètement par l'absence de cellules ADH positives dans la lignée d' encapsidation « corrigée » ;- a reporter gene which is Drosophila Alcohol DeHydrogenase (ADH), which makes it possible to know easily, by histochemical reaction, the viral titer of the different clones selected but also to check whether the cells to be eliminated have been completely destroyed by the absence of positive ADH cells in the "corrected" packaging line;
- un Site Interne de Liaison aux Ribosomes (1RES) qui permet une expression équilibrée des deux unités génétiques du vecteur.- an Internal Ribosome Linking Site (IRES) which allows balanced expression of the two genetic units of the vector.
- Un gène de fusion TK::ShBle qui comporte la fonction suicide portée par le gène de la Thymidine Kinase (TK) en présence d'Acyclovir et celle de résistance à la Phléomycine (ShBle) qui permet la sélection rapide des clones producteurs. Les cellules exprimant le vecteur peuvent donc être soit tuées soit sélectionnées positivement. Il convient de noter que ce gène suicide ne peut être utilisé sur des cellules qui ont été transfectées avec le gène dihydrofolate réductase qui confère la résistance au méthotrexate car l' Acyclovir tue les cellules qui le possèdent.- A TK :: ShBle fusion gene which includes the suicide function carried by the Thymidine Kinase (TK) gene in the presence of Acyclovir and that of resistance to Phleomycin (ShBle) which allows the rapid selection of producer clones. The cells expressing the vector can therefore be either killed or positively selected. It should be noted that this suicide gene cannot be used on cells which have been transfected with the dihydrofolate reductase gene which confers resistance to methotrexate because Acyclovir kills the cells which possess it.
Ce vecteur SAITK a été produit par transfection dans la lignée d'encapsidation DSH-134G. Les inventeurs ont récupéré deux clones producteurs sur 93 testés.This SAITK vector was produced by transfection into the packaging line DSH-134G. The inventors have recovered two of the 93 producer clones tested.
2.4. Effet de l' Acyclovir sur la production rétrovirale Les cellules DSH134G produisant un vecteur SNV-lacZ2.4. Effect of Acyclovir on Retroviral Production DSH134G Cells Producing an SNV-lacZ Vector
(encore appelées cellules DSH-CXL ou CXL) ont été ensemencées en plaques de six puits et mises en contact avec des doses croissantes d'Acyclovir (0, 50 et 100 μM/puits) . Des tests de production de particules virales ont été réalisés au cours du temps pour les trois concentrations. Les deux premières semaines, les cellules sont restées en présence d'Acyclovir. Ce dernier a ensuite été retiré du milieu.(also called DSH-CXL or CXL cells) were seeded in six-well plates and brought into contact with increasing doses of Acyclovir (0, 50 and 100 μM / well). Tests for the production of viral particles were carried out over time for the three concentrations. For the first two weeks, the cells remained in the presence of Acyclovir. The latter was then removed from the medium.
L'effet de l' Acyclovir, bien que diminuant fortement la production de particules virales au cours du traitement, a un effet réversible.The effect of Acyclovir, although strongly decreasing the production of viral particles during treatment, has a reversible effect.
EXEMPLE 3 : CORRECTION DE LA DERIVEEXAMPLE 3: DERIVATIVE CORRECTION
3.1. Elimination des cellules permissives par un virus portant le gène de la Thymidine Kinase . La suspension de virus SAITK (1,5 106PV/ml) a été déposée sur les cellules DSH-CXL ou DSH-134G naïves3.1. Elimination of permissive cells by a virus carrying the Thymidine Kinase gene. The SAITK virus suspension (1.5 10 6 PV / ml) was deposited on the naive DSH-CXL or DSH-134G cells
(cellules DSH 134G n'ayant jamais été transfectées par un vecteur retroviral) préalablement ensemencées à très faible densité dans trois puits (plaque de six puits) . 48 heures après, les cellules sont traitées par l'Acyclovir phosphoryle (ZOVIRAX®) à une concentration de 100 μMolaire pendant dix jours.(DSH 134G cells having never been transfected with a retroviral vector) previously seeded at very low density in three wells (six-well plate). 48 hours later, the cells are treated with Acyclovir phosphoryl (ZOVIRAX®) at a concentration of 100 μMolar for ten days.
- Dans les trois puits, seules les cellules interférentes sont sélectionnées par le Zovirax et constituent une lignée enrichie en cellules potentiellement productrices .- In the three wells, only the interfering cells are selected by Zovirax and constitute a line enriched in potentially producing cells.
- Dans le premier puits, la culture de cellules est amplifiée. — Sur les deux puits restants, les contrôles de présence de cellules ADH positives ou résistantes à la phléomycine ont été effectués. Ils se sont avérés négatifs . 3.2. Elimination des cellules non interférentes Les cellules DSH 134G sont ensemencées à faible densité en duplicats dans des plaques de six puits. Ensuite, les cellules sont infectées deux nuits de suite par 1 ml de surnageant de SAITK (2 x 1,5.106 PV/ml) en présence de 4 μg de polybrène dans un volume final de 2 ml. Après deux jours, on vérifie la présence de particules virales en révélant l'ADH sur l'une des plaques et sur l'autre plaque on traite les cellules avec 100 μMole d'Acyclovir (ZOVIRAX) . En sept à dix jours, la sélection est réalisée et on remet les cellules en milieu normal pour laisser pousser plus facilement les clones interférents .- In the first well, the cell culture is amplified. - On the two remaining wells, checks for the presence of ADH cells positive or resistant to phleomycin were carried out. They turned out to be negative. 3.2. Elimination of non-interfering cells DSH 134G cells are seeded at low density in duplicates in six-well plates. Then, the cells are infected for two consecutive nights with 1 ml of SAITK supernatant (2 × 1.5 × 10 6 PV / ml) in the presence of 4 μg of polybrene in a final volume of 2 ml. After two days, the presence of viral particles is checked by revealing the DHA on one of the plates and on the other plate the cells are treated with 100 μMol of Acyclovir (ZOVIRAX). In seven to ten days, the selection is made and the cells are returned to normal medium to allow the interfering clones to grow more easily.
Les DSH-134G survivantes sont testées pour leur capacité d'encapsidation après transfection de vecteurs SNV. Pour les cellules non-traitées, les inventeurs obtiennent au maximum 6% de clones producteurs . Après traitement, les résultats montent à 85%.The surviving DSH-134Gs are tested for their capacity for packaging after transfection of SNV vectors. For untreated cells, the inventors obtain a maximum of 6% of producer clones. After treatment, the results go up to 85%.
EXEMPLE 4 : CREATION D'UN NOUVEAU VECTEUR MULTIFONCTIONNEL : SASSHBLE (SNV, ADH, SV 40, Phléomycine)EXAMPLE 4: CREATION OF A NEW MULTIFUNCTIONAL VECTOR: SASSHBLE (SNV, ADH, SV 40, Phleomycin)
Les résultats de transfection obtenus montrent que les vecteurs contenant un gène de sélection à l'intérieur du génome viral encapsidable induisent un nombre de clones sélectionnés très supérieur au nombre de clones réellement transfectes. Ce phénomène est particulièrement vrai lorsque la lignée d'encapsidation a dérivé. Il est possible de co- transfecter deux vecteurs, l'un contenant le génome encapsidable et l'autre, non-encapsidable portant un gène de sélection, on récupère les cellules qui ont reçu le plasmide de sélection mais parmi elles, une partie seulement a reçu le vecteur encapsidable. Le nombre de clones à tester reste donc, dans les deux cas, important. Les inventeurs ont posé l'hypothèse que la majorité des clones non-producteurs provenaient de l'infection de cellules non-interférentes par des virus produits par des cellules transfectées. Les inventeurs ont imaginé dissocier le génome viral du gène de sélection tout en conservant les deux sur le même plasmide (figure 2) .The transfection results obtained show that the vectors containing a selection gene inside the encapsidable viral genome induce a number of selected clones much greater than the number of clones actually transfected. This phenomenon is particularly true when the packaging line has drifted. Two vectors can be co-transfected, one containing the genome encapsidable and the other, non-encapsidable carrying a selection gene, the cells which have received the selection plasmid are recovered but among them, only part received the encapsidable vector. The number of clones to be tested therefore remains, in both cases, significant. The inventors have hypothesized that the majority of non-producing clones originate from the infection of non-interfering cells by viruses produced by transfected cells. The inventors have imagined dissociating the viral genome from the selection gene while preserving the two on the same plasmid (FIG. 2).
La comparaison entre le vecteur SASSHBLE et le vecteur SNV 818 (Gautier et al . , 1996) est donnée dans le tableau ci-dessous. Ces deux vecteurs possèdent le gène de l'Alcool Déshydrogénase et le gène de résistance à la phléomycine mais SNV 818 possède l'ADH et la phléomycine fusionnés sur la même unité génétique et sous le contrôle des LTRs de SNV.The comparison between the vector SASSHBLE and the vector SNV 818 (Gautier et al., 1996) is given in the table below. These two vectors have the Alcohol Dehydrogenase gene and the phleomycin resistance gene, but SNV 818 has ADH and phleomycin fused on the same genetic unit and under the control of SNV LTRs.
Ces résultats ont été obtenus sur des DSH-134G non traitées par le système SAITK-Acyclovir .These results were obtained on DSH-134Gs not treated with the SAITK-Acyclovir system.
Au vu de ces résultats, les inventeurs ont imaginé combiner l'utilisation de ce type de vecteurs et le traitement par SAITK-Acyclovir.In view of these results, the inventors have imagined combining the use of this type of vector and the treatment with SAITK-Acyclovir.
Après transfection dans les DSH-134G, les cellules sont sélectionnées par la phléomycine, puis la titration est effectuée dès que les cellules sont prêtes. After transfection into DSH-134G, the cells are selected by phleomycin, then the titration is carried out as soon as the cells are ready.
(DSH-GAR : cellules DSH 134G « contrôle », résistantes à 1' Acyclovir)(DSH-GAR: DSH 134G "control" cells, resistant to Acyclovir)
Les inventeurs ont confirmé ce résultat au niveau clonal ; les vecteurs utilisés sont les mêmes que précédemment .The inventors confirmed this result at the clonal level; the vectors used are the same as above.
On constate, pour les vecteurs de type SNV 818, que le pourcentage de clones producteurs passe de 6% pour les cellules non traitées à 85% pour les cellules traitées. Le pourcentage de clones interférents est encore plus éloquent puisqu'il passe de 7% pour les cellules non traitées à 100% pour les cellules traitées.It is noted, for the SNV 818 type vectors, that the percentage of producer clones goes from 6% for the untreated cells to 85% for the treated cells. The percentage of interfering clones is even more eloquent since it goes from 7% for untreated cells to 100% for treated cells.
Pour les vecteurs de type SASSHBLE, les résultats vont dans le même sens (même si le pourcentage de clones producteurs avant traitement est plus de quatre fois plus important) , le pourcentage après traitement est du même ordre de grandeur et atteint 79% avec un taux d'interférence qui passe de 22 à 95%.For SASSHBLE type vectors, the results go in the same direction (even if the percentage of producer clones before treatment is more than four times greater), the percentage after treatment is of the same order of magnitude and reaches 79% with a rate interference from 22 to 95%.
Ces résultats indiquent aux inventeurs que pour les DSH 134G, le ratio maximum de clones producteurs est de l'ordre de 4/5 après transfection et que le l/5e ne produisant pas, semble un ratio constant. Celui-ci semble être dû à la localisation de l'intégration du vecteur transfecté dans l'ADN génomique de la cellule. Ce site d'intégration est incompatible avec la production de particules virales.These results indicate to the inventors that for DSH 134G, the maximum ratio of producing clones is of the order of 4/5 after transfection and that the 1/5 th not producing, seems a constant ratio. This seems to be due to the location of the integration of the transfected vector in the genomic DNA of the cell. This integration site is incompatible with the production of viral particles.
Les inventeurs ont ainsi montré que, après de nombreux passages, les cellules d'encapsidation DSH 134G ont tendance à perdre leur capacité à produire des particules virales. Un grand nombre d'entre elles deviennent alors permissives et peuvent être infectées par des virus de même type. Le traitement des DSH-134G par le système SAITK- Acyclovir, permet d'éliminer la majeure partie des cellules qui étaient permissives et donc non productrices. Ce traitement doit être préalable à la transfection. Il a permis aux inventeurs d'obtenir entre 79 et 85% de clones producteurs. En parallèle, l'utilisation d'un vecteur comme SASSHBLE permet d'obtenir, après transfection, le pourcentage maximum de clones producteurs disponibles quel que soit le taux de dérive de la lignée d'encapsidation.The inventors have thus shown that, after numerous passages, the packaging cells DSH 134G tend to lose their capacity to produce viral particles. Many of them then become permissive and can be infected with viruses of the same type. The treatment of DSH-134G with the SAITK-Acyclovir system makes it possible to eliminate the majority of the cells which were permissive and therefore non-productive. This treatment must be prior to transfection. It allowed the inventors to obtain between 79 and 85% of producer clones. In parallel, the use of a vector such as SASSHBLE makes it possible to obtain, after transfection, the maximum percentage of producer clones available whatever the rate of drift of the packaging line.
Il convient de noter que, de manière alternative, on peut substituer au vecteur SAITK, un vecteur SNV-GFP et, après infection, soumettre les cellules à un tri au FACS, afin de permettre d'enrichir de façon plus rapide la lignée d' encapsidation en cellules interférentes et d' éviter le traitement par l' Alcyclovir . It should be noted that, alternatively, the vector SAITK can be substituted for a vector SNV-GFP and, after infection, subject the cells to sorting with FACS, in order to allow the line to be enriched more quickly. encapsidation in interfering cells and avoid treatment with Alcyclovir.
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| FR0101151A FR2820146B1 (en) | 2001-01-29 | 2001-01-29 | PROCESS FOR OBTAINING HIGHLY PRODUCING RETROVIRUS ENCAPSIDATION CELLS BY ELIMINATING CELLS PERMISSIVE TO INFECTION BY RETRO VIRUS INFECTION |
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Citations (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP0334301A1 (en) * | 1988-03-21 | 1989-09-27 | Chiron Viagene, Inc. | Recombinant retroviruses |
| WO1993010218A1 (en) * | 1991-11-14 | 1993-05-27 | The United States Government As Represented By The Secretary Of The Department Of Health And Human Services | Vectors including foreign genes and negative selective markers |
| WO1997030169A1 (en) * | 1996-02-13 | 1997-08-21 | Fred Hutchinson Cancer Research Center | 10a1 retroviral packaging cells and uses thereof |
| WO1998042824A2 (en) * | 1997-03-20 | 1998-10-01 | Cellfactors Plc | Methods for selecting cells and their uses |
| US5843432A (en) * | 1992-12-16 | 1998-12-01 | Universite Pierre Et Marie Curie (Paris Vi) | Retroviral vectors for the treatment of tumors, and cell lines containing them |
| WO1998056937A2 (en) * | 1997-06-09 | 1998-12-17 | Genvec, Inc. | Chimeric vectors comprising a phage packaging site and a portion derived from the genome of a eukaryotic virus |
| WO1999015686A1 (en) * | 1997-09-23 | 1999-04-01 | Genvec, Inc. | Plasmids for construction of eukaryotic viral vectors |
-
2001
- 2001-01-29 FR FR0101151A patent/FR2820146B1/en not_active Expired - Fee Related
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2002
- 2002-01-29 WO PCT/FR2002/000339 patent/WO2002061103A1/en not_active Ceased
Patent Citations (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP0334301A1 (en) * | 1988-03-21 | 1989-09-27 | Chiron Viagene, Inc. | Recombinant retroviruses |
| WO1993010218A1 (en) * | 1991-11-14 | 1993-05-27 | The United States Government As Represented By The Secretary Of The Department Of Health And Human Services | Vectors including foreign genes and negative selective markers |
| US5843432A (en) * | 1992-12-16 | 1998-12-01 | Universite Pierre Et Marie Curie (Paris Vi) | Retroviral vectors for the treatment of tumors, and cell lines containing them |
| WO1997030169A1 (en) * | 1996-02-13 | 1997-08-21 | Fred Hutchinson Cancer Research Center | 10a1 retroviral packaging cells and uses thereof |
| WO1998042824A2 (en) * | 1997-03-20 | 1998-10-01 | Cellfactors Plc | Methods for selecting cells and their uses |
| WO1998056937A2 (en) * | 1997-06-09 | 1998-12-17 | Genvec, Inc. | Chimeric vectors comprising a phage packaging site and a portion derived from the genome of a eukaryotic virus |
| WO1999015686A1 (en) * | 1997-09-23 | 1999-04-01 | Genvec, Inc. | Plasmids for construction of eukaryotic viral vectors |
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