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WO2001001294A3 - Biological data processing - Google Patents

Biological data processing Download PDF

Info

Publication number
WO2001001294A3
WO2001001294A3 PCT/IB2000/000863 IB0000863W WO0101294A3 WO 2001001294 A3 WO2001001294 A3 WO 2001001294A3 IB 0000863 W IB0000863 W IB 0000863W WO 0101294 A3 WO0101294 A3 WO 0101294A3
Authority
WO
WIPO (PCT)
Prior art keywords
data processing
biological data
queries
server
translates
Prior art date
Application number
PCT/IB2000/000863
Other languages
French (fr)
Other versions
WO2001001294A2 (en
WO2001001294A8 (en
Inventor
Thodoros Topaloglou
Original Assignee
Gene Logic Inc
Thodoros Topaloglou
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Gene Logic Inc, Thodoros Topaloglou filed Critical Gene Logic Inc
Priority to CA002377823A priority Critical patent/CA2377823A1/en
Priority to EP00938960A priority patent/EP1228447A2/en
Priority to US10/018,461 priority patent/US6931396B1/en
Priority to AU54179/00A priority patent/AU774973B2/en
Publication of WO2001001294A2 publication Critical patent/WO2001001294A2/en
Publication of WO2001001294A8 publication Critical patent/WO2001001294A8/en
Publication of WO2001001294A3 publication Critical patent/WO2001001294A3/en

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/20—Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
    • G06F16/24—Querying
    • G06F16/245—Query processing
    • G06F16/2458—Special types of queries, e.g. statistical queries, fuzzy queries or distributed queries
    • G06F16/2471—Distributed queries
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/20—Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
    • G06F16/24—Querying
    • G06F16/245—Query processing
    • G06F16/2452—Query translation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Databases & Information Systems (AREA)
  • Medical Informatics (AREA)
  • Bioethics (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Computational Linguistics (AREA)
  • Data Mining & Analysis (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Fuzzy Systems (AREA)
  • Mathematical Physics (AREA)
  • Probability & Statistics with Applications (AREA)
  • Software Systems (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)

Abstract

A multi-database query system which queries a plurality of databases and servers, including an input which receives queries in a structured form and a translation server which translates at least a part of a received query into commands recognized by a data manipulation server.
PCT/IB2000/000863 1999-06-29 2000-06-28 Biological data processing WO2001001294A2 (en)

Priority Applications (4)

Application Number Priority Date Filing Date Title
CA002377823A CA2377823A1 (en) 1999-06-29 2000-06-28 Biological data processing
EP00938960A EP1228447A2 (en) 1999-06-29 2000-06-28 Biological data processing
US10/018,461 US6931396B1 (en) 1999-06-29 2000-06-28 Biological data processing
AU54179/00A AU774973B2 (en) 1999-06-29 2000-06-28 Biological data processing

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US14142499P 1999-06-29 1999-06-29
US60/141,424 1999-06-29

Publications (3)

Publication Number Publication Date
WO2001001294A2 WO2001001294A2 (en) 2001-01-04
WO2001001294A8 WO2001001294A8 (en) 2001-05-17
WO2001001294A3 true WO2001001294A3 (en) 2002-05-23

Family

ID=22495630

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/IB2000/000863 WO2001001294A2 (en) 1999-06-29 2000-06-28 Biological data processing

Country Status (4)

Country Link
EP (1) EP1228447A2 (en)
AU (1) AU774973B2 (en)
CA (1) CA2377823A1 (en)
WO (1) WO2001001294A2 (en)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7921068B2 (en) 1998-05-01 2011-04-05 Health Discovery Corporation Data mining platform for knowledge discovery from heterogeneous data types and/or heterogeneous data sources

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7444308B2 (en) 2001-06-15 2008-10-28 Health Discovery Corporation Data mining platform for bioinformatics and other knowledge discovery
GB2377287B (en) 2001-07-06 2005-07-13 Livedevices Ltd Improvements relating to internet-connected devices
EP1349081A1 (en) * 2002-03-28 2003-10-01 LION Bioscience AG Method and apparatus for querying relational databases

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5495606A (en) * 1993-11-04 1996-02-27 International Business Machines Corporation System for parallel processing of complex read-only database queries using master and slave central processor complexes
US5835755A (en) * 1994-04-04 1998-11-10 At&T Global Information Solutions Company Multi-processor computer system for operating parallel client/server database processes
US5873083A (en) * 1995-10-20 1999-02-16 Ncr Corporation Method and apparatus for extending a relational database management system using a federated coordinator

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5495606A (en) * 1993-11-04 1996-02-27 International Business Machines Corporation System for parallel processing of complex read-only database queries using master and slave central processor complexes
US5835755A (en) * 1994-04-04 1998-11-10 At&T Global Information Solutions Company Multi-processor computer system for operating parallel client/server database processes
US5873083A (en) * 1995-10-20 1999-02-16 Ncr Corporation Method and apparatus for extending a relational database management system using a federated coordinator

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
MATSUDA H ET AL: "QUERYING MOLECULAR BIOLOGY DATABASES BY INTEGRATION USING MULTIAGENTS", IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS, INSTITUTE OF ELECTRONICS INFORMATION AND COMM. ENG. TOKYO, JP, vol. E82-D, no. 1, January 1999 (1999-01-01), pages 199 - 207, XP000831460, ISSN: 0916-8532 *

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7921068B2 (en) 1998-05-01 2011-04-05 Health Discovery Corporation Data mining platform for knowledge discovery from heterogeneous data types and/or heterogeneous data sources
US8126825B2 (en) 1998-05-01 2012-02-28 Health Discovery Corporation Method for visualizing feature ranking of a subset of features for classifying data using a learning machine

Also Published As

Publication number Publication date
EP1228447A2 (en) 2002-08-07
CA2377823A1 (en) 2001-01-04
WO2001001294A2 (en) 2001-01-04
AU774973B2 (en) 2004-07-15
WO2001001294A8 (en) 2001-05-17
AU5417900A (en) 2001-01-31

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