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WO2001031001A1 - A novel polypeptide, a translation initiation factor helper factor 28 and the polynucleotide encoding the polypeptide - Google Patents

A novel polypeptide, a translation initiation factor helper factor 28 and the polynucleotide encoding the polypeptide Download PDF

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Publication number
WO2001031001A1
WO2001031001A1 PCT/CN2000/000382 CN0000382W WO0131001A1 WO 2001031001 A1 WO2001031001 A1 WO 2001031001A1 CN 0000382 W CN0000382 W CN 0000382W WO 0131001 A1 WO0131001 A1 WO 0131001A1
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Prior art keywords
polypeptide
polynucleotide
translation initiation
initiation factor
factor cofactor
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PCT/CN2000/000382
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French (fr)
Chinese (zh)
Inventor
Yumin Mao
Yi Xie
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Shanghai Bioroad Gene Development Ltd
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Shanghai Bioroad Gene Development Ltd
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Priority to AU12646/01A priority Critical patent/AU1264601A/en
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Anticipated expiration legal-status Critical
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
    • C07K14/4701Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals not used
    • C07K14/4702Regulators; Modulating activity
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides

Definitions

  • the present invention belongs to the field of biotechnology. Specifically, the present invention describes a new polypeptide ⁇ M translation initiation factor cofactor 28, and a polynucleotide sequence encoding the polypeptide. The invention also relates to a method and application for preparing such polynucleotides and polypeptides.
  • Protein biosynthesis is the translation process of genetic information. The translation process requires mRNA, ribosome, various amino acids, tRNA, and the participation of various protein factors, including initiation factors, elongation factors, and termination factors.
  • elF such as eIF1, eIF2, eIF3, eIF4, etc. are eukaryotic biosynthesis initiation factors.
  • Met-tRNA, ⁇ eIF-2 ⁇ GTP ternary complex is the first step in the initiation process of eukaryotic protein synthesis.
  • the second step is the combination of ⁇ ⁇ 1411 ⁇ 1 and the 40S ribosomal subunit.
  • Me t-tRM! ⁇ 40S. MRNA complex is formed, and the above two steps are regulated by several helper protein factors (Gupta eta l. 1993; Her shey 1991; Merrick and Hershey 1996).
  • GTP binds to eIF-2 to form a binary complex, and then binds to Met-tRNA! Raet .
  • GTP binds to elF-2 to enhance the affinity of eIF-2 to Met-tRNA! Net , a cofactor eIF2C enhances the stability of the ternary complex and prevents its decomposition.
  • the cofactor eIF2C also stabilizes Met-tRNA!. 40S ⁇ mRNA complex (Roy et al., 1988).
  • eIF2C was first isolated from rabbit reticulocyte lysin with a molecular weight of 140KD. It is easily degraded. The three degrading peptides are 94KD, 50KD, and 25KD.
  • the open reading frame sequence of eIF2C gene decodes 813 amino acids. Its starting AUG is located in the translated strong signal sequence (CGAGAUGG). It contains purines at the -3 and +4 positions. No polyadenosine was found in the non-coding region at the 3 'end. acid.
  • the total GC content of the cloned eIF2CcDNA accounted for 60%, which was relatively lower than some human translation initiation factors eIF-2 cc (GC 40%), eIF-2 ⁇ (GC 42%), and eIF-2 V (GC 43%). high.
  • the eIF2C gene open reading frame sequence decoded peptide was 90KD, and its molecular weight was different from that of 140KDeIF2C in rabbit reticinolysin suggesting post-translational modifications. Two N-glycosylation sites, two Amidation site, eight N-tetradecanylation sites, multiple phosphorylation sites.
  • the 94KD peptide purified from rabbit retinolysin is a glycosylated protein with a high isoelectric point and rich in charged amino acids (Cheng zou et al., 1998).
  • the human translation initiation factor cofactor 28 gene of the present invention has 80% homology with the rabbit eIF2C 90 gene at the protein level (homologous protein number AF005355), and its domain is similar to the characteristic structure of the eIF2C gene family Domain 1-High GC content, post-translational modification, possible N-glycosylation sites, amidation sites, N-tetradecanylation sites, and multiple phosphorylation sites, based on the above Therefore, the novel gene of the present invention is considered to be a gene encoding a human translation initiation factor cofactor gene family, named as human translation initiation factor cofactor 28 ′, and from this it is deduced that its domain is similar to the eIF2C gene family domain, and has Similar biological functions.
  • EIF2C was also found in rabbit kidney cDNA, suggesting that the eIF2C gene is a simple repeat in the rabbit chromosome (Cheng zou et al., 1998).
  • Some studies have shown that eIF2C-like activity is widely present in eukaryotic tissues, such as mouse ascites tumor cells, wheat germ, yeast, etc. (Chakravarty et al., 1985; Dasgupta et al., 1978; Osterhout et al., 1983; Ahmad et al 1985).
  • Another object of the invention is to provide a polynucleotide encoding the polypeptide.
  • Another object of the present invention is to provide a recombinant vector containing a polynucleotide encoding a translation initiation factor cofactor 28.
  • Another object of the invention is to provide a genetically engineered host cell containing a polynucleotide encoding a translation initiation factor cofactor 28.
  • Another object of the present invention is to provide a method for producing a translation initiation cofactor 28.
  • Another object of the present invention is to provide antibodies against the polypeptide-translation initiation factor cofactor 28 of the present invention.
  • Another object of the present invention is to provide mimic compounds, antagonists, agonists, and inhibitors directed to the polypeptide-translation initiation factor cofactor 28 of the present invention.
  • Another object of the present invention is to provide a method for diagnosing and treating diseases related to abnormalities of translation initiation factor cofactor 28.
  • Summary of invention In a first aspect of the present invention, a novel isolated translation initiation factor cofactor 28 is provided.
  • the polypeptide is of human origin and comprises: a polypeptide having the amino acid sequence of SEQ ID NO: 2, or a conservative variant polypeptide thereof, Or its active fragment, or its active derivative, analog.
  • the polypeptide is a polypeptide having the amino acid sequence of SEQ ID NO: 2,
  • a polynucleotide encoding these isolated polypeptides, the polynucleotide comprising a nucleotide sequence, the nucleotide sequence and at least 80% of the nucleotide sequence selected from the group Identities: (a) a polynucleotide encoding the aforementioned translation initiation factor cofactor 28; (b) a polynucleotide complementary to the polynucleotide (a).
  • the polynucleotide encodes a polypeptide having the amino acid sequence shown in SEQ ID NO: 2.
  • sequence of the polynucleotide is one selected from the group consisting of: (a) a sequence having positions 878-1636 in SEQ ID NO: 1; and (b) a sequence having 1-2951 in SEQ ID NO: 1 Sequence of bits.
  • Fig. 1 is a comparison diagram of amino acid sequence homology of translation initiation factor cofactor 28 of the present invention and rabbit transcription initiation factor eF2C.
  • the upper sequence is the translation initiation factor cofactor 28, and the lower sequence is the rabbit transcription initiation factor e lF2C.
  • Identical amino acids are represented by single-character amino acids between the two sequences, and similar amino acids are represented by "+”.
  • Figure 2 shows the polyacrylamide gel electrophoresis (SDS-PAGE) of the isolated translation initiation factor cofactor 28.
  • 28kDa is the molecular weight of the protein.
  • the arrow indicates the isolated protein band.
  • isolated refers to the separation of a substance from its original environment (if it is a natural substance, the original environment is the natural environment).
  • polynucleotides and polypeptides in a natural state in a living cell are not isolated and purified, but the same polynucleotides or polypeptides are separated and purified if they are separated from other substances in the natural state .
  • isolated translation initiation factor cofactor 28 means translation initiation factor helper Factor 28 is essentially free of other proteins, lipids, sugars or other substances with which it is naturally associated. Those skilled in the art can purify the translation initiation factor cofactor 28 using standard protein purification techniques. Substantially pure polypeptides can produce a single main band on a non-reducing polyacrylamide gel. The purity of the translation initiation factor cofactor 28 polypeptide can be analyzed by amino acid sequence.
  • the present invention provides a new polypeptide-translation initiation factor cofactor 28, which basically consists of the amino acid sequence shown in SEQ ID NO: 2.
  • the polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide, and preferably a recombinant polypeptide.
  • the polypeptide of the present invention may be a naturally purified product or a chemically synthesized product, or may be produced from a prokaryotic or eukaryotic host (for example, bacteria, yeast, higher plants, insects, and mammalian cells) using recombinant technology. Depending on the host used in the recombinant production protocol, the polypeptide of the invention may be glycosylated, or it may be non-glycosylated. Polypeptides of the invention may also include or exclude starting methionine residues.
  • the invention also includes fragments, derivatives and analogs of the translation initiation factor cofactor 28.
  • fragment refers to a polypeptide that substantially maintains the same biological function or activity of the translation initiation factor cofactor 28 of the present invention.
  • a fragment, derivative or analog of the polypeptide of the present invention may be: (I) a kind in which one or more amino acid residues are substituted with conservative or non-conservative amino acid residues (preferably conservative amino acid residues), and the substitution
  • the amino acid may or may not be encoded by a genetic codon; or ( ⁇ ) a type in which a group on one or more amino acid residues is replaced by another group to include a substituent; or ( ⁇ ⁇ )
  • Such a polypeptide sequence in which the mature polypeptide is fused with another compound such as a compound that prolongs the half-life of the polypeptide, such as polyethylene glycol
  • a polypeptide sequence in which an additional amino acid sequence is fused into the mature polypeptide (Such as a leader sequence or a secreted sequence or a sequence used to purify this polypeptide or a protease sequence)
  • such fragments, derivatives, and analogs are considered to be within the knowledge of those skilled in the art.
  • the present invention provides an isolated nucleic acid (polynucleotide), which basically consists of a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID NO: 2.
  • the polynucleotide sequence of the present invention includes the nucleotide sequence of SEQ ID NO: 1.
  • the polynucleotide of the present invention is found from a cDNA library of human fetal brain tissue. It contains a polynucleotide sequence with a total length of 2951 bases, and its open reading frame (878-1636) encodes 252 amino acids. According to the amino acid sequence homology comparison, it was found that this polypeptide has 80% homology with rabbit's transcription initiation factor e lF2C. It can be inferred that the translation initiation factor cofactor 28 has rabbit's transcription initiation The factor e lF2C has a similar structure and function.
  • the polynucleotide of the present invention may be in the D form or the RNA form.
  • DNA forms include cD, genomic DNA, or synthetic DNA.
  • DNA can be single-stranded or double-stranded.
  • DM can be coded or non-coded.
  • the coding region sequence encoding a mature polypeptide may be the same as the coding region sequence shown in SEQ ID NO: 1 or a degenerate variant.
  • a "degenerate variant" refers to a nucleic acid sequence encoding a protein or polypeptide having SEQ ID NO: 2 but different from the coding region sequence shown in SEQ ID NO: 1 in the present invention.
  • the polynucleotide encoding the mature polypeptide of SEQ ID NO: 2 includes: only the coding sequence of the mature polypeptide; the coding sequence of the mature polypeptide and various additional coding sequences; the coding sequence of the mature polypeptide (and optional additional coding sequences); Coding sequence.
  • polynucleotide encoding a polypeptide refers to a polynucleotide comprising the polypeptide and a polynucleotide comprising additional coding and / or non-coding sequences.
  • the invention also relates to variants of the polynucleotides described above, which encode polypeptides or fragments, analogs and derivatives of polypeptides having the same amino acid sequence as the invention.
  • Variants of this polynucleotide can be naturally occurring allelic variants or non-naturally occurring variants. These nucleotide variants include substitution variants, deletion variants, and insertion variants.
  • an allelic variant is an alternative form of a polynucleotide that may be a substitution, deletion, or insertion of one or more nucleotides, but does not substantially change the function of the polypeptide it encodes .
  • the invention also relates to a polynucleotide that hybridizes to the sequence described above (having at least 50%, preferably 70% identity, between the two sequences).
  • the present invention particularly relates to polynucleotides that can hybridize to the polynucleotides of the present invention under stringent conditions.
  • "strict conditions” means: (1) hybridization and elution at lower ionic strength and higher temperature, such as 0.2xSSC, 0.1% SDS, 60 ° C; or (2) Add a denaturant such as 50 when hybridizing.
  • the polypeptide encoded by the hybridizable polynucleotide has the same biological function and activity as the mature polypeptide shown in SEQ ID NO: 2.
  • nucleic acid fragments that hybridize to the sequences described above.
  • a "nucleic acid fragment” contains at least 10 nucleotides in length, preferably at least 20-30 nucleotides, more preferably at least 50-60 nucleotides, and most preferably at least 100 nuclei. Glycylic acid or more. Nucleic acid fragments can also be used for nucleic acid amplification Amplification techniques (eg, PCR) to identify and / or isolate a polynucleotide encoding a translation initiation factor cofactor 28.
  • the polypeptides and polynucleotides in the present invention are preferably provided in an isolated form and are more preferably purified to homogeneity.
  • polynucleotide sequence encoding the translation initiation factor cofactor 28 of the present invention can be obtained by various methods.
  • polynucleotides are isolated using hybridization techniques well known in the art. These techniques include, but are not limited to: 1) hybridization of probes to genomic or cDNA libraries to detect homologous polynucleotide sequences, and 2) antibody screening of expression libraries to detect polynucleosides with common structural characteristics Acid fragments.
  • the DNA fragment sequence of the present invention can also be obtained by the following methods: 1) separating the double-stranded DM sequence from the genomic DNA; 2) chemically synthesizing the DNA sequence to obtain the double-stranded DNA of the polypeptide.
  • genomic DNA isolation is the least commonly used. Direct chemical synthesis of DNA sequences is often the method of choice.
  • the more commonly used method is the isolation of cDNA sequences.
  • the standard method for isolating the cDNA of interest is to isolate mRNA from donor cells that overexpress the gene and perform reverse transcription to form a plasmid or phage cDNA library.
  • the construction of cDNA libraries is also a common method (Sambrook, et al., Moleculolar Cloning, A Labora tory Manua, Collspring Harbor Labora tory. New York, 1989).
  • Commercially available cDNA libraries are also available, such as different cDNA libraries from Clontech. When polymerase reaction technology is used in combination, even very small expression products can be cloned.
  • genes of the present invention can be selected from these cDNA libraries by conventional methods. These methods include (but are not limited to): (l) DNA-DM or DM-RNA hybridization; (2) the presence or absence of a marker gene function; (3) measuring the level of the transcript of the translation initiation factor cofactor 28; ( 4) Detecting gene-expressed protein products by immunological techniques or by measuring biological activity. The above methods can be used singly or in combination.
  • the probe used for hybridization is homologous to any part of the polynucleotide of the present invention, and its length is at least 10 nucleotides, preferably at least 30 nucleotides, more preferably At least 50 nucleotides, preferably at least 100 nucleotides.
  • the length of the probe is usually within 2000 nucleotides, preferably within 1000 nucleotides.
  • the probe used here is usually a DNA sequence chemically synthesized based on the gene sequence information of the present invention.
  • the genes or fragments of the present invention can of course be used as probes.
  • DNA probes can be labeled with radioisotopes, luciferin, or enzymes (such as alkaline phosphatase).
  • the protein product of the translation initiation factor cofactor 28 gene expression can be detected by immunological techniques such as Western blotting, radioimmunoprecipitation, and enzyme-linked immunosorbent assay (ELISA).
  • immunological techniques such as Western blotting, radioimmunoprecipitation, and enzyme-linked immunosorbent assay (ELISA).
  • Method for Amplifying DNA / RNA by PCR are preferred for obtaining the genes of the invention.
  • the RACE method RACE-Rapid Amplification of cDNA Ends
  • the primers used for PCR can be appropriately based on the polynucleotide sequence information of the present invention disclosed herein. Select and synthesize using conventional methods.
  • the amplified DNA / R fragment can be isolated and purified by conventional methods such as by gel electrophoresis.
  • polynucleotide sequence of the gene of the present invention or various DNA fragments and the like obtained as described above can be measured by a conventional method such as dideoxy chain termination method (Sanger et al. PNAS, 1977, 74: 5463-5467). Such polynucleotide sequences can also be determined using commercial sequencing kits and the like. In order to obtain the full-length cDNA sequence, sequencing needs to be repeated. Sometimes it is necessary to determine the cDNA sequence of multiple clones in order to splice into a full-length cDNA sequence.
  • the present invention also relates to a vector comprising the polynucleotide of the present invention, and a host cell produced by genetic engineering using the vector of the present invention or directly using a translation initiation factor cofactor 28 coding sequence, and the recombinant technology to produce the polypeptide of the present invention Methods.
  • a polynucleotide sequence encoding a translation initiation factor cofactor 28 may be inserted into a vector to constitute a recombinant vector containing the polynucleotide of the present invention.
  • vector refers to bacterial plasmids, phages, yeast plasmids, plant cell viruses, mammalian cell viruses such as adenoviruses, retroviruses, or other vectors well known in the art.
  • Vectors suitable for use in the present invention include, but are not limited to: T7 promoter-based expression vectors (Rosenberg, et al.
  • any plasmid and vector can be used to construct a recombinant expression vector.
  • An important feature of an expression vector is that it usually contains a replication origin, a promoter, a marker gene, and translation control elements. Methods well known to those skilled in the art can be used to construct a DNA sequence containing a translation initiation factor cofactor 28 and a suitable Expression vector for transcriptional / translational regulatory elements.
  • the expression vector also includes a ribosome binding site and a transcription terminator for translation initiation. Insertion of enhancer sequences into the vector will enhance its transcription in higher eukaryotic cells. Enhancers are cis-acting factors for D expression, usually about 10 to 300 base pairs that act on promoters to enhance gene transcription. Illustrative examples include SV40 enhancers of 100 to 270 base pairs on the late side of the origin of replication, polyoma enhancers on the late side of the origin of replication, and adenoviral enhancers.
  • the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase, neomycin resistance, and green for eukaryotic cell culture.
  • selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase, neomycin resistance, and green for eukaryotic cell culture.
  • GFP fluorescent protein
  • tetracycline or ampicillin resistance for E. coli.
  • a polynucleotide encoding a translation initiation factor cofactor 28 or a recombinant vector containing the polynucleotide can be transformed or transduced into a host cell to constitute a genetically engineered host cell containing the polynucleotide or the recombinant vector.
  • host cell refers to a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a mammalian cell.
  • Escherichia coli, Streptomyces bacterial cells such as Salmonella typhimurium
  • fungal cells such as yeast
  • plant cells insect cells
  • fly S2 or Sf 9 animal cells
  • animal cells such as CH0, COS or Bowes melanoma cells.
  • Transformation of a host cell with a DNA sequence described in the present invention or a recombinant vector containing the DNA sequence can be performed using conventional techniques well known to those skilled in the art.
  • the host is a prokaryote, such as E. coli
  • competent cells capable of absorbing DNA can be harvested after the exponential growth phase and treated with the CaCl 2 method. The steps used are well known in the art. Alternatively, MgCl 2 is used. If necessary, transformation can also be performed by electroporation.
  • the host is a eukaryotic organism, the following DNA transfection methods can be used: calcium phosphate co-precipitation method, or conventional mechanical methods such as microinjection, electroporation, and liposome packaging.
  • polynucleotide sequence of the present invention can be used to express or produce a recombinant translation initiation factor cofactor 28 (Science, 1984; 224: 1431). Generally there are the following steps:
  • the medium used in the culture may be selected from various conventional mediums. Culture is performed under conditions suitable for host cell growth. After the host cells have grown to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
  • a suitable method such as temperature conversion or chemical induction
  • the recombinant polypeptide may be coated in a cell, expressed on a cell membrane, or secreted outside the cell. If necessary, the recombinant protein can be isolated and purified by various separation methods using its physical, chemical and other properties. These methods are well known to those skilled in the art. These methods include, but are not limited to: conventional renaturation treatment, protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion Exchange chromatography, high performance liquid chromatography (HPLC) and various other liquid chromatography techniques and combinations of these methods.
  • conventional renaturation treatment protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion Exchange chromatography, high performance liquid
  • polypeptides of the present invention as well as antagonists, agonists and inhibitors of the polypeptides, can be directly used in the treatment of diseases, for example, they can treat malignant tumors, adrenal deficiency, skin diseases, various types of inflammation, HIV infection, and immune diseases.
  • the activity of the translation initiation cofactor eIF2C is widely present in eukaryotic tissues, such as rabbit reticulum, rabbit kidney, mouse ascites tumor cells, wheat germ, and yeast, it suggests that the eIF2C gene is particularly important in eukaryotic tissues. It is widely expressed in reticular tissue and tumor tissue. Therefore, the abnormality of the translation initiation factor cofactor 28 gene and its expression product by the human of the present invention will cause various diseases, especially reticular tissue diseases and various tumors.
  • diseases include, but are not limited to: splenomegaly, hypersplenism, renal interstitial diseases such as interstitial nephritis, tubular acidosis, alcoholic cirrhosis, basal epithelial tumors, squamous epithelial tumors, mucinous tumors, fibers Tumors such as reticular histiocytoma, fibrohistiocytoma, malignant fibrohistiocytoma, lipoma, chondroma, hemangioma, lymphoma, hematopoietic tumors such as leukemia, neuroma, adenoma.
  • renal interstitial diseases such as interstitial nephritis, tubular acidosis, alcoholic cirrhosis, basal epithelial tumors, squamous epithelial tumors, mucinous tumors, fibers Tumors such as reticular histiocytoma, fibroh
  • These diseases include, but are not limited to: spina bifida, craniocerebral fissure, anencephaly malformation, cerebral bulge, foramencephalic malformation, congenital hydrocephalus, aqueduct malformation, dwarfism of cartilage hypoplasia, spinal epiphyseal dysplasia, false Cartilage hypoplasia, Langer-Giedion syndrome, funnel chest, gonad hypoplasia, congenital adrenal hyperplasia, upper urethra, cryptorchidism, with short stature Syndromes such as Conradi syndrome and Danbol t-Clos s syndrome, congenital glaucoma or cataract, congenital lens position abnormality, congenital blepharoplasia, retinal dysplasia, congenital optic nerve atrophy, congenital sensory neurological hearing loss, Cleft-hand and cracked feet, teratosis, Wi ll iams syndrome, Alag ille syndrome, Bayer syndrome.
  • the invention also provides methods for screening compounds to identify agents that increase (agonist) or suppress (antagonist) translation initiation factor cofactor 28.
  • Agonists enhance translation initiation factor cofactor 28 to stimulate biological functions such as cell proliferation, while antagonists prevent and treat disorders related to excessive cell proliferation, such as various cancers.
  • mammalian cells or a membrane preparation expressing a translation initiation factor cofactor 28 can be cultured together with a labeled translation initiation factor cofactor 28 in the presence of a drug. The ability of the drug to increase or block this interaction is then determined.
  • Antagonists of translation initiation factor cofactor 28 include selected antibodies, compounds, receptor deletions, and the like. Antagonists of translation initiation factor cofactor 28 can bind to translation initiation factor cofactor 28 and eliminate its function, or inhibit the production of the polypeptide, or bind to the active site of the polypeptide so that the polypeptide cannot exert its biology Features.
  • translation initiation factor cofactor 28 can be added to the bioanalytical assay to determine whether the compound is a compound by measuring the effect of the compound on the interaction between translation initiation factor cofactor 28 and its receptor. Antagonist. Receptor deletions and analogs that act as antagonists can be screened in the same manner as described above for screening compounds.
  • Polypeptide molecules capable of binding to translation initiation factor cofactor 28 can be obtained by screening a random peptide library composed of various possible combinations of amino acids bound to a solid phase. When screening, the 28 molecules of translation initiation cofactors should generally be labeled.
  • the present invention provides a method for producing antibodies using polypeptides, and fragments, derivatives, analogs or cells thereof as antigens. These antibodies can be polyclonal or monoclonal antibodies.
  • the invention also provides antibodies directed against a translation initiation factor cofactor 28 epitope. These antibodies include (but are not limited to): polyclonal antibodies, monoclonal antibodies, chimeric antibodies, single chain antibodies, Fab fragments, and fragments produced by Fab expression libraries.
  • polyclonal antibodies can be obtained by directly injecting immunized animals (such as rabbits, mice, rats, etc.) with translation initiation factor cofactor 28.
  • immunized animals such as rabbits, mice, rats, etc.
  • a variety of adjuvants can be used to enhance the immune response, including but not limited to Freund's Agent.
  • Techniques for preparing monoclonal antibodies for translation initiation factor cofactor 28 include, but are not limited to, hybridoma technology (Kohler and Mistein. Nature, 1975, 256: 495-497), three Tumor technology, human B-cell hybridoma technology, EBV-hybridoma technology, etc.
  • Chimeric antibodies that bind human constant regions and non-human-derived variable regions can be produced using existing techniques (Morrison et al, PNAS, 1985, 81: 6851).
  • the existing technology for producing single chain antibodies (US Pat No. 4946778) can also be used to produce single chain antibodies against translation initiation factor cofactor 28.
  • Antibodies against translation initiation factor cofactor 28 can be used in immunohistochemical techniques to detect translation initiation factor cofactor 28 in biopsy specimens.
  • Monoclonal antibodies that bind to translation initiation factor cofactor 28 can also be labeled with radioisotopes and injected into the body to track their location and distribution. This radiolabeled antibody can be used as a non-invasive diagnostic method to locate tumor cells and determine whether there is metastasis.
  • Antibodies can also be used to design immunotoxins that target a particular part of the body. Such as translation initiation factor cofactor 28.
  • High affinity monoclonal antibodies can covalently bind to bacterial or phytotoxins (such as diphtheria toxin, ricin, ormosine, etc.).
  • a common method is to attack the amino group of an antibody with a thiol cross-linking agent such as SPDP and bind the toxin to the antibody through the exchange of disulfide bonds. This hybrid antibody can be used to kill translation initiation factor cofactor 28 positive cell.
  • the antibodies of the present invention can be used to treat or prevent diseases related to translation initiation factor cofactor 28.
  • Administration of an appropriate dose of antibody can stimulate or block the production or activity of translation initiation factor cofactor 28.
  • the invention also relates to a diagnostic test method for quantitatively and locally detecting the level of translation initiation factor cofactor 28.
  • tests are well known in the art and include FISH assays and radioimmunoassays.
  • the level of translation initiation factor cofactor 28 detected in the test can be used to explain the importance of translation initiation factor cofactor 28 in various diseases and to diagnose diseases in which translation initiation factor cofactor 28 plays a role.
  • polypeptide of the present invention can also be used for peptide mapping analysis.
  • the polypeptide can be specifically cleaved by physical, chemical or enzymatic analysis, and subjected to one-dimensional or two-dimensional or three-dimensional gel electrophoresis analysis, and more preferably mass spectrometry analysis.
  • the polynucleotide encoding the translation initiation factor cofactor 28 can also be used for a variety of therapeutic purposes.
  • Gene therapy technology can be used to treat abnormal cell proliferation, development, or metabolism caused by non-expression or abnormal / inactive expression of translation initiation factor cofactor 28.
  • Recombinant gene therapy vectors (such as viral vectors) can be designed to express a variant translation initiation factor cofactor 28 to inhibit endogenous translation initiation factor cofactor 28 activity.
  • a variant translation initiation cofactor 28 may be shortened, Co-factor 28, a translation initiation factor lacking the signaling domain, lacks signaling activity, although it can bind to downstream substrates.
  • the recombinant gene therapy vector can be used to treat diseases caused by abnormal expression or activity of translation initiation factor cofactor 28.
  • Virus-derived expression vectors such as retrovirus, adenovirus, adenovirus-associated virus, herpes simplex virus, parvovirus, etc. can be used to transfer a polynucleotide encoding a translation initiation factor cofactor 28 into a cell.
  • Methods for constructing a recombinant viral vector carrying a polynucleotide encoding a translation initiation factor cofactor 28 can be found in existing literature (Sambrook, et al.).
  • a polynucleotide encoding the translation initiation factor cofactor 28 can be packaged into liposomes and transferred into cells.
  • Methods for introducing a polynucleotide into a tissue or cell include: directly injecting the polynucleotide into a tissue in vivo; or introducing the polynucleotide into a cell in vitro through a vector (such as a virus, phage, or plasmid), and then transplanting the cell Into the body and so on.
  • a vector such as a virus, phage, or plasmid
  • Oligonucleotides including antisense RNA and DNA
  • ribozymes that inhibit translation initiation factor cofactor 28 mRNA are also within the scope of the present invention.
  • a ribozyme is an enzyme-like RNA molecule that specifically decomposes specific RNA. Its mechanism of action is that the ribozyme molecule specifically hybridizes with a complementary target RNA for endonucleation.
  • Antisense RNA, DNA, and ribozymes can be obtained using any existing RNA or DNA synthesis technology, such as solid-phase phosphoramidite chemical synthesis to synthesize oligonucleotides.
  • Antisense RNA molecules can be obtained by in vitro or in vivo transcription of a DNA sequence encoding the RNA.
  • This DNA sequence has been integrated downstream of the vector's RNA polymerase promoter.
  • it can be modified in a variety of ways, such as increasing the sequence length on both sides, and the linkage between ribonucleosides using phosphate thioester or peptide bonds instead of phosphodiester bonds.
  • a polynucleotide encoding a translation initiation factor cofactor 28 can be used to diagnose diseases related to the translation initiation factor cofactor 28.
  • the polynucleotide encoding the translation initiation factor cofactor 28 can be used to detect the expression of the translation initiation factor cofactor 28 or the abnormal expression of the translation initiation factor cofactor 28 in a disease state.
  • the DNA sequence encoding the translation initiation factor cofactor 28 can be used to hybridize biopsy specimens to determine the expression of the translation initiation factor cofactor 28.
  • Hybridization techniques include Southern blotting, Northern blotting, and in situ hybridization. These techniques and methods are publicly available and mature, and related kits are commercially available.
  • polynucleotides of the present invention can be used as probes to be fixed on a microarray or a DNA chip (also referred to as a "gene chip") for analyzing differential expression analysis and gene diagnosis of genes in tissues.
  • Co-factor with translation initiation factor The transcription of the transcription initiation factor cofactor 28 can also be detected by RNA-polymerase chain reaction (RT-PCR) in vitro amplification of specific primers.
  • Detecting mutations in the translation initiation factor cofactor 28 gene can also be used to diagnose translation initiation factor cofactor 28-related diseases.
  • Translation initiation factor cofactor 28 mutations include point mutations, translocations, deletions, recombinations, and any other abnormalities compared to the normal wild-type translation initiation factor cofactor 28 DNA sequence. Mutations can be detected using existing techniques such as Southern blotting, DNA sequence analysis, PCR, and in situ hybridization. In addition, mutations may affect the expression of proteins. Therefore, Nor thern blotting and Western blotting can be used to indirectly determine whether a gene is mutated.
  • sequences of the invention are also valuable for chromosome identification. This sequence will specifically target a specific position on a human chromosome and can hybridize to it. Currently, the specific loci of each gene on the chromosome need to be identified. Currently, only a few chromosome markers based on actual sequence data (repeating polymorphisms) can be used to mark chromosome locations. According to the present invention, in order to associate these sequences with disease-related genes, an important first step is to locate these D sequences on a chromosome.
  • PCR primers (preferably 15-35bp) are prepared based on cDNA, and the sequences can be located on chromosomes. These primers were then used for PCR screening of somatic hybrid cells containing individual human chromosomes. Only those hybrid cells that contain the human gene corresponding to the primer will produce amplified fragments.
  • PCR localization of somatic hybrid cells is a quick way to localize DNA to specific chromosomes.
  • oligonucleotide primers of the present invention by a similar method, a set of fragments from a specific chromosome or a large number of genomic clones can be used to achieve sublocalization.
  • Other similar strategies that can be used for chromosomal localization include in situ hybridization, chromosome pre-screening with labeled flow sorting, and hybrid pre-selection to construct chromosome-specific cDNA libraries.
  • Fluorescent in situ hybridization of cDNA clones to metaphase chromosomes allows precise chromosomal localization in one step.
  • FISH Fluorescent in situ hybridization
  • the physical location of the sequence on the chromosome can be correlated with the genetic map data. These data can be found in, for example, V. Mckusick, Mendelian Inherance in Man (available online with Johns Hopkins University Welch Medical Library). Linkage analysis can then be used to determine the relationship between genes and diseases that have been mapped to chromosomal regions. Next, the differences in cDNA or genomic sequences between the affected and unaffected individuals need to be determined. If a mutation is observed in some or all diseased individuals and the mutation is not observed in any normal individuals, the mutation may be the cause of the disease.
  • Comparing affected and unaffected individuals usually involves first looking for structural changes in the chromosome, such as deletions or translocations that are visible at the chromosomal level or detectable using cDNA sequence-based PCR.
  • the cDNA accurately mapped to the disease-related chromosomal region can be one of 50 to 500 potentially pathogenic genes (assuming 1 megabase mapping resolution) Capacity and each 20kb corresponds to a gene).
  • the polypeptides, polynucleotides and mimetics, agonists, antagonists and inhibitors of the present invention can be used in combination with a suitable pharmaceutical carrier.
  • suitable pharmaceutical carrier can be water, glucose, ethanol, salts, buffers, glycerol, and combinations thereof.
  • the composition comprises a safe and effective amount of the polypeptide or antagonist, and carriers and excipients which do not affect the effect of the drug. These compositions can be used as drugs for the treatment of diseases.
  • the invention also provides a kit or kit containing one or more containers containing one or more ingredients of the pharmaceutical composition of the invention.
  • a kit or kit containing one or more containers containing one or more ingredients of the pharmaceutical composition of the invention.
  • these containers there may be instructional instructions given by government agencies that manufacture, use, or sell pharmaceuticals or biological products, which prompts permission for administration on the human body by government agencies that produce, use, or sell.
  • the polypeptides of the invention can be used in combination with other therapeutic compounds.
  • the pharmaceutical composition can be administered in a convenient manner, such as by a topical, intravenous, intraperitoneal, intramuscular, subcutaneous, intranasal or intradermal route of administration.
  • the translation initiation factor cofactor 28 is administered in an amount effective to treat and / or prevent a specific indication.
  • the amount and dose range of translation initiation factor cofactor 28 administered to a patient will depend on many factors, such as the mode of administration, the health conditions of the person to be treated, and the judgment of the diagnostician.
  • Total human fetal brain RNA was extracted by one-step method with guanidine isothiocyanate / phenol / chloroform.
  • the determined cDNA sequence was compared with the existing public D-sequence database (Genebank), and it was found that the cDNA sequence of one of the clones 0581G05 was new DNA.
  • the inserted cDNA fragments contained in this clone were determined in both directions by synthesizing a series of primers.
  • the results showed that the 0581G05 clone contained a full-length cDNA of 2951bp (as shown in Seq ID NO: l), and a 759bp open reading frame (0RF) from 878bp to 1636bp, encoding a new protein (such as Seq ID NO : Shown in 2).
  • This clone pBS_0581G05 and the encoded protein was named translation initiation factor cofactor 28.
  • Example 2 Homologous search of cDNA clones
  • CDNA was synthesized using fetal brain total RNA as a template and ol igo-dT as a primer for reverse transcription reaction. After purification with Qiagene's kit, the following primers were used for PCR amplification:
  • Pr imerl 5'- GATCAAAGCTACAGCAAGATCTGC-3 '(SEQ ID NO: 3)
  • Primer 2 5'- CACAGTTTTAGTTTAATAAAAGG -3 '(SEQ ID NO: 4)
  • Priraerl is a forward sequence starting at the lbp of the 5th end of SEQ ID NO: 1;
  • Primer2 is the 3 'reverse sequence in SEQ ID NO: 1,
  • Amplification conditions 50 mmol / L KC1, 10 mmol / L Tri s-Cl, (pH 8.5.5), 1.5 mmol / L MgCl 2 , 200 ⁇ mol / L dNTP, lOpmol in a reaction volume of 50 ⁇ 1 Primer, 1U Taq DNA Polymerization P CN00 / enzyme (Clontech).
  • the reaction was performed on a PE9600 DNA thermal cycler (Perkin-Elmer) for 25 cycles under the following conditions: 94. C 30sec; 55 ° C 30sec; 72 ° C 2min.
  • ⁇ -actin was set as a positive control and template blank was set as a negative control.
  • the amplified product was purified using a QIAGEN kit and ligated to a PCR vector (Invitrogen product) using a TA cloning kit.
  • the DNA sequence analysis results showed that the DNA sequence of the PCR product was exactly the same as the l-2951bp shown in SEQ ID NO: 1.
  • Example 4 Northern blot analysis of the expression of the translation initiation factor cofactor 28 gene
  • the total RM nal was extracted by a one-step method. Biochem 1987, 162, 156-159]. This method involves acid guanidinium thiocyanate phenol-chloroform extraction.
  • the tissue is homogenized with 4M guanidine isothiocyanate-25mM sodium citrate, 0.2M sodium acetate (pH4.0), and 1 volume of phenol and 1/5 volume of chloroform-isoamyl alcohol (49: 1 ) And centrifuge after mixing. Aspirate the aqueous layer, add isopropanol (0.8 vol) and centrifuge the mixture to obtain RNA precipitate. The obtained RM precipitate was washed with 70% ethanol, dried and dissolved in water.
  • RNA was synthesized by electrophoresis on a 1.2% agarose gel containing 20 mM 3- (N-morpholino) propanesulfonic acid (PH7.0)-5 mM sodium acetate-ImM EDTA-2.2M formaldehyde. It was then transferred to a nitrocellulose membrane.
  • the DNA probe used was the PCR-amplified translation initiation factor cofactor 28 coding region sequence (878bp to 1636bp) shown in FIG.
  • Primer3 5'- CCCCATATGATGGATGGCCACCCCAGCCGGTAC-3 '(Seq ID No: 5)
  • Primer4 5'- CCCAAGCTTTCACCGAAAATACATCGTGTGCTG-3' (Seq ID No: 6)
  • the 5 'ends of these two primers contain Ndel and Hindlll restriction sites, respectively.
  • the coding sequences of the 5 'and 3' ends of the gene of interest are followed, respectively.
  • the Ndel and Hindlll restriction sites correspond to the selectivity within the expression vector plasmid pET-28b (+) (Novagen, Cat. No. 69865.3). Digestion site.
  • the PCR reaction was performed using the PBS-0581G05 plasmid containing the full-length target gene as a template.
  • PCR reaction conditions are: total volume 50 ⁇ 1
  • the pBS-0581G05 plasmid contained 10 pg, and the primers Primer-3 and Primer-4 were l Opmol and Advantage polymerase Mix (Clontech) 1 ⁇ 1, respectively.
  • Cycle parameters 94 ° C 20s, 60. C 30s, 68 ° C 2 min, 25 cycles in total.
  • Ndel and Hindl11 were used to double-digest the amplified product and plasmid pET-28 (+), respectively, and large fragments were recovered and ligated with T4 ligase.
  • the ligated product was transformed into E.
  • Polypeptide synthesizer (product of PE company) was used to synthesize the following polypeptides specific for translation initiation factor cofactor 28: NH 2 -Met-Asp-Gly-Hi s-Pro-Ser-Arg-Tyr-Cys-Ala-Thr- Va l-Arg-Va l-Gln-COOH (SEQ ID NO: 7).
  • the polypeptide is coupled to hemocyanin and bovine serum albumin to form a complex, respectively.
  • Rabbits were immunized with 4 mg of the hemocyanin polypeptide complex plus complete Freund's adjuvant, and 15 days later, the hemocyanin polypeptide complex plus incomplete Freund's adjuvant was used to boost immunity once. ⁇ Using a 15 g / ml bovine serum albumin peptide complex-coated titer plate as an ELISA to determine antibody titers in rabbit serum. Total IgG was isolated from antibody-positive rabbit serum using protein A-Sepharose. The peptide was bound to a cyanogen bromide-activated Sepharose4B column, and anti-peptide antibodies were separated from the total IgG by affinity chromatography. The immunoprecipitation method proved that the purified antibody could specifically bind to translation initiation factor cofactor 28.

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Abstract

The present invention discloses a novel polypeptide, a translation initiation factor helper factor (28), the polynucleotide encoding the polypeptide and the method for producing the polypeptide by DNA recombinant technology. The invention also discloses the uses of the polypeptide in methods for treating various diseases, such as malignant tumour, hemopathy, HIV infection, immunological disease, and various inflammation, etc. The invention also discloses the agonists against the polypeptide and the therapeutic action thereof. The invention also discloses the uses of the polynucleotide encoding the novel translation initiation factor helper factor 28.

Description

一种新的多肽一翻译走 5始囡子辅助囡子 28和编码这种多肽的多核苷酸 技术领域  A New Polypeptide-Translate 5 Starter Helper 28 and Polynucleotide Encoding the Polypeptide TECHNICAL FIELD

本发明属于生物技术领域, 具体地说, 本发明描述了一种新的多肽 ~ M 译起始因子辅助因子 28, 以及编码此多肽的多核苷酸序列。 本发明还涉及此 多核苷酸和多肽的制备方法和应用。 蛋白质的生物合成是遗传信息的翻译过程。 翻译过程需要 mRNA、 核糖体、 各种氨基酸、 tRNA, 还需要各种蛋白因子的参与, 它们包括起始因子、 延伸因 子、 终止因子.  The present invention belongs to the field of biotechnology. Specifically, the present invention describes a new polypeptide ~ M translation initiation factor cofactor 28, and a polynucleotide sequence encoding the polypeptide. The invention also relates to a method and application for preparing such polynucleotides and polypeptides. Protein biosynthesis is the translation process of genetic information. The translation process requires mRNA, ribosome, various amino acids, tRNA, and the participation of various protein factors, including initiation factors, elongation factors, and termination factors.

elF如 eIFl、 eIF2、 eIF3、 eIF4等为真核生物合成起始因子。 实验显示, Met-tRNA, · eIF-2 · GTP 三元复合物的形成是真核生物蛋白合成起始过程的第 一步, 第二步是 \^ 1411^1与 40S核糖体亚基结合, 然后 Me t-tRM! · 40S . mRNA 复合物形成, 以上两步骤受数种辅助蛋白因子调控( Gupta e t a l. 1993; Her shey 1991; Merr ick and Hershey 1996 ) 。 在第一步中 GTP结合 eIF-2, 形成二元复 合物, 然后与 Met-tRNA! raet结合, GTP结合于 elF- 2增强了 eIF-2对 Met-tRNA! net 的亲合性, 辅助因子 eIF2C 可使三元复合物增强稳定性, 阻止它的分解。 在第二 步中辅助因子 eIF2C 也起着稳定 Met-tRNA! . 40S ■ mRNA 复合物的作用 (Roy et a l., 1988 )。 elF such as eIF1, eIF2, eIF3, eIF4, etc. are eukaryotic biosynthesis initiation factors. Experiments have shown that the formation of the Met-tRNA, · eIF-2 · GTP ternary complex is the first step in the initiation process of eukaryotic protein synthesis. The second step is the combination of \ ^ 1411 ^ 1 and the 40S ribosomal subunit. Then the Me t-tRM! · 40S. MRNA complex is formed, and the above two steps are regulated by several helper protein factors (Gupta eta l. 1993; Her shey 1991; Merrick and Hershey 1996). In the first step, GTP binds to eIF-2 to form a binary complex, and then binds to Met-tRNA! Raet . GTP binds to elF-2 to enhance the affinity of eIF-2 to Met-tRNA! Net , a cofactor eIF2C enhances the stability of the ternary complex and prevents its decomposition. In the second step, the cofactor eIF2C also stabilizes Met-tRNA!. 40S ■ mRNA complex (Roy et al., 1988).

eIF2C 首先在家兔网状细胞溶菌素中分离得到, 分子量为 140KD, 它易降 解, 三个降解多肽为 94KD、 50KD 与 25KD。 eIF2C 基因开放读框序列解码 813 个氨基酸, 它的起始 AUG 位于翻译的强信号序列 ( CGAGAUGG ) 中, 在 -3 与 +4 位置含有嘌呤, 在 3' 端的非编码区域未发现多聚腺苷酸。 克隆的 eIF2CcDNA 总的 GC含量占 60%, 比一些人翻译起始因子 eIF-2 cc ( GC 40% ) 、 eIF-2 β ( GC 42% ) 、 eIF-2 V ( GC 43% ) GC含量相对高。 eIF2C 基因开放读框序列解码多肽 为 90KD, 其分子量与兔网状细胞溶菌素中的 140KDeIF2C 的差异提示了翻译后 的修饰, 用 MOTIF查询程序发现了两个 N-糖基化位点、 两个酰胺化位点、 八个 N -十四烷酰化位点、 多个磷酸化位点。 兔网状细胞溶菌素中纯化的 94KD 多肽 是一个糖基化蛋白, 有高的等电点, 富含带电氨基酸(Cheng zou et a l ., 1998 )。 1 本发明的人翻译起始因子辅助因子 28基因与家兔 eIF2C 90基因在蛋白水 平上有 80%的同源性 (同源蛋白号 AF005355 ) , 其结构域相似于 eIF2C基因家 族的特征性结构域一- GC 含量较高、 存在翻译后的修饰、 可能有数个 N-糖基 化位点、 酰胺化位点、 N-十四烷酰化位点及多个磷酸化位点, 基于以上各点, 故认为本发明的新基因为一编码人翻译起始因子辅助因子基因家族的基因, 命 名为人翻译起始因子辅助因子 28„ 并以此推断其结构域与 eIF2C 基因家族结 构域相似, 具有相似的生物学功能。 eIF2C was first isolated from rabbit reticulocyte lysin with a molecular weight of 140KD. It is easily degraded. The three degrading peptides are 94KD, 50KD, and 25KD. The open reading frame sequence of eIF2C gene decodes 813 amino acids. Its starting AUG is located in the translated strong signal sequence (CGAGAUGG). It contains purines at the -3 and +4 positions. No polyadenosine was found in the non-coding region at the 3 'end. acid. The total GC content of the cloned eIF2CcDNA accounted for 60%, which was relatively lower than some human translation initiation factors eIF-2 cc (GC 40%), eIF-2 β (GC 42%), and eIF-2 V (GC 43%). high. The eIF2C gene open reading frame sequence decoded peptide was 90KD, and its molecular weight was different from that of 140KDeIF2C in rabbit reticinolysin suggesting post-translational modifications. Two N-glycosylation sites, two Amidation site, eight N-tetradecanylation sites, multiple phosphorylation sites. The 94KD peptide purified from rabbit retinolysin is a glycosylated protein with a high isoelectric point and rich in charged amino acids (Cheng zou et al., 1998). 1 The human translation initiation factor cofactor 28 gene of the present invention has 80% homology with the rabbit eIF2C 90 gene at the protein level (homologous protein number AF005355), and its domain is similar to the characteristic structure of the eIF2C gene family Domain 1-High GC content, post-translational modification, possible N-glycosylation sites, amidation sites, N-tetradecanylation sites, and multiple phosphorylation sites, based on the above Therefore, the novel gene of the present invention is considered to be a gene encoding a human translation initiation factor cofactor gene family, named as human translation initiation factor cofactor 28 ′, and from this it is deduced that its domain is similar to the eIF2C gene family domain, and has Similar biological functions.

在家兔肾 cDNA也找到了 eIF2C, 提示 eIF2C基因是兔染色体中的简单重复 序列 (Cheng zou et al., 1998 ) 。 一些研究显示类 eIF2C 的活性在真核生物 组织中广泛存在, 如鼠腹水瘤细胞、 小麦胚芽、 酵母等 ( Chakravarty et al., 1985; Dasgupta et al., 1978; Osterhout et al., 1983; Ahmad et al 1985 ) 。  EIF2C was also found in rabbit kidney cDNA, suggesting that the eIF2C gene is a simple repeat in the rabbit chromosome (Cheng zou et al., 1998). Some studies have shown that eIF2C-like activity is widely present in eukaryotic tissues, such as mouse ascites tumor cells, wheat germ, yeast, etc. (Chakravarty et al., 1985; Dasgupta et al., 1978; Osterhout et al., 1983; Ahmad et al 1985).

Lynn 等人发现 eIF2C在胚胎形成中有重要作用 (Lynn K et al., 1999 )。 发明目的 Lynn et al. Found that eIF2C has an important role in embryogenesis (Lynn K et al., 1999). Object of the invention

本发明的一个目的是提供分离的新的多肽一翻译起始因子辅助因子 28 以及其片段、 类似物和衍生物。  It is an object of the present invention to provide an isolated novel polypeptide-translation initiation factor cofactor 28 as well as fragments, analogs and derivatives thereof.

本发明的另一个目的是提供编码该多肽的多核苷酸。  Another object of the invention is to provide a polynucleotide encoding the polypeptide.

本发明的另一个目的是提供含有编码翻译起始因子辅助因子 28 的多核苷 酸的重组载体。  Another object of the present invention is to provide a recombinant vector containing a polynucleotide encoding a translation initiation factor cofactor 28.

本发明的另一个目的是提供含有编码翻译起始因子辅助因子 28 的多核苷 酸的基因工程化宿主细胞。  Another object of the invention is to provide a genetically engineered host cell containing a polynucleotide encoding a translation initiation factor cofactor 28.

本发明的另一个目的是提供生产翻译起始因子辅助因子 28的方法。  Another object of the present invention is to provide a method for producing a translation initiation cofactor 28.

本发明的另一个目的是提供针对本发明的多肽一翻译起始因子辅助因子 28的抗体。  Another object of the present invention is to provide antibodies against the polypeptide-translation initiation factor cofactor 28 of the present invention.

本发明的另一个目的是提供了针对本发明多肽一翻译起始因子辅助因子 28的模拟化合物、 拮抗剂、 激动剂、 抑制剂。  Another object of the present invention is to provide mimic compounds, antagonists, agonists, and inhibitors directed to the polypeptide-translation initiation factor cofactor 28 of the present invention.

本发明的另一个目的是提供诊断治疗与翻译起始因子辅助因子 28 异常相 关的疾病的方法。 发明概要 在本发明的第一方面, 提供新颖的分离出的翻译起始因子辅助因子 28, 该 多肽是人源的, 它包含: 具有 SEQ ID NO: 2 氨基酸序列的多肽、 或其保守性变 异多肽、 或其活性片段、 或其活性衍生物、 类似物。 较佳地, 该多肽是具有 SEQ ID NO: 2氨基酸序列的多肽, Another object of the present invention is to provide a method for diagnosing and treating diseases related to abnormalities of translation initiation factor cofactor 28. Summary of invention In a first aspect of the present invention, a novel isolated translation initiation factor cofactor 28 is provided. The polypeptide is of human origin and comprises: a polypeptide having the amino acid sequence of SEQ ID NO: 2, or a conservative variant polypeptide thereof, Or its active fragment, or its active derivative, analog. Preferably, the polypeptide is a polypeptide having the amino acid sequence of SEQ ID NO: 2,

在本发明的第二方面, 提供编码分离的这些多肽的多核苷酸, 该多核苷酸 包含一核苷酸序列, 该核苷酸序列与选自下组的 种核苷酸序列有至少 80%相 同性: (a)编码上述翻译起始因子辅助因子 28的多核苷酸; (b)与多核苷酸 (a) 互补的多核苷酸。 较佳地, 该多核苷酸编码具有 SEQ ID NO: 2 所示氨基酸序列 的多肽。 更佳地, 该多核苷酸的序列是选自下组的一种: (a)具有 SEQ ID N0: 1 中 878-1636位的序列; 和(b)具有 SEQ ID NO: 1中 1-2951位的序列。  In a second aspect of the present invention, there is provided a polynucleotide encoding these isolated polypeptides, the polynucleotide comprising a nucleotide sequence, the nucleotide sequence and at least 80% of the nucleotide sequence selected from the group Identities: (a) a polynucleotide encoding the aforementioned translation initiation factor cofactor 28; (b) a polynucleotide complementary to the polynucleotide (a). Preferably, the polynucleotide encodes a polypeptide having the amino acid sequence shown in SEQ ID NO: 2. More preferably, the sequence of the polynucleotide is one selected from the group consisting of: (a) a sequence having positions 878-1636 in SEQ ID NO: 1; and (b) a sequence having 1-2951 in SEQ ID NO: 1 Sequence of bits.

在本发明的第三方面, 提供了含有上述多核苷酸的载体, 以及被该载体转 化或转导的宿主细胞或者被上述多核苷酸直接转化或转导的宿主细胞。  In a third aspect of the present invention, there are provided a vector containing the above polynucleotide, and a host cell transformed or transduced by the vector or a host cell directly transformed or transduced by the above polynucleotide.

本发明的其它方面由于本文的技术的公开, 对本领域的技术人员而言是显而 易见的。  Other aspects of the invention will be apparent to those skilled in the art from the disclosure of the techniques herein.

附图说明 BRIEF DESCRIPTION OF THE DRAWINGS

下列附图用于说明本发明的具体实施方案, 而不用于限定由权利要求书 所界定的本发明范围。  The following drawings are used to illustrate specific embodiments of the present invention, but not to limit the scope of the present invention as defined by the claims.

图 1是本发明翻译起始因子辅助因子 28和家兔的转录起始因子 e lF2C的氨 基酸序列同源性比较图。 上方序列是翻译起始因子辅助因子 28 , 下方序列是家 兔的转录起始因子 e lF2C。 相同氨基酸在两个序列间用单字符氨基酸表示, 相 似氨基酸用 "+" 表示。  Fig. 1 is a comparison diagram of amino acid sequence homology of translation initiation factor cofactor 28 of the present invention and rabbit transcription initiation factor eF2C. The upper sequence is the translation initiation factor cofactor 28, and the lower sequence is the rabbit transcription initiation factor e lF2C. Identical amino acids are represented by single-character amino acids between the two sequences, and similar amino acids are represented by "+".

图 2 为分离的翻译起始因子辅助因子 28 的聚丙烯酰胺凝胶电泳图 (SDS - PAGE ) 。 28kDa为蛋白质的分子量。 箭头所指为分离出的蛋白条带。  Figure 2 shows the polyacrylamide gel electrophoresis (SDS-PAGE) of the isolated translation initiation factor cofactor 28. 28kDa is the molecular weight of the protein. The arrow indicates the isolated protein band.

发明内容 Summary of the Invention

如本发明所用, "分离的" 是指物质从其原始环境中分离出来 (如果是天 然的物质, 原始环境即是天然环境) 。 如活体细胞内的天然状态下的多聚核苷 酸和多肽是没有分离纯化的, 但同样的多聚核苷酸或多肽如从天然状态中同存 在的其他物质中分开, 则为分离纯化的。  As used herein, "isolated" refers to the separation of a substance from its original environment (if it is a natural substance, the original environment is the natural environment). For example, polynucleotides and polypeptides in a natural state in a living cell are not isolated and purified, but the same polynucleotides or polypeptides are separated and purified if they are separated from other substances in the natural state .

如本文所用, "分离的翻译起始因子辅助因子 28" 是指翻译起始因子辅助 因子 28 基本上不含天然与其相关的其它蛋白、 脂类、 糖类或其它物质。 本领 域的技术人员能用标准的蛋白质纯化技术纯化翻译起始因子辅助因子 28。 基本 上纯的多肽在非还原聚丙烯酰胺凝胶上能产生单一的主带。 翻译起始因子辅助 因子 28多肽的纯度能用氨基酸序列分析。 As used herein, "isolated translation initiation factor cofactor 28" means translation initiation factor helper Factor 28 is essentially free of other proteins, lipids, sugars or other substances with which it is naturally associated. Those skilled in the art can purify the translation initiation factor cofactor 28 using standard protein purification techniques. Substantially pure polypeptides can produce a single main band on a non-reducing polyacrylamide gel. The purity of the translation initiation factor cofactor 28 polypeptide can be analyzed by amino acid sequence.

本发明提供了一种新的多肽一翻译起始因子辅助因子 28, 其基本上是由 SEQ ID NO: 2所示的氨基酸序列组成的。 本发明的多肽可以是重组多肽、 天然多肽、 合成多肽, 优选重组多肽。 本发明的多肽可以是天然纯化的产物, 或是化学合成 的产物, 或使用重组技术从原核或真核宿主 (例如, 细菌、 酵母、 高等植物、 昆 虫和哺乳动物细胞)中产生。 根据重组生产方案所用的宿主, 本发明的多肽可以 是糖基化的, 或可以是非糖基化的。 本发明的多肽还可包括或不包括起始的甲硫 氨酸残基。  The present invention provides a new polypeptide-translation initiation factor cofactor 28, which basically consists of the amino acid sequence shown in SEQ ID NO: 2. The polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide, and preferably a recombinant polypeptide. The polypeptide of the present invention may be a naturally purified product or a chemically synthesized product, or may be produced from a prokaryotic or eukaryotic host (for example, bacteria, yeast, higher plants, insects, and mammalian cells) using recombinant technology. Depending on the host used in the recombinant production protocol, the polypeptide of the invention may be glycosylated, or it may be non-glycosylated. Polypeptides of the invention may also include or exclude starting methionine residues.

本发明还包括翻译起始因子辅助因子 28 的片段、 衍生物和类似物。 如本 发明所用, 术语 "片段" 、 "衍生物" 和 "类似物" 是指基本上保持本发明的 翻译起始因子辅助因子 28 相同的生物学功能或活性的多肽。 本发明多肽的片 段、 衍生物或类似物可以是: ( I ) 这样一种, 其中一个或多个氨基酸残基被 保守或非保守氨基酸残基 (优选的是保守氨基酸残基) 取代, 并且取代的氨基 酸可以是也可以不是由遗传密码子编码的; 或者 ( Π ) 这样一种, 其中一个或 多个氨基酸残基上的某个基团被其它基团取代包含取代基; 或者 ( Π Ι ) 这样 一种, 其中成熟多肽与另一种化合物 (比如延长多肽半衰期的化合物, 例如聚 乙二醇) 融合; 或者 ( IV ) 这样一种, 其中附加的氨基酸序列融合进成熟多肽 而形成的多肽序列 (如前导序列或分泌序列或用来纯化此多肽的序列或蛋白原 序列) 通过本文的阐述, 这样的片段、 衍生物和类似物被认为在本领域技术人 员的知识范围之内。  The invention also includes fragments, derivatives and analogs of the translation initiation factor cofactor 28. As used in the present invention, the terms "fragment", "derivative" and "analog" refer to a polypeptide that substantially maintains the same biological function or activity of the translation initiation factor cofactor 28 of the present invention. A fragment, derivative or analog of the polypeptide of the present invention may be: (I) a kind in which one or more amino acid residues are substituted with conservative or non-conservative amino acid residues (preferably conservative amino acid residues), and the substitution The amino acid may or may not be encoded by a genetic codon; or (Π) a type in which a group on one or more amino acid residues is replaced by another group to include a substituent; or (Π Ι) Such a polypeptide sequence in which the mature polypeptide is fused with another compound (such as a compound that prolongs the half-life of the polypeptide, such as polyethylene glycol); or (IV) a polypeptide sequence in which an additional amino acid sequence is fused into the mature polypeptide (Such as a leader sequence or a secreted sequence or a sequence used to purify this polypeptide or a protease sequence) As set forth herein, such fragments, derivatives, and analogs are considered to be within the knowledge of those skilled in the art.

本发明提供了分离的核酸 (多核苷酸) , 基本由编码具有 SEQ ID NO: 2 氨 基酸序列的多肽的多核苷酸组成。 本发明的多核苷酸序列包括 SEQ ID N0: 1 的 核苷酸序列。 本发明的多核苷酸是从人胎脑组织的 cDNA 文库中发现的。 它包 含的多核苷酸序列全长为 2951个碱基, 其开放读框( 878—— 1636 )编码了 252 个氨基酸。根据氨基酸序列同源比较发现,此多肽与家兔的转录起始因子 e lF2C 有 80%的同源性, 可推断出该翻译起始因子辅助因子 28 具有家兔的转录起始 因子 e lF2C相似的结构和功能。 The present invention provides an isolated nucleic acid (polynucleotide), which basically consists of a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID NO: 2. The polynucleotide sequence of the present invention includes the nucleotide sequence of SEQ ID NO: 1. The polynucleotide of the present invention is found from a cDNA library of human fetal brain tissue. It contains a polynucleotide sequence with a total length of 2951 bases, and its open reading frame (878-1636) encodes 252 amino acids. According to the amino acid sequence homology comparison, it was found that this polypeptide has 80% homology with rabbit's transcription initiation factor e lF2C. It can be inferred that the translation initiation factor cofactor 28 has rabbit's transcription initiation The factor e lF2C has a similar structure and function.

本发明的多核苷酸可以是 D 形式或是 RNA形式。 DNA形式包括 cD 、 基 因组 DNA或人工合成的 DNA。 DNA 可以是单链的或是双链的。 DM 可以是编码 链或非编码链。 编码成熟多肽的编码区序列可以与 SEQ ID NO: 1所示的编码区 序列相同或者是简并的变异体。 如本发明所用, "简并的变异体" 在本发明中 是指编码具有 SEQ ID NO: 2的蛋白质或多肽, 但与 SEQ ID NO: 1所示的编码区 序列有差别的核酸序列。  The polynucleotide of the present invention may be in the D form or the RNA form. DNA forms include cD, genomic DNA, or synthetic DNA. DNA can be single-stranded or double-stranded. DM can be coded or non-coded. The coding region sequence encoding a mature polypeptide may be the same as the coding region sequence shown in SEQ ID NO: 1 or a degenerate variant. As used herein, a "degenerate variant" refers to a nucleic acid sequence encoding a protein or polypeptide having SEQ ID NO: 2 but different from the coding region sequence shown in SEQ ID NO: 1 in the present invention.

编码 SEQ ID NO: 2的成熟多肽的多核苷酸包括: 只有成熟多肽的编码序列; 成熟多肽的编码序列和各种附加编码序列; 成熟多肽的编码序列 (和任选的附 加编码序列) 以及非编码序列。  The polynucleotide encoding the mature polypeptide of SEQ ID NO: 2 includes: only the coding sequence of the mature polypeptide; the coding sequence of the mature polypeptide and various additional coding sequences; the coding sequence of the mature polypeptide (and optional additional coding sequences); Coding sequence.

术语 "编码多肽的多核苷酸" 是指包括编码此多肽的多核苷酸和包括附加 编码和 /或非编码序列的多核苷酸。  The term "polynucleotide encoding a polypeptide" refers to a polynucleotide comprising the polypeptide and a polynucleotide comprising additional coding and / or non-coding sequences.

本发明还涉及上述描述多核苷酸的变异体, 其编码与本发明有相同的氨基 酸序列的多肽或多肽的片断、 类似物和衍生物。 此多核苷酸的变异体可以是天 然发生的等位变异体或非天然发生的变异体。 这些核苷酸变异体包括取代变异 体、 缺失变异体和插入变异体。 如本领域所知的, 等位变异体是一个多核苷酸 的替换形式, 它可能是一个或多个核苷酸的取代、 缺失或插入, 但不会从实质 上改变其编码的多肽的功能。  The invention also relates to variants of the polynucleotides described above, which encode polypeptides or fragments, analogs and derivatives of polypeptides having the same amino acid sequence as the invention. Variants of this polynucleotide can be naturally occurring allelic variants or non-naturally occurring variants. These nucleotide variants include substitution variants, deletion variants, and insertion variants. As known in the art, an allelic variant is an alternative form of a polynucleotide that may be a substitution, deletion, or insertion of one or more nucleotides, but does not substantially change the function of the polypeptide it encodes .

本发明还涉及与以上所描述的序列杂交的多核苷酸 (两个序列之间具有至 少 50%, 优选具有 70%的相同性) 。 本发明特别涉及在严格条件下与本发明所 述多核苷酸可杂交的多核苷酸。 在本发明中, "严格条件" 是指: (1)在较低 离子强度和较高温度下的杂交和洗脱, 如 0. 2xSSC, 0. 1%SDS,60 °C ;或(2)杂交 时加用变性剂, 如 50。/« (ν/ν)甲酰胺, 0. 1%小牛血清 / 0. l%Ficol l , 42 'C等; 或 (3)仅在两条序列之间的相同性至少在 95%以上,更好是 97%以上时才发生杂 交。 并且, 可杂交的多核苷酸编码的多肽与 SEQ ID NO: 2 所示的成熟多肽有 相同的生物学功能和活性。  The invention also relates to a polynucleotide that hybridizes to the sequence described above (having at least 50%, preferably 70% identity, between the two sequences). The present invention particularly relates to polynucleotides that can hybridize to the polynucleotides of the present invention under stringent conditions. In the present invention, "strict conditions" means: (1) hybridization and elution at lower ionic strength and higher temperature, such as 0.2xSSC, 0.1% SDS, 60 ° C; or (2) Add a denaturant such as 50 when hybridizing. / «(Ν / ν) formamide, 0.1% calf serum / 0.1% Ficol l, 42'C, etc .; or (3) the identity between the two sequences is at least 95%, More preferably, hybridization does not occur until 97% or more. In addition, the polypeptide encoded by the hybridizable polynucleotide has the same biological function and activity as the mature polypeptide shown in SEQ ID NO: 2.

本发明还涉及与以上所描述的序列杂交的核酸片段。 如本发明所用, "核 酸片段"的长度至少含 10个核苷酸, 较好是至少 20-30个核苷酸, 更好是至少 50-60个核苷酸, 最好是至少 100个核苷酸以上。 核酸片段也可用于核酸的扩 增技术(如 PCR)以确定和 /或分离编码翻译起始因子辅助因子 28的多核苷酸。 本发明中的多肽和多核苷酸优选以分离的形式提供, 更佳地被纯化至均质。 本发明的编码翻译起始因子辅助因子 28 的特异的多核苷酸序列能用多种 方法获得。 例如, 用本领域熟知的杂交技术分离多核苷酸。 这些技术包括但不 局限于: 1)用探针与基因组或 cDNA文库杂交以检出同源的多核苷酸序列, 和 2) 表达文库的抗体筛选以检出具有共同结构特征的 隆的多核苷酸片段。 The invention also relates to nucleic acid fragments that hybridize to the sequences described above. As used in the present invention, a "nucleic acid fragment" contains at least 10 nucleotides in length, preferably at least 20-30 nucleotides, more preferably at least 50-60 nucleotides, and most preferably at least 100 nuclei. Glycylic acid or more. Nucleic acid fragments can also be used for nucleic acid amplification Amplification techniques (eg, PCR) to identify and / or isolate a polynucleotide encoding a translation initiation factor cofactor 28. The polypeptides and polynucleotides in the present invention are preferably provided in an isolated form and are more preferably purified to homogeneity. The specific polynucleotide sequence encoding the translation initiation factor cofactor 28 of the present invention can be obtained by various methods. For example, polynucleotides are isolated using hybridization techniques well known in the art. These techniques include, but are not limited to: 1) hybridization of probes to genomic or cDNA libraries to detect homologous polynucleotide sequences, and 2) antibody screening of expression libraries to detect polynucleosides with common structural characteristics Acid fragments.

本发明的 DNA片段序列也能用下列方法获得: 1)从基因组 DNA分离双链 DM 序列; 2)化学合成 DNA序列以获得所述多肽的双链 DNA„  The DNA fragment sequence of the present invention can also be obtained by the following methods: 1) separating the double-stranded DM sequence from the genomic DNA; 2) chemically synthesizing the DNA sequence to obtain the double-stranded DNA of the polypeptide.

上述提到的方法中, 分离基因组 DNA 最不常用。 DNA序列的直接化学合成 是经常选用的方法。 更经常选用的方法是 cDNA序列的分离。 分离感兴趣的 cDNA 的标准方法是从高表达该基因的供体细胞分离 mRNA 并进行逆转录, 形成质粒 或噬菌体 cDNA文库。 提取 mRNA的方法已有多种成熟的技术, 试剂盒也可从商 业途径获得(Q iagene)。 而构建 cDNA 文库也是通常的方法(Sambrook, e t a l., Mo l ecu lar Clon ing, A Labora tory Manua l , Co ld Spr ing Harbor Labora tory. New York , 1989)。还可得到商业供应的 cDNA文库,如 Clontech公司的不同 cDNA 文库。 当结合使用聚合酶反应技术时, 即使极少的表达产物也能克隆。  Of the methods mentioned above, genomic DNA isolation is the least commonly used. Direct chemical synthesis of DNA sequences is often the method of choice. The more commonly used method is the isolation of cDNA sequences. The standard method for isolating the cDNA of interest is to isolate mRNA from donor cells that overexpress the gene and perform reverse transcription to form a plasmid or phage cDNA library. There are many mature techniques for mRNA extraction, and kits are also commercially available (Qiagene). And the construction of cDNA libraries is also a common method (Sambrook, et al., Moleculolar Cloning, A Labora tory Manua, Collspring Harbor Labora tory. New York, 1989). Commercially available cDNA libraries are also available, such as different cDNA libraries from Clontech. When polymerase reaction technology is used in combination, even very small expression products can be cloned.

可用常规方法从这些 cDNA 文库中筛选本发明的基因。 这些方法包括(但不 限于): (l) DNA-DM 或 DM-RNA 杂交; (2)标志基因功能的出现或丧失; (3)测 定翻译起始因子辅助因子 28 的转录本的水平; (4)通过免疫学技术或测定生物 学活性, 来检测基因表达的蛋白产物。 上述方法可单用, 也可多种方法联合应用。  The genes of the present invention can be selected from these cDNA libraries by conventional methods. These methods include (but are not limited to): (l) DNA-DM or DM-RNA hybridization; (2) the presence or absence of a marker gene function; (3) measuring the level of the transcript of the translation initiation factor cofactor 28; ( 4) Detecting gene-expressed protein products by immunological techniques or by measuring biological activity. The above methods can be used singly or in combination.

在第(1)种方法中, 杂交所用的探针是与本发明的多核苷酸的任何一部分 同源, 其长度至少 10个核苷酸, 较好是至少 30个核苷酸, 更好是至少 50个 核苷酸, 最好是至少 100 个核苷酸。 此外, 探针的长度通常在 2000 个核苷酸 之内, 较佳的为 1000 个核苷酸之内。 此处所用的探针通常是在本发明的基因 序列信息的基础上化学合成的 DNA 序列。 本发明的基因本身或者片段当然可以 用作探针。 DNA探针的标记可用放射性同位素, 荧光素或酶(如碱性磷酸酶)等。  In the method (1), the probe used for hybridization is homologous to any part of the polynucleotide of the present invention, and its length is at least 10 nucleotides, preferably at least 30 nucleotides, more preferably At least 50 nucleotides, preferably at least 100 nucleotides. In addition, the length of the probe is usually within 2000 nucleotides, preferably within 1000 nucleotides. The probe used here is usually a DNA sequence chemically synthesized based on the gene sequence information of the present invention. The genes or fragments of the present invention can of course be used as probes. DNA probes can be labeled with radioisotopes, luciferin, or enzymes (such as alkaline phosphatase).

在第(4)种方法中, 检测翻译起始因子辅助因子 28基因表达的蛋白产物可 用免疫学技术如 Wes tern印迹法, 放射免疫沉淀法, 酶联免疫吸附法 (ELISA)等。  In the (4) method, the protein product of the translation initiation factor cofactor 28 gene expression can be detected by immunological techniques such as Western blotting, radioimmunoprecipitation, and enzyme-linked immunosorbent assay (ELISA).

应 用 PCR 技术 扩增 DNA/RNA 的 方 法 (Sa iki , et a l. Sc ience 1985; 230: 1350-1354)被优选用于获得本发明的基因。 特别是很难从文库中得 到全长的 cDNA时,可优选使用 RACE法(RACE - cDNA末端快速扩增法),用于 PCR 的引物可根据本文所公开的本发明的多核苷酸序列信息适当地选择, 并可用常 规方法合成。 可用常规方法如通过凝胶电泳分离和纯化扩增的 DNA/R 片段。 Method for Amplifying DNA / RNA by PCR (Sa iki, et a l. Sc ience 1985; 230: 1350-1354) are preferred for obtaining the genes of the invention. In particular, when it is difficult to obtain a full-length cDNA from a library, the RACE method (RACE-Rapid Amplification of cDNA Ends) can be preferably used. The primers used for PCR can be appropriately based on the polynucleotide sequence information of the present invention disclosed herein. Select and synthesize using conventional methods. The amplified DNA / R fragment can be isolated and purified by conventional methods such as by gel electrophoresis.

如上所述得到的本发明的基因, 或者各种 DNA 片段等的多核苷酸序列可用 常规方法如双脱氧链终止法(Sanger et a l. PNAS , 1977 , 74: 5463-5467)测 定。 这类多核苷酸序列测定也可用商业测序试剂盒等。 为了获得全长的 cDNA 序列, 测序需反复进行。 有时需要测定多个克隆的 cDNA 序列, 才能拼接成全 长的 cDNA序列。  The polynucleotide sequence of the gene of the present invention or various DNA fragments and the like obtained as described above can be measured by a conventional method such as dideoxy chain termination method (Sanger et al. PNAS, 1977, 74: 5463-5467). Such polynucleotide sequences can also be determined using commercial sequencing kits and the like. In order to obtain the full-length cDNA sequence, sequencing needs to be repeated. Sometimes it is necessary to determine the cDNA sequence of multiple clones in order to splice into a full-length cDNA sequence.

本发明也涉及包含本发明的多核苷酸的载体, 以及用本发明的载体或直接 用翻译起始因子辅助因子 28 编码序列经基因工程产生的宿主细胞, 以及经重 组技术产生本发明所述多肽的方法。  The present invention also relates to a vector comprising the polynucleotide of the present invention, and a host cell produced by genetic engineering using the vector of the present invention or directly using a translation initiation factor cofactor 28 coding sequence, and the recombinant technology to produce the polypeptide of the present invention Methods.

本发明中, 编码翻译起始因子辅助因子 28 的多核苷酸序列可插入到载体 中, 以构成含有本发明所述多核苷酸的重组载体。 术语 "载体" 指本领域熟知 的细菌质粒、 噬菌体、 酵母质粒、 植物细胞病毒、 哺乳动物细胞病毒如腺病毒、 逆转录病毒或其它载体。 在本发明中适用的载体包括但不限于: 在细菌中表达 的基于 T7 启动子的表达载体(Rosenberg, et a l. Gene, 1987, 56: 125); 在 哺乳动物细胞中表达的 pMSXND 表达载体(Lee and Na thans, J Bio Chem. 263: 3521 , 1988)和在昆虫细胞中表达的来源于杆状病毒的载体。 总之, 只要能 在宿主体内复制和稳定, 任何质粒和载体都可以用于构建重组表达载体。 表达 载体的一个重要特征是通常含有复制起始点、 启动子、 标记基因和翻译调控元件, 本领域的技术人员熟知的方法能用于构建含编码翻译起始因子辅助因子 28 的 DNA序列和合适的转录 /翻译调控元件的表达载体。这些方法包括体外重组 DNA 技术、 DNA合成技术、 体内重组技术等(Sambroook, et a l. Molecular Cloning, A Laboratory Manua l, Cold Spr ing Harbor Laboratory. New York, 1989) . 所述的 DNA序列可有效连接到表达载体中的适当启动子上, 以指导 mRNA合成。 这些启动子的代表性例子有: 大肠杆菌的 lac 或 trp 启动子; λ噬菌体的 PL 启动子; 真核启动子包括 CMV 立即早期启动子、 HSV 胸苷激酶启动子、 早期和 晚期 SV40启动子、 反转录病毒的 LTRs 和其它一些已知的可控制基因在原核细 胞或真核细胞或其病毒中表达的启动子。 表达载体还包括翻译起始用的核糖体 结合位点和转录终止子等。 在载体中插入增强子序列将会使其在高等真核细胞 中的转录得到增强。 增强子是 D 表达的顺式作用因子, 通常大约有 10到 300 个碱基对, 作用于启动子以增强基因的转录。 可举的例子包括在复制起始点晚 期一侧的 100 到 270个碱基对的 SV40增强子、 在复制起始点晚期一侧的多瘤 增强子以及腺病毒增强子等。 In the present invention, a polynucleotide sequence encoding a translation initiation factor cofactor 28 may be inserted into a vector to constitute a recombinant vector containing the polynucleotide of the present invention. The term "vector" refers to bacterial plasmids, phages, yeast plasmids, plant cell viruses, mammalian cell viruses such as adenoviruses, retroviruses, or other vectors well known in the art. Vectors suitable for use in the present invention include, but are not limited to: T7 promoter-based expression vectors (Rosenberg, et al. Gene, 1987, 56: 125) expressed in bacteria; pMSXND expression vectors expressed in mammalian cells (Lee and Na thans, J Bio Chem. 263: 3521, 1988) and baculovirus-derived vectors expressed in insect cells. In short, as long as it can be replicated and stabilized in a host, any plasmid and vector can be used to construct a recombinant expression vector. An important feature of an expression vector is that it usually contains a replication origin, a promoter, a marker gene, and translation control elements. Methods well known to those skilled in the art can be used to construct a DNA sequence containing a translation initiation factor cofactor 28 and a suitable Expression vector for transcriptional / translational regulatory elements. These methods include in vitro recombinant DNA technology, DNA synthesis technology, in vivo recombination technology, etc. (Sambroook, et al. Molecular Cloning, A Laboratory Manua 1, Cold Spring Harbor Laboratory. New York, 1989). The described DNA sequence is effective Ligation to an appropriate promoter in the expression vector to direct mRNA synthesis. Representative examples of these promoters are: the lac or trp promoter of E. coli; the PL promoter of lambda phage; eukaryotic promoters include the CMV immediate early promoter, the HSV thymidine kinase promoter, the early and late SV40 promoters, Retroviral LTRs and other known controllable genes in prokaryotic cells Promoters expressed in cells or eukaryotic cells or their viruses. The expression vector also includes a ribosome binding site and a transcription terminator for translation initiation. Insertion of enhancer sequences into the vector will enhance its transcription in higher eukaryotic cells. Enhancers are cis-acting factors for D expression, usually about 10 to 300 base pairs that act on promoters to enhance gene transcription. Illustrative examples include SV40 enhancers of 100 to 270 base pairs on the late side of the origin of replication, polyoma enhancers on the late side of the origin of replication, and adenoviral enhancers.

此外, 表达载体优选地包含一个或多个选择性标记基因, 以提供用于选择 转化的宿主细胞的表型性状, 如真核细胞培养用的二氢叶酸还原酶、 新霉素抗 性以及绿色荧光蛋白(GFP), 或用于大肠杆菌的四环素或氨苄青霉素抗性等。  In addition, the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase, neomycin resistance, and green for eukaryotic cell culture. Fluorescent protein (GFP), or tetracycline or ampicillin resistance for E. coli.

本领域一般技术人员都清楚如何选择适当的载体 /转录调控元件 (如启动 子、 增强子等) 和选择性标记基因。  Those of ordinary skill in the art will know how to select appropriate vector / transcription control elements (such as promoters, enhancers, etc.) and selectable marker genes.

本发明中, 编码翻译起始因子辅助因子 28 的多核苷酸或含有该多核苷酸 的重组载体可转化或转导入宿主细胞, 以构成含有该多核苷酸或重组载体的基 因工程化宿主细胞。 术语 "宿主细胞" 指原核细胞, 如细菌细胞; 或是低等真 核细胞, 如酵母细胞; 或是高等真核细胞, 如哺乳动物细胞。 代表性例子有: 大肠杆菌, 链霉菌属; 细菌细胞如鼠伤寒沙门氏菌; 真菌细胞如酵母; 植物细 胞; 昆虫细胞如果蝇 S2或 Sf 9 ; 动物细胞如 CH0、 COS或 Bowes黑素瘤细胞等。  In the present invention, a polynucleotide encoding a translation initiation factor cofactor 28 or a recombinant vector containing the polynucleotide can be transformed or transduced into a host cell to constitute a genetically engineered host cell containing the polynucleotide or the recombinant vector. The term "host cell" refers to a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a mammalian cell. Representative examples are: Escherichia coli, Streptomyces; bacterial cells such as Salmonella typhimurium; fungal cells such as yeast; plant cells; insect cells such as fly S2 or Sf 9; animal cells such as CH0, COS or Bowes melanoma cells.

用本发明所述的 DNA序列或含有所述 DNA序列的重组载体转化宿主细胞可 用本领域技术人员熟知的常规技术进行。 当宿主为原核生物如大肠杆菌时, 能 吸收 DNA 的感受态细胞可在指数生长期后收获, 用 CaCl2法处理, 所用的步骤 在本领域众所周知。 可供选择的是用 MgCl2。 如果需要, 转化也可用电穿孔的 方法进行。 当宿主是真核生物, 可选用如下的 DNA转染方法: 磷酸钙共沉淀法, 或者常规机械方法如显微注射、 电穿孔、 脂质体包装等。 Transformation of a host cell with a DNA sequence described in the present invention or a recombinant vector containing the DNA sequence can be performed using conventional techniques well known to those skilled in the art. When the host is a prokaryote, such as E. coli, competent cells capable of absorbing DNA can be harvested after the exponential growth phase and treated with the CaCl 2 method. The steps used are well known in the art. Alternatively, MgCl 2 is used. If necessary, transformation can also be performed by electroporation. When the host is a eukaryotic organism, the following DNA transfection methods can be used: calcium phosphate co-precipitation method, or conventional mechanical methods such as microinjection, electroporation, and liposome packaging.

通过常规的重组 DM技术, 利用本发明的多核苷酸序列可用来表达或生产 重组的翻译起始因子辅助因子 28 (Sc ience , 1984; 224: 1431)。 一般来说有以 下步骤:  Using conventional recombinant DM technology, the polynucleotide sequence of the present invention can be used to express or produce a recombinant translation initiation factor cofactor 28 (Science, 1984; 224: 1431). Generally there are the following steps:

(1) 用本发明的编码人 翻译起始因子辅助因子 28 的多核苷酸(或变异 体), 或用含有该多核苷酸的重组表达载体转化或转导合适的宿主细胞;  (1) using a polynucleotide (or variant) encoding the human translation initiation factor cofactor 28 of the present invention, or transforming or transducing a suitable host cell with a recombinant expression vector containing the polynucleotide;

(2) 在合适的培养基中培养宿主细胞; (3) 从培养基或细胞中分离、 纯化蛋白质。 (2) culturing host cells in a suitable medium; (3) Isolate and purify protein from culture medium or cells.

在步骤 ( 2 ) 中, 根据所用的宿主细胞, 培养中所用的培养基可选自各种 常规培养基。 在适于宿主细胞生长的条件下进行培养。 当宿主细胞生长到适当 的细胞密度后, 用合适的方法(如温度转换或化学诱导)诱导选择的启动子, 将 细胞再培养一段时间。  In step (2), depending on the host cell used, the medium used in the culture may be selected from various conventional mediums. Culture is performed under conditions suitable for host cell growth. After the host cells have grown to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.

在步骤 ( 3 ) 中, 重组多肽可包被于细胞内、 .或在细胞膜上表达、 或分泌 到细胞外。 如果需要, 可利用其物理的、 化学的和其它特性通过各种分离方法 分离和纯化重组的蛋白。 这些方法是本领域技术人员所熟知的。 这些方法包括 但并不限于: 常规的复性处理、 蛋白沉淀剂处理(盐析方法)、 离心、 渗透破菌、 超声波处理、 超离心、 分子筛层析(凝胶过滤)、 吸附层析、 离子交换层析、 高 效液相层析(HPLC)和其它各种液相层析技术及这些方法的结合。  In step (3), the recombinant polypeptide may be coated in a cell, expressed on a cell membrane, or secreted outside the cell. If necessary, the recombinant protein can be isolated and purified by various separation methods using its physical, chemical and other properties. These methods are well known to those skilled in the art. These methods include, but are not limited to: conventional renaturation treatment, protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion Exchange chromatography, high performance liquid chromatography (HPLC) and various other liquid chromatography techniques and combinations of these methods.

本发明的多肽以及该多肽的拮抗剂、 激动剂和抑制剂可直接用于疾病治 疗, 例如, 可治疗恶性肿瘤、 肾上腺缺乏症、 皮肤病、 各类炎症、 HIV 感染和 免疫性疾病等。  The polypeptides of the present invention, as well as antagonists, agonists and inhibitors of the polypeptides, can be directly used in the treatment of diseases, for example, they can treat malignant tumors, adrenal deficiency, skin diseases, various types of inflammation, HIV infection, and immune diseases.

由于翻译起始因子辅助因子 eIF2C 的活性在真核生物组织中广泛存在, 如 家兔网状组织、 家兔肾、 鼠腹水瘤细胞、 小麦胚芽、 酵母中, 提示 eIF2C 基因 在真核生物组织尤其是网状组织、 肿瘤组织中广泛表达。 故本发明的人翻译起 始因子辅助因子 28 基因及其表达产物的异常将产生各种疾病尤其是网状组织 疾病、 各种肿瘤产生。 这些疾病包括但不限于: 脾肿大, 脾功能亢进症, 肾间 质疾病如间质性肾炎、 肾小管性酸中毒, 酒精性肝硬化, 基底上皮肿瘤, 鱗形 上皮肿瘤, 粘液性肿瘤, 纤维瘤如网状组织细胞瘤、 纤维组织细胞瘤、 恶性纤 维组织细胞瘤, 脂肪瘤, 软骨瘤, 血管瘤, 淋巴瘤, 造血组织肿瘤如白血病, 神经瘤, 腺瘤。  Because the activity of the translation initiation cofactor eIF2C is widely present in eukaryotic tissues, such as rabbit reticulum, rabbit kidney, mouse ascites tumor cells, wheat germ, and yeast, it suggests that the eIF2C gene is particularly important in eukaryotic tissues. It is widely expressed in reticular tissue and tumor tissue. Therefore, the abnormality of the translation initiation factor cofactor 28 gene and its expression product by the human of the present invention will cause various diseases, especially reticular tissue diseases and various tumors. These diseases include, but are not limited to: splenomegaly, hypersplenism, renal interstitial diseases such as interstitial nephritis, tubular acidosis, alcoholic cirrhosis, basal epithelial tumors, squamous epithelial tumors, mucinous tumors, fibers Tumors such as reticular histiocytoma, fibrohistiocytoma, malignant fibrohistiocytoma, lipoma, chondroma, hemangioma, lymphoma, hematopoietic tumors such as leukemia, neuroma, adenoma.

由于 Lynn K 等人发现 eIF2C在胚胎形成中有重要作用。 故推测本发明的 人翻译起始因子辅助因子 28 基因及其表达产物的异常将产生各种胚胎发育紊 乱及其它先天畸形症。 这些疾病包括但不限于: 脊柱裂、 颅脑裂、 无脑畸形、 脑膨出、 孔脑畸形、 先天性脑积水、 导水管畸形、 软骨发育不全性侏儒病、 脊 柱骨骺发育不良症、 假软骨发育不全症、 Langer-G iedion 综合症、 漏斗胸、 生殖腺发育不全、 先天性肾上腺增生、 尿道上裂、 隐睾、 伴有身材矮小的畸形 综合症如 Conradi综合症与 Danbol t-Clos s综合症、 先天性青光眼或白内障、 先天性晶状体位置异常、 先天性小睑裂、 视网膜发育异常、 先天性视神经萎缩、 先天性感觉神经性听觉损失、 裂手裂脚症、 畸胎、 Wi l l iams综合症、 Alag i l l e 综合症、 贝魏二氏综合症。 Because Lynn K et al found that eIF2C has an important role in embryogenesis. Therefore, it is speculated that the abnormality of the human translation initiation factor cofactor 28 gene and its expression product of the present invention will cause various embryonic developmental disorders and other congenital malformations. These diseases include, but are not limited to: spina bifida, craniocerebral fissure, anencephaly malformation, cerebral bulge, foramencephalic malformation, congenital hydrocephalus, aqueduct malformation, dwarfism of cartilage hypoplasia, spinal epiphyseal dysplasia, false Cartilage hypoplasia, Langer-Giedion syndrome, funnel chest, gonad hypoplasia, congenital adrenal hyperplasia, upper urethra, cryptorchidism, with short stature Syndromes such as Conradi syndrome and Danbol t-Clos s syndrome, congenital glaucoma or cataract, congenital lens position abnormality, congenital blepharoplasia, retinal dysplasia, congenital optic nerve atrophy, congenital sensory neurological hearing loss, Cleft-hand and cracked feet, teratosis, Wi ll iams syndrome, Alag ille syndrome, Bayer syndrome.

本发明也提供了筛选化合物以鉴定提高(激动剂)或阻遏(拮抗剂)翻译起始 因子辅助因子 28 的药剂的方法。 激动剂提高翻译起始因子辅助因子 28刺激细 胞增殖等生物功能, 而拮抗剂阻止和治疗与细胞过度增殖有关的紊乱如各种癌 症。 例如, 能在药物的存在下, 将哺乳动物细胞或表达翻译起始因子辅助因子 28 的膜制剂与标记的翻译起始因子辅助因子 28 —起培养。 然后测定药物提高 或阻遏此相互作用的能力。  The invention also provides methods for screening compounds to identify agents that increase (agonist) or suppress (antagonist) translation initiation factor cofactor 28. Agonists enhance translation initiation factor cofactor 28 to stimulate biological functions such as cell proliferation, while antagonists prevent and treat disorders related to excessive cell proliferation, such as various cancers. For example, mammalian cells or a membrane preparation expressing a translation initiation factor cofactor 28 can be cultured together with a labeled translation initiation factor cofactor 28 in the presence of a drug. The ability of the drug to increase or block this interaction is then determined.

翻译起始因子辅助因子 28 的拮抗剂包括筛选出的抗体、 化合物、 受体缺 失物和类似物等。 翻译起始因子辅助因子 28 的拮抗剂可以与翻译起始因子辅 助因子 28 结合并消除其功能, 或是抑制该多肽的产生, 或是与该多肽的活性 位点结合使该多肽不能发挥生物学功能。  Antagonists of translation initiation factor cofactor 28 include selected antibodies, compounds, receptor deletions, and the like. Antagonists of translation initiation factor cofactor 28 can bind to translation initiation factor cofactor 28 and eliminate its function, or inhibit the production of the polypeptide, or bind to the active site of the polypeptide so that the polypeptide cannot exert its biology Features.

在筛选作为拮抗剂的化合物时, 可以将翻译起始因子辅助因子 28 加入生 物分析测定中, 通过测定化合物对翻译起始因子辅助因子 28 和其受体之间相 互作用的影响来确定化合物是否是拮抗剂。 用上述筛选化合物的同样方法, 可 以筛选出起拮抗剂作用的受体缺失物和类似物。 能与翻译起始因子辅助因子 28 结合的多肽分子可通过筛选由各种可能组合的氨基酸结合于固相物组成的随机 多肽库而获得。 筛选时, 一般应对翻译起始因子辅助因子 28分子进行标记。  When screening compounds as antagonists, translation initiation factor cofactor 28 can be added to the bioanalytical assay to determine whether the compound is a compound by measuring the effect of the compound on the interaction between translation initiation factor cofactor 28 and its receptor. Antagonist. Receptor deletions and analogs that act as antagonists can be screened in the same manner as described above for screening compounds. Polypeptide molecules capable of binding to translation initiation factor cofactor 28 can be obtained by screening a random peptide library composed of various possible combinations of amino acids bound to a solid phase. When screening, the 28 molecules of translation initiation cofactors should generally be labeled.

本发明提供了用多肽, 及其片段、 衍生物、 类似物或它们的细胞作为抗原 以生产抗体的方法。 这些抗体可以是多克隆抗体或单克隆抗体。 本发明还提供 了针对翻译起始因子辅助因子 28 抗原决定簇的抗体。 这些抗体包括(但不限 于): 多克隆抗体、 单克隆抗体、 嵌合抗体、 单链抗体、 Fab片段和 Fab表达文 库产生的片段。  The present invention provides a method for producing antibodies using polypeptides, and fragments, derivatives, analogs or cells thereof as antigens. These antibodies can be polyclonal or monoclonal antibodies. The invention also provides antibodies directed against a translation initiation factor cofactor 28 epitope. These antibodies include (but are not limited to): polyclonal antibodies, monoclonal antibodies, chimeric antibodies, single chain antibodies, Fab fragments, and fragments produced by Fab expression libraries.

多克隆抗体的生产可用翻译起始因子辅助因子 28 直接注射免疫动物 (如 家兔, 小鼠, 大鼠等) 的方法得到, 多种佐剂可用于增强免疫反应, 包括但不 限于弗氏佐剂等。 制备翻译起始因子辅助因子 28 的单克隆抗体的技术包括但 不限于杂交瘤技术(Kohler and Mi l s tein. Nature, 1975, 256: 495-497) , 三 瘤技术, 人 B-细胞杂交瘤技术, EBV-杂交瘤技术等。 将人恒定区和非人源的可 变 区 结 合 的 嵌 合 抗 体 可 用 已 有 的 技 术 生 产 (Morr i son et a l, PNAS, 1985, 81: 6851)。而已有的生产单链抗体的技术 (U. S. Pa t No. 4946778) 也可用于生产抗翻译起始因子辅助因子 28的单链抗体。 The production of polyclonal antibodies can be obtained by directly injecting immunized animals (such as rabbits, mice, rats, etc.) with translation initiation factor cofactor 28. A variety of adjuvants can be used to enhance the immune response, including but not limited to Freund's Agent. Techniques for preparing monoclonal antibodies for translation initiation factor cofactor 28 include, but are not limited to, hybridoma technology (Kohler and Mistein. Nature, 1975, 256: 495-497), three Tumor technology, human B-cell hybridoma technology, EBV-hybridoma technology, etc. Chimeric antibodies that bind human constant regions and non-human-derived variable regions can be produced using existing techniques (Morrison et al, PNAS, 1985, 81: 6851). The existing technology for producing single chain antibodies (US Pat No. 4946778) can also be used to produce single chain antibodies against translation initiation factor cofactor 28.

抗翻译起始因子辅助因子 28 的抗体可用于免疫组织化学技术中, 检测活 检标本中的翻译起始因子辅助因子 28。  Antibodies against translation initiation factor cofactor 28 can be used in immunohistochemical techniques to detect translation initiation factor cofactor 28 in biopsy specimens.

与翻译起始因子辅助因子 28 结合的单克隆抗体也可用放射性同位素标记, 注入体内可跟踪其位置和分布。 这种放射性标记的抗体可作为一种非创伤性诊 断方法用于肿瘤细胞的定位和判断是否有转移。  Monoclonal antibodies that bind to translation initiation factor cofactor 28 can also be labeled with radioisotopes and injected into the body to track their location and distribution. This radiolabeled antibody can be used as a non-invasive diagnostic method to locate tumor cells and determine whether there is metastasis.

抗体还可用于设计针对体内某一特殊部位的免疫毒素。 如翻译起始因子辅 助因子 28高亲和性的单克隆抗体可与细菌或植物毒素(如白喉毒素, 蓖麻蛋白, 红豆碱等)共价结合。 一种通常的方法是用巯基交联剂如 SPDP , 攻击抗体的氨 基, 通过二硫键的交换, 将毒素结合于抗体上, 这种杂交抗体可用于杀灭翻译 起始因子辅助因子 28阳性的细胞。  Antibodies can also be used to design immunotoxins that target a particular part of the body. Such as translation initiation factor cofactor 28. High affinity monoclonal antibodies can covalently bind to bacterial or phytotoxins (such as diphtheria toxin, ricin, ormosine, etc.). A common method is to attack the amino group of an antibody with a thiol cross-linking agent such as SPDP and bind the toxin to the antibody through the exchange of disulfide bonds. This hybrid antibody can be used to kill translation initiation factor cofactor 28 positive cell.

本发明中的抗体可用于治疗或预防与翻译起始因子辅助因子 28 相关的疾 病。 给予适当剂量的抗体可以刺激或阻断翻译起始因子辅助因子 28 的产生或 活性。  The antibodies of the present invention can be used to treat or prevent diseases related to translation initiation factor cofactor 28. Administration of an appropriate dose of antibody can stimulate or block the production or activity of translation initiation factor cofactor 28.

本发明还涉及定量和定位检测翻译起始因子辅助因子 28 水平的诊断试验 方法。 这些试验是本领域所熟知的, 且包括 FISH 测定和放射免疫测定。 试验 中所检测的翻译起始因子辅助因子 28 水平, 可以用作解释翻译起始因子辅助 因子 28在各种疾病中的重要性和用于诊断翻译起始因子辅助因子 28起作用的 疾病。  The invention also relates to a diagnostic test method for quantitatively and locally detecting the level of translation initiation factor cofactor 28. These tests are well known in the art and include FISH assays and radioimmunoassays. The level of translation initiation factor cofactor 28 detected in the test can be used to explain the importance of translation initiation factor cofactor 28 in various diseases and to diagnose diseases in which translation initiation factor cofactor 28 plays a role.

本发明的多肽还可用作肽谱分析, 例如, 多肽可用物理的、 化学或酶进行 特异性切割, 并进行一维或二维或三维的凝胶电泳分析,更好的是进行质谱分析。  The polypeptide of the present invention can also be used for peptide mapping analysis. For example, the polypeptide can be specifically cleaved by physical, chemical or enzymatic analysis, and subjected to one-dimensional or two-dimensional or three-dimensional gel electrophoresis analysis, and more preferably mass spectrometry analysis.

编码翻译起始因子辅助因子 28 的多核苷酸也可用于多种治疗目的。 基因 治疗技术可用于治疗由于翻译起始因子辅助因子 28 的无表达或异常 /无活性表 达所致的细胞增殖、 发育或代谢异常。 重组的基因治疗载体(如病毒载体)可设 计用于表达变异的翻译起始因子辅助因子 28, 以抑制内源性的翻译起始因子辅 助因子 28 活性。 例如, 一种变异的翻译起始因子辅助因子 28 可以是缩短的、 缺失了信号传导功能域的翻译起始因子辅助因子 28 , 虽可与下游的底物结合, 但缺乏信号传导活性。 因此重组的基因治疗载体可用于治疗翻译起始因子辅助 因子 28 表达或活性异常所致的疾病。 来源于病毒的表达载体如逆转录病毒、 腺病毒、 腺病毒相关病毒、 单纯疱疹病毒、 细小病毒等可用于将编码翻译起始 因子辅助因子 28 的多核苷酸转移至细胞内。 构建携带编码翻译起始因子辅助 因子 28 的多核苷酸的重组病毒载体的方法可.见于已有文献(Sambrook, et a l. )。 另外重组编码翻译起始因子辅助因子 28 的多核苷酸可包装到脂质体中 转移至细胞内。 The polynucleotide encoding the translation initiation factor cofactor 28 can also be used for a variety of therapeutic purposes. Gene therapy technology can be used to treat abnormal cell proliferation, development, or metabolism caused by non-expression or abnormal / inactive expression of translation initiation factor cofactor 28. Recombinant gene therapy vectors (such as viral vectors) can be designed to express a variant translation initiation factor cofactor 28 to inhibit endogenous translation initiation factor cofactor 28 activity. For example, a variant translation initiation cofactor 28 may be shortened, Co-factor 28, a translation initiation factor lacking the signaling domain, lacks signaling activity, although it can bind to downstream substrates. Therefore, the recombinant gene therapy vector can be used to treat diseases caused by abnormal expression or activity of translation initiation factor cofactor 28. Virus-derived expression vectors such as retrovirus, adenovirus, adenovirus-associated virus, herpes simplex virus, parvovirus, etc. can be used to transfer a polynucleotide encoding a translation initiation factor cofactor 28 into a cell. Methods for constructing a recombinant viral vector carrying a polynucleotide encoding a translation initiation factor cofactor 28 can be found in existing literature (Sambrook, et al.). In addition, a polynucleotide encoding the translation initiation factor cofactor 28 can be packaged into liposomes and transferred into cells.

多核苷酸导入组织或细胞内的方法包括: 将多核苷酸直接注入到体内组织 中; 或在体外通过载体(如病毒、 噬菌体或质粒等)先将多核苷酸导入细胞中, 再将细胞移植到体内等。  Methods for introducing a polynucleotide into a tissue or cell include: directly injecting the polynucleotide into a tissue in vivo; or introducing the polynucleotide into a cell in vitro through a vector (such as a virus, phage, or plasmid), and then transplanting the cell Into the body and so on.

抑制翻译起始因子辅助因子 28 mRNA的寡核苷酸(包括反义 RNA和 DNA)以 及核酶也在本发明的范围之内。 核酶是一种能特异性分解特定 RNA 的酶样 RNA 分子, 其作用机制是核酶分子与互补的靶 RNA特异性杂交后进行核酸内切作用。 反义的 RNA和 DNA及核酶可用已有的任何 RNA或 DNA合成技术获得, 如固相磷 酸酰胺化学合成法合成寡核苷酸的技术已广泛应用。 反义 RNA 分子可通过编码 该 RNA的 DNA序列在体外或体内转录获得。 这种 DNA序列已整合到载体的 RNA 聚合酶启动子的下游。 为了增加核酸分子的稳定性, 可用多种方法对其进行修 饰, 如增加两侧的序列长度, 核糖核苷之间的连接应用磷酸硫酯键或肽键而非 磷酸二酯键。  Oligonucleotides (including antisense RNA and DNA) and ribozymes that inhibit translation initiation factor cofactor 28 mRNA are also within the scope of the present invention. A ribozyme is an enzyme-like RNA molecule that specifically decomposes specific RNA. Its mechanism of action is that the ribozyme molecule specifically hybridizes with a complementary target RNA for endonucleation. Antisense RNA, DNA, and ribozymes can be obtained using any existing RNA or DNA synthesis technology, such as solid-phase phosphoramidite chemical synthesis to synthesize oligonucleotides. Antisense RNA molecules can be obtained by in vitro or in vivo transcription of a DNA sequence encoding the RNA. This DNA sequence has been integrated downstream of the vector's RNA polymerase promoter. In order to increase the stability of the nucleic acid molecule, it can be modified in a variety of ways, such as increasing the sequence length on both sides, and the linkage between ribonucleosides using phosphate thioester or peptide bonds instead of phosphodiester bonds.

编码翻译起始因子辅助因子 28 的多核苷酸可用于与翻译起始因子辅助因 子 28 的相关疾病的诊断。 编码翻译起始因子辅助因子 28 的多核苷酸可用于检 测翻译起始因子辅助因子 28 的表达与否或在疾病状态下翻译起始因子辅助因 子 28 的异常表达。 如编码翻译起始因子辅助因子 28的 DNA序列可用于对活检 标本进行杂交以判断翻译起始因子辅助因子 28 的表达状况。 杂交技术包括 Southern 印迹法, Northern 印迹法、 原位杂交等。 这些技术方法都是公开的 成熟技术, 相关的试剂盒都可从商业途径得到。 本发明的多核苷酸的一部分或 全部可作为探针固定在微阵列(Microarray)或 DNA 芯片(又称为 "基因芯片" ) 上, 用于分析组织中基因的差异表达分析和基因诊断。 用翻译起始因子辅助因 子 28 特异的引物进行 RNA-聚合酶链反应(RT-PCR)体外扩增也可检测翻译起始 因子辅助因子 28的转录产物。 A polynucleotide encoding a translation initiation factor cofactor 28 can be used to diagnose diseases related to the translation initiation factor cofactor 28. The polynucleotide encoding the translation initiation factor cofactor 28 can be used to detect the expression of the translation initiation factor cofactor 28 or the abnormal expression of the translation initiation factor cofactor 28 in a disease state. For example, the DNA sequence encoding the translation initiation factor cofactor 28 can be used to hybridize biopsy specimens to determine the expression of the translation initiation factor cofactor 28. Hybridization techniques include Southern blotting, Northern blotting, and in situ hybridization. These techniques and methods are publicly available and mature, and related kits are commercially available. Some or all of the polynucleotides of the present invention can be used as probes to be fixed on a microarray or a DNA chip (also referred to as a "gene chip") for analyzing differential expression analysis and gene diagnosis of genes in tissues. Co-factor with translation initiation factor The transcription of the transcription initiation factor cofactor 28 can also be detected by RNA-polymerase chain reaction (RT-PCR) in vitro amplification of specific primers.

检测翻译起始因子辅助因子 28 基因的突变也可用于诊断翻译起始因子辅 助因子 28相关的疾病。 翻译起始因子辅助因子 28 突变的形式包括与正常野生 型翻译起始因子辅助因子 28 DNA 序列相比的点突变、 易位、 缺失、 重组和其 它任何异常等。 可用已有的技术如 Southern 印迹法、 DNA序列分析、 PCR和原 位杂交检测突变。 另外, 突变有可能影响蛋白的表达, 因此用 Nor thern 印迹 法、 Wes tern印迹法可间接判断基因有无突变。  Detecting mutations in the translation initiation factor cofactor 28 gene can also be used to diagnose translation initiation factor cofactor 28-related diseases. Translation initiation factor cofactor 28 mutations include point mutations, translocations, deletions, recombinations, and any other abnormalities compared to the normal wild-type translation initiation factor cofactor 28 DNA sequence. Mutations can be detected using existing techniques such as Southern blotting, DNA sequence analysis, PCR, and in situ hybridization. In addition, mutations may affect the expression of proteins. Therefore, Nor thern blotting and Western blotting can be used to indirectly determine whether a gene is mutated.

本发明的序列对染色体鉴定也是有价值的。 该序列会特异性地针对某条 人染色体具体位置且并可以与其杂交。 目前, 需要鉴定染色体上的各基因的具 体位点。 现在, 只有很少的基于实际序列数据(重复多态性)的染色体标记物可 用于标记染色体位置。 根据本发明, 为了将这些序列与疾病相关基因相关联, 其重要的第一步就是将这些 D 序列定位于染色体上。  The sequences of the invention are also valuable for chromosome identification. This sequence will specifically target a specific position on a human chromosome and can hybridize to it. Currently, the specific loci of each gene on the chromosome need to be identified. Currently, only a few chromosome markers based on actual sequence data (repeating polymorphisms) can be used to mark chromosome locations. According to the present invention, in order to associate these sequences with disease-related genes, an important first step is to locate these D sequences on a chromosome.

简而言之, 根据 cDNA制备 PCR引物(优选 15-35bp) , 可以将序列定位于染 色体上。 然后, 将这些引物用于 PCR筛选含各条人染色体的体细胞杂合细胞。 只有那些含有相应于引物的人基因的杂合细胞会产生扩增的片段。  In short, PCR primers (preferably 15-35bp) are prepared based on cDNA, and the sequences can be located on chromosomes. These primers were then used for PCR screening of somatic hybrid cells containing individual human chromosomes. Only those hybrid cells that contain the human gene corresponding to the primer will produce amplified fragments.

体细胞杂合细胞的 PCR定位法, 是将 DNA定位到具体染色体的快捷方法。 使用本发明的寡核苷酸引物, 通过类似方法, 可利用一组来自特定染色体的片 段或大量基因组克隆而实现亚定位。 可用于染色体定位的其它类似策略包括原 位杂交、 用标记的流式分选的染色体预筛选和杂交预选, 从而构建染色体特异 的 cDNA库。  PCR localization of somatic hybrid cells is a quick way to localize DNA to specific chromosomes. Using the oligonucleotide primers of the present invention, by a similar method, a set of fragments from a specific chromosome or a large number of genomic clones can be used to achieve sublocalization. Other similar strategies that can be used for chromosomal localization include in situ hybridization, chromosome pre-screening with labeled flow sorting, and hybrid pre-selection to construct chromosome-specific cDNA libraries.

将 cDNA克隆与中期染色体进行荧光原位杂交(FISH), 可以在一个步骤中 精确地进行染色体定位。 此技术的综述, 参见 Verma等, Human Chromosomes: A Manua l of Bas ic Techniques, Pergamon Press, New York (1988)。  Fluorescent in situ hybridization (FISH) of cDNA clones to metaphase chromosomes allows precise chromosomal localization in one step. For a review of this technique, see Verma et al., Human Chromosomes: A Manua l of Basic Techniques, Pergamon Press, New York (1988).

一旦序列被定位到准确的染色体位置, 此序列在染色体上的物理位置就 可以与基因图数据相关联。 这些数据可见于例如, V. Mckus ick, Mende l ian Inher i tance in Man (可通过与 Johns Hopkins Univers i ty Welch Medica l Library联机获得)。 然后可通过连锁分析, 确定基因与业已定位到染色体区域 上的疾病之间的关系。 接着, 需要测定患病和未患病个体间的 cDNA或基因组序列差异。 如果在 一些或所有的患病个体中观察到某突变, 而该突变在任何正常个体中未观察 到, 则该突变可能是疾病的病因。 比较患病和未患病个体, 通常涉及首先寻找 染色体中结构的变化, 如从染色体水平可见的或用基于 cDNA序列的 PCR可检测 的缺失或易位。 根据目前的物理作图和基因定位技术的分辨能力, 被精确定位 至与疾病有关的染色体区域的 cDNA , 可以是 50至 500个潜在致病基因间之一种 (假定 1兆碱基作图分辨能力和每 20kb对应于一个基因)。 Once the sequence is located at the exact chromosomal location, the physical location of the sequence on the chromosome can be correlated with the genetic map data. These data can be found in, for example, V. Mckusick, Mendelian Inherance in Man (available online with Johns Hopkins University Welch Medical Library). Linkage analysis can then be used to determine the relationship between genes and diseases that have been mapped to chromosomal regions. Next, the differences in cDNA or genomic sequences between the affected and unaffected individuals need to be determined. If a mutation is observed in some or all diseased individuals and the mutation is not observed in any normal individuals, the mutation may be the cause of the disease. Comparing affected and unaffected individuals usually involves first looking for structural changes in the chromosome, such as deletions or translocations that are visible at the chromosomal level or detectable using cDNA sequence-based PCR. According to the resolution capabilities of current physical mapping and gene mapping technology, the cDNA accurately mapped to the disease-related chromosomal region can be one of 50 to 500 potentially pathogenic genes (assuming 1 megabase mapping resolution) Capacity and each 20kb corresponds to a gene).

可以将本发明的多肽、 多核苷酸及其模拟物、 激动剂、 拮抗剂和抑制剂与 合适的药物载体组合后使用。 这些载体可以是水、 葡萄糖、 乙醇、 盐类、 缓冲 液、 甘油以及它们的组合。 组合物包含安全有效量的多肽或拮抗剂以及不影响 药物效果的载体和赋形剂。 这些组合物可以作为药物用于疾病治疗。  The polypeptides, polynucleotides and mimetics, agonists, antagonists and inhibitors of the present invention can be used in combination with a suitable pharmaceutical carrier. These carriers can be water, glucose, ethanol, salts, buffers, glycerol, and combinations thereof. The composition comprises a safe and effective amount of the polypeptide or antagonist, and carriers and excipients which do not affect the effect of the drug. These compositions can be used as drugs for the treatment of diseases.

本发明还提供含有一种或多种容器的药盒或试剂盒, 容器中装有一种或多 种本发明的药用组合物成分。 与这些容器一起, 可以有由制造、 使用或销售药 品或生物制品的政府管理机构所给出的指示性提示, 该提示反映出生产、 使用 或销售的政府管理机构许可其在人体上施用。 此外, 本发明的多肽可以与其它 的治疗化合物结合使用。  The invention also provides a kit or kit containing one or more containers containing one or more ingredients of the pharmaceutical composition of the invention. Along with these containers, there may be instructional instructions given by government agencies that manufacture, use, or sell pharmaceuticals or biological products, which prompts permission for administration on the human body by government agencies that produce, use, or sell. In addition, the polypeptides of the invention can be used in combination with other therapeutic compounds.

药物组合物可以以方便的方式给药, 如通过局部、 静脉内、 腹膜内、 肌内、 皮下、 鼻内或皮内的给药途径。 翻译起始因子辅助因子 28 以有效地治疗和 /或 预防具体的适应症的量来给药。 施用于患者的翻译起始因子辅助因子 28 的量 和剂量范围将取决于许多因素, 如给药方式、 待治疗者的健康条件和诊断医生 的判断。  The pharmaceutical composition can be administered in a convenient manner, such as by a topical, intravenous, intraperitoneal, intramuscular, subcutaneous, intranasal or intradermal route of administration. The translation initiation factor cofactor 28 is administered in an amount effective to treat and / or prevent a specific indication. The amount and dose range of translation initiation factor cofactor 28 administered to a patient will depend on many factors, such as the mode of administration, the health conditions of the person to be treated, and the judgment of the diagnostician.

实施例 Examples

下面结合具体实施例, 进一步阐述本发明。 应理解, 这些实施例仅用于说 明本发明而不用于限制本发明的范围。 下列实施例中未注明具体条件的实验方 法, 通常按照常规条件如 Sambrook等人, 分子克隆: 实验室手册(New York: Co l d Spr ing Harbor Labora tory Pres s , 1989)中所述的条件, 或按照制造厂 商所建议的条件。  The present invention is further described below with reference to specific embodiments. It should be understood that these examples are only used to illustrate the present invention and not to limit the scope of the present invention. The experimental methods without specific conditions in the following examples are generally in accordance with conventional conditions such as those described in Sambrook et al., Molecular Cloning: Laboratory Manual (New York: Cold Harbor Labora tory Pres s, 1989), Or as recommended by the manufacturer.

实施例 1 翻译起始因子辅助因子 28的克隆  Example 1 Cloning of translation initiation factor cofactor 28

用异硫氰酸胍 /酚 /氯仿一步法提取人胎脑总 RNA。 用 Quik mRNA I solat ion Ki t O 01/31 Total human fetal brain RNA was extracted by one-step method with guanidine isothiocyanate / phenol / chloroform. Quik mRNA I solat ion Ki t O 01/31

( Qiegene 公司产品) 从总 RNA中分离 poly (A) mRNA. 2ug poly (A) mRNA经逆转录 形成 cDNA。用 Smar t cDNA克隆试剂盒(购自 Clontech ) cDM片段定向插入到 pBSK (+) 载体 (Clontech公司产品)的多克隆位点上, 转化 DH5 a , 细菌形成 cDNA文库。 用 Dye terminate cycle react ion sequenc ing ki t (Perkin-Elmer公司产品) 和 ABI 377 自动测序仪(Perkin-Elmer公司)测定所有克隆的 5'和 3'末端的序列。将测定的 cDNA 序列与已有的公共 D 序列数据库 (Genebank )进行比较, 结果发现其中一个克隆 0581G05的 cDNA序列为新的 DNA。 通过合成一系列引物对该克隆所含的插入 cDNA片 段进行双向测定。结果表明, 0581G05克隆所含的全长 cDNA为 2951bp (如 Seq ID N0: l 所示) , 从第 878bp至 1636bp有一个 759bp的开放阅读框架 ( 0RF ) , 编码一个新的 蛋白质 (如 Seq ID NO: 2所示) 。 我们将此克隆命名为 pBS_0581G05, 编码的蛋白 质命名为翻译起始因子辅助因子 28。 实施例 2 cDNA 克隆的同源检索  (Qiegene product) Isolate poly (A) mRNA from total RNA. 2ug poly (A) mRNA is reverse transcribed to form cDNA. The SDM t cDNA cloning kit (purchased from Clontech) was used to insert the cDM fragment into the multiple cloning site of pBSK (+) vector (Clontech) to transform DH5 a. The bacteria formed a cDNA library. The sequences at the 5 'and 3' ends of all clones were determined using Dye terminate cycle react ion sequencing kit (Perkin-Elmer) and ABI 377 automatic sequencer (Perkin-Elmer). The determined cDNA sequence was compared with the existing public D-sequence database (Genebank), and it was found that the cDNA sequence of one of the clones 0581G05 was new DNA. The inserted cDNA fragments contained in this clone were determined in both directions by synthesizing a series of primers. The results showed that the 0581G05 clone contained a full-length cDNA of 2951bp (as shown in Seq ID NO: l), and a 759bp open reading frame (0RF) from 878bp to 1636bp, encoding a new protein (such as Seq ID NO : Shown in 2). We named this clone pBS_0581G05, and the encoded protein was named translation initiation factor cofactor 28. Example 2 Homologous search of cDNA clones

将本发明的翻译起始因子辅助因子 28的序列及其编码的蛋白序列, 用 Blas t程 序 (Bas ic local al ignment search tool) [Al tschul, SF et al. J. Mol. Biol. 1990; 215: 403-10] , 在 Genbank、 Swi ssport等数据库进行同源检索. 与本发明的翻译起始因子辅助因子 28同源性最高的基因是一种已知的家兔的转录 起始因子 elF2C, 其编码的蛋白在 Genbank的准入号为 AF005355。 蛋白质同源结果 示于图 1, 两者高度同源, 其相同性为 80%; 相似性为 87%。 实施例 3 用 RT-PCR方法克隆编码翻译起始因子辅助因子 28的基因  Using the Blas t program (Basic local al ignment search tool) of the sequence of the translation initiation factor cofactor 28 of the present invention and its encoded protein sequence [Al tschul, SF et al. J. Mol. Biol. 1990; 215 : 403-10], perform homology search in databases such as Genbank, Swissport, etc. The gene with the highest homology to the translation initiation factor cofactor 28 of the present invention is a known transcription initiation factor elF2C of rabbits, The accession number of the encoded protein in Genbank is AF005355. The protein homology results are shown in Figure 1. The two are highly homologous, with 80% identity; 87% similarity. Example 3 Cloning of a gene encoding translation initiation factor cofactor 28 by RT-PCR

用胎脑细胞总 RNA为模板,以 ol igo-dT为引物进行逆转录反应合成 cDNA,用 Qiagene的试剂盒纯化后,用下列引物进行 PCR扩增:  CDNA was synthesized using fetal brain total RNA as a template and ol igo-dT as a primer for reverse transcription reaction. After purification with Qiagene's kit, the following primers were used for PCR amplification:

Pr imerl: 5'- GATCAAAGCTACAGCAAGATCTGC-3' (SEQ ID NO: 3)  Pr imerl: 5'- GATCAAAGCTACAGCAAGATCTGC-3 '(SEQ ID NO: 3)

Primer 2: 5'- CACAGTTTTAGTTTAATAAAAGG -3' (SEQ ID NO: 4)  Primer 2: 5'- CACAGTTTTAGTTTAATAAAAGG -3 '(SEQ ID NO: 4)

Priraerl为位于 SEQ ID NO: 1的 5,端的第 lbp开始的正向序列;  Priraerl is a forward sequence starting at the lbp of the 5th end of SEQ ID NO: 1;

Primer2为 SEQ ID NO: 1的中的 3'端反向序列,  Primer2 is the 3 'reverse sequence in SEQ ID NO: 1,

扩增反应的条件: 在 50 μ 1的反应体积中含有 50mmol/L KC1, 10mmol/L Tri s- Cl, (pH8. 5) , 1. 5mmol/L MgCl2, 200 μ mol/L dNTP, lOpmol引物, 1U的 Taq DNA聚合 P CN00/ 酶(Clontech公司产品)。 在 PE9600型 DNA热循环仪(Perkin-Elmer公司)上按下列条 件反应 25个周期: 94。C 30sec; 55°C 30sec; 72°C 2min。 在 RT-PCR时同时设 β - actin 为阳性对照和模板空白为阴性对照。 扩增产物用 QIAGEN公司的试剂盒纯化, 用 TA 克隆试剂盒连接到 PCR载体上 (Invitrogen公司产品) 。 DNA序列分析结果表明 PCR 产物的 DNA序列与 SEQ ID NO: 1所示的 l-2951bp完全相同。 实施例 4 Northern 印迹法分析翻译起始因子辅助因子 28基因的表达 用一步法提取总 RM nal. Biochem 1987, 162, 156-159]。 该法包括酸性硫 氰酸胍苯酚 -氯仿抽提。 即用 4M异硫氰酸胍 -25mM柠檬酸钠, 0.2M乙酸纳 ( pH4.0 ) 对组织进行匀浆, 加入 1倍体积的苯酚和 1/5体积的氯仿-异戊醇 (49: 1 ) , 混合 后离心。 吸出水相层, 加入异丙醇 (0.8体积) 并将混合物离心得到 RNA沉淀。 将 得到的 RM沉淀用 70%乙醇洗涤, 干燥并溶于水中。 用 20 g RNA, 在含 20mM 3- (N - 吗啉代) 丙磺酸(PH7.0) -5mM乙酸纳 -ImM EDTA-2.2M甲醛的 1.2%琼脂糖凝胶上进 行电泳。 然后转移至硝酸纤维素膜上。 用 a-32P dATP通过随机引物法制备 32Ρ-标记 的 DNA探针。 所用的 DNA探针为图 1所示的 PCR扩增的翻译起始因子辅助因子 28编码 区序列(878bp至 1636bp)。 将 32P-标记的探针 (约 2 χ 106cpm/ml ) 与转移了 RNA的硝 酸纤维素膜在一溶液中于 42°C杂交过夜, 该溶液包含 50%甲酰胺 -25ra KH2P04 (pH7.4 ) -5 χSSC-5 χ DenhaΓdt,s溶液和200 μg/ml鮭精DNA。 杂交之后, 将滤膜 在 1 xSSC-0.1%SDS中于 55。C洗 30min。 然后, 用 Phosphor Imager进行分析和定量。 实施例 5 重组翻译起始因子辅助因子 28的体外表达、 分离和纯化 Amplification conditions: 50 mmol / L KC1, 10 mmol / L Tri s-Cl, (pH 8.5.5), 1.5 mmol / L MgCl 2 , 200 μ mol / L dNTP, lOpmol in a reaction volume of 50 μ 1 Primer, 1U Taq DNA Polymerization P CN00 / enzyme (Clontech). The reaction was performed on a PE9600 DNA thermal cycler (Perkin-Elmer) for 25 cycles under the following conditions: 94. C 30sec; 55 ° C 30sec; 72 ° C 2min. During RT-PCR, β-actin was set as a positive control and template blank was set as a negative control. The amplified product was purified using a QIAGEN kit and ligated to a PCR vector (Invitrogen product) using a TA cloning kit. The DNA sequence analysis results showed that the DNA sequence of the PCR product was exactly the same as the l-2951bp shown in SEQ ID NO: 1. Example 4 Northern blot analysis of the expression of the translation initiation factor cofactor 28 gene The total RM nal was extracted by a one-step method. Biochem 1987, 162, 156-159]. This method involves acid guanidinium thiocyanate phenol-chloroform extraction. That is, the tissue is homogenized with 4M guanidine isothiocyanate-25mM sodium citrate, 0.2M sodium acetate (pH4.0), and 1 volume of phenol and 1/5 volume of chloroform-isoamyl alcohol (49: 1 ) And centrifuge after mixing. Aspirate the aqueous layer, add isopropanol (0.8 vol) and centrifuge the mixture to obtain RNA precipitate. The obtained RM precipitate was washed with 70% ethanol, dried and dissolved in water. Using 20 g of RNA, electrophoresis was performed on a 1.2% agarose gel containing 20 mM 3- (N-morpholino) propanesulfonic acid (PH7.0)-5 mM sodium acetate-ImM EDTA-2.2M formaldehyde. It was then transferred to a nitrocellulose membrane. Preparation 32 Ρ- DNA probe labeled with a- 32 P dATP by random priming method. The DNA probe used was the PCR-amplified translation initiation factor cofactor 28 coding region sequence (878bp to 1636bp) shown in FIG. 32 P-labeled probes (about 2 x 10 6 cpm / ml) were hybridized with a nitrocellulose membrane to which RNA was transferred at 42 ° C overnight in a solution containing 50% formamide-25ra KH 2 P0 4 (pH7.4) -5 χSSC-5 χDenha dt, s solution and 200 μg / ml salmon sperm DNA. After hybridization, the filters were placed in 1 x SSC-0.1% SDS at 55. C for 30 min. Then, Phosphor Imager was used for analysis and quantification. Example 5 In vitro expression, isolation and purification of recombinant translation initiation factor cofactor 28

根据 SEQ ID NO: 1和图 1所示的编码区序列, 设计出一对特异性扩增引物, 序 列如下:  Based on SEQ ID NO: 1 and the coding region sequence shown in Figure 1, a pair of specific amplification primers were designed, the sequence is as follows:

Primer3: 5'- CCCCATATGATGGATGGCCACCCCAGCCGGTAC-3' ( Seq ID No: 5 ) Primer4: 5'- CCCAAGCTTTCACCGAAAATACATCGTGTGCTG-3' (Seq ID No: 6 ) 此两段引物的 5'端分别含有 Ndel和 Hindlll酶切位点, 其后分别为目的基因 5' 端和 3'端的编码序列, Ndel和 Hindlll酶切位点相应于表达载体质粒 pET- 28b(+) (Novagen公司产品, Cat. No.69865.3)上的选择性内切酶位点。 以含有全长 目的基因的 PBS-0581G05质粒为模板, 进行 PCR反应。 PCR反应条件为: 总体积 50μ 1 中含 pBS-0581G05质粒 10pg、 引物 Pr imer-3和 Pr imer-4分别为 l Opmol、 Advantage polymerase Mix ( Clontech公司产品) 1 μ 1。 循环参数: 94°C 20s, 60。C 30s, 68°C 2 min,共 25个循环。 用 Ndel和 H indl l l分别对扩增产物和质粒 pET-28 (+)进行双酶 切,分别回收大片段,并用 T4连接酶连接。 连接产物转化用氯化钙法大肠杆细菌 DH5 α ,在含卡那霉素 (终浓度 30 g/ml ) 的 LB平板培养过夜后, 用菌落 PCR方法筛选 阳性克隆, 并进行测序。 挑选序列正确的阳性克隆(PET-0581G05 )用氯化钙法将 重组质粒转化大肠杆菌 BL21 (DE3) plySs (Novagen公司产品)。 在含卡那霉素 (终浓 度 30 g/ml ) 的 LB液体培养基中, 宿主菌 BL21 ( pET-0581G05 )在 37°C培养至对数 生长期, 加入 IPTG至终浓度 1隱 ol/L, 继续培养 5小时。 离心收集菌体, 经超声波 破菌,离心收集上清液, 用能与6个组氨酸(6^ 3-了& )结合的亲和层析柱^ 5. 8^(1 Quick Cartr idge ( Novagen公司产品) 进行层析, 得到了纯化的目的蛋白翻译起 始因子辅助因子 28。 经 SDS- PAGE电泳, 在 28kDa处得到一单一的条带 (图 2 ) 。 将 该条带转移至 PVDF膜上用 Edams水解法进行 N-端氨基酸序列分析, 结果 N-端 15个氨 基酸与 SEQ ID NO: 2所示的 N-端 15个氨基酸残基完全相同。 实施例 6 抗翻译起始因子辅助因子 28抗体的产生 Primer3: 5'- CCCCATATGATGGATGGCCACCCCAGCCGGTAC-3 '(Seq ID No: 5) Primer4: 5'- CCCAAGCTTTCACCGAAAATACATCGTGTGCTG-3' (Seq ID No: 6) The 5 'ends of these two primers contain Ndel and Hindlll restriction sites, respectively. The coding sequences of the 5 'and 3' ends of the gene of interest are followed, respectively. The Ndel and Hindlll restriction sites correspond to the selectivity within the expression vector plasmid pET-28b (+) (Novagen, Cat. No. 69865.3). Digestion site. The PCR reaction was performed using the PBS-0581G05 plasmid containing the full-length target gene as a template. PCR reaction conditions are: total volume 50 μ 1 The pBS-0581G05 plasmid contained 10 pg, and the primers Primer-3 and Primer-4 were l Opmol and Advantage polymerase Mix (Clontech) 1 μ1, respectively. Cycle parameters: 94 ° C 20s, 60. C 30s, 68 ° C 2 min, 25 cycles in total. Ndel and Hindl11 were used to double-digest the amplified product and plasmid pET-28 (+), respectively, and large fragments were recovered and ligated with T4 ligase. The ligated product was transformed into E. coli DH5α using the calcium chloride method. After being cultured overnight on LB plates containing kanamycin (final concentration 30 g / ml), positive colonies were screened by colony PCR and sequenced. A positive clone (PET-0581G05) with the correct sequence was selected, and the recombinant plasmid was transformed into E. coli BL21 (DE3) plySs (product of Novagen) using the calcium chloride method. In LB liquid medium containing kanamycin (final concentration 30 g / ml), the host bacteria BL21 (pET-0581G05) was cultured at 37 ° C to the logarithmic growth phase, and IPTG was added to a final concentration of 1 ol / L. Continue to cultivate for 5 hours. The bacteria were collected by centrifugation, and the supernatant was collected by centrifugation, and the supernatant was collected by centrifugation. An affinity chromatography column capable of binding to 6 histidines (6 ^ 3- 了 &) was used. 5. 8 ^ (1 Quick Cartr idge ( Novagen product) was chromatographed to obtain the purified target protein translation initiation factor cofactor 28. After SDS-PAGE electrophoresis, a single band was obtained at 28 kDa (Figure 2). The band was transferred to a PVDF membrane The N-terminal amino acid sequence was analyzed by the Edams hydrolysis method, and the results showed that the 15 amino acids at the N-terminus were completely the same as the 15 amino acid residues at the N-terminus shown in SEQ ID NO: 2. Example 6 Anti-translation initiation factor cofactor 28 antibody production

用多肽合成仪(PE公司产品)合成下述翻译起始因子辅助因子 28特异性的多肽: NH2-Met-Asp-Gly-Hi s-Pro-Ser-Arg-Tyr-Cys-Ala-Thr-Va l-Arg-Va l-Gln-COOH (SEQ ID NO: 7)。 将该多肽分别与血蓝蛋白和牛血清白蛋白耦合形成复合, 方法参 见: Avrameas, et a l. Immunochemi s try, 1969; 6: 43。 用 4mg上述血蓝蛋白多肽复 合物加上完全弗氏佐剂免疫家兔, 15天后再用血蓝蛋白多肽复合物加不完全弗氏 佐剂加强免疫一次。 釆用经 15 g/ml牛血清白蛋白多肽复合物包被的滴定板做 ELISA测定兔血清中抗体的滴度。 用蛋白 A-Sepharose从抗体阳性的家兔血清中分 离总 IgG。 将多肽结合于溴化氰活化的 Sepharose4B柱上, 用亲和层析法从总 IgG中 分离抗多肽抗体。 免疫沉淀法证明纯化的抗体可特异性地与翻译起始因子辅助因 子 28结合。 Polypeptide synthesizer (product of PE company) was used to synthesize the following polypeptides specific for translation initiation factor cofactor 28: NH 2 -Met-Asp-Gly-Hi s-Pro-Ser-Arg-Tyr-Cys-Ala-Thr- Va l-Arg-Va l-Gln-COOH (SEQ ID NO: 7). The polypeptide is coupled to hemocyanin and bovine serum albumin to form a complex, respectively. For the method, see: Avrameas, et al. Immunochemi s try, 1969; 6: 43. Rabbits were immunized with 4 mg of the hemocyanin polypeptide complex plus complete Freund's adjuvant, and 15 days later, the hemocyanin polypeptide complex plus incomplete Freund's adjuvant was used to boost immunity once.釆 Using a 15 g / ml bovine serum albumin peptide complex-coated titer plate as an ELISA to determine antibody titers in rabbit serum. Total IgG was isolated from antibody-positive rabbit serum using protein A-Sepharose. The peptide was bound to a cyanogen bromide-activated Sepharose4B column, and anti-peptide antibodies were separated from the total IgG by affinity chromatography. The immunoprecipitation method proved that the purified antibody could specifically bind to translation initiation factor cofactor 28.

Claims

权利要求 Rights request 1、 一种分离的多肽-翻译起始因子辅助因子 28, 其特征在于它包含有: SEQ ID NO: 2所示的氨基酸序列的多肽、 或其多肽的活性片段、 类似物或衍生物。 1. An isolated polypeptide-translation initiation factor cofactor 28, characterized in that it comprises: a polypeptide having the amino acid sequence shown in SEQ ID NO: 2, or an active fragment, analog, or derivative thereof. 2、 如权利要求 1 所述的多肽, 其特征在于所述多肽、 类似物或衍生物的 氨基酸序列具有与 SEQ I D NO: 2所示的氨基酸序列至少 95%的相同性。  2. The polypeptide according to claim 1, characterized in that the amino acid sequence of the polypeptide, analog or derivative has at least 95% identity with the amino acid sequence shown in SEQ ID NO: 2. 3、 如权利要求 2所述的多肽, 其特征在于它包含具有 SEQ I D NO: 2 所示 的氨基酸序列的多肽。  3. The polypeptide according to claim 2, characterized in that it comprises a polypeptide having the amino acid sequence shown in SEQ ID NO: 2. 4、 一种分离的多核苷酸, 其特征在于所述多核苷酸包含选自下组中的一种: 4. An isolated polynucleotide, characterized in that said polynucleotide comprises one selected from the group consisting of: (a) 编码具有 SEQ I D NO: 2所示氨基酸序列的多肽或其片段、 类似物、 衍 生物的多核苷酸; (a) a polynucleotide encoding a polypeptide having an amino acid sequence shown in SEQ ID NO: 2 or a fragment, analog, or derivative thereof; (b) 与多核苷酸 (a ) 互补的多核苷酸; 或  (b) a polynucleotide complementary to polynucleotide (a); or (c) 与 (a ) 或 (b ) 有至少 80%相同性的多核苷酸。  (c) A polynucleotide that is at least 80% identical to (a) or (b). 5、 如权利要求 4 所述的多核苷酸, 其特征在于所述多核苷酸包含编码具 有 SEQ I D NO: 2所示氨基酸序列的多核苷酸。  5. The polynucleotide according to claim 4, wherein the polynucleotide comprises a polynucleotide encoding an amino acid sequence represented by SEQ ID NO: 2. 6、 如权利要求 4 所述的多核苷酸, 其特征在于所述多核苷酸的序列包含 有 SEQ ID NO: 1中 878-1636位的序列或 SEQ ID NO: 1 中 1-2951位的序列。  6. The polynucleotide according to claim 4, characterized in that the sequence of the polynucleotide comprises the sequence of positions 878-1636 in SEQ ID NO: 1 or the sequence of positions 1-2951 in SEQ ID NO: 1 . 7、 一种含有外源多核苷酸的重组载体, 其特征在于它是由权利要求 4-6 中的任一权利要求所述多核苷酸与质粒、 病毒或运载体表达载体构建而成的重 组载体。  7. A recombination vector containing an exogenous polynucleotide, characterized in that it is a recombination constructed by the polynucleotide according to any one of claims 4-6 and a plasmid, virus or a carrier expression vector Carrier. 8、 一种含有外源多核苷酸的遗传工程化宿主细胞, 其特征在于它是选自 于下列一种宿主细胞:  8. A genetically engineered host cell containing an exogenous polynucleotide, characterized in that it is selected from one of the following host cells: (a) 用权利要求 7所述的重组载体转化或转导的宿主细胞; 或  (a) a host cell transformed or transduced with the recombinant vector of claim 7; or (b) 用权利要求 4-6中的任一权利要求所述多核苷酸转化或转导的宿主细胞。 (b) a host cell transformed or transduced with a polynucleotide according to any one of claims 4-6. 9、 一种具有翻译起始因子辅助因子 28活性的多肽的制备方法, 其特征在 于所述方法包括: 9. A method for preparing a polypeptide having translation initiation factor cofactor 28 activity, characterized in that the method includes: (a) 在表达翻译起始因子辅助因子 28 条件下, 培养权利要求 8 所述的工 程化宿主细胞;  (a) culturing the engineered host cell according to claim 8 under the condition of expressing a translation initiation factor cofactor 28; (b) 从培养物中分离出具有翻译起始因子辅助因子 28活性的多肽。 (b) isolating a polypeptide having translation initiation factor cofactor 28 activity from the culture. 1 0、 一种能与多肽结合的抗体,其特征在于所述抗体是能与翻译起始因子 辅助因子 28特异性结合的抗体。 10. An antibody capable of binding to a polypeptide, characterized in that said antibody is an antibody capable of specifically binding to a translation initiation factor cofactor 28. 11、 一类模拟或调节多肽活性或表达的化合物, 其特征在于它们是模拟、 促进、 拮抗或抑制翻译起始因子辅助因子 28的活性的化合物。  11. A class of compounds that mimic or regulate the activity or expression of a polypeptide, characterized in that they are compounds that mimic, promote, antagonize or inhibit the activity of the translation initiation factor cofactor 28. 12、 如权利要求 11 所述的化合物, 其特征在于它是 SEQ I D NO: 1 所示的 多核苷酸序列或其片段的反义序列。  12. The compound according to claim 11, characterized in that it is an antisense sequence of a polynucleotide sequence shown in SEQ ID D NO: 1 or a fragment thereof. 1 3、 一种权利要求 11 所述化合物的应用, 其特征在于所述化合物用于调 节翻译起始因子辅助因子 28在体内、 体外活性的方法。  1 3. A use of the compound according to claim 11, characterized in that the compound is used for a method for regulating the activity of translation initiation factor cofactor 28 in vivo and in vitro. 14、 一种检测与权利要求 1-3中的任一权利要求所述多肽相关的疾病或疾 病易感性的方法, 其特征在于其包括检测所述多肽的表达量, 或者检测所述多 肽的活性, 或者检测多核苷酸中引起所述多肽表达量或活性异常的核苷酸变异。  14. A method for detecting a disease or susceptibility to a disease associated with a polypeptide according to any one of claims 1-3, characterized in that it comprises detecting the expression level of the polypeptide, or detecting the activity of the polypeptide Or detecting a nucleotide variation in a polynucleotide that causes abnormal expression or activity of the polypeptide. 15、 如权利要求 1-3中的任一权利要求所述多肽的应用, 其特征在于它应 用于筛选翻译起始因子辅助因子 28 的模拟物、 激动剂, 拮抗剂或抑制剂; 或 者用于肽指紋图谱鉴定。  15. Use of the polypeptide according to any one of claims 1-3, characterized in that it is used for screening mimetics, agonists, antagonists or inhibitors of the translation initiation factor cofactor 28; or Identification of peptide fingerprints. 16、 如权利要求 4- 6 中的任一权利要求所述的核酸分子的应用, 其特征在 于它作为引物用于核酸扩增反应, 或者作为探针用于杂交反应, 或者用于制造 基因芯片或微阵列。  16. The use of a nucleic acid molecule according to any one of claims 4 to 6, characterized in that it is used as a primer for a nucleic acid amplification reaction, or as a probe for a hybridization reaction, or for manufacturing a gene chip Or microarray. 17、 如权利要求 1-6及 11 中的任一权利要求所述的多肽、 多核苷酸或化 合物的应用, 其特征在于用所述多肽、 多核苷酸或其模拟物、 激动剂、 拮抗剂 或抑制剂以安全有效剂量与药学上可接受的载体组成作为诊断或治疗与翻译起 始因子辅助因子 28异常相关的疾病的药物组合物。  17. Use of a polypeptide, polynucleotide or compound according to any one of claims 1-6 and 11, characterized in that the polypeptide, polynucleotide or mimetic, agonist, antagonist is used Or the inhibitor is composed of a safe and effective dose with a pharmaceutically acceptable carrier as a pharmaceutical composition for diagnosing or treating a disease associated with abnormality of translation initiation factor cofactor 28. 18、 权利要求 1-6及 1 1 中的任一权利要求所述的多肽、 多核苷酸或化合 物的应用, 其特征在于用所述多肽、 多核苷酸或化合物制备用于治疗如恶性肿 瘤, 血液病, HIV感染和免疫性疾病和各类炎症的药物。  18. Use of a polypeptide, polynucleotide or compound according to any one of claims 1 to 6 and 1 1, characterized in that the polypeptide, polynucleotide or compound is used for preparing a treatment such as a malignant tumor, Hematological diseases, HIV infection and immune diseases and drugs of various inflammations.
PCT/CN2000/000382 1999-10-28 2000-10-27 A novel polypeptide, a translation initiation factor helper factor 28 and the polynucleotide encoding the polypeptide Ceased WO2001031001A1 (en)

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CN117877580A (en) * 2023-12-29 2024-04-12 深药科技(苏州)有限公司 Polypeptide key site prediction method, equipment and medium based on depth language model

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DATABASE GENBANK [online] 25 June 1998 (1998-06-25), Database accession no. AC005355 *
DATABASE GENBANK [online] 30 October 1998 (1998-10-30), Database accession no. AC002036 *
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GENOMICS, vol. 60, no. 3, 15 September 1999 (1999-09-15), pages 295 - 308 *
GENOMICS, vol. 61, no. 2, 15 October 1999 (1999-10-15), pages 210 - 218 *

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* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN117877580A (en) * 2023-12-29 2024-04-12 深药科技(苏州)有限公司 Polypeptide key site prediction method, equipment and medium based on depth language model

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