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WO2000015847A3 - Genomic knowledge discovery - Google Patents

Genomic knowledge discovery Download PDF

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Publication number
WO2000015847A3
WO2000015847A3 PCT/US1999/020449 US9920449W WO0015847A3 WO 2000015847 A3 WO2000015847 A3 WO 2000015847A3 US 9920449 W US9920449 W US 9920449W WO 0015847 A3 WO0015847 A3 WO 0015847A3
Authority
WO
WIPO (PCT)
Prior art keywords
genes
knowledge
knowledge discovery
databases
repeating
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US1999/020449
Other languages
French (fr)
Other versions
WO2000015847A2 (en
Inventor
Keith Leroy Steward
Qin Shi
Michael Contento Cariaso
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Ore Pharmaceuticals Inc
Original Assignee
Ore Pharmaceuticals Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Ore Pharmaceuticals Inc filed Critical Ore Pharmaceuticals Inc
Priority to AU62440/99A priority Critical patent/AU6244099A/en
Publication of WO2000015847A2 publication Critical patent/WO2000015847A2/en
Publication of WO2000015847A3 publication Critical patent/WO2000015847A3/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics

Landscapes

  • Engineering & Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Medical Informatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Theoretical Computer Science (AREA)
  • Databases & Information Systems (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Data Mining & Analysis (AREA)
  • Bioethics (AREA)
  • Chemical & Material Sciences (AREA)
  • Artificial Intelligence (AREA)
  • Software Systems (AREA)
  • Public Health (AREA)
  • Evolutionary Computation (AREA)
  • Epidemiology (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Organic Chemistry (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)

Abstract

A method of genomic data discovery, comprising: (a) providing a gene data base comprising at least 10 genes; (b) selecting one of said at least 10 genes; (c) discovering knowledge for said selected gene; (d) repeating said (b) and (c) for a plurality of said genes; and (e) repeating said (b)-(d) a plurality of times such that knowledge is discovered substantially in parallel for all the selected genes. Preferably, (b)-(e) are performed substantially without human intervention. Preferably, knowledge discovery utilizes a large number of databases and inference rules to analyze data queried from the databases.
PCT/US1999/020449 1998-09-11 1999-09-08 Genomic knowledge discovery Ceased WO2000015847A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU62440/99A AU6244099A (en) 1998-09-11 1999-09-08 Genomic knowledge discovery

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US10003098P 1998-09-11 1998-09-11
US60/100,030 1998-09-11

Publications (2)

Publication Number Publication Date
WO2000015847A2 WO2000015847A2 (en) 2000-03-23
WO2000015847A3 true WO2000015847A3 (en) 2000-05-25

Family

ID=22277760

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US1999/020449 Ceased WO2000015847A2 (en) 1998-09-11 1999-09-08 Genomic knowledge discovery

Country Status (2)

Country Link
AU (1) AU6244099A (en)
WO (1) WO2000015847A2 (en)

Families Citing this family (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5989835A (en) 1997-02-27 1999-11-23 Cellomics, Inc. System for cell-based screening
ATE292822T1 (en) 1998-11-13 2005-04-15 Cellomics Inc METHOD AND SYSTEM FOR EFFICIENTLY OBTAINING AND STORING EXPERIMENTAL DATA
CA2372163A1 (en) * 1999-05-19 2000-11-23 Whitehead Institute For Biomedical Research A method and relational database management system for storing, comparing, and displaying results produced by analyses of gene array data
CA2396495A1 (en) 2000-01-25 2001-08-02 Cellomics, Inc. Method and system for automated inference creation of physico-chemical interaction knowledge from databases of co-occurrence data
US6813615B1 (en) 2000-09-06 2004-11-02 Cellomics, Inc. Method and system for interpreting and validating experimental data with automated reasoning
US6768982B1 (en) 2000-09-06 2004-07-27 Cellomics, Inc. Method and system for creating and using knowledge patterns
US8719341B2 (en) * 2005-12-27 2014-05-06 Qurio Holdings, Inc. System and method for accessing and managing mobile device metadata
US7859560B1 (en) 2005-12-27 2010-12-28 Qurio Holdings, Inc. System and method for establishing a local chat session
WO2013141845A1 (en) * 2012-03-20 2013-09-26 Pathway Genomics Genomics-based alerting systems
US9953137B2 (en) 2012-07-06 2018-04-24 Nant Holdings Ip, Llc Healthcare analysis stream management
CN107357893A (en) * 2017-07-07 2017-11-17 吉林农业科技学院 A kind of cereal crops harmful organism the expert system for diagnosis

Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5463564A (en) * 1994-09-16 1995-10-31 3-Dimensional Pharmaceuticals, Inc. System and method of automatically generating chemical compounds with desired properties
WO1996023265A1 (en) * 1995-01-23 1996-08-01 British Telecommunications Public Limited Company Methods and/or systems for accessing information
US5634053A (en) * 1995-08-29 1997-05-27 Hughes Aircraft Company Federated information management (FIM) system and method for providing data site filtering and translation for heterogeneous databases
WO1997031127A1 (en) * 1996-02-26 1997-08-28 Pharmacopeia, Inc. Technique for representing combinatorial chemistry libraries resulting from selective combination of synthons
US5692107A (en) * 1994-03-15 1997-11-25 Lockheed Missiles & Space Company, Inc. Method for generating predictive models in a computer system
US5787425A (en) * 1996-10-01 1998-07-28 International Business Machines Corporation Object-oriented data mining framework mechanism
US5933818A (en) * 1997-06-02 1999-08-03 Electronic Data Systems Corporation Autonomous knowledge discovery system and method

Patent Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5692107A (en) * 1994-03-15 1997-11-25 Lockheed Missiles & Space Company, Inc. Method for generating predictive models in a computer system
US5463564A (en) * 1994-09-16 1995-10-31 3-Dimensional Pharmaceuticals, Inc. System and method of automatically generating chemical compounds with desired properties
WO1996023265A1 (en) * 1995-01-23 1996-08-01 British Telecommunications Public Limited Company Methods and/or systems for accessing information
US5634053A (en) * 1995-08-29 1997-05-27 Hughes Aircraft Company Federated information management (FIM) system and method for providing data site filtering and translation for heterogeneous databases
WO1997031127A1 (en) * 1996-02-26 1997-08-28 Pharmacopeia, Inc. Technique for representing combinatorial chemistry libraries resulting from selective combination of synthons
US5787425A (en) * 1996-10-01 1998-07-28 International Business Machines Corporation Object-oriented data mining framework mechanism
US5933818A (en) * 1997-06-02 1999-08-03 Electronic Data Systems Corporation Autonomous knowledge discovery system and method

Non-Patent Citations (3)

* Cited by examiner, † Cited by third party
Title
ECKMAN B A ET AL: "The Merck Gene Index browser: an extensible data integration system for gene finding, gene characterization and EST data mining", BIOINFORMATICS, vol. 14, no. 1, February 1998 (1998-02-01), pages 2 - 13, XP002132418 *
MIYANO S: "Genome Informatics: New Frontiers of Computer Science and Biosciences", PROCEEDINGS OF THE INTERNATIONAL SYMPOSIUM ON COOPERATIVE DATABASE SYSTEMS FOR ADVANCED APPLICATIONS, 5 December 1996 (1996-12-05) - 7 December 1996 (1996-12-07), Kyoto, Japan, pages 12 - 21, XP000889796 *
SATOU K ET AL: "Finding Association Rules on Heterogeneous Genome Data", PROCEEDINGS OF THE PACIFIC SYMPOSIUM BIOCOMPUTING '97, 6 January 1997 (1997-01-06) - 9 January 1997 (1997-01-09), Maui, HI, USA, pages 397 - 408, XP000889673 *

Also Published As

Publication number Publication date
AU6244099A (en) 2000-04-03
WO2000015847A2 (en) 2000-03-23

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