WO2001040297A1 - A novel polypeptide - human atp/gtp binding domain-containing transition nuclear protein 10 and a polynucleotide encoding the same - Google Patents
A novel polypeptide - human atp/gtp binding domain-containing transition nuclear protein 10 and a polynucleotide encoding the same Download PDFInfo
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- WO2001040297A1 WO2001040297A1 PCT/CN2000/000509 CN0000509W WO0140297A1 WO 2001040297 A1 WO2001040297 A1 WO 2001040297A1 CN 0000509 W CN0000509 W CN 0000509W WO 0140297 A1 WO0140297 A1 WO 0140297A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
- C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
Definitions
- the present invention belongs to the field of biotechnology. Specifically, the present invention describes a new polypeptide, a human nuclear transfer protein 10 containing an ATP / GTP binding domain, and a polynucleotide sequence encoding the polypeptide. The invention also relates to a preparation method and application of the polynucleotide and polypeptide. Background technique
- Sperm formation is a process in which a gamete is gradually differentiated and finally forms a mature sperm cell.
- the first stage of sperm formation is the beginning of sperm cell development, and this stage is related to changes in chromatin structure; the second stage is to form a complete, transcriptionally inactive non-nucleus through fusion and aggregation of chromatin Body structure.
- This fusion process involves the transformation of two proteins.
- the first transformation is a histidine transformation and replacement process mediated by many sperm cell-specific proteins, and these proteins are replaced by one or two prolines in the second transformation process.
- These sperm cell-specific proteins play an important regulatory role in the second stage of mature sperm formation.
- TP1, TP2, TP3, and TP4 People have long cloned TP1, TP2, TP3, and TP4 from rat and mouse. Among them, the study of TP1 and TP2 is more detailed. Subsequently, human and bovine TP 1 proteins similar to the mouse TP1 protein were cloned from humans and cattle. The bovine TP1 protein contains a cysteine residue, while the human TP1 protein is similar to the mouse TP1 and does not contain a cysteine residue. These proteins all play important regulatory roles in the spermatogenesis of these organisms.
- Nuclear transfer protein 1 is one of the sperm cell-specific proteins.
- the conversion protein consists of 54 amino acid residues, and its sequence is highly conserved in mammals. We found a 7 amino acid long signal fragment at the 28th to 34th amino acid positions. The amino acid sequence of this fragment is as follows: S-K-R-K-Y-R-K.
- This sequence fragment contains a tyrosine residue and four serine residues. These four sites are the sites of protein phosphorylation. Among them, the tyrosine site is responsible for chromatin during protein-MA interaction. Instability is required; and the phosphorylation of the serine site is also necessary for protein-DNA interactions, which may regulate the correct binding of the protein to specific sites in the DNA. The abnormal expression of this domain will directly lead to the abnormal function of the protein during spermatogenesis, which will cause various phases of reproductive system diseases.
- ATP or GTP binding motifs are ubiquitous domains in various ATP / GTP binding proteins. Some are connected to ATP Both GTP and GTP proteins more or less contain this conserved mot if sequence, which has a conserved characteristic sequence fragment: [AG]-X (4)-G- K- [ST] (where X is arbitrary Amino acid residues).
- the most conserved of these mot if is the gl yc i ne enriched region, which forms a flexible loop between the (3-line and the alpha helix. This curved loop is usually associated with a phosphate group on the nucleotide Group reaction, the mot if sequence is usually called "A" consensus sequence or P loop.
- This motif is usually responsible for binding with ATP and GTP in the organism, providing the energy required for the protein to perform biological functions and stabilizing the protein in the organism.
- the structure of the body assists the protein to complete its normal physiological function. Abnormal expression will directly lead to the abnormal expression and function of some proteins, which will cause developmental disorders of various tissues, tumors and cancers.
- the new human nuclear transfer protein 10 containing an ATP / GTP binding domain is similar to other nuclear transfer proteins. It also contains a conserved signal fragment consisting of 7 amino acid residues and contains an ATP / GTP binding domain. Therefore, this protein is a new type of human nuclear conversion protein containing ATP / GTP binding domain, and is similar to other nuclear conversion proteins, has similar biological functions, and is closely related to the occurrence of some reproductive system diseases in vivo.
- the human ATP / GTP binding domain-containing nuclear transfer protein 10 protein plays an important role in important functions of the body as described above, and it is believed that a large number of proteins are involved in these regulatory processes, more needs to be identified in the art Processes the human ATP / GTP binding domain-containing nuclear transfer protein 10 protein, and in particular the amino acid sequence of this protein is identified. Isolation of the ATP / GTP binding domain-containing nuclear conversion protein 10 protein encoding genes in newcomers also provides a basis for research to determine the role of this protein in health and disease states. This protein may form the basis for the development of diagnostic and / or therapeutic drugs for diseases, so isolating its coding DNA is important. Disclosure of invention
- Another object of the invention is to provide a polynucleotide encoding the polypeptide.
- Another object of the present invention is to provide a recombinant vector containing a polynucleotide encoding a human ATP / GTP binding domain-containing nuclear conversion protein 10.
- Another object of the present invention is to provide a genetically engineered host cell containing 10% nucleotides encoding a human ATP / GTP binding domain-containing nuclear conversion protein.
- Another object of the present invention is to provide mimetic compounds, antagonists, agonists, and inhibitors of the nuclear transfer protein 10 containing ATP / GTP binding domains of the polypeptide of the present invention.
- Another object of the present invention is to provide diagnosis and treatment of human ATP / GTP binding domain-containing nuclear converter protein 10 abnormal phase. Related diseases.
- the present invention relates to an isolated polypeptide, which is of human origin and comprises: a polypeptide having the amino acid sequence of SEQ ID No. 2, or a conservative variant, biologically active fragment or derivative thereof.
- the polypeptide is a polypeptide having the amino acid sequence of SEQ ID NO: 2.
- the invention also relates to an isolated polynucleotide comprising a nucleotide sequence or a variant thereof selected from the group consisting of:
- sequence of the polynucleotide is one selected from the group consisting of: (a) a sequence having positions 206-469 in SEQ ID NO: 1; and (b) a sequence having 1-577 in SEQ ID NO: 1 Sequence of bits.
- the invention further relates to a vector, in particular an expression vector, containing the polynucleotide of the invention; a host cell genetically engineered with the vector, including a transformed, transduced or transfected host cell; and a method comprising culturing said Host cell and method of preparing the polypeptide of the present invention by recovering the expression product.
- a vector in particular an expression vector, containing the polynucleotide of the invention
- a host cell genetically engineered with the vector including a transformed, transduced or transfected host cell
- a method comprising culturing said Host cell and method of preparing the polypeptide of the present invention by recovering the expression product.
- the invention also relates to an antibody capable of specifically binding to a polypeptide of the invention.
- the present invention also relates to a method for screening compounds that mimic, activate, antagonize or inhibit human ATP / GTP binding domain-containing nuclear transduction protein 10 protein activity, which comprises utilizing the polypeptide of the present invention.
- the invention also relates to compounds obtained by this method.
- the invention also relates to a method for in vitro detection of a disease or disease susceptibility related to abnormal expression of a nuclear conversion protein 10 protein containing human ATP / GTP binding domain, which comprises detecting the polypeptide or a polynucleotide encoding the same in a biological sample. A mutation in a sequence, or the amount or biological activity of a polypeptide of the invention in a biological sample is detected.
- the present invention also relates to a pharmaceutical composition
- a pharmaceutical composition comprising a polypeptide of the present invention or a mimetic thereof, an activator, an antagonist or an inhibitor, and a pharmaceutically acceptable carrier.
- the present invention also relates to the preparation of polypeptides and / or polynucleotides of the present invention for the treatment of some reproductive system diseases, developmental disorders of related tissues, tumors and cancers or other nuclear conversion proteins due to humans containing an ATP / GTP binding domain. 10 Use of a medicine for diseases caused by abnormal expression.
- Nucleic acid sequence refers to oligonucleotides, nucleotides or polynucleotides and fragments or parts thereof, and can also refer to genomic or synthetic Ww ⁇ or RNA, which can be single-stranded or double-stranded, representing the sense strand Or antisense strand.
- amino acid sequence refers to an oligopeptide, peptide, polypeptide or protein sequence and fragments or portions thereof.
- a protein or polynucleotide “variant” refers to an amino acid sequence having one or more amino acids or nucleotide changes or a polynucleotide sequence encoding it.
- the changes may include deletions, insertions or substitutions of amino acids or nucleotides in the amino acid sequence or nucleotide sequence, which may have "conservative" changes, wherein the substituted amino acid has a structural or chemical property similar to the original amino acid, Such as replacing leucine with leucine.
- Variants can also have non-conservative changes, such as replacing glycine with tryptophan.
- “Deletion” refers to the deletion of one or more amino acids or nucleotides in an amino acid sequence or nucleotide sequence.
- Insertion refers to an alteration in the amino acid sequence or nucleotide sequence that results in an increase in one or more amino acids or nucleotides compared to a naturally occurring molecule.
- Replacement refers to the replacement of one or more amino acids or nucleotides with different amino acids or nucleotides.
- Bioactivity refers to a protein that has the structure, regulation, or biochemical function of a natural molecule.
- immunological activity refers to the ability of natural, recombinant or synthetic proteins and fragments thereof to induce a specific immune response and to bind to specific antibodies in a suitable animal or cell.
- An "agonist” refers to a molecule that, when combined with a human ATP / GTP binding domain-containing nuclear conversion protein 10, can cause the protein to change, thereby regulating the activity of the protein.
- An agonist may include a protein, a nucleic acid, a carbohydrate, or any other molecule that binds to a human ATP / GTP binding domain-containing nuclear conversion protein 10.
- Antagonist refers to a nuclear conversion protein that can block or regulate human ATP / GTP binding domain-containing 1 when it binds to a human ATP / GTP binding domain-containing nuclear conversion protein.
- a biologically or immunologically active molecule may include proteins, nucleic acids, carbohydrates, or any other molecule that binds to a human ATP / GTP binding domain-containing nuclear conversion protein 10.
- Regular refers to a change in the function of a human ATP / GTP binding domain-containing nuclear conversion protein 10, including an increase or decrease in protein activity, a change in binding characteristics, and a human ATP / GTP binding domain-containing nuclear conversion protein. Any other biological, functional, or immunological changes.
- Substantially pure means substantially free of other proteins, lipids, sugars or other substances with which it is naturally associated.
- Those skilled in the art can purify human ATP / GTP binding domain-containing nuclear conversion proteins 10 using standard protein purification techniques.
- Substantially pure human ATP / GTP binding domain-containing nuclear transfer protein 10 produces a single main band on a non-reducing polyacrylamide gel.
- the purity of the human ATP / GTP binding domain-containing nucleoprotein 10 peptide can be analyzed by amino acid sequence.
- Complementary or “complementarity” refers to polynucleotides that are base-paired by allowable salt concentration and temperature conditions Ran combined.
- the sequence "C-TGA” can be combined with the complementary sequence "GA-C-T”.
- the complementarity between two single-stranded molecules may be partial or complete.
- the degree of complementarity between nucleic acid strands has a significant effect on the efficiency and strength of hybridization between nucleic acid strands.
- “Homology” refers to the degree of complementarity and can be partially homologous or completely homologous.
- Partial homology refers to a partially complementary sequence that at least partially inhibits hybridization of a fully complementary sequence to a target nucleic acid. This inhibition of hybridization can be detected by performing hybridization (Southern blotting or Nor thern blotting, etc.) under conditions of reduced stringency.
- Substantially homologous sequences or hybridization probes can compete and inhibit the binding of completely homologous sequences to the target sequence under conditions of reduced stringency. This does not mean that the conditions of reduced stringency allow non-specific binding, because the conditions of reduced stringency require that two sequences bind to each other as a specific or selective interaction.
- Percent identity refers to the percentage of sequences that are the same or similar in the comparison of two or more amino acid or nucleic acid sequences.
- the percent identity can be determined electronically, such as by the MEGALIGN program (Lasergene sof tware package, DNASTAR, Inc., Mad Son Wis.).
- the MEGALIGN program can compare two or more sequences (Higgins, D. G. and P. M. Sharp (1988) Gene 73: 237-244) according to different methods, such as the Clus ter method.
- the C l uster method arranges each group of sequences into clusters by checking the distance between all pairs. The clusters are then assigned in pairs or groups.
- the percent identity between two amino acid sequences such as sequence A and sequence B is calculated by the following formula:
- the percent identity between nucleic acid sequences can also be determined by the Clus ter method or by methods known in the art such as Jotun He in (He in J., (1990) Methods i n emzumo logy 183: 625-645).
- Similarity refers to the degree to which the amino acid residues at the corresponding positions are replaced by the same or conservative substitutions in the alignment between amino acid sequences.
- Amino acids used for conservative substitutions for example, negatively charged amino acids may include aspartic acid and glutamic acid; positively charged amino acids may include lysine and arginine; having an uncharged head group is Similar hydrophilic amino acids may include leucine, isoleucine and valine; glycine and alanine; asparagine and glutamine; serine and threonine; phenylalanine and tyrosine.
- Antisense refers to a nucleotide sequence that is complementary to a particular DNA or RNA sequence.
- Antisense strand refers to a nucleic acid strand that is complementary to a “sense strand.”
- Derivative refers to a chemical modification of HFP or a nucleic acid encoding it. This chemical modification may be the replacement of a hydrogen atom with an alkyl, acyl or amino group. Nucleic acid derivatives can encode polypeptides that retain the main biological properties of natural molecules.
- Antibody refers to a complete antibody molecule and its fragments, such as Fa, ⁇ ( ⁇ ') 2 and 1 ⁇ , which can specifically bind human Antigenic determinants of ATP / GTP binding domain of nuclear conversion protein 10.
- a “humanized antibody” refers to an antibody in which the amino acid sequence of a non-antigen binding region is replaced to become more similar to a human antibody, but still retains the original binding activity.
- isolated refers to the removal of a substance from its original environment (for example, its natural environment if it occurs naturally).
- a naturally occurring polynucleotide or polypeptide is not isolated when it is present in a living animal, but the same polynucleotide or polypeptide is separated from some or all of the substances that coexist with it in the natural system.
- Such a polynucleotide may be part of a vector, or such a polynucleotide or polypeptide may be part of a composition. Since the carrier or composition is not a component of its natural environment, they are still isolated.
- isolated refers to the separation of a substance from its original environment (if it is a natural substance, the original environment is the natural environment).
- polynucleotides and polypeptides in a natural state in a living cell are not isolated and purified, but the same polynucleotides or polypeptides are separated and purified if they are separated from other substances existing in the natural state. .
- isolated human ATP / GTP binding domain-containing nuclear conversion protein 1 0 refers to human ATP / GTP binding domain-containing nuclear conversion protein 1 0 that is substantially free of other proteins and lipids naturally associated with it. Class, sugar or other substance.
- Those skilled in the art can purify human ATP / GTP binding domain-containing nuclear conversion proteins 10 using standard protein purification techniques. Substantially pure polypeptides can produce a single main band on a non-reducing polyacrylamide gel. The purity of the human ATP / GTP binding domain-containing nucleoprotein 10 peptide can be analyzed by amino acid sequence.
- the present invention provides a novel polypeptide-to-human nuclear conversion protein 10 containing an ATP / GTP binding domain, which basically consists of the amino acid sequence shown in SEQ ID D N0: 2.
- the polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide, and preferably a recombinant polypeptide.
- the polypeptides of the present invention can be naturally purified products or chemically synthesized products, or can be produced from prokaryotic or eukaryotic hosts (eg, bacteria, yeast, higher plants, insects, and mammalian cells) using recombinant techniques. Depending on the host used in the recombinant production protocol, the polypeptide of the invention may be glycosylated, or it may be non-glycosylated. Polypeptides of the invention may also include or exclude starting methionine residues.
- the present invention also includes fragments, derivatives, and analogs of human ATP / GTP binding domain-containing nuclear conversion protein 10.
- fragment refers to a polypeptide that substantially maintains the same biological function or activity of the human ATP / GTP binding domain-containing nuclear conversion protein 10 of the present invention.
- a fragment, derivative or analog of the polypeptide of the present invention may be: (I) a kind in which one or more amino acid residues are replaced with conservative or non-conservative amino acid residues (preferably conservative amino acid residues), and the substitution
- the amino acid may or may not be encoded by the genetic code; or (II) such a type in which a group on one or more amino acid residues is substituted by other groups to include a substituent; or (III) such One in which the mature peptide is in combination with another compound (such as A peptide half-life compound, such as polyethylene glycol), or (IV) a polypeptide sequence (such as a leader sequence or a secreted sequence or a sequence used to purify the polypeptide) in which an additional amino acid sequence is fused into a mature polypeptide (Or proteomic sequences)
- a fragment, derivatives and analogs are considered to be within the knowledge of those skilled in the art.
- the present invention provides an isolated nucleic acid (polynucleotide), which basically consists of a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID NO: 2.
- the polynucleotide sequence of the present invention includes the nucleotide sequence of SEQ ID NO: 1.
- the polynucleotide of the present invention is found from a cDNA library of human fetal brain tissue. It contains a polynucleotide sequence with a total length of 579 bases, and its open reading frame (206-469) encodes 87 amino acids.
- This polypeptide has a characteristic sequence of a nuclear conversion protein and an ATP / GTP binding domain. It can be deduced that the human nuclear conversion protein 10 containing an ATP / GTP binding domain has the structure and function represented by the nuclear conversion protein.
- the polynucleotide of the present invention may be in the form of DNA or RNA.
- DNA forms include cDNA, genomic DNA, or synthetic DNA.
- DNA can be single-stranded or double-stranded.
- MA can be coded or non-coded.
- the coding region sequence encoding the mature polypeptide may be the same as the coding region sequence shown in SEQ ID NO: 1 or a degenerate variant.
- a "degenerate variant" refers to a nucleic acid sequence encoding a protein or polypeptide having SEQ ID NO: 2 but different from the coding region sequence shown in SEQ ID NO: 1 in the present invention.
- the polynucleotide encoding the mature polypeptide of SEQ ID NO: 2 includes: only the coding sequence of the mature polypeptide; the coding sequence of the mature polypeptide and various additional coding sequences; the coding sequence of the mature polypeptide (and optional additional coding sequences); Coding sequence.
- polynucleotide encoding a polypeptide refers to a polynucleotide comprising the polypeptide and a polynucleotide comprising additional coding and / or non-coding sequences.
- the invention also relates to variants of the polynucleotides described above, which encode polypeptides or fragments, analogs and derivatives of polypeptides having the same amino acid sequence as the invention.
- Variants of this polynucleotide can be naturally occurring allelic variants or non-naturally occurring variants. These nucleotide variants include substitution variants, deletion variants, and insertion variants.
- an allelic variant is an alternative form of a polynucleotide that may be a substitution, deletion, or insertion of one or more nucleotides, but does not substantially change the function of the polypeptide it encodes .
- the invention also relates to a polynucleotide that hybridizes to the sequence described above (having at least 50%, preferably 70% identity between the two sequences).
- the invention particularly relates to polynucleotides that can hybridize to the polynucleotides of the invention under stringent conditions.
- "strict conditions” means: (1) hybridization and elution at lower ionic strength and higher temperature, such as 0.2xSSC, 0.1% SDS, 60.
- the polypeptide encoded by the hybridizable polynucleotide has the same biological function and activity as the mature polypeptide shown in SEQ ID NO: 2.
- nucleic acid fragments that hybridize to the sequences described above.
- a "nucleic acid fragment” contains at least 10 nucleotides in length, preferably at least 20-30 nucleotides, more preferably at least 50-60 nucleotides, and most preferably at least 100 cores. Glycylic acid or more. Nucleic acid fragments can also be used in nucleic acid amplification techniques, such as PCR, to identify and / or isolate polynucleotides encoding human ATP / GTP binding domain-containing nucleoprotein 10.
- polypeptides and polynucleotides in the present invention are preferably provided in an isolated form and are more preferably purified to homogeneity.
- polynucleotide sequence of the present invention encoding human ATP / GTP binding domain-containing nuclear conversion protein 10 can be obtained by various methods.
- polynucleotides are isolated using hybridization techniques well known in the art. These techniques include, but are not limited to: 1) hybridization of probes to genomic or cDNA libraries to detect homologous polynucleotide sequences, and 2) antibody screening of expression libraries to detect cloned polynucleosides with common structural characteristics Acid fragments.
- the DNA fragment sequence of the present invention can also be obtained by the following methods: 1) Isolating a double-stranded DNA sequence from genomic DNA: 2) Chemically synthesizing a DNA sequence to obtain the double-stranded DM of the polypeptide.
- genomic DNA isolation is the least commonly used. Direct chemical synthesis of DNA sequences is often the method of choice. The more commonly used method is the isolation of cDNA sequences.
- the standard method for isolating the cDNA of interest is to isolate mRNA from donor cells that overexpress the gene and perform reverse transcription to form a plasmid or phage cDNA library. There are many mature techniques for mRNA extraction, and kits are also commercially available (Qiagene). Construction of cDNA libraries is also a common method (Sambrook, et al., Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory. New York, 1989). Commercially available cDNA libraries are also available, such as different cDNA libraries from Clontech. When combined with polymerase reaction technology, even very few expression products can be cloned.
- the genes of the present invention can be selected from these cDNA libraries by conventional methods. These methods include (but are not limited to): (DDNA-DA or DNA-RNA hybridization; (2) the presence or absence of a marker gene function; (3) determination of human ATP / GTP binding domain-containing nuclear transfer protein 10 transcription The current level; (4) Detecting the protein product of gene expression by immunological techniques or measuring biological activity. The above method can be used alone or in combination.
- the probe used for hybridization is homologous to any part of the polynucleotide of the present invention, and its length is at least 10 nucleotides, preferably at least 30 nucleotides, more preferably At least 50 nucleotides, preferably at least 100 nucleotides.
- the length of the probe is usually within 2,000 nucleotides, preferably within 1000 nucleotides.
- the probes used here are usually chemically synthesized based on the gene sequence information of the present invention. sequence. The genes or fragments of the present invention can of course be used as probes. DNA probes are labeled with radiation Sexual isotopes, luciferin or enzymes (such as alkaline phosphatase).
- the protein product of the human ATP / GTP binding domain-containing nuclear conversion protein 10 gene expression can be detected using immunological techniques such as Western blotting, radioimmunoprecipitation, and enzyme-linked immunosorbent assay (ELISA). Wait.
- immunological techniques such as Western blotting, radioimmunoprecipitation, and enzyme-linked immunosorbent assay (ELISA). Wait.
- a method of amplifying DNA / RNA by PCR is preferably used to obtain the gene of the present invention.
- the RACE method RACE-rapid amplification of cDNA ends
- the primers used for PCR may be appropriately based on the polynucleotide sequence information of the present invention disclosed herein. Select and synthesize using conventional methods.
- the amplified DNA / RNA fragments can be separated and purified by conventional methods such as by gel electrophoresis.
- polynucleotide sequence of the gene of the present invention or various DNA fragments and the like obtained as described above can be determined by a conventional method such as dideoxy chain termination method (Sanger et al. PNAS, 1977, 74: 5463-5467). Such polynucleotide sequencing can also be performed using commercial sequencing kits and the like. In order to obtain the full-length cDNA sequence, sequencing must be repeated. Sometimes it is necessary to determine the cDNA sequence of multiple clones in order to splice into a full-length cDNA sequence.
- the present invention also relates to a vector comprising the polynucleotide of the present invention, and a host cell produced by genetic engineering using the vector of the present invention or directly using a human ATP / GTP binding domain-containing nuclear conversion protein 10 coding sequence, and produced by recombinant technology A method of a polypeptide according to the invention.
- a polynucleotide sequence encoding a human ATP / GTP binding domain-containing nuclear conversion protein 10 can be inserted into a vector to constitute a recombinant vector containing the polynucleotide of the present invention.
- vector refers to bacterial plasmids, bacteriophages, yeast plasmids, plant cell viruses, mammalian cell viruses such as adenoviruses, retroviruses, or other vectors known in the art.
- Vectors suitable for use in the present invention include, but are not limited to: T7 promoter-based expression vectors (Rosenberg, et al.
- any plasmid and vector can be used to construct a recombinant expression vector.
- An important feature of expression vectors is that they usually contain an origin of replication, a promoter, a marker gene, and translational regulatory elements.
- Methods well known to those skilled in the art can be used to construct expression vectors containing MA sequences encoding human ATP / GTP binding domain-containing nuclear transfer protein 10 and suitable transcription / translation regulatory elements. These methods include in vitro recombinant DNA technology, DNA synthesis technology, and in vivo recombination technology (Sambroook, et al. Molecular Cloning, a Laboratory Manual, cold Spring Harbor Laboratory. New York, 1989).
- the DNA sequence can be operably linked to an appropriate promoter in an expression vector to guide mRNA synthesis.
- promoters are: l ac or trp promoter of E.
- the expression vector also includes a ribosome binding site and a transcription terminator for translation initiation. Insertion of enhancer sequences into the vector will enhance its transcription in higher eukaryotic cells. Enhancers are cis-acting factors for DNA expression, usually about 10 to 300 base pairs, which act on promoters to enhance gene transcription. Examples include 100 to 270 base pair SV40 enhancers on the late side of the origin of replication, polyoma enhancers and adenovirus enhancers on the late side of the origin of replication.
- the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase, neomycin resistance, and green for eukaryotic cell culture.
- selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase, neomycin resistance, and green for eukaryotic cell culture.
- GFP fluorescent protein
- tetracycline or ampicillin resistance for E. coli.
- a polynucleotide encoding a human ATP / GTP binding domain-containing nuclear conversion protein 10 or a recombinant vector containing the polynucleotide can be transformed or transduced into a host cell to constitute a polynucleotide containing the polynucleotide or the recombinant vector.
- Genetically engineered host cells refers to a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a mammalian cell.
- Escherichia coli, Streptomyces bacterial cells such as Salmonella typhimurium
- fungal cells such as yeast
- plant cells insect cells
- fly S2 or Sf 9 animal cells
- animal cells such as CH0, COS or Bowes melanoma cells.
- Transformation of a host cell with a DNA sequence described in the present invention or a recombinant vector containing the DNA sequence can be performed using conventional techniques well known to those skilled in the art.
- the host is a prokaryote, such as E. coli
- competent cells capable of absorbing DNA can be harvested after the exponential growth phase and treated with the CaCl 2 method. The steps used are well known in the art. Alternatively, MgCl 2 is used. If necessary, transformation can also be performed by electroporation.
- the host is a eukaryotic organism, the following DNA transfection methods can be used: calcium phosphate co-precipitation method, or conventional mechanical methods such as microinjection, electroporation, and liposome packaging.
- the polynucleotide sequence of the present invention can be used to express or produce recombinant human ATP / GTP binding domain-containing nuclear conversion protein 10 by conventional recombinant DNA technology (Scence, 1984; 224: 1431). Generally there are the following steps:
- Host cell (2) culturing host cells in a suitable medium;
- the medium used in the culture may be selected from various conventional media. Culture is performed under conditions suitable for host cell growth. After the host cells have grown to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
- a suitable method such as temperature conversion or chemical induction
- the recombinant polypeptide may be coated in a cell, expressed on a cell membrane, or secreted outside the cell.
- the physical, chemical, and other properties can be used to separate and purify the recombinant protein by various separation methods. These methods are well known to those skilled in the art. These methods include, but are not limited to: conventional renaturation treatment, protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion Exchange chromatography, high performance liquid chromatography (HPLC) and various other liquid chromatography techniques and combinations of these methods.
- conventional renaturation treatment protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion Exchange chromatography, high performance liquid
- FIG. 1 is a comparison diagram of the amino acid sequence homology of the nuclear transfer protein 10 containing the ATP / GTP binding domain of the present inventor with 47 amino acids in total and the nuclear transfer protein domain.
- the upper sequence is a human nuclear transfer protein 10 containing an ATP / GTP binding domain, and the lower sequence is a nuclear transfer protein domain.
- ⁇ "and” "indicate that the probability of different amino acids appearing at the same position between the two sequences decreases in sequence.
- FIG. 1 is a polyacrylamide gel electrophoresis image (SDS-PAGE) of an isolated human ATP / GTP binding domain-containing nuclear conversion protein 10 (SDS-PAGE).
- LOkDa is the molecular weight of the protein.
- the arrow indicates the isolated protein band.
- Example 1 Cloning of human ATP / GTP binding domain-containing nuclear transfer protein 10
- Total human fetal brain RNA was extracted by one-step method with guanidine isothiocyanate / phenol / chloroform.
- Poly (A) raRNA 0 2ug poly (A) mRNA was isolated from total RNA using Quik raRNA Isolation Kit (Qiegene) to form cDNA by reverse transcription.
- the Smart cDNA cloning kit purchased from Clontech was used to insert the cDNA fragment into the multicloning site of pBSK (+) vector (Clontech) to transform DH5cc to form a cDNA library.
- Dye terminate cycle reaction sequencing kit Perkin-Elmer
- ABI 377 automatic sequencer Perkin-Elmer
- the determined cDNA sequence was compared with the existing public DNA sequence database (Genebank), and it was found that the cDNA sequence of one clone 0623F07 was new DNA.
- a series of primers were synthesized to determine the inserted cDNA fragments of the clone in both directions.
- Example 2 Cloning of the gene encoding human ATP / GTP binding domain-containing nuclear transfer protein 10 by RT-PCR method. Using fetal brain cell total RNA as a template and oligo-dT as a primer for reverse transcription reaction to synthesize cDNA. Qiagene After purification of the kit, PCR amplification was performed with the following primers:
- Primer2 5'- TCATTCAACAAATGTTTATTAATAG- 3, (SEQ ID NO: 4)
- Primerl is a forward sequence located at the 5th end of SEQ ID NO: 1, starting at lbp;
- Primer2 is the 3 'end reverse sequence in SEQ ID NO: 1.
- Amplification reaction conditions reaction volume containing 50 ⁇ 1 of 5 0mmol / L KC1, 10mmol / L Tris- CI, (pH8.5), 1.5mmol / L MgCl 2, 200 ⁇ mol / L dNTP, lOpmol primer , 1U of Taq DNA polymerase (Clontech).
- the reaction was performed on a PE9600 DNA thermal cycler (Perkin-Elmer) for 25 cycles under the following conditions: 94. C 30sec; 55 ° C 30sec; 72 ° C 2min solicitAt the same time, set ⁇ -act in as a positive control and template blank as a negative control at the time of RT-PCR.
- Amplification products were purified using QIAGEN's kit and TA cloning kit Linked to the pCR vector (Unvitrogen product). DNA sequence analysis results show that the DNA sequence of the PCR product is exactly the same as the 1- 579bp shown in SEQ II) NO: 1.
- Example 3 Northern blot analysis of human ATP / GTP binding domain-containing nuclear transfer protein 10 gene expression:
- This method involves acid guanidinium thiocyanate-chloroform extraction. That is, the tissue is homogenized with 4M guanidine isothiocyanate-25mM sodium citrate, 0.2M sodium acetate (pH4.0), and 1 time volume of phenol and 1/5 volume of chloroform-isoamyl alcohol (49: 1 ) And centrifuge after mixing. Aspirate the aqueous layer, add isopropanol (0.8 vol) and centrifuge the mixture to obtain RNA precipitate. The resulting RNA pellet was washed with 70% ethanol, dried and dissolved in water.
- 32 P dATP labeled probe 32 P- DM prepared by the random primer Method - with ⁇ .
- the DNA probe used was the human ATP / GTP binding crust domain-containing nuclear conversion protein 10 coding region sequence (206p to 469bp) amplified by PCR shown in FIG.
- a 32P-labeled probe (approximately 2 10 ° cpm / ml) was hybridized with a nitrocellulose membrane to which RNA was transferred at 42 ° C overnight in a solution containing 50% formamide-25mM KH 2 P0 4 ( pH7.4) -5 x SSC-5 x Denhardt's solution and 200 ⁇ g / ml salmon sperm DN'A. After hybridization, the filters were washed in 1 x SSC-0.1% SDS at 55 C for 30 min.
- Phosphor Imager was used for analysis and determination Example 4: Recombinant human ATP / GTP binding domain-containing nuclear conversion protein 10 in vitro expression, isolation and purification
- a pair of specific amplification primers was designed with the following sequence: Primer3: 5'- CCCCATATGATGCTGCGAACAGCTGGAGGGCAGG- 3 '(Seq ID No: 5)
- Primer4 5'- CCCGAATTCTCAGAGACAATTACCATACACTACA- 3 '(Seq ID No: 6)
- the 5 'ends of these two primers contain Ndel and EcoRI restriction sites, respectively, followed by the coding sequences of the 5' and 3 'ends of the target gene, respectively.
- the Nde I and EcoR I restriction sites correspond to the expression vector plasmid ET- 28 b (+) (Novagen, Cat. No. 69865.3) a selective endonuclease site.
- PCR was performed using the pBS-0623F07 plasmid containing the full-length target gene as a template.
- the PCR reaction conditions were as follows: a total volume of 50 ⁇ 1 containing 10 pg of pBS-0623F07 plasmid, Primer-3 and Primer-4 were lOpmol Advantage polymerase Mix (Clontech) 1 ⁇ 1, respectively. Cycle parameters: 94 C 20s, 60 ° C 30s, 68 ° C 2 min, a total of 25 cycles. Ndel and EcoRI were used to double digest the amplified product and plasmid pET-28 (+), respectively, and large fragments were recovered and ligated with T4 ligase. The ligation product was transformed into colibacillus DH5a by calcium chloride method.
- the host bacteria BL21 (pET-0623F07) was cultured at 37 ° C to the logarithmic growth phase, and IPTG was added to a final concentration of 1 mmol / L, and continued Incubate for 5 hours.
- the bacteria were collected by centrifugation, and the supernatant was collected by centrifugation.
- the supernatant was collected by centrifugation.
- the purified ATP / GTP binding domain-containing nuclear conversion protein 10 was purified by SDS-PAGE electrophoresis, and a single band was obtained at 10 kDa ( Figure 2).
- the band was transferred to a PVDF membrane and the N-terminal amino acid sequence was analyzed by Edams hydrolysis method.
- the 15 amino acids at the N-terminus were identical to the 15 amino acid residues at the N-terminus shown in SEQ ID NO: 2.
- Example 6 Application of the polynucleotide fragment of the present invention as a hybridization probe
- Suitable oligonucleotide fragments selected from the polynucleotides of the present invention are used as hybridization probes in a variety of ways.
- the probes can be used to hybridize to genomic or cDNA libraries of normal tissue or pathological tissue from different sources to It is determined whether it contains the polynucleotide sequence of the present invention and a homologous polynucleotide sequence is detected.
- the probe can be used to detect the polynucleotide sequence of the present invention or its homologous polynucleotide sequence in normal tissues or Whether the expression in tissue cells is abnormal.
- the purpose of this embodiment is to select a suitable oligonucleotide fragment from the polynucleotide SEQ ID NO: 1 of the present invention as a hybridization probe, and to identify whether some tissues contain the polynucleoside of the present invention by a filter hybridization method.
- Filter hybridization methods include dot blotting, Southern blotting, Northern blotting, and copying methods. They all use the same steps to hybridize the fixed polynucleotide sample to the filter.
- the sample-immobilized filter is first pre-hybridized with a probe-free hybridization buffer so that the non-specific binding sites of the sample on the filter are saturated with the carrier and the synthetic polymer.
- the pre-hybridization solution is then replaced with a hybridization buffer containing labeled probes and incubated to hybridize the probes to the target nucleic acid.
- the unhybridized probes are removed by a series of membrane washing steps.
- This embodiment uses higher-intensity washing conditions (such as lower salt concentration and higher temperature) to reduce the hybridization background and retain only strong specific signals.
- the probes used in this embodiment include two types: the first type of probes are oligonucleotide fragments that are completely the same as or complementary to the polynucleotide SEQ ID NO: 1 of the present invention; the second type of probes are partially related to the present invention
- the polynucleotide SEQ ID NO: 1 is the same or complementary oligonucleotide fragment.
- the dot blot method is used to fix the sample on the filter membrane. Under the high-intensity washing conditions, the first type of probe and the sample have the strongest hybridization specificity and are retained.
- oligonucleotide fragment selected from the polynucleotide SEQ ID NO: 1 of the present invention for use as a hybridization probe should follow the following Principles and several aspects to consider:
- the preferred range of probe size is 18-50 nucleotides
- Those that meet the above conditions can be used as primary selection probes, and then further computer sequence analysis, including the primary selection probe and its source sequence region (ie, SEQ ID NO: 1) and other known genomic sequences and their complements The regions are compared for homology. If the homology with the non-target molecular region is greater than 85% or there are more than 15 consecutive bases, then the primary probe should not be used;
- Probe 1 (probel), which belongs to the first type of probe, is completely homologous or complementary to the gene fragment of SEQ ID NO: 1 (41Nt)
- Probe 2 which belongs to the second type of probe, is equivalent to the replacement mutant sequence of the gene fragment of SEQ ID NO: 1 or its complementary fragment (41Nt):
- PBS phosphate buffered saline
- phenol extraction method for DNA Steps 1) Wash the cells with 1-10 ml of cold PBS and centrifuge at 1,000 g for 10 minutes. 2) with cold cell lysate pelleted cells were resuspended (1 108 cells / ml) Minimum application lOOul lysis buffer. 3) Add SDS to a final concentration of 1%. If SDS is added directly to the cell pellet before resuspending the cells, the cells may form large clumps that are difficult to break, and reduce the overall yield. This is particularly serious when extracting> 10 7 cells. 4) Add proteinase K to a final concentration of 200ug / ml. 5) 50. C or incubated gently shaking for 1 hour at 37 D C overnight.
- step 8-13 are only used when contamination must be removed, otherwise step 14 can be performed directly.
- NC membranes nitrocellulose membranes
- the hybridization experiments performed under low-intensity membrane washing conditions showed no significant difference in the radioactivity of the above four probe hybrid spots; while the hybridization experiments performed under low-intensity membrane washing conditions, the radioactive intensity of probe 1 was significantly stronger than The radioactivity of the other three probe hybridization spots. Therefore, the probe 1 can be used to qualitatively and quantitatively analyze the presence and differential expression of the polynucleotide of the present invention in different tissues.
- polypeptides of the present invention as well as antagonists, agonists and inhibitors of the polypeptides, can be directly used in the treatment of diseases, for example, they can treat development disorders of the reproductive system, tumors and cancers of related tissues, and the like.
- the first stage of mammalian spermatogenesis is the beginning of sperm cell development, and the second stage is the formation of a complete, transcriptionally inactivated non-nucleosome structure through fusion and aggregation of chromatin.
- This fusion process involves the conversion of proteins.
- These specific conversion proteins play an important regulatory role in the second stage of mature sperm formation. Abnormal expression of these proteins will cause individuals to fail to form normal, mature sperm, which will cause various related reproductive system diseases
- Nuclear transfer protein 1 is one of the sperm cell-specific proteins and contains a specific nuclear transfer protein 1 domain The abnormal expression of this domain will directly lead to the abnormal function of the protein during spermatogenesis, which will cause various related diseases of the reproductive system and disorders of embryonic development.
- the abnormal expression of the human ATP / GTP binding domain-containing nuclear conversion protein 10 in the present invention will cause various diseases, especially diseases of the reproductive system and disorders of embryonic development. These diseases include, but are not limited to:
- testicular and epididymal inflammation testicular tumors such as seminoma, embryonic cancer, teratoma, chorionic carcinoma, yolk sac tumor, testicular stromal cell tumor, epididymal tumor, etc.
- Embryonic disorders spina bifida, craniocerebral fissure, anencephaly, cerebral bulge, foramen deformity, Down syndrome, congenital hydrocephalus, aqueduct malformation, dwarfism of cartilage hypoplasia, dysplasia of the spine Disease, pseudochondral dysplasia, Langer-Giedion syndrome, funnel chest, gonad hypoplasia, congenital adrenal hyperplasia, urethral fissure, crypt, with short stature syndromes such as Conradi syndrome and Danbol t-Cl os s syndrome, congenital glaucoma or cataract, congenital lens abnormality, congenital small eyelid fissure, retinal dysplasia, congenital optic nerve atrophy, congenital sensorineural hearing loss, cleft palsy, teratosis, Wi ll iams syndrome, Alagi l le syndrome, Bayer II Syndrome, etc.
- stature syndromes such as Conradi
- polypeptide of the present invention as well as its antagonists, agonists and inhibitors, can be directly used in the treatment of diseases, for example, it can treat various diseases, especially diseases of the reproductive system and disorders of embryonic development.
- the invention also provides methods for screening compounds to identify agents that increase (agonist) or repress (antagonist human ATP / GTP binding domain-containing nuclear conversion protein 10).
- Agonists enhance human ATP / GTP binding domain-containing nuclear Transforming protein 10 stimulates biological functions such as cell proliferation, and antagonists prevent and treat disorders related to excessive cell proliferation, such as various cancers.
- mammalian cells or human-expressing ATP / GTP-containing structures can be expressed in the presence of drugs
- a membrane preparation of nuclear transfer protein 10 of the domain was cultured with labeled human nuclear transfer protein 10 containing an ATP / GTP binding domain. The ability of the drug to increase or block this interaction was then determined.
- Antagonists of human ATP / GTP binding domain-containing nuclear transfer protein 10 include screened antibodies, compounds, receptor deletions, and the like. Antagonists of human ATP / GTP-binding domain-containing nucleoproteins 10 can bind to human ATP / GTP-binding domain-containing nucleoproteins 10 and eliminate their functions, or inhibit the production of the polypeptide, or with the polypeptide The active site binding prevents the polypeptide from performing biological functions.
- human ATP / GTP-binding domain-containing nuclear transfer protein 10 can be added to a bioanalytical assay. The effects of interactions between humans to determine whether a compound is an antagonist. Receptor deletions and analogs that act as antagonists can be screened in the same way as for screening compounds described above.
- Polypeptide molecules capable of binding to human ATP / GTP binding domain-containing nucleoprotein 10 can be obtained by screening a random peptide library composed of various possible combinations of amino acids bound to a solid phase. During screening, 10 human ATP / GTP binding domain-containing nuclear transduction proteins should be labeled.
- the present invention provides a method for producing an antibody using a polypeptide, a fragment, a derivative, an analog thereof, or a cell thereof as an antigen.
- These antibodies can be polyclonal or monoclonal antibodies.
- the present invention also provides antibodies directed against human ATP / GTP binding domain-containing nuclear conversion protein 10 epitopes. These antibodies include (but are not limited to): polyclonal antibodies, monoclonal antibodies, chimeric antibodies, single chain antibodies, Fab fragments, and fragments generated from Fab expression libraries.
- Polyclonal antibodies can be produced by injecting human ATP / GTP binding domain-containing nuclear transfer protein 10 directly into immunized animals (such as rabbits, mice, rats, etc.).
- immunized animals such as rabbits, mice, rats, etc.
- a variety of adjuvants can be used to enhance the immune response, including But it is not limited to Freund's adjuvant.
- Techniques for preparing human monoclonal antibodies containing ATP / GTP binding domain-containing nuclear transfer protein 10 include, but are not limited to, hybridoma technology (Kohler and Milstein. Nature, 1975, 256: 495-497), triple tumor technology, human beta- Cell hybridoma technology, EBV-hybridoma technology, etc.
- Human constant region and non-human variable region Bound chimeric antibodies can be produced using existing techniques (Morrson et al, PNAS, 1985, 81: 6851), and existing techniques for producing single-chain antibodies (0J. S. Pat No. 4946778) can also be used. Production of single-chain antibodies against human ATP / GTP binding domain-containing nuclear transfer protein 10.
- Antibodies against human ATP / GTP binding domain-containing nuclear transfer protein 10 can be used in immunohistochemical techniques to detect human ATP / GTP binding domain-containing nuclear transfer protein 10 in biopsy specimens.
- Monoclonal antibodies that bind to human ATP / GTP binding domain-containing nucleoprotein 10 can also be labeled with radioisotopes and injected into the body to track their location and distribution.
- This radiolabeled antibody can be used as a non-invasive diagnostic method to locate tumor cells and determine whether there is metastasis.
- Antibodies can also be used to design immunotoxins that target a particular part of the body.
- 10 High-affinity monoclonal antibodies can covalently bind to bacterial or phytotoxins (such as diphtheria toxin, ricin, ormosine, etc.).
- a common method is to attack the amino group of an antibody with a thiol cross-linking agent such as SPDP and bind the toxin to the antibody through the exchange of disulfide bonds.
- This hybrid antibody can be used to kill humans that contain the ATP / GTP binding domain.
- Nuclear transfer protein 10 positive cells are used to kill humans that contain the ATP / GTP binding domain.
- the antibodies of the present invention can be used to treat or prevent diseases related to human ATP / GTP binding domain-containing nuclear conversion protein 10.
- Administration of an appropriate dose of the antibody can stimulate or block the production or activity of human ATP / GTP binding domain-containing nuclear converter protein 10.
- the invention also relates to a diagnostic test method for the quantitative and localization detection of human ATP / GTP binding domain-containing nuclear converter protein 10 levels.
- tests are well known in the art and include FISH assays and radioimmunoassays.
- the level of human ATP / GTP binding domain-containing nuclear transfer protein 10 detected in the test can be used to explain the importance of human ATP / GTP binding domain-containing nuclear transfer protein 10 in various diseases and for diagnosis Diseases in which human ATP / GTP binding domain-containing nucleoprotein 10 functions.
- polypeptide of the present invention can also be used for peptide mapping analysis.
- the polypeptide can be specifically cleaved by physical, chemical or enzymatic analysis, and subjected to one-dimensional or two-dimensional or three-dimensional gel electrophoresis analysis, and more preferably mass spectrometry analysis.
- Polynucleotides encoding human ATP / GTP binding domain-containing nuclear conversion protein 10 can also be used for a variety of therapeutic purposes. Gene therapy technology can be used to treat abnormal cell proliferation, development, or metabolism caused by the non-expression or abnormal / inactive expression of human ATP / GTP binding domain-containing nuclear converter protein 10. Recombinant gene therapy vectors (such as viral vectors) can be designed to express mutated human ATP / GTP binding domain-containing nuclear conversion protein 10 to inhibit endogenous human ATP / GTP binding domain-containing nuclear conversion protein 10 activity.
- a mutated human ATP / GTP binding domain-containing nuclear transfer protein 10 may be a shortened human ATP / GTP binding domain-containing nuclear transfer protein 10 that lacks a signaling domain. Substrate binding, but lacks signaling activity. Therefore heavy
- the group of gene therapy vectors can be used for treating diseases caused by abnormal expression or activity of nuclear conversion protein 10 containing human ATP / GTP binding domain.
- Virus-derived expression vectors such as retrovirus, adenovirus, adenovirus-associated virus, herpes simplex virus, parvovirus, etc. can be used to transfer a polynucleotide encoding a human ATP / GTP binding domain-containing nuclear conversion protein 10 to a cell Inside.
- a recombinant viral vector carrying a polynucleotide encoding a human ATP / GTP binding domain-containing nuclear transfer protein 10 can be found in the literature (Sambrook, et al.).
- a recombinant polynucleotide encoding human ATP / GTP binding domain-containing nuclear transfer protein 10 can be packaged into liposomes and transferred into cells.
- Methods for introducing a polynucleotide into a tissue or cell include: directly injecting the polynucleotide into a tissue in vivo; or introducing the polynucleotide into a cell in vitro through a vector (such as a virus, phage, or plasmid), and then transplanting the cell Into the body and so on.
- a vector such as a virus, phage, or plasmid
- RNA and DNA Human oligonucleotides (including antisense RNA and DNA) containing ATP / GTP binding domain nucleoprotein 10 mRNA and ribozymes are also within the scope of the present invention.
- a ribozyme is an enzyme-like RNA molecule that specifically decomposes specific RNA. Its mechanism of action is that the ribozyme molecule specifically hybridizes with a complementary target RNA for endonucleation.
- Antisense RNA, DNA, and ribozymes can be obtained using any existing RNA or DNA synthesis technology, such as solid-phase phosphate amide chemical synthesis to synthesize oligonucleotides.
- Antisense RNA molecules can be obtained by in vitro or in vivo transcription of a DNA sequence encoding the RNA. This DNA sequence has been integrated downstream of the RNA polymerase promoter of the vector. In order to increase the stability of the nucleic acid molecule, it can be modified in a variety of ways, such as increasing the sequence length on both sides, and the linkage between ribonucleosides using phosphate thioester or peptide bonds instead of phosphodiester bonds.
- Polynucleotides encoding human ATP / GTP binding domain-containing nuclear conversion protein 10 can be used for the diagnosis of diseases related to human ATP / GTP binding domain-containing nuclear conversion protein 10.
- Polynucleotides encoding human ATP / GTP binding domain-containing nucleoproteins 10 can be used to detect the expression of human ATP / GTP binding domain-containing nucleoproteins 10 or human ATP / GTP binding structures in disease states Domain of Aberrant Expression of Nuclear Conversion Protein 10
- a DNA sequence encoding a human ATP / GTP binding domain-containing nuclear transfer protein 10 can be used to hybridize biopsy specimens to determine the expression of human ATP / GTP binding domain-containing nuclear transfer protein 10.
- Hybridization techniques include Southern blotting, Northern blotting, and in situ hybridization. These techniques and methods are publicly available mature techniques, and related kits are commercially available. Some or all of the polynucleotides of the present invention can be used as probes to be fixed on a microarray or a DNA chip (also referred to as a "gene chip") for analyzing differential expression analysis and gene diagnosis of genes in tissue.
- Human ATP / GTP binding domain-containing nucleoprotein 10 specific primers for RNA-polymerase chain reaction (RT-PCR) in vitro amplification can also detect human ATP / GTP binding domain-containing nucleoprotein 10 transcripts .
- Human ATP / GTP binding domain-containing nuclear transfer protein 10 mutant forms include point mutations, translocations, deletions, recombinations, and others compared to normal wild-type human ATP / GTP binding domain-containing nuclear conversion protein 10 DNA sequences Any exceptions etc. Mutations can be detected using existing techniques such as Southern blotting, DNA sequence analysis, PCR and in situ hybridization. In addition, mutations may affect protein expression, so Northern blotting and Western blotting can be used to indirectly determine whether a gene is mutated.
- sequences of the invention are also valuable for chromosome identification. This sequence will specifically target a specific position of a human chromosome and can hybridize with it. Currently, specific sites for each gene on the chromosome need to be identified. Currently, only a few chromosome markers based on actual sequence data (repeating polymorphisms) can be used to mark chromosome positions. According to the present invention, in order to associate these sequences with disease-related genes, an important first step is to locate these DNA sequences on a chromosome.
- PCR primers (preferably 15-35bp) are prepared based on cDNA, and the sequences can be mapped on chromosomes. These primers were then used for PCR screening of somatic hybrid cells containing individual human chromosomes. Only those hybrid cells containing human genes corresponding to the primers will produce amplified fragments.
- PCR localization of somatic hybrid cells is a quick way to localize DNA to specific chromosomes.
- oligonucleotide primers of the present invention in a similar manner, sublocalization can be achieved using a set of fragments from a specific chromosome or a large number of genomic clones.
- Other similar strategies that can be used for chromosomal localization include in situ hybridization, chromosome pre-screening with labeled flow sorting, and hybrid pre-selection to construct chromosome-specific cDNA libraries.
- Fluorescent in situ hybridization of cDNA clones with metaphase chromosomes allows precise chromosomal localization in one step.
- FISH Fluorescent in situ hybridization
- the physical location of the sequence on the chromosome can be correlated with the genetic map data. These data can be found in, for example, V. Mckusick, Mendelian Inheritance in Man (available online with Johns Hopkins University Welch Medical Library). Linkage analysis can then be used to determine the relationship between genes and diseases that have been mapped to chromosomal regions.
- cDNA or genomic sequences between the affected and unaffected individuals need to be determined. If a mutation is observed in some diseased individuals and the mutation is not observed in any normal individuals, the mutation may be the cause of the disease. Comparing affected and unaffected individuals usually involves first looking for structural changes in the chromosome, such as deletions or translocations that are visible at the chromosomal level or detectable using cDNA sequence-based PCR. Based on the resolution capabilities of current physical mapping and gene mapping technologies, they are accurately mapped to disease-related chromosomal regions. cDNA can be one of between 50 and 500 potentially pathogenic genes (assuming 1 megabase mapping resolution and one gene per 20 kb).
- the polypeptides, polynucleotides and mimetics, agonists, antagonists and inhibitors of the present invention can be used in combination with a suitable pharmaceutical carrier.
- suitable pharmaceutical carrier can be water, glucose, ethanol, salts, buffers, glycerol, and combinations thereof.
- the composition contains a safe and effective amount of the polypeptide or antagonist, and carriers and excipients that do not affect the effect of the drug. These compositions can be used as drugs for the treatment of diseases.
- the invention also provides a kit or kit containing one or more containers containing one or more ingredients of the pharmaceutical composition of the invention.
- these containers there may be instructional instructions given by government agencies that manufacture, use, or sell pharmaceuticals or biological products, which prompts permission for administration on the human body by government agencies that manufacture, use, or sell them.
- the polypeptides of the invention can be used in combination with other therapeutic compounds.
- the pharmaceutical composition can be administered in a convenient manner, such as by a topical, intravenous, intraperitoneal, intramuscular, subcutaneous, intranasal or intradermal route of administration.
- Human ATP / GTP binding domain-containing nuclear conversion protein 10 is administered in an amount effective to treat and / or prevent a specific indication.
- the amount and dose range of human ATP / GTP binding domain-containing nuclear conversion protein 10 administered to a patient will depend on many factors, such as the mode of administration, the health conditions of the person to be treated, and the judgment of the diagnostician.
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Abstract
Description
一种新的多 ft—一人含 ATP/GTP结合结构域的梭转换蛋白 10和编码这种多肽的多核苷酸 技术领域 A new multi-ft-human shuttle-converting protein 10 containing an ATP / GTP binding domain and a polynucleotide encoding the polypeptide TECHNICAL FIELD
本发明属于生物技术领域, 具体地说, 本发明描述了一种新的多肽一一人含 ATP/GTP 结合结构域的核转换蛋白 10, 以及编码此多肽的多核苷酸序列。 本发明还涉及此多核苷 酸和多肽的制备方法和应用。 背景技术 The present invention belongs to the field of biotechnology. Specifically, the present invention describes a new polypeptide, a human nuclear transfer protein 10 containing an ATP / GTP binding domain, and a polynucleotide sequence encoding the polypeptide. The invention also relates to a preparation method and application of the polynucleotide and polypeptide. Background technique
精子形成过程是一配子经过逐步地分化, 最终形成成熟的精子细胞的过程。 在哺乳 动物中, 精子形成的第一阶段即为精子细胞发育的开始, 这一阶段与染色质结构的变化 相关; 第二阶段即通过染色质的融合及聚集形成完整的、 转录失活的非核小体结构。 这 一融合过程包含两个蛋白的转变。 第一个转换是由许多精子细胞特异蛋白介导的组氨酸 变换及替代过程, 而这些蛋白在第二个转换过程中被一个或两个脯氨酸所替代。 这些精 子细胞特异的蛋白在成熟精子形成的第二阶段起着重要的调节作用, 这些蛋白的表达异 常将导致个体无法形成正常的、成熟的精子,从而引发各种相关的生殖系统疾病 [Frederic CHIRAT, Arlette MARTINAGE et al. , Eur. J. Biochem. 1991, 198: 13—20]。 Sperm formation is a process in which a gamete is gradually differentiated and finally forms a mature sperm cell. In mammals, the first stage of sperm formation is the beginning of sperm cell development, and this stage is related to changes in chromatin structure; the second stage is to form a complete, transcriptionally inactive non-nucleus through fusion and aggregation of chromatin Body structure. This fusion process involves the transformation of two proteins. The first transformation is a histidine transformation and replacement process mediated by many sperm cell-specific proteins, and these proteins are replaced by one or two prolines in the second transformation process. These sperm cell-specific proteins play an important regulatory role in the second stage of mature sperm formation. Abnormal expression of these proteins will cause individuals to fail to form normal, mature sperm, which will cause various related reproductive system diseases [Frederic CHIRAT , Arlette MARTINAGE et al., Eur. J. Biochem. 1991, 198: 13-20].
人们早已从大鼠及小鼠中克隆得到了 TP1、 ΤΡ2、 ΤΡ3及 ΤΡ4四个转换蛋白, 其中对 TP1 及 ΤΡ2的研究较为详细。随后人们又从人、牛中克隆得到了与鼠 TP1蛋白相似的人及牛 TP 1 蛋白。 其中牛 TP1 蛋白含有一个半胱氨酸残基, 而人 TP1 蛋白与鼠 TP1 相似, 不含半胱 氨酸残基。 这些蛋白均在这些生物的精子形成过程中发挥重要的调节作用。 People have long cloned TP1, TP2, TP3, and TP4 from rat and mouse. Among them, the study of TP1 and TP2 is more detailed. Subsequently, human and bovine TP 1 proteins similar to the mouse TP1 protein were cloned from humans and cattle. The bovine TP1 protein contains a cysteine residue, while the human TP1 protein is similar to the mouse TP1 and does not contain a cysteine residue. These proteins all play important regulatory roles in the spermatogenesis of these organisms.
核转换蛋白 1 是精子细胞特异蛋白中的一种, 该转换蛋白由 54 个氨基酸残基组成, 其序列在哺乳动物中是高度保守的。 我们在第 28-34 个氨基酸位点找到了一 7 个氨基酸 长的信号片段, 这一片段的氨基酸序列如下: S- K- R- K- Y-R- K。 该序列片段含有一个酪 ¾ 酸残基及四个丝氨酸残基, 这四个位点是蛋白磷酸化的作用位点, 其中酪氨酸位点在蛋 白与 ΜΑ 相互作用过程中, 对染色质的不稳定性是必需的; 而丝氨酸位点的磷酸化对于 蛋白与 DNA 的相互作用也是必需的, 其可能调节着蛋白正确地结合到 DNA 的特定位点上。 该结构域的表达异常将直接导致蛋白在精子形成过程中的功能异常, 从而引发各种相 的生殖系统疾病。 Nuclear transfer protein 1 is one of the sperm cell-specific proteins. The conversion protein consists of 54 amino acid residues, and its sequence is highly conserved in mammals. We found a 7 amino acid long signal fragment at the 28th to 34th amino acid positions. The amino acid sequence of this fragment is as follows: S-K-R-K-Y-R-K. This sequence fragment contains a tyrosine residue and four serine residues. These four sites are the sites of protein phosphorylation. Among them, the tyrosine site is responsible for chromatin during protein-MA interaction. Instability is required; and the phosphorylation of the serine site is also necessary for protein-DNA interactions, which may regulate the correct binding of the protein to specific sites in the DNA. The abnormal expression of this domain will directly lead to the abnormal function of the protein during spermatogenesis, which will cause various phases of reproductive system diseases.
ΑΤΡ 或 GTP 结合基序是各种 ATP/GTP 结合蛋白中普遍存在的结构域, 一些连接 ΑΤΡ 或 GTP 的蛋白都或多或少含有这一保守的 mot i f 序列, 该基序具有保守的特征性序列片 段: [AG] - X( 4 )- G- K- [ST] (其中 X为任意氨基酸残基)。这些 mot i f 中最为保守的是 gl yc i ne 富集区域, 这一区域在 (3线与 α螺旋之间形成一个易弯曲的环。 这一弯曲环通常与核苷 酸上的某一磷酸基团反应, 该 mot i f 序列通常被称为 "A" 共有序列或 P环。 该基序在生 物体内通常负责与 ATP、 GTP 结合, 为蛋白发挥生物学功能提供所需的能量及稳定蛋白在 生物体内的结构, 协助蛋白完成其正常的生理学功能。 其表达异常将直接导致一些蛋白 的异常表达及功能异常, 从而引发各相关组织的发育紊乱、 肿瘤及癌症的发生。 ATP or GTP binding motifs are ubiquitous domains in various ATP / GTP binding proteins. Some are connected to ATP Both GTP and GTP proteins more or less contain this conserved mot if sequence, which has a conserved characteristic sequence fragment: [AG]-X (4)-G- K- [ST] (where X is arbitrary Amino acid residues). The most conserved of these mot if is the gl yc i ne enriched region, which forms a flexible loop between the (3-line and the alpha helix. This curved loop is usually associated with a phosphate group on the nucleotide Group reaction, the mot if sequence is usually called "A" consensus sequence or P loop. This motif is usually responsible for binding with ATP and GTP in the organism, providing the energy required for the protein to perform biological functions and stabilizing the protein in the organism. The structure of the body assists the protein to complete its normal physiological function. Abnormal expression will directly lead to the abnormal expression and function of some proteins, which will cause developmental disorders of various tissues, tumors and cancers.
本发明的新的人含 ATP/GTP结合结构域的核转换蛋白 10与其他核转换蛋白相似, 亦 含有保守的由 7 个氨基酸残基组成的信号片段, 且含有一 ATP/GTP 结合结构域。 因而, 该蛋白为一种新的人含 ATP/GTP 结合结构域的核转换蛋白, 且与其他核转换蛋白相似, 具有类似的生物学功能, 在体内与一些生殖系统疾病的发生密切相关。 The new human nuclear transfer protein 10 containing an ATP / GTP binding domain is similar to other nuclear transfer proteins. It also contains a conserved signal fragment consisting of 7 amino acid residues and contains an ATP / GTP binding domain. Therefore, this protein is a new type of human nuclear conversion protein containing ATP / GTP binding domain, and is similar to other nuclear conversion proteins, has similar biological functions, and is closely related to the occurrence of some reproductive system diseases in vivo.
由于如上所述人含 ATP/GTP结合结构域的核转换蛋白 10蛋白在机体重要功能中起重 要作用, 而且相信这些调节过程中涉及大量的蛋白, 因而本领域中一直需要鉴定更多畚 与这些过程的人含 ATP/GTP结合结构域的核转换蛋白 10蛋白, 特别是鉴定这种蛋白的氨 基酸序列。 新人含 ATP/GTP结合结构域的核转换蛋白 10蛋白编码基因的分离也为研究确 定该蛋白在健康和疾病状态下的作用提供了基础。 这种蛋白可能构成开发疾病诊断和 /或 治疗药的基础, 因此分离其编码 DNA是非常重要的。 发明的公开 Since the human ATP / GTP binding domain-containing nuclear transfer protein 10 protein plays an important role in important functions of the body as described above, and it is believed that a large number of proteins are involved in these regulatory processes, more needs to be identified in the art Processes the human ATP / GTP binding domain-containing nuclear transfer protein 10 protein, and in particular the amino acid sequence of this protein is identified. Isolation of the ATP / GTP binding domain-containing nuclear conversion protein 10 protein encoding genes in newcomers also provides a basis for research to determine the role of this protein in health and disease states. This protein may form the basis for the development of diagnostic and / or therapeutic drugs for diseases, so isolating its coding DNA is important. Disclosure of invention
本发明的一个目的是提供分离的新的多肽一一人含 ATP/GTP结合结构域的核转换蛋白 10 以及其片段、 类似物和衍生物。 It is an object of the present invention to provide isolated novel polypeptides-human nuclear conversion proteins 10 containing ATP / GTP binding domains, and fragments, analogs and derivatives thereof.
本发明的另一个目的是提供编码该多肽的多核苷酸。 Another object of the invention is to provide a polynucleotide encoding the polypeptide.
本发明的另一个目的是提供含有编码人含 ATP/GTP 结合结构域的核转换蛋白 10 的多 核苷酸的重组载体。 Another object of the present invention is to provide a recombinant vector containing a polynucleotide encoding a human ATP / GTP binding domain-containing nuclear conversion protein 10.
本发明的另一个目的是提供含有编码人含 ATP/GTP 结合结构域的核转换蛋白 10 的 % 核苷酸的基因工程化宿主细胞。 Another object of the present invention is to provide a genetically engineered host cell containing 10% nucleotides encoding a human ATP / GTP binding domain-containing nuclear conversion protein.
本发明的另一个目的是提供生产人含 ATP/GTP结合结构域的核转换蛋白 10的方法。 本发明的另一个目的是提供针对本发明的多肽一一人含 ATP/GTP结合结构域的核转换 蛋白 1 0的抗体。 Another object of the present invention is to provide a method for producing a human ATP / GTP binding domain-containing nuclear conversion protein 10. Another object of the present invention is to provide an antibody against a human-to-human ATP / GTP binding domain-containing nuclear conversion protein 10 of the polypeptide of the present invention.
本发明的另一个目的是提供了针对本发明多肽一一人含 ATP/GTP 结合结构域的核转 换蛋白 10的模拟化合物、 拮抗剂、 激动剂、 抑制剂。 Another object of the present invention is to provide mimetic compounds, antagonists, agonists, and inhibitors of the nuclear transfer protein 10 containing ATP / GTP binding domains of the polypeptide of the present invention.
本发明的另一个目的是提供诊断治疗与人含 ATP/GTP结合结构域的核转换蛋白 10异常相 关的疾病的方法。 Another object of the present invention is to provide diagnosis and treatment of human ATP / GTP binding domain-containing nuclear converter protein 10 abnormal phase. Related diseases.
本发明涉及一种分离的多肽, 该多肽是人源的, 它包含: 具有 SEQ ID No. 2 氨基酸 序列的多肽、或其保守性变体、生物活性片段或衍生物。较佳地,该多肽是具有 SEQ I D NO: 2氨基酸序列的多肽。 The present invention relates to an isolated polypeptide, which is of human origin and comprises: a polypeptide having the amino acid sequence of SEQ ID No. 2, or a conservative variant, biologically active fragment or derivative thereof. Preferably, the polypeptide is a polypeptide having the amino acid sequence of SEQ ID NO: 2.
本发明还涉及一种分离的多核苷酸, 它包含选自下组的一种核苷酸序列或其变体: The invention also relates to an isolated polynucleotide comprising a nucleotide sequence or a variant thereof selected from the group consisting of:
(a)编码具有 SEQ ID No. 2氨基酸序列的多肽的多核苷酸; (a) a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID No. 2;
(b)与多核苷酸(a)互补的多核苷酸; (b) a polynucleotide complementary to polynucleotide (a);
(c)与(a)或(b)的多核苷酸序列具有至少 70%相同性的多核苷酸。 (c) A polynucleotide having at least 70% identity to a polynucleotide sequence of (a) or (b).
更佳地, 该多核苷酸的序列是选自下组的一种: (a)具有 SEQ I D NO: 1 中 206-469 位的序列; 和(b)具有 SEQ ID NO: 1 中 1-579位的序列。 More preferably, the sequence of the polynucleotide is one selected from the group consisting of: (a) a sequence having positions 206-469 in SEQ ID NO: 1; and (b) a sequence having 1-577 in SEQ ID NO: 1 Sequence of bits.
本发明另外涉及一种含有本发明多核苷酸的载体, 特别是表达载体; 一种用该载体 遗传工程化的宿主细胞, 包括转化、 转导或转染的宿主细胞; 一种包括培养所述宿主细 胞和回收表达产物的制备本发明多肽的方法。 The invention further relates to a vector, in particular an expression vector, containing the polynucleotide of the invention; a host cell genetically engineered with the vector, including a transformed, transduced or transfected host cell; and a method comprising culturing said Host cell and method of preparing the polypeptide of the present invention by recovering the expression product.
本发明还涉及一种能与本发明多肽特异性结合的抗体。 The invention also relates to an antibody capable of specifically binding to a polypeptide of the invention.
本发明还涉及一种筛选的模拟、 激活、 拮抗或抑制人含 ATP/GTP结合结构域的核转 换蛋白 1 0蛋白活性的化合物的方法, 其包括利用本发明的多肽。 本发明还涉及用该方法 获得的化合物。 The present invention also relates to a method for screening compounds that mimic, activate, antagonize or inhibit human ATP / GTP binding domain-containing nuclear transduction protein 10 protein activity, which comprises utilizing the polypeptide of the present invention. The invention also relates to compounds obtained by this method.
本发明还涉及一种体外检测与人含 ATP/GTP结合结构域的核转换蛋白 1 0蛋白异常 表达关的疾病或疾病易感性的方法, 包括检测生物样品中所述多肽或其编码多核苷酸序 列中的突变, 或者检测生物样品中本发明多肽的量或生物活性。 The invention also relates to a method for in vitro detection of a disease or disease susceptibility related to abnormal expression of a nuclear conversion protein 10 protein containing human ATP / GTP binding domain, which comprises detecting the polypeptide or a polynucleotide encoding the same in a biological sample. A mutation in a sequence, or the amount or biological activity of a polypeptide of the invention in a biological sample is detected.
本发明也涉及一种药物组合物, 它含有本发明多肽或其模拟物、 激活剂、 拮抗剂或 抑制剂以及药学上可接受的载体。 The present invention also relates to a pharmaceutical composition comprising a polypeptide of the present invention or a mimetic thereof, an activator, an antagonist or an inhibitor, and a pharmaceutically acceptable carrier.
本发明还涉及本发明的多肽和 /或多核苷酸在制备用于治疗一些生殖系统疾病、 相关 组织的发育紊乱症、 肿瘤及癌症等或其它由于人含 ATP/GTP结合结构域的核转换蛋白 1 0 表达异常所引起疾病的药物的用途。 The present invention also relates to the preparation of polypeptides and / or polynucleotides of the present invention for the treatment of some reproductive system diseases, developmental disorders of related tissues, tumors and cancers or other nuclear conversion proteins due to humans containing an ATP / GTP binding domain. 10 Use of a medicine for diseases caused by abnormal expression.
本发明的其它方面由于本文的技术的公开, 对本领域的技术人员而言是显而易见的。 本说明书和权利要求书中使用的下列术语除非特别说明具有如下的含义: Other aspects of the invention will be apparent to those skilled in the art from the disclosure of the techniques herein. The following terms used in this specification and claims have the following meanings unless specifically stated otherwise:
"核酸序列" 是指寡核苷酸、 核苷酸或多核苷酸及其片段或部分, 也可以指基因组或合 成的 Ww\或 RNA, 它们可以是单链或双链的, 代表有义链或反义链。 类似地, 术语 " 基 酸序列" 是指寡肽、 肽、 多肽或蛋白质序列及其片段或部分。 当本发明中的 "氨基酸序 列" 涉及一种天然存在的蛋白质分子的氨基酸序列时, 这种 "多肽" 或 "蛋白质" 不意 味着将氨基酸序列限制为与所述蛋白质分子相关的完整的天然氨基酸。 "Nucleic acid sequence" refers to oligonucleotides, nucleotides or polynucleotides and fragments or parts thereof, and can also refer to genomic or synthetic Ww \ or RNA, which can be single-stranded or double-stranded, representing the sense strand Or antisense strand. Similarly, the term "amino acid sequence" refers to an oligopeptide, peptide, polypeptide or protein sequence and fragments or portions thereof. When the "amino acid sequence" in the present invention When "column" relates to the amino acid sequence of a naturally occurring protein molecule, such "polypeptide" or "protein" is not meant to limit the amino acid sequence to the complete natural amino acid associated with the protein molecule.
蛋白质或多核苷酸 "变体" 是指一种具有一个或多个氨基酸或核苷酸改变的氨基酸 序列或编码它的多核苷酸序列。 所述改变可包括氨基酸序列或核苷酸序列中氨基酸或核 苷酸的缺失、 插入或替换 变体可具有 "保守性" 改变, 其中替换的氨基酸具有与原氨 基酸相类似的结构或化学性质, 如用亮氨酸替换异亮氨酸。 变体也可具有非保守性改变, 如用色氨酸替换甘氨酸。 A protein or polynucleotide "variant" refers to an amino acid sequence having one or more amino acids or nucleotide changes or a polynucleotide sequence encoding it. The changes may include deletions, insertions or substitutions of amino acids or nucleotides in the amino acid sequence or nucleotide sequence, which may have "conservative" changes, wherein the substituted amino acid has a structural or chemical property similar to the original amino acid, Such as replacing leucine with leucine. Variants can also have non-conservative changes, such as replacing glycine with tryptophan.
"缺失" 是指在氨基酸序列或核苷酸序列中一个或多个氨基酸或核苷酸的缺失。 "Deletion" refers to the deletion of one or more amino acids or nucleotides in an amino acid sequence or nucleotide sequence.
"插入" 或 "添加" 是指在氨基酸序列或核苷酸序列中的改变导致与天然存在的分子 相比, 一个或多个氨基酸或核苷酸的增加。 "替换" 是指由不同的氨基酸或核苷酸替换一 个或多个氨基酸或核苷酸。 "Insertion" or "addition" refers to an alteration in the amino acid sequence or nucleotide sequence that results in an increase in one or more amino acids or nucleotides compared to a naturally occurring molecule. "Replacement" refers to the replacement of one or more amino acids or nucleotides with different amino acids or nucleotides.
"生物活性" 是指具有天然分子的结构、 调控或生物化学功能的蛋白质。 类似地, 术 语 "免疫学活性" 是指天然的、 重组的或合成蛋白质及其片段在合适的动物或细胞中诱 导特定免疫反应以及与特异性抗体结合的能力。 "Biological activity" refers to a protein that has the structure, regulation, or biochemical function of a natural molecule. Similarly, the term "immunological activity" refers to the ability of natural, recombinant or synthetic proteins and fragments thereof to induce a specific immune response and to bind to specific antibodies in a suitable animal or cell.
"激动剂" 是指当与人含 ATP/GTP结合结构域的核转换蛋白 1 0结合时, 一种可引起该 蛋白质改变从而调节该蛋白质活性的分子。 激动剂可以包括蛋白质、 核酸、 碳水化合物 或任何其它可结合人含 ATP/GTP结合结构域的核转换蛋白 1 0的分子。 An "agonist" refers to a molecule that, when combined with a human ATP / GTP binding domain-containing nuclear conversion protein 10, can cause the protein to change, thereby regulating the activity of the protein. An agonist may include a protein, a nucleic acid, a carbohydrate, or any other molecule that binds to a human ATP / GTP binding domain-containing nuclear conversion protein 10.
"拮抗剂" 或 "抑制物" 是指当与人含 ATP/GTP结合结构域的核转换蛋白 1 0结合时, 一种可封闭或调节人含 ATP /GTP结合结构域的核转换蛋白 1 0的生物学活性或免疫学活性的 分子。 拮抗剂和抑制物可以包括蛋白质、核酸、碳水化合物或任何其它可结合人含 ATP /GTP 结合结构域的核转换蛋白 1 0的分子。 An "antagonist" or "inhibitor" refers to a nuclear conversion protein that can block or regulate human ATP / GTP binding domain-containing 1 when it binds to a human ATP / GTP binding domain-containing nuclear conversion protein. A biologically or immunologically active molecule. Antagonists and inhibitors may include proteins, nucleic acids, carbohydrates, or any other molecule that binds to a human ATP / GTP binding domain-containing nuclear conversion protein 10.
"调节" 是指人含 ATP/GTP结合结构域的核转换蛋白 1 0的功能发生改变, 包括蛋白质 活性的升高或降低、 结合特性的改变及人含 ATP/GTP结合结构域的核转换蛋白 1 0的任何其 它生物学性质、 功能或免疫性质的改变。 "Regulation" refers to a change in the function of a human ATP / GTP binding domain-containing nuclear conversion protein 10, including an increase or decrease in protein activity, a change in binding characteristics, and a human ATP / GTP binding domain-containing nuclear conversion protein. Any other biological, functional, or immunological changes.
"基本上纯"是指基本上不含天然与其相关的其它蛋白、 脂类、 糖类或其它物质。 本 领域的技术人员能用标准的蛋白质纯化技术纯化人含 ATP/GTP 结合结构域的核转换蛋白 1 0。 基本上纯的人含 ATP/GTP结合结构域的核转换蛋白 1 0在非还原性聚丙烯酰胺凝胶上 能产生单一的主带。 人含 ATP/GTP结合结构域的核转换蛋白 1 0 多肽的纯度可用氨基酸序 列分析。 "Substantially pure" means substantially free of other proteins, lipids, sugars or other substances with which it is naturally associated. Those skilled in the art can purify human ATP / GTP binding domain-containing nuclear conversion proteins 10 using standard protein purification techniques. Substantially pure human ATP / GTP binding domain-containing nuclear transfer protein 10 produces a single main band on a non-reducing polyacrylamide gel. The purity of the human ATP / GTP binding domain-containing nucleoprotein 10 peptide can be analyzed by amino acid sequence.
"互补的" 或 "互补" 是指在允许的盐浓度和温度条件下通过碱基配对的多核苷酸天 然结合。 例如, 序列 "C- T-G-A" 可与互补的序列 "G-A- C- T" 结合。 两个单链分子之间 的互补可以是部分的或全部的。 核酸链之间的互补程度对于核酸链之间杂交的效率及强 度有明显影响。 "Complementary" or "complementarity" refers to polynucleotides that are base-paired by allowable salt concentration and temperature conditions Ran combined. For example, the sequence "C-TGA" can be combined with the complementary sequence "GA-C-T". The complementarity between two single-stranded molecules may be partial or complete. The degree of complementarity between nucleic acid strands has a significant effect on the efficiency and strength of hybridization between nucleic acid strands.
"同源性" 是指互补的程度, 可以是部分同源或完全同源。 "部分同源" 是指一种部 分互补的序列, 其至少可部分抑制完全互补的序列与靶核酸的杂交。 这种杂交的抑制可 通过在严格性程度降低的条件下进行杂交 (Southern印迹或 Nor thern印迹等) 来检测。 基本上同源的序列或杂交探针可竟争和抑制完全同源的序列与靶序列在的严格性程度降 低的条件下的结合。 这并不意味严格性程度降低的条件允许非特异性结合, 因为严格性 程度降低的条件要求两条序列相互的结合为特异性或选择性相互作用。 "Homology" refers to the degree of complementarity and can be partially homologous or completely homologous. "Partial homology" refers to a partially complementary sequence that at least partially inhibits hybridization of a fully complementary sequence to a target nucleic acid. This inhibition of hybridization can be detected by performing hybridization (Southern blotting or Nor thern blotting, etc.) under conditions of reduced stringency. Substantially homologous sequences or hybridization probes can compete and inhibit the binding of completely homologous sequences to the target sequence under conditions of reduced stringency. This does not mean that the conditions of reduced stringency allow non-specific binding, because the conditions of reduced stringency require that two sequences bind to each other as a specific or selective interaction.
"相同性百分率" 是指在两种或多种氨基酸或核酸序列比较中序列相同或相似的百分 率。可用电子方法测定相同性百分率,如通过 MEGALIGN程序(Lasergene sof tware package, DNASTAR, I nc. , Mad i son Wi s. )。 MEGALIGN程序可根据不同的方法如 Clus ter法比较两种 或多种序列(H i gg ins , D. G. 和 P. M. Sharp (1988) Gene 73: 237-244)。 C l us ter法通 过检査所有配对之间的距离将各组序列排列成簇。 然后将各簇以成对或成组分配。 两个 氨基酸序列如序列 A和序列 B之间的相同性百分率通过下式计算: "Percent identity" refers to the percentage of sequences that are the same or similar in the comparison of two or more amino acid or nucleic acid sequences. The percent identity can be determined electronically, such as by the MEGALIGN program (Lasergene sof tware package, DNASTAR, Inc., Mad Son Wis.). The MEGALIGN program can compare two or more sequences (Higgins, D. G. and P. M. Sharp (1988) Gene 73: 237-244) according to different methods, such as the Clus ter method. The C l uster method arranges each group of sequences into clusters by checking the distance between all pairs. The clusters are then assigned in pairs or groups. The percent identity between two amino acid sequences such as sequence A and sequence B is calculated by the following formula:
序列 A与序列 B之间匹配的残基个数 Number of matching residues between sequence A and sequence B
1 00 序列 A的残基数一序列 A中间隔残基数一序列 B中间隔残基数 1 00 Number of residues in sequence A-number of interval residues in sequence A-number of interval residues in sequence B
也可以通过 Clus ter法或用本领域周知的方法如 Jotun He in 测定核酸序列之间的相同 性百分率(He in J. , (1990) Methods i n emzumo logy 183: 625-645)„ The percent identity between nucleic acid sequences can also be determined by the Clus ter method or by methods known in the art such as Jotun He in (He in J., (1990) Methods i n emzumo logy 183: 625-645).
"相似性" 是指氨基酸序列之间排列对比时相应位置氨基酸残基的相同或保守性取 代的程度。 用于保守性取代的氨基酸例如, 带负电荷的氨基酸可包括天冬氨酸和谷氨酸; 带正电荷的氨基酸可包括赖氨酸和精氨酸; 具有不带电荷的头部基团有相似亲水性的氨 基酸可包括亮氨酸、 异亮氨酸和缬氨酸; 甘氨酸和丙氨酸; 天冬酰胺和谷氨酰胺; 丝氨 酸和苏氨酸; 苯丙氨酸和酪氨酸。 "Similarity" refers to the degree to which the amino acid residues at the corresponding positions are replaced by the same or conservative substitutions in the alignment between amino acid sequences. Amino acids used for conservative substitutions, for example, negatively charged amino acids may include aspartic acid and glutamic acid; positively charged amino acids may include lysine and arginine; having an uncharged head group is Similar hydrophilic amino acids may include leucine, isoleucine and valine; glycine and alanine; asparagine and glutamine; serine and threonine; phenylalanine and tyrosine.
"反义" 是指与特定的 DNA或 RNA序列互补的核苷酸序列。 "反义链" 是指与 "有义链'' 互补的核酸链。 "Antisense" refers to a nucleotide sequence that is complementary to a particular DNA or RNA sequence. "Antisense strand" refers to a nucleic acid strand that is complementary to a "sense strand."
"衍生物" 是指 HFP或编码其的核酸的化学修饰物。 这种化学修饰物可以是用烷基、 酰基或氨基替换氢原子。 核酸衍生物可编码保留天然分子的主要生物学特性的多肽。 "Derivative" refers to a chemical modification of HFP or a nucleic acid encoding it. This chemical modification may be the replacement of a hydrogen atom with an alkyl, acyl or amino group. Nucleic acid derivatives can encode polypeptides that retain the main biological properties of natural molecules.
"抗体" 是指完整的抗体分子及其片段, 如 Fa、 卩(^') 2及1^ , 其能特异性结合人含 ATP/GTP结合结构域的核转换蛋白 10的抗原决定簇。 "Antibody" refers to a complete antibody molecule and its fragments, such as Fa, 卩 (^ ') 2 and 1 ^, which can specifically bind human Antigenic determinants of ATP / GTP binding domain of nuclear conversion protein 10.
"人源化抗体" 是指非抗原结合区域的氨基酸序列被替换变得与人抗体更为相似, 但仍 保留原始结合活性的抗体。 A "humanized antibody" refers to an antibody in which the amino acid sequence of a non-antigen binding region is replaced to become more similar to a human antibody, but still retains the original binding activity.
"分离的" 一词指将物质从它原来的环境 (例如, 若是自然产生的就指其天然环境) 之 中移出。 比如说, 一个自然产生的多核苷酸或多肽存在于活动物中就是没有被分离出来, 但同样的多核苷酸或多肽同一些或全部在自然系统中与之共存的物质分开就是分离的。 这样的多核苷酸可能是某一载体的一部分, 也可能这样的多核苷酸或多肽是某一组合物 的一部分。 既然载体或组合物不是它天然环境的成分, 它们仍然是分离的。 The term "isolated" refers to the removal of a substance from its original environment (for example, its natural environment if it occurs naturally). For example, a naturally occurring polynucleotide or polypeptide is not isolated when it is present in a living animal, but the same polynucleotide or polypeptide is separated from some or all of the substances that coexist with it in the natural system. Such a polynucleotide may be part of a vector, or such a polynucleotide or polypeptide may be part of a composition. Since the carrier or composition is not a component of its natural environment, they are still isolated.
如本发明所用, "分离的" 是指物质从其原始环境中分离出来 (如果是天然的物质, 原始环境即是天然环境)。 如活体细胞内的天然状态下的多聚核苷酸和多肽是没有分离纯 化的, 但同样的多聚核苷酸或多肽如从天然状态中同存在的其他物质中分开, 则为分离 纯化的。 As used herein, "isolated" refers to the separation of a substance from its original environment (if it is a natural substance, the original environment is the natural environment). For example, polynucleotides and polypeptides in a natural state in a living cell are not isolated and purified, but the same polynucleotides or polypeptides are separated and purified if they are separated from other substances existing in the natural state. .
如本文所用, "分离的人含 ATP/GTP 结合结构域的核转换蛋白 1 0 " 是指人含 ATP/GTP结合结构域的核转换蛋白 1 0基本上不含天然与其相关的其它蛋白、 脂类、 糖 类或其它物质。 本领域的技术人员能用标准的蛋白质纯化技术纯化人含 ATP/GTP 结合 结构域的核转换蛋白 1 0。 基本上纯的多肽在非还原聚丙烯酰胺凝胶上能产生单一的主 带。 人含 ATP/GTP结合结构域的核转换蛋白 1 0多肽的纯度能用氨基酸序列分析。 As used herein, "isolated human ATP / GTP binding domain-containing nuclear conversion protein 1 0" refers to human ATP / GTP binding domain-containing nuclear conversion protein 1 0 that is substantially free of other proteins and lipids naturally associated with it. Class, sugar or other substance. Those skilled in the art can purify human ATP / GTP binding domain-containing nuclear conversion proteins 10 using standard protein purification techniques. Substantially pure polypeptides can produce a single main band on a non-reducing polyacrylamide gel. The purity of the human ATP / GTP binding domain-containing nucleoprotein 10 peptide can be analyzed by amino acid sequence.
本发明提供了一种新的多肽一一人含 ATP/GTP结合结构域的核转换蛋白 1 0 , 其基本 上是由 SEQ I D N0: 2所示的氨基酸序列组成的。 本发明的多肽可以是重组多肽、 天然多肽、 合成多肽, 优选重组多肽。 本发明的多肽可以是天然纯化的产物, 或是化学合成的产物, 或使用重组技术从原核或真核宿主(例如, 细菌、 酵母、 高等植物、 昆虫和哺乳动物细胞) 中产生。 根据重组生产方案所用的宿主, 本发明的多肽可以是糖基化的, 或可以是非糖 基化的。 本发明的多肽还可包括或不包括起始的甲硫氨酸残基。 The present invention provides a novel polypeptide-to-human nuclear conversion protein 10 containing an ATP / GTP binding domain, which basically consists of the amino acid sequence shown in SEQ ID D N0: 2. The polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide, and preferably a recombinant polypeptide. The polypeptides of the present invention can be naturally purified products or chemically synthesized products, or can be produced from prokaryotic or eukaryotic hosts (eg, bacteria, yeast, higher plants, insects, and mammalian cells) using recombinant techniques. Depending on the host used in the recombinant production protocol, the polypeptide of the invention may be glycosylated, or it may be non-glycosylated. Polypeptides of the invention may also include or exclude starting methionine residues.
本发明还包括人含 ATP/GTP 结合结构域的核转换蛋白 10 的片段、 衍生物和类似物。 如 本发明所用, 术语 "片段"、 "衍生物"和 "类似物"是指基本上保持本发明的人含 ATP/GTP 结合结构域的核转换蛋白 10 相同的生物学功能或活性的多肽。 本发明多肽的片段、 衍生 物或类似物可以是: ( I ) 这样一种, 其中一个或多个氨基酸残基被保守或非保守氨基酸 残基 (优选的是保守氨基酸残基)取代, 并且取代的氨基酸可以是也可以不是由遗传密 码子编码的; 或者 ( I I ) 这样一种, 其中一个或多个氨基酸残基上的某个基团被其它基 团取代包含取代基; 或者 ( I I I ) 这样一种, 其中成熟多肽与另一种化合物 (比如延长多 肽半衰期的化合物, 例如聚乙二醇) 融合; 或者 ( IV )这样一种, 其中附加的氨基酸序 列融合进成熟多肽而形成的多肽序列 (如前导序列或分泌序列或用来纯化此多肽的序列 或蛋白原序列) 通过本文的阐述, 这样的片段、 衍生物和类似物被认为在本领域技术人 员的知识范围之内。 The present invention also includes fragments, derivatives, and analogs of human ATP / GTP binding domain-containing nuclear conversion protein 10. As used herein, the terms "fragment", "derivative" and "analog" refer to a polypeptide that substantially maintains the same biological function or activity of the human ATP / GTP binding domain-containing nuclear conversion protein 10 of the present invention. A fragment, derivative or analog of the polypeptide of the present invention may be: (I) a kind in which one or more amino acid residues are replaced with conservative or non-conservative amino acid residues (preferably conservative amino acid residues), and the substitution The amino acid may or may not be encoded by the genetic code; or (II) such a type in which a group on one or more amino acid residues is substituted by other groups to include a substituent; or (III) such One in which the mature peptide is in combination with another compound (such as A peptide half-life compound, such as polyethylene glycol), or (IV) a polypeptide sequence (such as a leader sequence or a secreted sequence or a sequence used to purify the polypeptide) in which an additional amino acid sequence is fused into a mature polypeptide (Or proteomic sequences) As set forth herein, such fragments, derivatives and analogs are considered to be within the knowledge of those skilled in the art.
本发明提供了分离的核酸 (多核苷酸), 基本由编码具有 SEQ ID NO: 2 氨基酸序列的多 肽的多核苷酸组成。 本发明的多核苷酸序列包括 SEQ ID N0: 1 的核苷酸序列。 本发明的 多核苷酸是从人胎脑组织的 cDNA 文库中发现的。 它包含的多核苷酸序列全长为 579 个碱 基, 其开放读框 ( 206-469 )编码了 87 个氨基酸。 此多肽具有核转换蛋白及 ATP/GTP 结 合结构域的特征序列, 可推断出该人含 ATP/GTP结合结构域的核转换蛋白 10具有核转换 蛋白所代表的结构和功能。 The present invention provides an isolated nucleic acid (polynucleotide), which basically consists of a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID NO: 2. The polynucleotide sequence of the present invention includes the nucleotide sequence of SEQ ID NO: 1. The polynucleotide of the present invention is found from a cDNA library of human fetal brain tissue. It contains a polynucleotide sequence with a total length of 579 bases, and its open reading frame (206-469) encodes 87 amino acids. This polypeptide has a characteristic sequence of a nuclear conversion protein and an ATP / GTP binding domain. It can be deduced that the human nuclear conversion protein 10 containing an ATP / GTP binding domain has the structure and function represented by the nuclear conversion protein.
本发明的多核苷酸可以是 DNA形式或是 RNA形式。 DNA形式包括 cDNA、 基因组 DNA或 人工合成的 DNA。 DNA 可以是单链的或是双链的。 MA 可以是编码链或非编码链。 编码成 熟多肽的编码区序列可以与 SEQ ID N0: 1 所示的编码区序列相同或者是简并的变异体。 如本发明所用, "简并的变异体" 在本发明中是指编码具有 SEQ ID NO: 2的蛋白质或多肽, 但与 SEQ ID NO: 1所示的编码区序列有差别的核酸序列。 The polynucleotide of the present invention may be in the form of DNA or RNA. DNA forms include cDNA, genomic DNA, or synthetic DNA. DNA can be single-stranded or double-stranded. MA can be coded or non-coded. The coding region sequence encoding the mature polypeptide may be the same as the coding region sequence shown in SEQ ID NO: 1 or a degenerate variant. As used herein, a "degenerate variant" refers to a nucleic acid sequence encoding a protein or polypeptide having SEQ ID NO: 2 but different from the coding region sequence shown in SEQ ID NO: 1 in the present invention.
编码 SEQ ID NO: 2 的成熟多肽的多核苷酸包括: 只有成熟多肽的编码序列; 成熟多 肽的编码序列和各种附加编码序列; 成熟多肽的编码序列 (和任选的附加编码序列) 以 及非编码序列。 The polynucleotide encoding the mature polypeptide of SEQ ID NO: 2 includes: only the coding sequence of the mature polypeptide; the coding sequence of the mature polypeptide and various additional coding sequences; the coding sequence of the mature polypeptide (and optional additional coding sequences); Coding sequence.
术语 "编码多肽的多核苷酸" 是指包括编码此多肽的多核苷酸和包括附加编码和 /或 非编码序列的多核苷酸。 The term "polynucleotide encoding a polypeptide" refers to a polynucleotide comprising the polypeptide and a polynucleotide comprising additional coding and / or non-coding sequences.
本发明还涉及上述描述多核苷酸的变异体, 其编码与本发明有相同的氨基酸序列的 多肽或多肽的片断、 类似物和衍生物。 此多核苷酸的变异体可以是天然发生的等位变异 体或非天然发生的变异体。 这些核苷酸变异体包括取代变异体、 缺失变异体和插入变异 体。 如本领域所知的, 等位变异体是一个多核苷酸的替换形式, 它可能是一个或多个核 苷酸的取代、 缺失或插入, 但不会从实质上改变其编码的多肽的功能。 The invention also relates to variants of the polynucleotides described above, which encode polypeptides or fragments, analogs and derivatives of polypeptides having the same amino acid sequence as the invention. Variants of this polynucleotide can be naturally occurring allelic variants or non-naturally occurring variants. These nucleotide variants include substitution variants, deletion variants, and insertion variants. As known in the art, an allelic variant is an alternative form of a polynucleotide that may be a substitution, deletion, or insertion of one or more nucleotides, but does not substantially change the function of the polypeptide it encodes .
本发明还涉及与以上所描述的序列杂交的多核苷酸 (两个序列之间具有至少 50% , 优选具有 70%的相同性)。 本发明特别涉及在严格条件下与本发明所述多核苷酸可杂交的 多核苷酸。 在本发明中, "严格条件" 是指: (1)在较低离子强度和较高温度下的杂交和 洗脱, 如 0. 2xSSC, 0. 1%SDS, 60。C ;或(2)杂交时加用变性剂, 如 50% (v/v)甲酰胺, 0. 1 % 小牛血清 / 0. l»/»F i co l l , 42 "C等; 或(3)仅在两条序列之间的相同性至少在 95%以丄, 是 97%以上时才发生杂交。 并且, 可杂交的多核苷酸编码的多肽与 SEQ ID NO: 2 所示的 成熟多肽有相同的生物学功能和活性。 The invention also relates to a polynucleotide that hybridizes to the sequence described above (having at least 50%, preferably 70% identity between the two sequences). The invention particularly relates to polynucleotides that can hybridize to the polynucleotides of the invention under stringent conditions. In the present invention, "strict conditions" means: (1) hybridization and elution at lower ionic strength and higher temperature, such as 0.2xSSC, 0.1% SDS, 60. C; or (2) adding a denaturant during hybridization, such as 50% (v / v) formamide, 0.1% calf serum / 0.1 »/» F i co ll, 42 "C, etc .; or ( 3) Only the identity between the two sequences is at least 95%, Hybridization occurs only when it is above 97%. In addition, the polypeptide encoded by the hybridizable polynucleotide has the same biological function and activity as the mature polypeptide shown in SEQ ID NO: 2.
本发明还涉及与以上所描述的序列杂交的核酸片段。 如本发明所用, "核酸片段"的 长度至少含 10个核苷酸, 较好是至少 20-30个核苷酸, 更好是至少 50-60个核苷酸, 最 好是至少 100 个核苷酸以上。 核酸片段也可用于核酸的扩增技术(如 PCR)以确定和 /或分 离编码人含 ATP/GTP结合结构域的核转换蛋白 10的多核苷酸。 The invention also relates to nucleic acid fragments that hybridize to the sequences described above. As used in the present invention, a "nucleic acid fragment" contains at least 10 nucleotides in length, preferably at least 20-30 nucleotides, more preferably at least 50-60 nucleotides, and most preferably at least 100 cores. Glycylic acid or more. Nucleic acid fragments can also be used in nucleic acid amplification techniques, such as PCR, to identify and / or isolate polynucleotides encoding human ATP / GTP binding domain-containing nucleoprotein 10.
本发明中的多肽和多核苷酸优选以分离的形式提供, 更佳地被纯化至均质。 The polypeptides and polynucleotides in the present invention are preferably provided in an isolated form and are more preferably purified to homogeneity.
本发明的编码人含 ATP/GTP 结合结构域的核转换蛋白 10 的特异的多核苷酸序列 能用多种方法获得。 例如, 用本领域熟知的杂交技术分离多核苷酸。 这些技术包括但 不局限于: 1)用探针与基因组或 cDNA 文库杂交以检出同源的多核苷酸序列, 和 2)表 达文库的抗体筛选以检出具有共同结构特征的克隆的多核苷酸片段。 The specific polynucleotide sequence of the present invention encoding human ATP / GTP binding domain-containing nuclear conversion protein 10 can be obtained by various methods. For example, polynucleotides are isolated using hybridization techniques well known in the art. These techniques include, but are not limited to: 1) hybridization of probes to genomic or cDNA libraries to detect homologous polynucleotide sequences, and 2) antibody screening of expression libraries to detect cloned polynucleosides with common structural characteristics Acid fragments.
本发明的 DNA片段序列也能用下列方法获得: 1)从基因组 DNA分离双链 DNA序列: 2)化学合成 DN A序列以获得所述多肽的双链 DM。 The DNA fragment sequence of the present invention can also be obtained by the following methods: 1) Isolating a double-stranded DNA sequence from genomic DNA: 2) Chemically synthesizing a DNA sequence to obtain the double-stranded DM of the polypeptide.
上述提到的方法中, 分离基因组 DNA最不常用。 DNA序列的直接化学合成是经常 选用的方法。 更经常选用的方法是 cDNA序列的分离。 分离感兴趣的 cDNA 的标准方法 是从高表达该基因的供体细胞分离 mRNA并进行逆转录, 形成质粒或噬菌体 cDNA文库。 提取 mRNA 的方法已有多种成熟的技术, 试剂盒也可从商业途径获得(Qiagene)。 而构 建 cDNA文库也是通常的方法(Sambrook, et al. , Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory. New York, 1989)。 还可得到商业供应的 cDNA文库, 如 Clontech公司的不同 cDNA文库。 当结合使用聚合酶反应技术时, 即使 极少的表达产物也能克隆。 Of the methods mentioned above, genomic DNA isolation is the least commonly used. Direct chemical synthesis of DNA sequences is often the method of choice. The more commonly used method is the isolation of cDNA sequences. The standard method for isolating the cDNA of interest is to isolate mRNA from donor cells that overexpress the gene and perform reverse transcription to form a plasmid or phage cDNA library. There are many mature techniques for mRNA extraction, and kits are also commercially available (Qiagene). Construction of cDNA libraries is also a common method (Sambrook, et al., Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory. New York, 1989). Commercially available cDNA libraries are also available, such as different cDNA libraries from Clontech. When combined with polymerase reaction technology, even very few expression products can be cloned.
可用常规方法从这些 cDNA文库中筛选本发明的基因。 这些方法包括(但不限于): (DDNA-D A或 DNA-RNA杂交; (2)标志基因功能的出现或丧失; (3)测定人含 ATP/GTP 结合结构域的核转换蛋白 10的转录本的水平; (4)通过免疫学技术或测定生物学活性, 来检测基因表达的蛋白产物 上述方法可单用, 也可多种方法联合应用。 The genes of the present invention can be selected from these cDNA libraries by conventional methods. These methods include (but are not limited to): (DDNA-DA or DNA-RNA hybridization; (2) the presence or absence of a marker gene function; (3) determination of human ATP / GTP binding domain-containing nuclear transfer protein 10 transcription The current level; (4) Detecting the protein product of gene expression by immunological techniques or measuring biological activity. The above method can be used alone or in combination.
在第(1)种方法中, 杂交所用的探针是与本发明的多核苷酸的任何一部分同源, 其长度至少 10个核苷酸, 较好是至少 30个核苷酸, 更好是至少 50 个核苷酸, 最好 是至少 100 个核苷酸。 此外, 探针的长度通常在 2000个核苷酸之内, 较佳的为 1000 个核苷酸之内 . 此处所用的探针通常是在本发明的基因序列信息的基础上化学合成的 ΠΝΑ 序列。 本发明的基因本身或者片段当然可以用作探针。 DNA 探针的标记可用放射 性同位素, 荧光素或酶(如碱性磷酸酶)等。 In the method (1), the probe used for hybridization is homologous to any part of the polynucleotide of the present invention, and its length is at least 10 nucleotides, preferably at least 30 nucleotides, more preferably At least 50 nucleotides, preferably at least 100 nucleotides. In addition, the length of the probe is usually within 2,000 nucleotides, preferably within 1000 nucleotides. The probes used here are usually chemically synthesized based on the gene sequence information of the present invention. sequence. The genes or fragments of the present invention can of course be used as probes. DNA probes are labeled with radiation Sexual isotopes, luciferin or enzymes (such as alkaline phosphatase).
在第(4)种方法中, 检测人含 ATP/GTP结合结构域的核转换蛋白 10基因表达的蛋 白产物可用免疫学技术如 Western印迹法, 放射免疫沉淀法, 酶联免疫吸附法(ELISA) 等。 In the (4) method, the protein product of the human ATP / GTP binding domain-containing nuclear conversion protein 10 gene expression can be detected using immunological techniques such as Western blotting, radioimmunoprecipitation, and enzyme-linked immunosorbent assay (ELISA). Wait.
应用 PCR技术扩增 DNA/RNA的方法 (Saiki, et al. Science 1985; 230: 1350-1354) 被优选用于获得本发明的基因。 特别是很难从文库中得到全长的 cDNA 时, 可优选使 用 RACE 法(RACE - cDNA 末端快速扩增法), 用于 PCR 的引物可根据本文所公开的本发 明的多核苷酸序列信息适当地选择, 并可用常规方法合成。 可用常规方法如通过凝胶 电泳分离和纯化扩增的 DNA/RNA片段。 A method of amplifying DNA / RNA by PCR (Saiki, et al. Science 1985; 230: 1350-1354) is preferably used to obtain the gene of the present invention. In particular, when it is difficult to obtain a full-length cDNA from a library, the RACE method (RACE-rapid amplification of cDNA ends) may be preferably used. The primers used for PCR may be appropriately based on the polynucleotide sequence information of the present invention disclosed herein. Select and synthesize using conventional methods. The amplified DNA / RNA fragments can be separated and purified by conventional methods such as by gel electrophoresis.
如上所述得到的本发明的基因, 或者各种 DNA片段等的多核苷酸序列可用常规方 法如双脱氧链终止法(Sanger et al. PNAS, 1977, 74: 5463-5467)测定。 这类多核 苷酸序列测定也可用商业测序试剂盒等。 为了获得全长的 cDNA 序列, 测序需反复进 行。 有时需要测定多个克隆的 cDNA序列, 才能拼接成全长的 cDNA序列。 The polynucleotide sequence of the gene of the present invention or various DNA fragments and the like obtained as described above can be determined by a conventional method such as dideoxy chain termination method (Sanger et al. PNAS, 1977, 74: 5463-5467). Such polynucleotide sequencing can also be performed using commercial sequencing kits and the like. In order to obtain the full-length cDNA sequence, sequencing must be repeated. Sometimes it is necessary to determine the cDNA sequence of multiple clones in order to splice into a full-length cDNA sequence.
本发明也涉及包含本发明的多核苷酸的载体, 以及用本发明的载体或直接用人含 ATP/GTP结合结构域的核转换蛋白 10编码序列经基因工程产生的宿主细胞, 以及经重 组技术产生本发明所述多肽的方法。 The present invention also relates to a vector comprising the polynucleotide of the present invention, and a host cell produced by genetic engineering using the vector of the present invention or directly using a human ATP / GTP binding domain-containing nuclear conversion protein 10 coding sequence, and produced by recombinant technology A method of a polypeptide according to the invention.
本发明中, 编码人含 ATP/GTP 结合结构域的核转换蛋白 10 的多核苷酸序列可插 入到载体中, 以构成含有本发明所述多核苷酸的重组载体。 术语 "载体" 指本领域熟 知的细菌质粒、 噬菌体、 酵母质粒、 植物细胞病毒、 哺乳动物细胞病毒如腺病毒、 逆 转录病毒或其它载体。 在本发明中适用的载体包括但不限于: 在细菌中表达的基于 T7 启动子的表达载体(Rosenberg, et al. Gene, 1987, 56: 125); 在哺乳动物细胞中表 达的 MSXND 表达载体(Lee and Nathans, J Bio Chem. 263: 3521, 1988)和在昆虫细 胞中表达的来源于杆状病毒的载体。 总之, 只要能在宿主体内复制和稳定, 任何质粒 和载体都可以用于构建重组表达载体。 表达载体的一个重要特征是通常含有复制起始 点、 启动子、 标记基因和翻译调控元件。 In the present invention, a polynucleotide sequence encoding a human ATP / GTP binding domain-containing nuclear conversion protein 10 can be inserted into a vector to constitute a recombinant vector containing the polynucleotide of the present invention. The term "vector" refers to bacterial plasmids, bacteriophages, yeast plasmids, plant cell viruses, mammalian cell viruses such as adenoviruses, retroviruses, or other vectors known in the art. Vectors suitable for use in the present invention include, but are not limited to: T7 promoter-based expression vectors (Rosenberg, et al. Gene, 1987, 56: 125) expressed in bacteria; MSXND expression vectors expressed in mammalian cells ( Lee and Nathans, J Bio Chem. 263: 3521, 1988) and baculovirus-derived vectors expressed in insect cells. In short, as long as it can be replicated and stabilized in a host, any plasmid and vector can be used to construct a recombinant expression vector. An important feature of expression vectors is that they usually contain an origin of replication, a promoter, a marker gene, and translational regulatory elements.
本领域的技术人员熟知的方法能用于构建含编码人含 ATP/GTP结合结构域的核转 换蛋白 10 的 MA序列和合适的转录 /翻译调控元件的表达载体。 这些方法包括体外重 组 DNA技术、 DNA合成技术、 体内重组技术等(Sambroook, et al. Molecular Cloning, a Laboratory Manual, cold Spring Harbor Laboratory. New York, 1989)。 所述 的 DNA 序列可有效连接到表达载体中的适当启动子上, 以指导 mRNA 合成。 这些启动 子的代表性例子有: 大肠杆菌的 l ac或 trp启动子; λ噬菌体的 PL启动子; 真核启 动子包括 CMV立即早期启动子、 HSV胸苷激酶启动子、 早期和晚期 SV40启动子、 反转 录病毒的 LTRs 和其它一些已知的可控制基因在原核细胞或真核细胞或其病毒中表达 的启动子。 表达载体还包括翻译起始用的核糖体结合位点和转录终止子等。 在载体中 插入增强子序列将会使其在高等真核细胞中的转录得到增强。 增强子是 DNA 表达的顺 式作用因子, 通常大约有 10 到 300 个碱基对, 作用于启动子以增强基因的转录。 可 举的例子包括在复制起始点晚期一侧的 1 00到 270个碱基对的 SV40增强子、 在复制 起始点晚期一侧的多瘤增强子以及腺病毒增强子等。 Methods well known to those skilled in the art can be used to construct expression vectors containing MA sequences encoding human ATP / GTP binding domain-containing nuclear transfer protein 10 and suitable transcription / translation regulatory elements. These methods include in vitro recombinant DNA technology, DNA synthesis technology, and in vivo recombination technology (Sambroook, et al. Molecular Cloning, a Laboratory Manual, cold Spring Harbor Laboratory. New York, 1989). The DNA sequence can be operably linked to an appropriate promoter in an expression vector to guide mRNA synthesis. These start Representative examples of promoters are: l ac or trp promoter of E. coli; PL promoter of lambda phage; eukaryotic promoters include CMV immediate early promoter, HSV thymidine kinase promoter, early and late SV40 promoter, anti LTRs that transcribe viruses and other known promoters that control the expression of genes in prokaryotic or eukaryotic cells or their viruses. The expression vector also includes a ribosome binding site and a transcription terminator for translation initiation. Insertion of enhancer sequences into the vector will enhance its transcription in higher eukaryotic cells. Enhancers are cis-acting factors for DNA expression, usually about 10 to 300 base pairs, which act on promoters to enhance gene transcription. Examples include 100 to 270 base pair SV40 enhancers on the late side of the origin of replication, polyoma enhancers and adenovirus enhancers on the late side of the origin of replication.
此外, 表达载体优选地包含一个或多个选择性标记基因, 以提供用于选择转化的 宿主细胞的表型性状, 如真核细胞培养用的二氢叶酸还原酶、 新霉素抗性以及绿色荧 光蛋白(GFP) , 或用于大肠杆菌的四环素或氨苄青霉素抗性等。 In addition, the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase, neomycin resistance, and green for eukaryotic cell culture. Fluorescent protein (GFP), or tetracycline or ampicillin resistance for E. coli.
本领域一般技术人员都清楚如何选择适当的载体 /转录调控元件 (如启动子、 增 强子等) 和选择性标记基因。 Those of ordinary skill in the art will know how to select appropriate vector / transcription regulatory elements (such as promoters, enhancers, etc.) and selectable marker genes.
本发明中, 编码人含 ATP/GTP 结合结构域的核转换蛋白 10 的多核苷酸或含有该 多核苷酸的重组载体可转化或转导入宿主细胞, 以构成含有该多核苷酸或重组载体的 基因工程化宿主细胞。 术语 "宿主细胞" 指原核细胞, 如细菌细胞; 或是低等真核细 胞, 如酵母细胞; 或是高等真核细胞, 如哺乳动物细胞。 代表性例子有: 大肠杆菌, 链霉菌属; 细菌细胞如鼠伤寒沙门氏菌; 真菌细胞如酵母; 植物细胞; 昆虫细胞如果 蝇 S2或 Sf 9 ; 动物细胞如 CH0、 COS或 Bowes黑素瘤细胞等。 In the present invention, a polynucleotide encoding a human ATP / GTP binding domain-containing nuclear conversion protein 10 or a recombinant vector containing the polynucleotide can be transformed or transduced into a host cell to constitute a polynucleotide containing the polynucleotide or the recombinant vector. Genetically engineered host cells. The term "host cell" refers to a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a mammalian cell. Representative examples are: Escherichia coli, Streptomyces; bacterial cells such as Salmonella typhimurium; fungal cells such as yeast; plant cells; insect cells such as fly S2 or Sf 9; animal cells such as CH0, COS or Bowes melanoma cells.
用本发明所述的 DNA序列或含有所述 DNA序列的重组载体转化宿主细胞可用本领 域技术人员熟知的常规技术进行。 当宿主为原核生物如大肠杆菌时, 能吸收 DNA 的感 受态细胞可在指数生长期后收获, 用 CaCl2法处理, 所用的步骤在本领域众所周知。 可供选择的是用 MgCl2。 如果需要, 转化也可用电穿孔的方法进行。 当宿主是真核生 物, 可选用如下的 DNA 转染方法: 磷酸钙共沉淀法, 或者常规机械方法如显微注射、 电穿孔、 脂质体包装等。 Transformation of a host cell with a DNA sequence described in the present invention or a recombinant vector containing the DNA sequence can be performed using conventional techniques well known to those skilled in the art. When the host is a prokaryote, such as E. coli, competent cells capable of absorbing DNA can be harvested after the exponential growth phase and treated with the CaCl 2 method. The steps used are well known in the art. Alternatively, MgCl 2 is used. If necessary, transformation can also be performed by electroporation. When the host is a eukaryotic organism, the following DNA transfection methods can be used: calcium phosphate co-precipitation method, or conventional mechanical methods such as microinjection, electroporation, and liposome packaging.
通过常规的重组 DNA技术, 利用本发明的多核苷酸序列可用来表达或生产重组的 人含 ATP/GTP结合结构域的核转换蛋白 10 (Sc i ence , 1984; 224: 1431)。 一般来说有 以下步骤: The polynucleotide sequence of the present invention can be used to express or produce recombinant human ATP / GTP binding domain-containing nuclear conversion protein 10 by conventional recombinant DNA technology (Scence, 1984; 224: 1431). Generally there are the following steps:
( 1) .用本发明的编码人 人含 ATP/GTP结合结构域的核转换蛋白 10的多核苷酸(或 变异体), 或用含有该多核苷酸的重组表达载体转化或转导合适的宿主细胞: (2) .在合适的培养基中培养宿主细胞; (1) A polynucleotide (or variant) encoding a human-human ATP / GTP binding domain-containing nuclear conversion protein 10 of the present invention, or a recombinant expression vector containing the polynucleotide for transformation or transduction Host cell: (2) culturing host cells in a suitable medium;
(3) .从培养基或细胞中分离、 纯化蛋白质。 (3) Isolate and purify protein from culture medium or cells.
在步骤 (2 ) 中, 根据所用的宿主细胞, 培养中所用的培养基可选自各种常规培 养基。 在适于宿主细胞生长的条件下进行培养。 当宿主细胞生长到适当的细胞密度后, 用合适的方法(如温度转换或化学诱导)诱导选择的启动子, 将细胞再培养一段时间。 In step (2), depending on the host cell used, the medium used in the culture may be selected from various conventional media. Culture is performed under conditions suitable for host cell growth. After the host cells have grown to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
在步骤 ( 3 ) 中, 重组多肽可包被于细胞内、 或在细胞膜上表达、 或分泌到细胞 外。 如果需要, 可利用其物理的、 化学的和其它特性通过各种分离方法分离和纯化重 组的蛋白。 这些方法是本领域技术人员所熟知的。 这些方法包括但并不限于: 常规的 复性处理、 蛋白沉淀剂处理(盐析方法)、 离心、 渗透破菌、 超声波处理、 超离心、 分 子筛层析(凝胶过滤)、 吸附层析、 离子交换层析、 高效液相层析(HPLC)和其它各种液 相层析技术及这些方法的结合。 附图的简要说明 In step (3), the recombinant polypeptide may be coated in a cell, expressed on a cell membrane, or secreted outside the cell. If necessary, the physical, chemical, and other properties can be used to separate and purify the recombinant protein by various separation methods. These methods are well known to those skilled in the art. These methods include, but are not limited to: conventional renaturation treatment, protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion Exchange chromatography, high performance liquid chromatography (HPLC) and various other liquid chromatography techniques and combinations of these methods. Brief description of the drawings
下列附图用于说明本发明的具体实施方案, 而不用于限定由权利要求书所界定 的本发明范围。 The following drawings are used to illustrate specific embodiments of the invention, but not to limit the scope of the invention as defined by the claims.
图 1是本发明人含 ATP/GTP结合结构域的核转换蛋白 10在^ W共有 47个氨基酸和 核转换蛋白结构域的氨基酸序列同源性比较图。 上方序列是人含 ATP/GTP结合结构域 的核转换蛋白 10, 下方序列是核转换蛋白结构域。 Ί" 和 ": " 表示在两个序列 间同一位置不同氨基酸出现的概率依次减小。 FIG. 1 is a comparison diagram of the amino acid sequence homology of the nuclear transfer protein 10 containing the ATP / GTP binding domain of the present inventor with 47 amino acids in total and the nuclear transfer protein domain. The upper sequence is a human nuclear transfer protein 10 containing an ATP / GTP binding domain, and the lower sequence is a nuclear transfer protein domain. Ί "and": "indicate that the probability of different amino acids appearing at the same position between the two sequences decreases in sequence.
图 1为分离的人含 ATP/GTP结合结构域的核转换蛋白 10的聚丙烯酰胺凝胶电泳图 ( SDS-PAGE )„ lOkDa为蛋白质的分子量。 箭头所指为分离出的蛋白条带。 实现本发明的最佳方式 FIG. 1 is a polyacrylamide gel electrophoresis image (SDS-PAGE) of an isolated human ATP / GTP binding domain-containing nuclear conversion protein 10 (SDS-PAGE). LOkDa is the molecular weight of the protein. The arrow indicates the isolated protein band. Realization Best Mode of the Invention
下面结合具体实施例, 进一步阐述本发明。 应理解, 这些实施例仅用于说明本发明 而不用于限制本发明的范围。 下列实施例中未注明具体条件的实验方法, 通常按照常规 条件如 Sambrook等人, 分子克隆: 实验室手册(New York: Cold Spring Harbor Laboratory Press, 1989)中所述的条件, 或按照制造厂商所建议的条件。 The present invention is further described below with reference to specific embodiments. It should be understood that these examples are only used to illustrate the present invention and not to limit the scope of the present invention. In the following examples, the experimental methods without specific conditions are usually performed according to conventional conditions, such as Sambrook et al., Molecular Cloning: Laboratory Manual (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the manufacturer Suggested conditions.
实施例 1: 人含 ATP/GTP结合结构域的核转换蛋白 10的克隆 Example 1: Cloning of human ATP / GTP binding domain-containing nuclear transfer protein 10
用异硫氰酸胍 /酚 /氯仿一步法提取人胎脑总 RNA。 用 Quik raRNA Isolation Kit (Qiegene公司产品)从总 RNA中分离 poly (A) raRNA 0 2ug poly (A) mRNA经逆转录形成 cDNA。 用 Smart cDNA克隆试剂盒 (购自 Clontech)将 cDNA片段定向插入到 pBSK (+)载体(Clontech 公司产品)的多克隆位点上, 转化 DH5cc, 细菌形成 cDNA文库。 用 Dye terminate cycle reaction sequencing kit (Perkin— Elmer公司产品) 和 ABI 377自动测序仪(Perkin- Elmer 公司)测定所有克隆的 5'和 3'末端的序列。 将测定的 cDNA序列与已有的公共 DNA序列数据 库 (Genebank) 进行比较, 结果发现其中一个克隆 0623F07的 cDNA序列为新的 DNA。 通过 合成一系列引物对该克隆所含的插入 cDNA片段进行双向测定。 结果表明, 0623F07克隆所 含的全长 cDNA为 579bp (如 Seq ID N0: 1所示) , 从第 206bp至 469bp有一个 264bp的开放阅 读框架 (0RF) , 编码一个新的蛋白质 (如 Seq ID NO: 2所示) 。 我们将此克隆命名为 PBS-0623F07, 编码的蛋白质命名为人含 ATP/GTP结合结构域的核转换蛋白 10。 Total human fetal brain RNA was extracted by one-step method with guanidine isothiocyanate / phenol / chloroform. Poly (A) raRNA 0 2ug poly (A) mRNA was isolated from total RNA using Quik raRNA Isolation Kit (Qiegene) to form cDNA by reverse transcription. The Smart cDNA cloning kit (purchased from Clontech) was used to insert the cDNA fragment into the multicloning site of pBSK (+) vector (Clontech) to transform DH5cc to form a cDNA library. Dye terminate cycle reaction sequencing kit (Perkin-Elmer) and ABI 377 automatic sequencer (Perkin-Elmer) were used to determine the sequences at the 5 'and 3' ends of all clones. The determined cDNA sequence was compared with the existing public DNA sequence database (Genebank), and it was found that the cDNA sequence of one clone 0623F07 was new DNA. A series of primers were synthesized to determine the inserted cDNA fragments of the clone in both directions. The results show that the full-length cDNA of clone 0623F07 is 579bp (as shown in Seq ID N0: 1), and there is a 264bp open reading frame (0RF) from 206bp to 469bp, which encodes a new protein (such as Seq ID NO : Shown in 2). We named this clone PBS-0623F07, and the encoded protein was named human ATP / GTP binding domain-containing nuclear conversion protein 10.
实施例 2: 用 RT-PCR方法克隆编码人含 ATP/GTP结合结构域的核转换蛋白 10的基因 用胎脑细胞总 RNA为模板,以 oligo-dT为引物进行逆转录反应合成 cDNA,用 Qiagene的 试剂盒纯化后,用下列引物进行 PCR扩增: Example 2: Cloning of the gene encoding human ATP / GTP binding domain-containing nuclear transfer protein 10 by RT-PCR method. Using fetal brain cell total RNA as a template and oligo-dT as a primer for reverse transcription reaction to synthesize cDNA. Qiagene After purification of the kit, PCR amplification was performed with the following primers:
Priraerl: 5'-ACGGCTGCGAGAAGACGAAGCTTAG-3' (SEQ ID NO: 3) Priraerl: 5'-ACGGCTGCGAGAAGACGAAGCTTAG-3 '(SEQ ID NO: 3)
Primer2: 5'- TCATTCAACAAATGTTTATTAATAG- 3, (SEQ ID NO: 4) Primer2: 5'- TCATTCAACAAATGTTTATTAATAG- 3, (SEQ ID NO: 4)
Primerl为位于 SEQ ID NO: 1的 5,端的第 lbp开始的正向序列; Primerl is a forward sequence located at the 5th end of SEQ ID NO: 1, starting at lbp;
Primer2为 SEQ ID NO: 1的中的 3'端反向序列。 Primer2 is the 3 'end reverse sequence in SEQ ID NO: 1.
扩增反应的条件: 在 50 μ 1的反应体积中含有 50mmol/L KC1, 10mmol/L Tris- CI, (pH8.5), 1.5mmol/L MgCl2, 200 μ mol/L dNTP, lOpmol引物, 1U的 Taq DNA聚合酶 (Clontech公司产品)。 在 PE9600型 DNA热循环仪(Perkin-Elmer公司)上按下列条件反应 25 个周期: 94。C 30sec; 55°C 30sec; 72°C 2min„ 在 RT-PCR时同时设 β -act in为阳性对照和 模板空白为阴性对照。 扩增产物用 QIAGEN公司的试剂盒纯化, 用 TA克隆试剂盒连接到 pCR 载体上 Unvitrogen公司产品) 。 DNA序列分析结果表明 PCR产物的 DNA序列与 SEQ II) NO: 1 所示的 1- 579bp完全相同。 Amplification reaction conditions: reaction volume containing 50 μ 1 of 5 0mmol / L KC1, 10mmol / L Tris- CI, (pH8.5), 1.5mmol / L MgCl 2, 200 μ mol / L dNTP, lOpmol primer , 1U of Taq DNA polymerase (Clontech). The reaction was performed on a PE9600 DNA thermal cycler (Perkin-Elmer) for 25 cycles under the following conditions: 94. C 30sec; 55 ° C 30sec; 72 ° C 2min „At the same time, set β-act in as a positive control and template blank as a negative control at the time of RT-PCR. Amplification products were purified using QIAGEN's kit and TA cloning kit Linked to the pCR vector (Unvitrogen product). DNA sequence analysis results show that the DNA sequence of the PCR product is exactly the same as the 1- 579bp shown in SEQ II) NO: 1.
实施例 3: Northern 印迹法分析人含 ATP/GTP结合结构域的核转换蛋白 10基因的表 达: Example 3: Northern blot analysis of human ATP / GTP binding domain-containing nuclear transfer protein 10 gene expression:
用一歩法提取总 RNA[Anal. Biochem 1987, 162, 156-159] 0 该法包括酸性硫氰酸胍 苯酚-氯仿抽提。 即用 4M异硫氰酸胍 -25mM柠檬酸钠, 0.2M乙酸钠 ( pH4.0 ) 对组织进行匀 浆, 加入 1倍体积的苯酚和 1/5体积的氯仿-异戊醇 (49: 1 ) , 混合后离心。 吸出水相层, 加入异丙醇 (0.8体积) 并将混合物离心得到 RNA沉淀。 将得到的 RNA沉淀用 70%乙醇洗涤, 干燥并溶于水中。 用 20 g RNA, 在含 20mM 3- (N-吗啉代) 丙磺酸 ( pH7.0 ) -¼Μ乙酸钠 - ImMEDTA- 2.2M甲醛的 1.2%琼脂糖凝胶上进行电泳。 然后转移至硝酸纤维素膜上。 用 α - 32P dATP通过随机引物法制备 32P-标记的 DM探针。 所用的 DNA探针为图 1所示的 PCR扩增的人含 ATP/GTP结合结抅域的核转换蛋白 10编码区序列(206p至 469bp)。 将 32P-标记的探针 (约 2 10°cpm/ml ) 与转移了 RNA的硝酸纤维素膜在一溶液中于 42°C杂交过夜, 该溶液包含 50% 甲酰胺 - 25mM KH2P04 ( pH7.4 ) -5 χ SSC-5 χ Denhardt's溶液和 200 μ g/ml鲑精 DN'A。 杂交之 后, 将滤膜在 1 χ SSC- 0.1%SDS中于 55 C洗 30min。 然后, 用 Phosphor Imager进行分析和定 实施例 4: 重组人含 ATP/GTP结合结构域的核转换蛋白 10的体外表达、 分离和纯化 根据 SEQ ID NO: 1和图 1所示的编码区序列, 设计出一对特异性扩增引物, 序列如下: Primer3: 5'- CCCCATATGATGCTGCGAACAGCTGGAGGGCAGG- 3' ( Seq ID No: 5 ) Total RNA was extracted by a one-step method [Anal. Biochem 1987, 162, 156-159] 0 This method involves acid guanidinium thiocyanate-chloroform extraction. That is, the tissue is homogenized with 4M guanidine isothiocyanate-25mM sodium citrate, 0.2M sodium acetate (pH4.0), and 1 time volume of phenol and 1/5 volume of chloroform-isoamyl alcohol (49: 1 ) And centrifuge after mixing. Aspirate the aqueous layer, add isopropanol (0.8 vol) and centrifuge the mixture to obtain RNA precipitate. The resulting RNA pellet was washed with 70% ethanol, dried and dissolved in water. Use 20 g RNA in 20 mM 3- (N-morpholino) propanesulfonic acid (pH 7.0)-¼ M sodium acetate -Perform electrophoresis on a 1.2% agarose gel of ImMEDTA- 2.2M formaldehyde. It was then transferred to a nitrocellulose membrane. 32 P dATP labeled probe 32 P- DM prepared by the random primer Method - with α. The DNA probe used was the human ATP / GTP binding crust domain-containing nuclear conversion protein 10 coding region sequence (206p to 469bp) amplified by PCR shown in FIG. A 32P-labeled probe (approximately 2 10 ° cpm / ml) was hybridized with a nitrocellulose membrane to which RNA was transferred at 42 ° C overnight in a solution containing 50% formamide-25mM KH 2 P0 4 ( pH7.4) -5 x SSC-5 x Denhardt's solution and 200 μg / ml salmon sperm DN'A. After hybridization, the filters were washed in 1 x SSC-0.1% SDS at 55 C for 30 min. Then, Phosphor Imager was used for analysis and determination Example 4: Recombinant human ATP / GTP binding domain-containing nuclear conversion protein 10 in vitro expression, isolation and purification According to the sequence of the coding region shown in SEQ ID NO: 1 and Figure 1, A pair of specific amplification primers was designed with the following sequence: Primer3: 5'- CCCCATATGATGCTGCGAACAGCTGGAGGGCAGG- 3 '(Seq ID No: 5)
Primer4: 5'- CCCGAATTCTCAGAGACAATTACCATACACTACA- 3' ( Seq ID No: 6 ) Primer4: 5'- CCCGAATTCTCAGAGACAATTACCATACACTACA- 3 '(Seq ID No: 6)
此两段引物的 5'端分别含有 Ndel和 EcoRI酶切位点, 其后分别为目的基因 5'端和 3'端 的编码序列, Nde I和 EcoR I酶切位点相应于表达载体质粒 ET-28 b (+) (Novagen公司产品, Cat. No.69865.3)上的选择性内切酶位点。 以含有全长目的基因的 pBS-0623F07质粒为模 板,进行 PCR反应。 PCR反应条件为: 总体积 50μ 1中含 pBS-0623F07质粒 10pg、 引物 Primer-3 和 Primer - 4分别为 lOpmol Advantage polymerase Mix ( Clontech公司产品) 1 μ 1。 循 环参数: 94 C 20s, 60°C 30s, 68°C 2 min,共 25个循环。 用 Ndel和 EcoRI分别对扩增产物和 质粒 pET-28(+)进行双酶切,分别回收大片段,并用 T4连接酶连接。 连接产物转化用氯化钙 法大肠杆细菌 DH5a,在含卡那霉素 (终浓度 30yg/ml ) 的 LB平板培养过夜后, 用菌落 PCR 方法筛选阳性克隆, 并进行测序。 挑选序列正确的阳性克隆 (pET- 0623F07 ) 用氯化钙法 将重组质粒转化大肠杆菌 BL21 (DE 3) p 1 y S s (No vagen公司产品)。 在含卡那霉素 (终浓度 30 yg/ral ) 的 LB液体培养基中, 宿主菌 BL21 ( pET-0623F07 ) 在 37°C培养至对数生长期, 加 入 IPTG至终浓度 lmmol/L, 继续培养 5小时。 离心收集菌体, 经超声波破菌,离心收集上清, 用能与 6个组氨酸 ( 6His-Tag ) 结合的亲和层析柱 His. Bind Quick Cartridge ( Novagen 公司产品) 进行层析, 得到了纯化的目的蛋白人含 ATP/GTP结合结构域的核转换蛋白 10 经 SDS-PAGE电泳, 在 10kDa处得到一单一的条带(图 2 )。 将该条带转移至 PVDF膜上用 Edams 水解法进行 N-端氨基酸序列分析, 结果 N-端 15个氨基酸与 SEQ ID NO: 2所示的 N-端 15个氨 基酸残基完全相同。 The 5 'ends of these two primers contain Ndel and EcoRI restriction sites, respectively, followed by the coding sequences of the 5' and 3 'ends of the target gene, respectively. The Nde I and EcoR I restriction sites correspond to the expression vector plasmid ET- 28 b (+) (Novagen, Cat. No. 69865.3) a selective endonuclease site. PCR was performed using the pBS-0623F07 plasmid containing the full-length target gene as a template. The PCR reaction conditions were as follows: a total volume of 50μ1 containing 10 pg of pBS-0623F07 plasmid, Primer-3 and Primer-4 were lOpmol Advantage polymerase Mix (Clontech) 1 μ1, respectively. Cycle parameters: 94 C 20s, 60 ° C 30s, 68 ° C 2 min, a total of 25 cycles. Ndel and EcoRI were used to double digest the amplified product and plasmid pET-28 (+), respectively, and large fragments were recovered and ligated with T4 ligase. The ligation product was transformed into colibacillus DH5a by calcium chloride method. After being cultured overnight in LB plates containing kanamycin (final concentration 30yg / ml), positive clones were selected by colony PCR method and sequenced. A positive clone (pET-0623F07) with the correct sequence was selected, and the recombinant plasmid was transformed into E. coli BL21 (DE 3) p 1 y S s (product of Novagen) by the calcium chloride method. In LB liquid medium containing kanamycin (final concentration 30 μg / ral), the host bacteria BL21 (pET-0623F07) was cultured at 37 ° C to the logarithmic growth phase, and IPTG was added to a final concentration of 1 mmol / L, and continued Incubate for 5 hours. The bacteria were collected by centrifugation, and the supernatant was collected by centrifugation. The supernatant was collected by centrifugation. The affinity chromatography column His. Bind Quick Cartridge (product of Novagen) was used to obtain 6 histidine (6His-Tag). The purified ATP / GTP binding domain-containing nuclear conversion protein 10 was purified by SDS-PAGE electrophoresis, and a single band was obtained at 10 kDa (Figure 2). The band was transferred to a PVDF membrane and the N-terminal amino acid sequence was analyzed by Edams hydrolysis method. As a result, the 15 amino acids at the N-terminus were identical to the 15 amino acid residues at the N-terminus shown in SEQ ID NO: 2.
实施例 5 抗人含 ATP/GTP结合结构域的核转换蛋白 10抗体的产生 Example 5 Production of Anti-Human ATP / GTP Binding Domain-Containing Nuclear Conversion Protein 10 Antibodies
用多肽合成仪 (PE公司产品)合成下述人含 ATP/GTP结合结构域的核转换蛋白 10特异 性的多肽: Synthesis of the following human ATP / GTP binding domain-containing nuclear conversion protein 10 using a peptide synthesizer (product of PE) Sexual peptides:
NH2-Met-Leu-Arg-Thr-Ala-Gly-Gly-Gln-Va l-Met-Ser-Lys-Glu-Lys-Gl y-COOH (SEQ ID NO: 7) 0 将该多肽分别与血蓝蛋白和牛血清白蛋白耦合形成复合, 方法参见: Avrameas, et al. Immunochemi s try, 1969; 6: 43。 用 4mg上述血蓝蛋白多肽复合物力口上完 全弗氏佐剂免疫家兔, 15天后再用血蓝蛋白多肽复合物加不完全弗氏佐剂加强免疫一次。 釆用经 15 y g/ml牛血清白蛋白多肽复合物包被的滴定板做 ELISA测定兔血清中抗体的滴 度。 用蛋白 A-Sepharose从抗体阳性的家兔血清中分离总 IgG。 将多肽结合于溴化氰活化 的 Sepharose4B柱上, 用亲和层析法从总 IgG中分离抗多肽抗体。 免疫沉淀法证明纯化的 抗体可特异性地与人含 ATP/GTP结合结构域的核转换蛋白 10结合。 NH 2 -Met-Leu-Arg- Thr-Ala-Gly-Gly-Gln-Va l-Met-Ser-Lys-Glu-Lys-Gl y-COOH (SEQ ID NO: 7) 0 , respectively, and the polypeptide Blood Coupling of cyanin and bovine serum albumin to form a complex, see Avrameas, et al. Immunochemi s try, 1969; 6: 43. Rabbits were immunized with 4 mg of the hemocyanin-polypeptide complex with complete Freund's adjuvant, and 15 days later, the hemocyanin-polypeptide complex plus incomplete Freund's adjuvant was used to boost the immunity once. 15Using a 15 μg / ml bovine serum albumin peptide complex-coated titer plate for ELISA to determine the antibody titer in rabbit serum. Total IgG was isolated from antibody-positive rabbit serum using protein A-Sepharose. The peptide was bound to a cyanogen bromide-activated Sepharose4B column, and anti-peptide antibodies were separated from the total IgG by affinity chromatography. The immunoprecipitation method demonstrated that the purified antibody could specifically bind to human ATP / GTP binding domain-containing nuclear conversion protein 10.
实施例 6: 本发明的多核苷酸片段用作杂交探针的应用 Example 6: Application of the polynucleotide fragment of the present invention as a hybridization probe
从本发明的多核苷酸中挑选出合适的寡核苷酸片段用作杂交探针有多方面的用途, 如用该探针可与不同来源的正常组织或病理组织的基因组或 cDNA文库杂交以鉴定其是否 含有本发明的多核苷酸序列和检出同源的多核苷酸序列,进一步还可用该探针检测本发明 的多核苷酸序列或其同源的多核苷酸序列在正常组织或病理组织细胞中的表达是否异 常。 Suitable oligonucleotide fragments selected from the polynucleotides of the present invention are used as hybridization probes in a variety of ways. For example, the probes can be used to hybridize to genomic or cDNA libraries of normal tissue or pathological tissue from different sources to It is determined whether it contains the polynucleotide sequence of the present invention and a homologous polynucleotide sequence is detected. Further, the probe can be used to detect the polynucleotide sequence of the present invention or its homologous polynucleotide sequence in normal tissues or Whether the expression in tissue cells is abnormal.
本实施例的目的是从本发明的多核苷酸 SEQ ID NO: 1 中挑选出合适的寡核苷酸片段 用作杂交探针, 并用滤膜杂交方法鉴定一些组织中是否含有本发明的多核苷酸序列或其 同源的多核苷酸序列。 滤膜杂交方法包括斑点印迹法、 Southern印迹法、 Northern印迹 法和复印方法等, 它们都是将待测的多核苷酸样品固定在滤膜上后使用基本相同的步骤 杂交。 这些相同的步骤是: 固定了样品的滤膜首先用不含探针的杂交缓冲液进行预杂交, 以使滤膜上样品的非特异性的结合部位被载体和合成的多聚物所饱和。 然后预杂交液被 含有标记探针的杂交缓冲液替换, 并保温使探针与靶核酸杂交。 杂交步骤之后, 未杂交 上的探针被一系列洗膜步骤除掉。 本实施例利用较高强度的洗膜条件 (如较低盐浓度和 较高的温度), 以使杂交背景降低且只保留特异性强的信号。 本实施例选用的探针包括两 类: 第一类探针是完全与本发明的多核苷酸 SEQ ID NO: 1相同或互补的寡核苷酸片段; 第二类探针是部分与本发明的多核苷酸 SEQ ID NO: 1相同或互补的寡核苷酸片段。 本实 施例选用斑点印迹法将样品固定在滤膜上, 在较高强度的的洗膜条件下, 第一类探针与 样品的杂交特异性最强而得以保留。 The purpose of this embodiment is to select a suitable oligonucleotide fragment from the polynucleotide SEQ ID NO: 1 of the present invention as a hybridization probe, and to identify whether some tissues contain the polynucleoside of the present invention by a filter hybridization method. Acid sequence or a homologous polynucleotide sequence thereof. Filter hybridization methods include dot blotting, Southern blotting, Northern blotting, and copying methods. They all use the same steps to hybridize the fixed polynucleotide sample to the filter. These same steps are as follows: The sample-immobilized filter is first pre-hybridized with a probe-free hybridization buffer so that the non-specific binding sites of the sample on the filter are saturated with the carrier and the synthetic polymer. The pre-hybridization solution is then replaced with a hybridization buffer containing labeled probes and incubated to hybridize the probes to the target nucleic acid. After the hybridization step, the unhybridized probes are removed by a series of membrane washing steps. This embodiment uses higher-intensity washing conditions (such as lower salt concentration and higher temperature) to reduce the hybridization background and retain only strong specific signals. The probes used in this embodiment include two types: the first type of probes are oligonucleotide fragments that are completely the same as or complementary to the polynucleotide SEQ ID NO: 1 of the present invention; the second type of probes are partially related to the present invention The polynucleotide SEQ ID NO: 1 is the same or complementary oligonucleotide fragment. In this embodiment, the dot blot method is used to fix the sample on the filter membrane. Under the high-intensity washing conditions, the first type of probe and the sample have the strongest hybridization specificity and are retained.
一、 探针的选用 First, the selection of the probe
从本发明的多核苷酸 SEQ ID NO: 1 中选择寡核苷酸片段用作杂交探针, 应遵循以下 原则和需要考虑的几个方面: The oligonucleotide fragment selected from the polynucleotide SEQ ID NO: 1 of the present invention for use as a hybridization probe should follow the following Principles and several aspects to consider:
1, 探针大小优选范围为 18-50个核苷酸; 1. The preferred range of probe size is 18-50 nucleotides;
2, GC含量为 30%-70%, 超过则非特异性杂交增加; 2, GC content is 30% -70%, non-specific hybridization increases when it exceeds;
3, 探针内部应无互补区域; 3. There should be no complementary regions inside the probe;
4, 符合以上条件的可作为初选探针, 然后进一步作计算机序列分析, 包括将该初选探针 分别与其来源序列区域 (即 SEQ ID NO: 1 )和其它已知的基因组序列及其互补区进 行同源性比较, 若与非靶分子区域的同源性大于 85%或者有超过 15 个连续碱基完全 相同, 则该初选探针一般就不应该使用; 4. Those that meet the above conditions can be used as primary selection probes, and then further computer sequence analysis, including the primary selection probe and its source sequence region (ie, SEQ ID NO: 1) and other known genomic sequences and their complements The regions are compared for homology. If the homology with the non-target molecular region is greater than 85% or there are more than 15 consecutive bases, then the primary probe should not be used;
5, 初选探针是否最终选定为有实际应用价值的探针还应进一步由实验确定。 5. Whether the preliminary selection probe is finally selected as a probe with practical application value should be further determined by experiments.
完成以上各方面的分析后挑选并合成以下二个探针: After completing the above analysis, select and synthesize the following two probes:
探针 1 (probel ), 属于第一类探针, 与 SEQ ID NO: 1 的基因片段完全同源或互补 ( 41Nt ) Probe 1 (probel), which belongs to the first type of probe, is completely homologous or complementary to the gene fragment of SEQ ID NO: 1 (41Nt)
5 ' -AAGGGAGGAGGAAGGATGAAAGGAAAGACAGAGGAGGAAGG-3 ' (SEQ ID NO: 8 ) 探针 2 (probe2), 属于第二类探针, 相当于 SEQ ID NO: 1 的基因片段或其互补片 段的替换突变序列 (41Nt ): 5'-AAGGGAGGAGGAAGGATGAAAGGAAAGACAGAGGAGGAAGG-3 '(SEQ ID NO: 8) Probe 2 (probe2), which belongs to the second type of probe, is equivalent to the replacement mutant sequence of the gene fragment of SEQ ID NO: 1 or its complementary fragment (41Nt):
5 ' -AAGGATCGAGGAAGGATGAAAATCGAGACAGAGATCGAAGG-3' ^SEQ ID NO: 9 ) 与以下具体实验步骤有关的其它未列出的常用试剂及其配制方法请参考文献: DNA PROBES G. H.Keller; M.M.Manak; Stockton Press, 1989 (USA)以及更常用的分子克隆实 验手册书籍如 《分子克隆实验指南》( 1998 年第二版) [美]萨姆布鲁克等著, 科学出版 社。 5 '-AAGGATCGAGGAAGGATGAAAATCGAGACAGAGAGAGAGAG-3' ^ SEQ ID NO: 9) For other commonly used reagents and their preparation methods related to the following specific experimental procedures, please refer to the literature: DNA PROBES GHKeller; MMManak; Stockton Press, 1989 (USA (USA) ) And more commonly used molecular cloning experiment manual books such as "Molecular Cloning Experiment Guide" (Second Edition 1998) [US] Sambrook et al., Science Press.
样品制备: Sample Preparation:
1 , 从新鲜或冰冻组织中提取 DNA 1.Extract DNA from fresh or frozen tissue
步骤: 1 )将新鲜或新鲜解冻的正常肝组织放入浸在冰上并盛有磷酸盐缓冲液 (PBS ) 的平皿中。 用剪刀或手术刀将组织切成小块。 操作中应保持组织湿润。 2 ) 以 lOOOg离心 切碎组织 10 分钟。 3)用冷匀浆缓冲液 ( 0.25mol/L 蔗糖; 25mmol/L Tris-HCl, pH7.5; 25隱 ol/LnaCl; 25麵 1/L MgCl2) 悬浮沉淀 (大约 10ml/g)。 4) 在 4。C 用电动匀浆器以 全速匀浆组织悬液, 直至组织被完全破碎。 5 ) lOOOg离心 】0分钟。 6)用重悬细胞沉淀 (每 0. lg最初组织样品加 1- 5ml ), 再以 lOOOg离心 10分钟。 7)用裂解缓冲液重悬沉 淀 (每 0. lg最初组织样品加 1ml ), 然后接以下的苯酚抽提法。 Steps: 1) Place fresh or freshly thawed normal liver tissue in a plate immersed in ice and filled with phosphate buffered saline (PBS). Cut the tissue into small pieces with scissors or a scalpel. Keep tissue moist during operation. 2) Centrifuge the tissue at 1,000 g for 10 minutes. 3) Suspend the pellet (approximately 10 ml / g) with a cold homogenization buffer (0.25 mol / L sucrose; 25 mmol / L Tris-HCl, pH 7.5; 25 cryptool / LnaCl; 25 surface 1 / L MgCl 2 ). 4) at 4. C Use an electric homogenizer to homogenize the tissue suspension at full speed until the tissue is completely broken. 5) Centrifuge at 1000g for 0 minutes. 6) Resuspend the cell pellet (add 1-5 ml per 0.1 g of the original tissue sample) and centrifuge at 1,000 g for 10 minutes. 7) Resuspend the pellet with lysis buffer (add 1 ml per 0.1 g of the initial tissue sample), and then follow the phenol extraction method below.
2, DNA的苯酚抽提法 歩骤: 1 )用 1- 10ml 冷 PBS洗细胞, lOOOg离心 10分钟。 2 )用冷细胞裂解液重悬 浮沉淀的细胞( 1 108细胞 /ml )最少应用 lOOul裂解缓冲液。 3)加 SDS至终浓度为 1%, 如果在重悬细胞之前将 SDS 直接加入到细胞沉淀中, 细胞可能会形成大的团块而难以破 碎, 并降低的总产率。 这一点在抽提〉107细胞时特别严重。 4 ) 加蛋白酶 K 至终浓度 200ug/ml。 5) 50。C保温反应 1小时或在 37DC轻轻振摇过夜。 6)用等体积苯酚: 氯仿: 异戊醇 ( 25: 24: 1 )抽提, 在小离心机管中离心 10 分钟。 两相应清楚分离, 否则重新 进行离心。 7 )将水相转移至新管。 8 )用等体积氯仿: 异戊醇 (24: 1 )抽提, 离心 10 分钟。 9)将含 DNA的水相转移至新管。 然后进行 DNA的纯化和乙醇沉淀。 2, phenol extraction method for DNA Steps: 1) Wash the cells with 1-10 ml of cold PBS and centrifuge at 1,000 g for 10 minutes. 2) with cold cell lysate pelleted cells were resuspended (1 108 cells / ml) Minimum application lOOul lysis buffer. 3) Add SDS to a final concentration of 1%. If SDS is added directly to the cell pellet before resuspending the cells, the cells may form large clumps that are difficult to break, and reduce the overall yield. This is particularly serious when extracting> 10 7 cells. 4) Add proteinase K to a final concentration of 200ug / ml. 5) 50. C or incubated gently shaking for 1 hour at 37 D C overnight. 6) Extract with an equal volume of phenol: chloroform: isoamyl alcohol (25: 24: 1) and centrifuge in a small centrifuge tube for 10 minutes. The two should be clearly separated, otherwise centrifuge again. 7) Transfer the water phase to a new tube. 8) Extract with an equal volume of chloroform: isoamyl alcohol (24: 1) and centrifuge for 10 minutes. 9) Transfer the DNA-containing aqueous phase to a new tube. The DNA was then purified and ethanol precipitated.
3, DNA的纯化和乙醇沉淀 3, DNA purification and ethanol precipitation
歩骤: 1 )将 1/10体积 2mol/L醋酸钠和 2倍体积冷 100%乙醇加到 DNA溶液中, 混 匀。 在 -20°C放置 1小时或至过夜。 2 )离心 10分钟。 3)小心吸出或倒出乙醇。 4)用 70% 冷乙醇 500ul洗涤沉淀, 离心 5分钟。 5 ) 小心吸出或倒出乙醇。 用 500ul冷乙醇洗涤沉 淀, 离心 5分钟。 6) 小心吸出或倒出乙醇, 然后在吸水纸上倒置使残余乙醇流尽。 空气 干燥 10- 15分钟, 以使表面乙醇挥发。 注意不要使沉淀完全干燥, 否则较难重新溶解。 7 ) 以小体积 TE或水重悬 DNA沉淀。 低速涡旋振荡或用滴管吹吸, 同时逐渐增加 TE, 混合 至 DNA充分溶解, 每 1-5 106细胞所提取的大约加 lul。 Steps: 1) Add 1/10 volume of 2mol / L sodium acetate and 2 volumes of cold 100% ethanol to the DNA solution and mix. Leave at -20 ° C for 1 hour or overnight. 2) Centrifuge for 10 minutes. 3) Carefully aspirate or pour out the ethanol. 4) Wash the pellet with 500ul of 70% cold ethanol and centrifuge for 5 minutes. 5) Carefully aspirate or pour out the ethanol. Wash the pellet with 500ul of cold ethanol and centrifuge for 5 minutes. 6) Carefully aspirate or pour out the ethanol, then invert on the absorbent paper to drain off the residual ethanol. Air dry for 10-15 minutes to evaporate the surface ethanol. Be careful not to allow the pellet to dry completely, otherwise it will be more difficult to re-dissolve. 7) Resuspend the DNA pellet in a small volume of TE or water. Vortex at low speed or suck with a pipette while gradually increasing TE, mix until the DNA is fully dissolved, and add approximately 1 ul per 1-5 10 6 cells.
以下第 8-13步骤仅用于必须除去污染时, 否则可直接进行第 14步骤。 The following steps 8-13 are only used when contamination must be removed, otherwise step 14 can be performed directly.
8 ) 将 RNA酶 A加到 DNA溶液中, 终浓度为 100ug/ml, 37°C保温 30分钟。 9 )加入 SDS 和蛋白酶 K, 终浓度分别为 0.5%和 100ug/ml。 37°C保温 30分钟。 10)用等体积的苯酚: 氯仿: 异戊醇 ( 25: 24: 1 )抽提反应液, 离心 10 分钟。 11 )小心移出水相, 用等体积 的氯仿: 异戊醇(24: 1 )重新抽提,离心 10分钟。 12)小心移出水相,加 1/10体积 2mol/L 醋酸钠和 2.5体积冷乙醇, 混匀置 - 20°C 1小时。 13)用 70%乙醇及 100%乙醇洗涤沉淀, 空气干燥, 重悬核酸, 过程同第 3-6 步骤。 14) 测定 A26。和 A28。以检测 DNA 的纯度及产 率。 15 ) 分装后存放于 -20°C。 8) Add RNase A to the DNA solution to a final concentration of 100u g / ml, and incubate at 37 ° C for 30 minutes. 9) Add SDS and proteinase K, the final concentration is 0.5% and 100ug / ml. Incubate at 37 ° C for 30 minutes. 10) Extract the reaction solution with an equal volume of phenol: chloroform: isoamyl alcohol (25: 24: 1) and centrifuge for 10 minutes. 11) Carefully remove the aqueous phase, re-extract with an equal volume of chloroform: isoamyl alcohol (24: 1), and centrifuge for 10 minutes. 12) Carefully remove the water phase, add 1/10 volume of 2mol / L sodium acetate and 2.5 volume of cold ethanol, mix and let stand at -20 ° C for 1 hour. 13) Wash the pellet with 70% ethanol and 100% ethanol, air dry, and resuspend the nucleic acid. The process is the same as steps 3-6. 14) Measure A 26 . And A 28 . To detect the purity and yield of DNA. 15) Store at -20 ° C after dispensing.
样膜的制备: Preparation of sample film:
1 )取 4x 2 张适当大小的硝酸纤维素膜(NC膜), 用铅笔在其上轻轻标出点样位置及 样号, 每一探针需两张 NC膜, 以便在后面的实验步骤中分别用高强度条件和强度条件洗 膜 。 1) Take 4x 2 pieces of nitrocellulose membranes (NC membranes) of appropriate size, and mark the spotting position and sample number on it with a pencil. Two NC membranes are required for each probe, in order to follow the experimental steps later The film was washed with high-strength conditions and strength conditions, respectively.
2 ) 吸取及对照各 15微升, 点于样膜上, 在室温中晾干。 2) Aspirate and control 15 microliters each, spot on the sample film, and dry at room temperature.
3 ) 置于浸润有 0. Imol/LNaOH, 1.5mol/LNaCl的滤纸上 5分钟 (两次), 晾干置于浸润 有 0.5mol/L Tris-HCl ( pH7.0 ), 3mol/LNaCl的滤纸上 5分钟 (两次), 晾干。 4) 夹于干净滤纸中, 以铝箔包好, 60- 80°C真空干燥 2小时。 3) Place on filter paper infiltrated with 0.1 mol / L NaOH, 1.5 mol / L NaCl for 5 minutes (twice), dry and place in the infiltration Filter on 0.5 mol / L Tris-HCl (pH 7.0) and 3 mol / L NaCl for 5 minutes (twice) and dry. 4) Caught in clean filter paper, wrapped in aluminum foil, and dried under vacuum at 60-80 ° C for 2 hours.
探针的标记 Labeling of probes
1 )3 μ lProbe( 0. IOD/Ιθμ 1 ),加入 2 μ IKinase缓冲液, 8-10 uCi y-32P-dATP+2U Kinase, 以补加至终体积 20μ1。 1) 3 μl Probe (0.1 IOD / Ιθμ 1), add 2 μ IKinase buffer, 8-10 uCi y- 32 P-dATP + 2U Kinase, to make up to a final volume of 20 μ1.
2 ) 37 °C 保温 2小时。 2) Incubate at 37 ° C for 2 hours.
3)加 1/5体积的溴酚蓝指示剂 (ΒΡΒλ 3) Add 1/5 volume of bromophenol blue indicator (ΒΒΒλ)
4 ) 过 Sephadex G-50柱。 4) Pass through a Sephadex G-50 column.
5 ) 至有 32P- Probe洗出前开始收集第一峰(可用 Monitor监测)。 5) Before the 32 P-Probe is washed out, start collecting the first peak (can be monitored by Monitor).
6) 5滴 /管, 收集 10- 15管。 6) 5 drops / tube, collect 10-15 tubes.
7 )用液体闪烁仪监测同位素量 7) Monitor the amount of isotope with a liquid scintillator
8)合并第一峰的收集液后即为所需制备的 32P-Probe (第二峰为游离 γ- 32P- dATP )。 预杂交 8) After the collection solution of the first peak is combined, the 32 P-Probe (the second peak is free γ- 32 P-dATP) to be prepared. Pre-hybridization
将样膜置于塑料袋中, 加入 3- 10mg预杂交液 ( lOxDenhardt's; 6xSSC, 0. lmg/ml CT DNA (小牛胸腺 DNA)。), 封好袋口后, 68DC水浴摇 2小时。 Place the sample film in a plastic bag, add 3-10 mg of prehybridization solution (lOxDenhardt's; 6xSSC, 0.1 mg / ml CT DNA (calf thymus DNA).), Seal the bag, and shake in a 68 D C water bath for 2 hours. .
杂交 Cross
将塑料袋剪去一角, 加入制备好的探针, 封好袋口后, 42°C水浴摇过夜。 Cut a corner of the plastic bag, add the prepared probe, seal the bag, and shake it at 42 ° C in a water bath overnight.
洗膜: Wash film:
高强度洗膜: High-intensity washing film:
1 )取出已杂交好的样膜。 1) Take out the hybridized sample membrane.
2 ) 2xSSC, 0.1%SDS中 , 40°C洗 15分钟 ( 2次)。 2) 2xSSC, 0.1% SDS, wash at 40 ° C for 15 minutes (twice).
3 ) 0. lxSSC, 0.1%SDS中 , 40°C洗 15分钟 ( 2次)。 3) 0.1xSSC, 0.1% SDS, wash at 40 ° C for 15 minutes (twice).
4 ) 0. lxSSC, 0.1%SDS中 , 55°C洗 30分钟 ( 2次), 室温晾干。 4) 0.1xSSC, 0.1% SDS, wash at 55 ° C for 30 minutes (twice), and dry at room temperature.
低强度洗膜: Low-intensity washing film:
1 )取出已杂交好的样膜。 1) Take out the hybridized sample membrane.
2 ) 2xSSC, 0.1%SDS中, 37°C洗 15分钟 ( 2次)。 2) 2xSSC, 0.1% SDS, wash at 37 ° C for 15 minutes (twice).
3 ) 0. lxSSC, 0.1%SDS中, 37°C洗 15分钟 ( 2次)。 3) 0.1xSSC, 0.1% SDS, wash at 37 ° C for 15 minutes (twice).
4) 0. lxSSC, 0.1%SDS中, 40°C洗 15分钟 ( 2次), 室温晾干。 X -光自显影: 4) In 0.1xSSC, 0.1% SDS, wash at 40 ° C for 15 minutes (twice), and dry at room temperature. X-ray autoradiography:
-70°C, X-光自显影 (压片时间根据杂交斑放射性强弱而定)。 -70 ° C, X-ray autoradiography (pressing time depends on the radioactivity of the hybrid spot).
实验结果: Experimental results:
采用低强度洗膜条件所进行的杂交实验, 以上四个探针杂交斑放射性强弱没有明显 区别; 而采用低强度洗膜条件所进行的杂交实验, 探针 1 的杂交斑放射性强度明显强于 其它三个探针杂交斑的放射性强度。 因而可用探针 1 定性和定量地分析本发明的多核苷 酸在不同组织中的存在和差异表达。 The hybridization experiments performed under low-intensity membrane washing conditions showed no significant difference in the radioactivity of the above four probe hybrid spots; while the hybridization experiments performed under low-intensity membrane washing conditions, the radioactive intensity of probe 1 was significantly stronger than The radioactivity of the other three probe hybridization spots. Therefore, the probe 1 can be used to qualitatively and quantitatively analyze the presence and differential expression of the polynucleotide of the present invention in different tissues.
工业实用性 Industrial applicability
本发明的多肽以及该多肽的拮抗剂、 激动剂和抑制剂可直接用于疾病治疗, 例如, 可治疗生殖系统的发育紊乱症、 相关组织的肿瘤及癌症等。 The polypeptides of the present invention, as well as antagonists, agonists and inhibitors of the polypeptides, can be directly used in the treatment of diseases, for example, they can treat development disorders of the reproductive system, tumors and cancers of related tissues, and the like.
哺乳动物的精子形成过程的第一阶段为精子细胞发育的开始, 第二阶段即通过染色质 的融合及聚集形成完整的、 转录失活的非核小体结构。 这一融合过程包含着蛋白的转换。 这些特异的转换蛋白在成熟精子形成的第二阶段起着重要的调节作用, 这些蛋白的表达 异常将导致个体无法形成正常的、 成熟的精子, 从而引发各种相关的生殖系统疾病 The first stage of mammalian spermatogenesis is the beginning of sperm cell development, and the second stage is the formation of a complete, transcriptionally inactivated non-nucleosome structure through fusion and aggregation of chromatin. This fusion process involves the conversion of proteins. These specific conversion proteins play an important regulatory role in the second stage of mature sperm formation. Abnormal expression of these proteins will cause individuals to fail to form normal, mature sperm, which will cause various related reproductive system diseases
[Freder ic CHIRAT, Ar let te MARTINAGE et al. , Eur. J. Biochem. 1991 , 198: 13-20] 核转换蛋白 1 是精子细胞特异蛋白中的一种, 含有特异的核转换蛋白 1 结构域, 该结构 域的表达异常将直接导致蛋白在精子形成过程中的功能异常, 从而引发各种相关的生殖 系统疾病及胚胎发育紊乱性疾病。 [Freder ic CHIRAT, Ar let te MARTINAGE et al., Eur. J. Biochem. 1991, 198: 13-20] Nuclear transfer protein 1 is one of the sperm cell-specific proteins and contains a specific nuclear transfer protein 1 domain The abnormal expression of this domain will directly lead to the abnormal function of the protein during spermatogenesis, which will cause various related diseases of the reproductive system and disorders of embryonic development.
由此可见, 本发明的人含 ATP/GTP 结合结构域的核转换蛋白 1 0 的表达异常将产 生各种疾病尤其是生殖系统疾病及胚胎发育紊乱性疾病, 这些疾病包括但不限于: It can be seen that the abnormal expression of the human ATP / GTP binding domain-containing nuclear conversion protein 10 in the present invention will cause various diseases, especially diseases of the reproductive system and disorders of embryonic development. These diseases include, but are not limited to:
生殖系统疾病: 睾丸和附睾炎症, 睾丸肿瘤如精原细胞癌、 胚胎性癌、 畸胎瘤、 绒毛 膜癌、 卵黄囊瘤、 睾丸间质细胞瘤, 附睾肿瘤等。 Reproductive system diseases: Testicular and epididymal inflammation, testicular tumors such as seminoma, embryonic cancer, teratoma, chorionic carcinoma, yolk sac tumor, testicular stromal cell tumor, epididymal tumor, etc.
胚胎发育紊乱性疾病: 脊柱裂、 颅脑裂、 无脑畸形、 脑膨出、 孔脑畸形、 Down 综合症、 先天性脑积水、 导水管畸形、 软骨发育不全性侏儒病、 脊柱骨骺发育不良症、 假软骨发育不全 症、 Langer-G iedion 综合症、 漏斗胸、 生殖腺发育不全、 先天性肾上腺增生、 尿道上裂、 隐 、 伴有身材矮小的畸形综合症如 Conradi综合症与 Danbol t- Cl os s综合症、 先天性青光眼或 白内障、 先天性晶状体位置异常、 先夭性小睑裂、 视网膜发育异常、 先天性视神经萎缩、 先天 性感觉神经性听觉损失、 裂手裂脚症、 畸胎、 Wi l l iams 综合症、 Alagi l le 综合症、 贝魏二氏 综合症等。 Embryonic disorders: spina bifida, craniocerebral fissure, anencephaly, cerebral bulge, foramen deformity, Down syndrome, congenital hydrocephalus, aqueduct malformation, dwarfism of cartilage hypoplasia, dysplasia of the spine Disease, pseudochondral dysplasia, Langer-Giedion syndrome, funnel chest, gonad hypoplasia, congenital adrenal hyperplasia, urethral fissure, crypt, with short stature syndromes such as Conradi syndrome and Danbol t-Cl os s syndrome, congenital glaucoma or cataract, congenital lens abnormality, congenital small eyelid fissure, retinal dysplasia, congenital optic nerve atrophy, congenital sensorineural hearing loss, cleft palsy, teratosis, Wi ll iams syndrome, Alagi l le syndrome, Bayer II Syndrome, etc.
本发明的多肽以及该多肽的拮抗剂、 激动剂和抑制剂可直接用于疾病治疗, 例如, 可治疗各种疾病尤其是生殖系统疾病及胚胎发育紊乱性疾病等。 The polypeptide of the present invention, as well as its antagonists, agonists and inhibitors, can be directly used in the treatment of diseases, for example, it can treat various diseases, especially diseases of the reproductive system and disorders of embryonic development.
本发明也提供了筛选化合物以鉴定提高(激动剂)或阻遏(拮抗剂 人含 ATP/GTP结 合结构域的核转换蛋白 10 的药剂的方法。 激动剂提高人含 ATP/GTP 结合结构域的核 转换蛋白 10 刺激细胞增殖等生物功能, 而拮抗剂阻止和治疗与细胞过度增殖有关的 紊乱如各种癌症。 例如, 能在药物的存在下, 将哺乳动物细胞或表达人含 ATP/GTP 结 合结构域的核转换蛋白 10的膜制剂与标记的人含 ATP/GTP结合结构域的核转换蛋白 10 一起培养。 然后测定药物提高或阻遏此相互作用的能力。 The invention also provides methods for screening compounds to identify agents that increase (agonist) or repress (antagonist human ATP / GTP binding domain-containing nuclear conversion protein 10). Agonists enhance human ATP / GTP binding domain-containing nuclear Transforming protein 10 stimulates biological functions such as cell proliferation, and antagonists prevent and treat disorders related to excessive cell proliferation, such as various cancers. For example, mammalian cells or human-expressing ATP / GTP-containing structures can be expressed in the presence of drugs A membrane preparation of nuclear transfer protein 10 of the domain was cultured with labeled human nuclear transfer protein 10 containing an ATP / GTP binding domain. The ability of the drug to increase or block this interaction was then determined.
人含 ATP/GTP结合结构域的核转换蛋白 10的拮抗剂包括筛选出的抗体、 化合物、 受体缺失物和类似物等。 人含 ATP/GTP 结合结构域的核转换蛋白 10 的拮抗剂可以与 人合 ATP/GTP 结合结构域的核转换蛋白 10 结合并消除其功能, 或是抑制该多肽的产 生, 或是与该多肽的活性位点结合使该多肽不能发挥生物学功能。 Antagonists of human ATP / GTP binding domain-containing nuclear transfer protein 10 include screened antibodies, compounds, receptor deletions, and the like. Antagonists of human ATP / GTP-binding domain-containing nucleoproteins 10 can bind to human ATP / GTP-binding domain-containing nucleoproteins 10 and eliminate their functions, or inhibit the production of the polypeptide, or with the polypeptide The active site binding prevents the polypeptide from performing biological functions.
在筛选作为拮抗剂的化合物时, 可以将人含 ATP/GTP结合结构域的核转换蛋白 10 加入生物分析测定中, 通过测定化合物对人含 ATP/GTP 结合结构域的核转换蛋白 10 和其受体之间相互作用的影响来确定化合物是否是拮抗剂。 用上述筛选化合物的同样 方法, 可以筛选出起拮抗剂作用的受体缺失物和类似物。 能与人含 ATP/GTP 结合结构 域的核转换蛋白 10 结合的多肽分子可通过筛选由各种可能组合的氨基酸结合于固相 物组成的随机多肽库而获得。 筛选时, 一般应对人含 ATP/GTP 结合结构域的核转换蛋 白 10分子进行标记。 When screening compounds as antagonists, human ATP / GTP-binding domain-containing nuclear transfer protein 10 can be added to a bioanalytical assay. The effects of interactions between humans to determine whether a compound is an antagonist. Receptor deletions and analogs that act as antagonists can be screened in the same way as for screening compounds described above. Polypeptide molecules capable of binding to human ATP / GTP binding domain-containing nucleoprotein 10 can be obtained by screening a random peptide library composed of various possible combinations of amino acids bound to a solid phase. During screening, 10 human ATP / GTP binding domain-containing nuclear transduction proteins should be labeled.
本发明提供了用多肽, 及其片段、 衍生物、 类似物或它们的细胞作为抗原以生产 抗体的方法。 这些抗体可以是多克隆抗体或单克隆抗体。 本发明还提供了针对人含 ATP/GTP结合结构域的核转换蛋白 10抗原决定簇的抗体。 这些抗体包括(但不限于): 多克隆抗体、 单克隆抗体、 嵌合抗体、 单链抗体、 Fab 片段和 Fab 表达文库产生的片 段。 The present invention provides a method for producing an antibody using a polypeptide, a fragment, a derivative, an analog thereof, or a cell thereof as an antigen. These antibodies can be polyclonal or monoclonal antibodies. The present invention also provides antibodies directed against human ATP / GTP binding domain-containing nuclear conversion protein 10 epitopes. These antibodies include (but are not limited to): polyclonal antibodies, monoclonal antibodies, chimeric antibodies, single chain antibodies, Fab fragments, and fragments generated from Fab expression libraries.
多克隆抗体的生产可用人含 ATP/GTP 结合结构域的核转换蛋白 10 直接注射免疫 动物 (如家兔, 小鼠, 大鼠等) 的方法得到, 多种佐剂可用于增强免疫反应, 包括但 不限于弗氏佐剂等。 制备人含 ATP/GTP 结合结构域的核转换蛋白 10 的单克隆抗体的 技术包括但不限于杂交瘤技术(Kohler and Milstein. Nature, 1975, 256: 495-497) , 三瘤技术, 人 Β-细胞杂交瘤技术, EBV-杂交瘤技术等。 将人恒定区和非人源的可变区 结合的嵌合抗体可用已有的技术生产(Morr i son et a l , PNAS, 1985, 81 : 6851 ) ,, 而已 有的生产单链抗体的技术 0J. S. Pa t No. 4946778)也可用于生产抗人含 ATP/GTP 结合 结构域的核转换蛋白 1 0的单链抗体。 Polyclonal antibodies can be produced by injecting human ATP / GTP binding domain-containing nuclear transfer protein 10 directly into immunized animals (such as rabbits, mice, rats, etc.). A variety of adjuvants can be used to enhance the immune response, including But it is not limited to Freund's adjuvant. Techniques for preparing human monoclonal antibodies containing ATP / GTP binding domain-containing nuclear transfer protein 10 include, but are not limited to, hybridoma technology (Kohler and Milstein. Nature, 1975, 256: 495-497), triple tumor technology, human beta- Cell hybridoma technology, EBV-hybridoma technology, etc. Human constant region and non-human variable region Bound chimeric antibodies can be produced using existing techniques (Morrson et al, PNAS, 1985, 81: 6851), and existing techniques for producing single-chain antibodies (0J. S. Pat No. 4946778) can also be used. Production of single-chain antibodies against human ATP / GTP binding domain-containing nuclear transfer protein 10.
抗人含 ATP/GTP结合结构域的核转换蛋白 10的抗体可用于免疫组织化学技术中, 检测活检标本中的人含. ATP/GTP结合结构域的核转换蛋白 10。 Antibodies against human ATP / GTP binding domain-containing nuclear transfer protein 10 can be used in immunohistochemical techniques to detect human ATP / GTP binding domain-containing nuclear transfer protein 10 in biopsy specimens.
与人含 ATP/GTP 结合结构域的核转换蛋白 10 结合的单克隆抗体也可用放射性同 位素标记, 注入体内可跟踪其位置和分布。 这种放射性标记的抗体可作为一种非创伤 性诊断方法用于肿瘤细胞的定位和判断是否有转移。 Monoclonal antibodies that bind to human ATP / GTP binding domain-containing nucleoprotein 10 can also be labeled with radioisotopes and injected into the body to track their location and distribution. This radiolabeled antibody can be used as a non-invasive diagnostic method to locate tumor cells and determine whether there is metastasis.
抗体还可用于设计针对体内某一特殊部位的免疫毒素。 如人含 ATP/GTP结合结构 域的核转换蛋白 1 0 高亲和性的单克隆抗体可与细菌或植物毒素(如白喉毒素, 蓖麻蛋 白, 红豆碱等)共价结合。 一种通常的方法是用巯基交联剂如 SPDP , 攻击抗体的氨基, 通过二硫键的交换, 将毒素结合于抗体上, 这种杂交抗体可用于杀灭人含 ATP/GTP 结 合结构域的核转换蛋白 1 0阳性的细胞。 Antibodies can also be used to design immunotoxins that target a particular part of the body. For example, human ATP / GTP binding domain-containing nuclear conversion proteins. 10 High-affinity monoclonal antibodies can covalently bind to bacterial or phytotoxins (such as diphtheria toxin, ricin, ormosine, etc.). A common method is to attack the amino group of an antibody with a thiol cross-linking agent such as SPDP and bind the toxin to the antibody through the exchange of disulfide bonds. This hybrid antibody can be used to kill humans that contain the ATP / GTP binding domain. Nuclear transfer protein 10 positive cells.
本发明中的抗体可用于治疗或预防与人含 ATP/GTP 结合结构域的核转换蛋白 1 0 相关的疾病。 给予适当剂量的抗体可以刺激或阻断人含 ATP/GTP 结合结构域的核转换 蛋白 1 0的产生或活性。 The antibodies of the present invention can be used to treat or prevent diseases related to human ATP / GTP binding domain-containing nuclear conversion protein 10. Administration of an appropriate dose of the antibody can stimulate or block the production or activity of human ATP / GTP binding domain-containing nuclear converter protein 10.
本发明还涉及定量和定位检测人含 ATP/GTP 结合结构域的核转换蛋白 10 水平的 诊断试验方法。 这些试验是本领域所熟知的, 且包括 FISH 测定和放射免疫测定。 试 验中所检测的人含 ATP/GTP 结合结构域的核转换蛋白 10 水平, 可以用作解释人含 ATP/GTP结合结构域的核转换蛋白 1 0在各种疾病中的重要性和用于诊断人含 ATP/GTP 结合结构域的核转换蛋白 10起作用的疾病。 The invention also relates to a diagnostic test method for the quantitative and localization detection of human ATP / GTP binding domain-containing nuclear converter protein 10 levels. These tests are well known in the art and include FISH assays and radioimmunoassays. The level of human ATP / GTP binding domain-containing nuclear transfer protein 10 detected in the test can be used to explain the importance of human ATP / GTP binding domain-containing nuclear transfer protein 10 in various diseases and for diagnosis Diseases in which human ATP / GTP binding domain-containing nucleoprotein 10 functions.
本发明的多肽还可用作肽谱分析, 例如, 多肽可用物理的、 化学或酶进行特异性 切割, 并进行一维或二维或三维的凝胶电泳分析,更好的是进行质谱分析。 The polypeptide of the present invention can also be used for peptide mapping analysis. For example, the polypeptide can be specifically cleaved by physical, chemical or enzymatic analysis, and subjected to one-dimensional or two-dimensional or three-dimensional gel electrophoresis analysis, and more preferably mass spectrometry analysis.
编码人含 ATP/GTP 结合结构域的核转换蛋白 1 0 的多核苷酸也可用于多种治疗目 的。 基因治疗技术可用于治疗由于人含 ATP/GTP 结合结构域的核转换蛋白 1 0 的无表 达或异常 /无活性表达所致的细胞增殖、 发育或代谢异常。 重组的基因治疗载体(如病 毒载体)可设计用于表达变异的人含 ATP/GTP 结合结构域的核转换蛋白 1 0, 以抑制内 源性的人含 ATP/GTP结合结构域的核转换蛋白 1 0活性。例如,一种变异的人含 ATP/GTP 结合结构域的核转换蛋白 10 可以是缩短的、 缺失了信号传导功能域的人含 ATP/GTP 结合结构域的核转换蛋白 10, 虽可与下游的底物结合, 但缺乏信号传导活性。 因此重 组的基因治疗载体可用于治疗人含 ATP/GTP 结合结构域的核转换蛋白 10 表达或活性 异常所致的疾病。 来源于病毒的表达载体如逆转录病毒、 腺病毒、 腺病毒相关病毒、 单纯疱疹病毒、 细小病毒等可用于将编码人含 ATP/GTP 结合结构域的核转换蛋白 10 的多核苷酸转移至细胞内。 构建携带编码人含 ATP/GTP 结合结构域的核转换蛋白 10 的多核苷酸的重组病毒载体的方法可见于已有文献(Sambrook, et al.)。 另外重组编 码人含 ATP/GTP 结合结构域的核转换蛋白 10 的多核苷酸可包装到脂质体中转移至细 胞内。 Polynucleotides encoding human ATP / GTP binding domain-containing nuclear conversion protein 10 can also be used for a variety of therapeutic purposes. Gene therapy technology can be used to treat abnormal cell proliferation, development, or metabolism caused by the non-expression or abnormal / inactive expression of human ATP / GTP binding domain-containing nuclear converter protein 10. Recombinant gene therapy vectors (such as viral vectors) can be designed to express mutated human ATP / GTP binding domain-containing nuclear conversion protein 10 to inhibit endogenous human ATP / GTP binding domain-containing nuclear conversion protein 10 activity. For example, a mutated human ATP / GTP binding domain-containing nuclear transfer protein 10 may be a shortened human ATP / GTP binding domain-containing nuclear transfer protein 10 that lacks a signaling domain. Substrate binding, but lacks signaling activity. Therefore heavy The group of gene therapy vectors can be used for treating diseases caused by abnormal expression or activity of nuclear conversion protein 10 containing human ATP / GTP binding domain. Virus-derived expression vectors such as retrovirus, adenovirus, adenovirus-associated virus, herpes simplex virus, parvovirus, etc. can be used to transfer a polynucleotide encoding a human ATP / GTP binding domain-containing nuclear conversion protein 10 to a cell Inside. Methods for constructing a recombinant viral vector carrying a polynucleotide encoding a human ATP / GTP binding domain-containing nuclear transfer protein 10 can be found in the literature (Sambrook, et al.). In addition, a recombinant polynucleotide encoding human ATP / GTP binding domain-containing nuclear transfer protein 10 can be packaged into liposomes and transferred into cells.
多核苷酸导入组织或细胞内的方法包括: 将多核苷酸直接注入到体内组织中; 或 在体外通过载体(如病毒、 噬菌体或质粒等)先将多核苷酸导入细胞中, 再将细胞移植 到体内等。 Methods for introducing a polynucleotide into a tissue or cell include: directly injecting the polynucleotide into a tissue in vivo; or introducing the polynucleotide into a cell in vitro through a vector (such as a virus, phage, or plasmid), and then transplanting the cell Into the body and so on.
^人含 ATP/GTP结合结构域的核转换蛋白 10 mRNA 的寡核苷酸(包括反义 RNA 和 DNA)以及核酶也在本发明的范围之内。核酶是一种能特异性分解特定 RNA的酶样 RNA 分子, 其作用机制是核酶分子与互补的靶 RNA 特异性杂交后进行核酸内切作用。 反义 的 RNA和 DNA及核酶可用已有的任何 RNA或 DNA合成技术获得, 如固相磷酸酰胺化学 合成法合成寡核苷酸的技术已广泛应用。 反义 RNA分子可通过编码该 RNA的 DNA序列 在体外或体内转录获得。 这种 DNA序列已整合到载体的 RNA聚合酶启动子的下游。 为 了增加核酸分子的稳定性, 可用多种方法对其进行修饰, 如增加两侧的序列长度, 核 糖核苷之间的连接应用磷酸硫酯键或肽键而非磷酸二酯键。 ^ Human oligonucleotides (including antisense RNA and DNA) containing ATP / GTP binding domain nucleoprotein 10 mRNA and ribozymes are also within the scope of the present invention. A ribozyme is an enzyme-like RNA molecule that specifically decomposes specific RNA. Its mechanism of action is that the ribozyme molecule specifically hybridizes with a complementary target RNA for endonucleation. Antisense RNA, DNA, and ribozymes can be obtained using any existing RNA or DNA synthesis technology, such as solid-phase phosphate amide chemical synthesis to synthesize oligonucleotides. Antisense RNA molecules can be obtained by in vitro or in vivo transcription of a DNA sequence encoding the RNA. This DNA sequence has been integrated downstream of the RNA polymerase promoter of the vector. In order to increase the stability of the nucleic acid molecule, it can be modified in a variety of ways, such as increasing the sequence length on both sides, and the linkage between ribonucleosides using phosphate thioester or peptide bonds instead of phosphodiester bonds.
编码人含 ATP/GTP结合结构域的核转换蛋白 10的多核苷酸可用于与人含 ATP / GTP 结合结构域的核转换蛋白 10 的相关疾病的诊断。 编码人含 ATP/GTP 结合结构域的核 转换蛋白 10的多核苷酸可用于检测人含 ATP/GTP结合结构域的核转换蛋白 10 的表达 与否或在疾病状态下人含 ATP/GTP 结合结构域的核转换蛋白 10 的异常表达。 如编码 人含 ATP/GTP 结合结构域的核转换蛋白 10 的 DNA序列可用于对活检标本进行杂交以 判断人含 ATP/GTP结合结构域的核转换蛋白 10 的表达状况。 杂交技术包括 Southern 印迹法, Northern 印迹法、 原位杂交等。 这些技术方法都是公开的成熟技木, 相关的 试剂盒都可从商业途径得到。 本发明的多核苷酸的一部分或全部可作为探针固定在微 阵列(Microarray)或 DNA 芯片(又称为 "基因芯片" )上, 用于分析组织中基因的差异 表达分析和基因诊断。 用人含 ATP/GTP 结合结构域的核转换蛋白 10 特异的引物进行 RNA-聚合酶链反应(RT- PCR)体外扩增也可检测人含 ATP/GTP 结合结构域的核转换蛋白 10的转录产物。 检测人含 ATP/GTP 结合结构域的核转换蛋白 10 基因的突变也可用于诊断人含 ATP/GTP结合结构域的核转换蛋白 10相关的疾病。 人含 ATP/GTP结合结构域的核转换 蛋白 10 突变的形式包括与正常野生型人含 ATP/GTP 结合结构域的核转换蛋白 10 DNA 序列相比的点突变、 易位、 缺失、 重组和其它任何异常等。 可用已有的技术如 Southern 印迹法、 DNA 序列分析、 PCR 和原位杂交检测突变。 另外, 突变有可能影响蛋白的表 达, 因此用 Northern印迹法、 Western印迹法可间接判断基因有无突变。 Polynucleotides encoding human ATP / GTP binding domain-containing nuclear conversion protein 10 can be used for the diagnosis of diseases related to human ATP / GTP binding domain-containing nuclear conversion protein 10. Polynucleotides encoding human ATP / GTP binding domain-containing nucleoproteins 10 can be used to detect the expression of human ATP / GTP binding domain-containing nucleoproteins 10 or human ATP / GTP binding structures in disease states Domain of Aberrant Expression of Nuclear Conversion Protein 10 For example, a DNA sequence encoding a human ATP / GTP binding domain-containing nuclear transfer protein 10 can be used to hybridize biopsy specimens to determine the expression of human ATP / GTP binding domain-containing nuclear transfer protein 10. Hybridization techniques include Southern blotting, Northern blotting, and in situ hybridization. These techniques and methods are publicly available mature techniques, and related kits are commercially available. Some or all of the polynucleotides of the present invention can be used as probes to be fixed on a microarray or a DNA chip (also referred to as a "gene chip") for analyzing differential expression analysis and gene diagnosis of genes in tissue. Human ATP / GTP binding domain-containing nucleoprotein 10 specific primers for RNA-polymerase chain reaction (RT-PCR) in vitro amplification can also detect human ATP / GTP binding domain-containing nucleoprotein 10 transcripts . Detection of mutations in the human ATP / GTP-binding domain-containing nuclear transfer protein 10 gene can also be used to diagnose human ATP / GTP-binding domain-containing nuclear transfer protein 10-related diseases. Human ATP / GTP binding domain-containing nuclear conversion protein 10 mutant forms include point mutations, translocations, deletions, recombinations, and others compared to normal wild-type human ATP / GTP binding domain-containing nuclear conversion protein 10 DNA sequences Any exceptions etc. Mutations can be detected using existing techniques such as Southern blotting, DNA sequence analysis, PCR and in situ hybridization. In addition, mutations may affect protein expression, so Northern blotting and Western blotting can be used to indirectly determine whether a gene is mutated.
本发明的序列对染色体鉴定也是有价值的。 该序列会特异性地针对某条人染色 体具体位置且并可以与其杂交。 目前, 需要鉴定染色体上的各基因的具体位点。 现 在, 只有很少的基于实际序列数据(重复多态性)的染色体标记物可用于标记染色体 位置。 根据本发明, 为了将这些序列与疾病相关基因相关联, 其重要的第一步就是 将这些 DNA序列定位于染色体上。 The sequences of the invention are also valuable for chromosome identification. This sequence will specifically target a specific position of a human chromosome and can hybridize with it. Currently, specific sites for each gene on the chromosome need to be identified. Currently, only a few chromosome markers based on actual sequence data (repeating polymorphisms) can be used to mark chromosome positions. According to the present invention, in order to associate these sequences with disease-related genes, an important first step is to locate these DNA sequences on a chromosome.
简而言之, 根据 cDNA制备 PCR引物(优选 15- 35bp) , 可以将序列定位于染色体上。 然后, 将这些引物用于 PCR筛选含各条人染色体的体细胞杂合细胞。 只有那些含有相 应于引物的人基因的杂合细胞会产生扩增的片段。 In short, PCR primers (preferably 15-35bp) are prepared based on cDNA, and the sequences can be mapped on chromosomes. These primers were then used for PCR screening of somatic hybrid cells containing individual human chromosomes. Only those hybrid cells containing human genes corresponding to the primers will produce amplified fragments.
体细胞杂合细胞的 PCR定位法, 是将 DNA定位到具体染色体的快捷方法。 使用本 发明的寡核苷酸引物, 通过类似方法, 可利用一组来自特定染色体的片段或大量基 因组克隆而实现亚定位。 可用于染色体定位的其它类似策略包括原位杂交、 用标记 的流式分选的染色体预筛选和杂交预选, 从而构建染色体特异的 cDNA库。 PCR localization of somatic hybrid cells is a quick way to localize DNA to specific chromosomes. Using the oligonucleotide primers of the present invention, in a similar manner, sublocalization can be achieved using a set of fragments from a specific chromosome or a large number of genomic clones. Other similar strategies that can be used for chromosomal localization include in situ hybridization, chromosome pre-screening with labeled flow sorting, and hybrid pre-selection to construct chromosome-specific cDNA libraries.
将 cDNA克隆与中期染色体进行荧光原位杂交(FISH) , 可以在一个步骤中精确地 进行染色体定位。此技术的综述,参见 Verma等, Human Chromosomes: a Manual of Basic Techniques, Pergamon Press, New York (1988)。 Fluorescent in situ hybridization (FISH) of cDNA clones with metaphase chromosomes allows precise chromosomal localization in one step. For a review of this technique, see Verma et al., Human Chromosomes: a Manual of Basic Techniques, Pergamon Press, New York (1988).
一旦序列被定位到准确的染色体位置, 此序列在染色体上的物理位置就可以与 基因图数据相关联。 这些数据可见于例如, V. Mckusick,Mendelian Inheritance in Man (可通过与 Johns Hopkins University Welch Medical Library联机获得)。 然后 可通过连锁分析, 确定基因与业已定位到染色体区域上的疾病之间的关系。 Once the sequence is located at the exact chromosomal location, the physical location of the sequence on the chromosome can be correlated with the genetic map data. These data can be found in, for example, V. Mckusick, Mendelian Inheritance in Man (available online with Johns Hopkins University Welch Medical Library). Linkage analysis can then be used to determine the relationship between genes and diseases that have been mapped to chromosomal regions.
接着, 需要测定患病和未患病个体间的 cDNA或基因组序列差异。 如果在一些^ 所有的患病个体中观察到某突变, 而该突变在任何正常个体中未观察到, 则该突变 可能是疾病的病因。 比较患病和未患病个体, 通常涉及首先寻找染色体中结构的变 化, 如从染色体水平可见的或用基于 cDNA序列的 PCR可检测的缺失或易位。 根据目前 的物理作图和基因定位技术的分辨能力, 被精确定位至与疾病有关的染色体区域的 cDNA , 可以是 50至 500个潜在致病基因间之一种(假定 1兆碱基作图分辨能力和每 20kb 对应于一个基因)。 Next, the differences in cDNA or genomic sequences between the affected and unaffected individuals need to be determined. If a mutation is observed in some diseased individuals and the mutation is not observed in any normal individuals, the mutation may be the cause of the disease. Comparing affected and unaffected individuals usually involves first looking for structural changes in the chromosome, such as deletions or translocations that are visible at the chromosomal level or detectable using cDNA sequence-based PCR. Based on the resolution capabilities of current physical mapping and gene mapping technologies, they are accurately mapped to disease-related chromosomal regions. cDNA can be one of between 50 and 500 potentially pathogenic genes (assuming 1 megabase mapping resolution and one gene per 20 kb).
可以将本发明的多肽、 多核苷酸及其模拟物、 激动剂、 拮抗剂和抑制剂与合适的 药物载体组合后使用。 这些载体可以是水、 葡萄糖、 乙醇、 盐类、 缓冲液、 甘油以及 它们的组合。 组合物包含安全有效量的多肽或拮抗剂以及不影响药物效果的载体和赋 形剂。 这些组合物可以作为药物用于疾病治疗。 The polypeptides, polynucleotides and mimetics, agonists, antagonists and inhibitors of the present invention can be used in combination with a suitable pharmaceutical carrier. These carriers can be water, glucose, ethanol, salts, buffers, glycerol, and combinations thereof. The composition contains a safe and effective amount of the polypeptide or antagonist, and carriers and excipients that do not affect the effect of the drug. These compositions can be used as drugs for the treatment of diseases.
本发明还提供含有一种或多种容器的药盒或试剂盒, 容器中装有一种或多种本发 明的药用组合物成分。 与这些容器一起, 可以有由制造、 使用或销售药品或生物制品 的政府管理机构所给出的指示性提示, 该提示反映出生产、 使用或销售的政府管理机 构许可其在人体上施用。 此外, 本发明的多肽可以与其它的治疗化合物结合使用。 药物组合物可以以方便的方式给药, 如通过局部、 静脉内、 腹膜内、 肌内、 皮下、 鼻 内或皮内的给药途径。 人含 ATP/GTP结合结构域的核转换蛋白 1 0以有效地治疗和 /或预 防具体的适应症的量来给药。 施用于患者的人含 ATP/GTP结合结构域的核转换蛋白 1 0 的量和剂量范围将取决于许多因素, 如给药方式、 待治疗者的健康条件和诊断医生的 判断。 The invention also provides a kit or kit containing one or more containers containing one or more ingredients of the pharmaceutical composition of the invention. Along with these containers, there may be instructional instructions given by government agencies that manufacture, use, or sell pharmaceuticals or biological products, which prompts permission for administration on the human body by government agencies that manufacture, use, or sell them. In addition, the polypeptides of the invention can be used in combination with other therapeutic compounds. The pharmaceutical composition can be administered in a convenient manner, such as by a topical, intravenous, intraperitoneal, intramuscular, subcutaneous, intranasal or intradermal route of administration. Human ATP / GTP binding domain-containing nuclear conversion protein 10 is administered in an amount effective to treat and / or prevent a specific indication. The amount and dose range of human ATP / GTP binding domain-containing nuclear conversion protein 10 administered to a patient will depend on many factors, such as the mode of administration, the health conditions of the person to be treated, and the judgment of the diagnostician.
Claims
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| AU16890/01A AU1689001A (en) | 1999-11-29 | 2000-11-27 | A novel polypeptide - human atp/gtp binding domain-containing transition nuclearprotein 10 and polynucleotide encoding the same |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| CN 99124143 CN1297927A (en) | 1999-11-29 | 1999-11-29 | Human transition protein 10 containing ATP/GTP binding structure domain as one new kind of polypeptide and polynucleotides encoding this polypeptide |
| CN99124143.6 | 1999-11-29 |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| WO2001040297A1 true WO2001040297A1 (en) | 2001-06-07 |
Family
ID=5283235
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/CN2000/000509 Ceased WO2001040297A1 (en) | 1999-11-29 | 2000-11-27 | A novel polypeptide - human atp/gtp binding domain-containing transition nuclear protein 10 and a polynucleotide encoding the same |
Country Status (3)
| Country | Link |
|---|---|
| CN (1) | CN1297927A (en) |
| AU (1) | AU1689001A (en) |
| WO (1) | WO2001040297A1 (en) |
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN104488112A (en) * | 2012-07-23 | 2015-04-01 | 株式会社Lg化学 | Rectangular battery cell with built-in pouch cell |
-
1999
- 1999-11-29 CN CN 99124143 patent/CN1297927A/en active Pending
-
2000
- 2000-11-27 WO PCT/CN2000/000509 patent/WO2001040297A1/en not_active Ceased
- 2000-11-27 AU AU16890/01A patent/AU1689001A/en not_active Abandoned
Non-Patent Citations (3)
| Title |
|---|
| BIOL. REPROD., vol. 48, no. 3, 1993, pages 522 - 529 * |
| EXP. CELL RES., vol. 210, no. 1, 1994, pages 39 - 45 * |
| J. ANDROL., vol. 20, no. 6, 1999, pages 747 - 754 * |
Cited By (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN104488112A (en) * | 2012-07-23 | 2015-04-01 | 株式会社Lg化学 | Rectangular battery cell with built-in pouch cell |
| CN104488112B (en) * | 2012-07-23 | 2017-09-08 | 株式会社Lg 化学 | Including bag-shaped unit and it is transformed into prismatic battery unit |
Also Published As
| Publication number | Publication date |
|---|---|
| AU1689001A (en) | 2001-06-12 |
| CN1297927A (en) | 2001-06-06 |
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