US20050256174A1 - Raf kinase inhibitors - Google Patents
Raf kinase inhibitors Download PDFInfo
- Publication number
- US20050256174A1 US20050256174A1 US11/149,332 US14933205A US2005256174A1 US 20050256174 A1 US20050256174 A1 US 20050256174A1 US 14933205 A US14933205 A US 14933205A US 2005256174 A1 US2005256174 A1 US 2005256174A1
- Authority
- US
- United States
- Prior art keywords
- mmol
- methyl
- thiophene
- carboxylic acid
- butyl
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
- 102000009929 raf Kinases Human genes 0.000 title claims abstract description 19
- 108010077182 raf Kinases Proteins 0.000 title claims abstract description 19
- 229940043355 kinase inhibitor Drugs 0.000 title 1
- 239000003757 phosphotransferase inhibitor Substances 0.000 title 1
- 238000000034 method Methods 0.000 claims abstract description 55
- 150000001875 compounds Chemical class 0.000 claims abstract description 39
- 230000001404 mediated effect Effects 0.000 claims abstract description 6
- 230000010261 cell growth Effects 0.000 claims description 4
- 206010028980 Neoplasm Diseases 0.000 abstract description 17
- 150000003672 ureas Chemical class 0.000 abstract 1
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- FJDQFPXHSGXQBY-UHFFFAOYSA-L caesium carbonate Chemical compound [Cs+].[Cs+].[O-]C([O-])=O FJDQFPXHSGXQBY-UHFFFAOYSA-L 0.000 description 1
- 229910000024 caesium carbonate Inorganic materials 0.000 description 1
- 235000010216 calcium carbonate Nutrition 0.000 description 1
- FLSGBKGQQKUEFP-UHFFFAOYSA-N carbamic acid;methanamine Chemical compound NC.NC(O)=O FLSGBKGQQKUEFP-UHFFFAOYSA-N 0.000 description 1
- 235000011089 carbon dioxide Nutrition 0.000 description 1
- 229910002091 carbon monoxide Inorganic materials 0.000 description 1
- 239000006143 cell culture medium Substances 0.000 description 1
- 230000004663 cell proliferation Effects 0.000 description 1
- 229960000541 cetyl alcohol Drugs 0.000 description 1
- KXZJHVJKXJLBKO-UHFFFAOYSA-N chembl1408157 Chemical compound N=1C2=CC=CC=C2C(C(=O)O)=CC=1C1=CC=C(O)C=C1 KXZJHVJKXJLBKO-UHFFFAOYSA-N 0.000 description 1
- 239000003153 chemical reaction reagent Substances 0.000 description 1
- 230000004186 co-expression Effects 0.000 description 1
- 229940110456 cocoa butter Drugs 0.000 description 1
- 235000019868 cocoa butter Nutrition 0.000 description 1
- 210000001072 colon Anatomy 0.000 description 1
- 201000010897 colon adenocarcinoma Diseases 0.000 description 1
- 208000029742 colonic neoplasm Diseases 0.000 description 1
- 239000012230 colorless oil Substances 0.000 description 1
- 239000003184 complementary RNA Substances 0.000 description 1
- 239000012141 concentrate Substances 0.000 description 1
- 235000008504 concentrate Nutrition 0.000 description 1
- 239000008120 corn starch Substances 0.000 description 1
- 230000002596 correlated effect Effects 0.000 description 1
- 230000000875 corresponding effect Effects 0.000 description 1
- 230000001351 cycling effect Effects 0.000 description 1
- 230000001419 dependent effect Effects 0.000 description 1
- 238000011161 development Methods 0.000 description 1
- 235000005911 diet Nutrition 0.000 description 1
- 230000037213 diet Effects 0.000 description 1
- IJKVHSBPTUYDLN-UHFFFAOYSA-N dihydroxy(oxo)silane Chemical compound O[Si](O)=O IJKVHSBPTUYDLN-UHFFFAOYSA-N 0.000 description 1
- VAYGXNSJCAHWJZ-UHFFFAOYSA-N dimethyl sulfate Chemical compound COS(=O)(=O)OC VAYGXNSJCAHWJZ-UHFFFAOYSA-N 0.000 description 1
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 description 1
- 239000012153 distilled water Substances 0.000 description 1
- 239000003937 drug carrier Substances 0.000 description 1
- 239000000890 drug combination Substances 0.000 description 1
- 238000001962 electrophoresis Methods 0.000 description 1
- 239000003974 emollient agent Substances 0.000 description 1
- 239000003995 emulsifying agent Substances 0.000 description 1
- OAYLNYINCPYISS-UHFFFAOYSA-N ethyl acetate;hexane Chemical compound CCCCCC.CCOC(C)=O OAYLNYINCPYISS-UHFFFAOYSA-N 0.000 description 1
- RIFGWPKJUGCATF-UHFFFAOYSA-N ethyl chloroformate Chemical compound CCOC(Cl)=O RIFGWPKJUGCATF-UHFFFAOYSA-N 0.000 description 1
- 230000029142 excretion Effects 0.000 description 1
- 238000000605 extraction Methods 0.000 description 1
- 238000002290 gas chromatography-mass spectrometry Methods 0.000 description 1
- 210000001035 gastrointestinal tract Anatomy 0.000 description 1
- 230000014509 gene expression Effects 0.000 description 1
- 102000034356 gene-regulatory proteins Human genes 0.000 description 1
- 108091006104 gene-regulatory proteins Proteins 0.000 description 1
- 238000007429 general method Methods 0.000 description 1
- 239000003365 glass fiber Substances 0.000 description 1
- 239000008103 glucose Substances 0.000 description 1
- 229940074045 glyceryl distearate Drugs 0.000 description 1
- 229940075507 glyceryl monostearate Drugs 0.000 description 1
- 239000008187 granular material Substances 0.000 description 1
- 230000036541 health Effects 0.000 description 1
- 125000001072 heteroaryl group Chemical group 0.000 description 1
- 125000000623 heterocyclic group Chemical group 0.000 description 1
- FBPFZTCFMRRESA-UHFFFAOYSA-N hexane-1,2,3,4,5,6-hexol Chemical compound OCC(O)C(O)C(O)C(O)CO FBPFZTCFMRRESA-UHFFFAOYSA-N 0.000 description 1
- 238000013537 high throughput screening Methods 0.000 description 1
- 239000008240 homogeneous mixture Substances 0.000 description 1
- 238000005984 hydrogenation reaction Methods 0.000 description 1
- 239000001866 hydroxypropyl methyl cellulose Substances 0.000 description 1
- 235000010979 hydroxypropyl methyl cellulose Nutrition 0.000 description 1
- 229920003088 hydroxypropyl methyl cellulose Polymers 0.000 description 1
- UFVKGYZPFZQRLF-UHFFFAOYSA-N hydroxypropyl methyl cellulose Chemical compound OC1C(O)C(OC)OC(CO)C1OC1C(O)C(O)C(OC2C(C(O)C(OC3C(C(O)C(O)C(CO)O3)O)C(CO)O2)O)C(CO)O1 UFVKGYZPFZQRLF-UHFFFAOYSA-N 0.000 description 1
- 238000005462 in vivo assay Methods 0.000 description 1
- 238000010348 incorporation Methods 0.000 description 1
- 239000003701 inert diluent Substances 0.000 description 1
- 238000001802 infusion Methods 0.000 description 1
- 238000002347 injection Methods 0.000 description 1
- 239000007924 injection Substances 0.000 description 1
- 238000007918 intramuscular administration Methods 0.000 description 1
- 238000001990 intravenous administration Methods 0.000 description 1
- IQPQWNKOIGAROB-UHFFFAOYSA-N isocyanate group Chemical group [N-]=C=O IQPQWNKOIGAROB-UHFFFAOYSA-N 0.000 description 1
- NLYAJNPCOHFWQQ-UHFFFAOYSA-N kaolin Chemical compound O.O.O=[Al]O[Si](=O)O[Si](=O)O[Al]=O NLYAJNPCOHFWQQ-UHFFFAOYSA-N 0.000 description 1
- 238000000021 kinase assay Methods 0.000 description 1
- 239000008101 lactose Substances 0.000 description 1
- 239000012669 liquid formulation Substances 0.000 description 1
- 210000004072 lung Anatomy 0.000 description 1
- 229910001629 magnesium chloride Inorganic materials 0.000 description 1
- 235000019359 magnesium stearate Nutrition 0.000 description 1
- 238000004949 mass spectrometry Methods 0.000 description 1
- 239000002609 medium Substances 0.000 description 1
- 238000002844 melting Methods 0.000 description 1
- 230000008018 melting Effects 0.000 description 1
- 239000012528 membrane Substances 0.000 description 1
- 125000000956 methoxy group Chemical group [H]C([H])([H])O* 0.000 description 1
- WCYWZMWISLQXQU-UHFFFAOYSA-N methyl Chemical compound [CH3] WCYWZMWISLQXQU-UHFFFAOYSA-N 0.000 description 1
- GZHUMEPCJIYGOG-UHFFFAOYSA-N methyl 5-(hydroxymethyl)-3-[(4-methylphenyl)carbamoylamino]thiophene-2-carboxylate Chemical compound S1C(CO)=CC(NC(=O)NC=2C=CC(C)=CC=2)=C1C(=O)OC GZHUMEPCJIYGOG-UHFFFAOYSA-N 0.000 description 1
- PBFZVARLSANULU-UHFFFAOYSA-N methyl 5-tert-butyl-1-methyl-3-nitropyrrole-2-carboxylate Chemical compound COC(=O)C1=C([N+]([O-])=O)C=C(C(C)(C)C)N1C PBFZVARLSANULU-UHFFFAOYSA-N 0.000 description 1
- DVMWBXHQQKQEEE-UHFFFAOYSA-N methyl 5-tert-butyl-3-isocyanothiophene-2-carboxylate Chemical compound COC(=O)C=1SC(C(C)(C)C)=CC=1[N+]#[C-] DVMWBXHQQKQEEE-UHFFFAOYSA-N 0.000 description 1
- UBRPDRSWIRZWQG-UHFFFAOYSA-N methyl 5-tert-butylfuran-2-carboxylate Chemical compound COC(=O)C1=CC=C(C(C)(C)C)O1 UBRPDRSWIRZWQG-UHFFFAOYSA-N 0.000 description 1
- 229920000609 methyl cellulose Polymers 0.000 description 1
- ANGDWNBGPBMQHW-UHFFFAOYSA-N methyl cyanoacetate Chemical compound COC(=O)CC#N ANGDWNBGPBMQHW-UHFFFAOYSA-N 0.000 description 1
- 150000004702 methyl esters Chemical class 0.000 description 1
- 150000003956 methylamines Chemical class 0.000 description 1
- 239000001923 methylcellulose Substances 0.000 description 1
- 235000010981 methylcellulose Nutrition 0.000 description 1
- 238000002156 mixing Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 208000025113 myeloid leukemia Diseases 0.000 description 1
- UFYFLBNWAMCOML-UHFFFAOYSA-N n-methyl-1h-pyrazol-5-amine Chemical compound CNC1=CC=NN1 UFYFLBNWAMCOML-UHFFFAOYSA-N 0.000 description 1
- 125000004123 n-propyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- 150000002828 nitro derivatives Chemical class 0.000 description 1
- 231100000344 non-irritating Toxicity 0.000 description 1
- 238000004305 normal phase HPLC Methods 0.000 description 1
- QIQXTHQIDYTFRH-UHFFFAOYSA-N octadecanoic acid Chemical compound CCCCCCCCCCCCCCCCCC(O)=O QIQXTHQIDYTFRH-UHFFFAOYSA-N 0.000 description 1
- OQCDKBAXFALNLD-UHFFFAOYSA-N octadecanoic acid Natural products CCCCCCCC(C)CCCCCCCCC(O)=O OQCDKBAXFALNLD-UHFFFAOYSA-N 0.000 description 1
- 229940046166 oligodeoxynucleotide Drugs 0.000 description 1
- 231100000590 oncogenic Toxicity 0.000 description 1
- 230000002246 oncogenic effect Effects 0.000 description 1
- 239000010502 orange oil Substances 0.000 description 1
- YJVFFLUZDVXJQI-UHFFFAOYSA-L palladium(ii) acetate Chemical compound [Pd+2].CC([O-])=O.CC([O-])=O YJVFFLUZDVXJQI-UHFFFAOYSA-L 0.000 description 1
- 210000000496 pancreas Anatomy 0.000 description 1
- 239000012188 paraffin wax Substances 0.000 description 1
- 230000037361 pathway Effects 0.000 description 1
- 239000012071 phase Substances 0.000 description 1
- 125000001997 phenyl group Chemical group [H]C1=C([H])C([H])=C(*)C([H])=C1[H] 0.000 description 1
- DGTNSSLYPYDJGL-UHFFFAOYSA-N phenyl isocyanate Chemical compound O=C=NC1=CC=CC=C1 DGTNSSLYPYDJGL-UHFFFAOYSA-N 0.000 description 1
- 229940080469 phosphocellulose Drugs 0.000 description 1
- 229920000573 polyethylene Polymers 0.000 description 1
- 229920001223 polyethylene glycol Polymers 0.000 description 1
- 239000000244 polyoxyethylene sorbitan monooleate Substances 0.000 description 1
- 235000010482 polyoxyethylene sorbitan monooleate Nutrition 0.000 description 1
- 229920000053 polysorbate 80 Polymers 0.000 description 1
- 239000001267 polyvinylpyrrolidone Substances 0.000 description 1
- 235000013855 polyvinylpyrrolidone Nutrition 0.000 description 1
- 229920000036 polyvinylpyrrolidone Polymers 0.000 description 1
- 235000011056 potassium acetate Nutrition 0.000 description 1
- 239000000843 powder Substances 0.000 description 1
- 238000012746 preparative thin layer chromatography Methods 0.000 description 1
- 230000002335 preservative effect Effects 0.000 description 1
- 230000035755 proliferation Effects 0.000 description 1
- 239000012460 protein solution Substances 0.000 description 1
- DOYOPBSXEIZLRE-UHFFFAOYSA-N pyrrole-3-carboxylic acid Natural products OC(=O)C=1C=CNC=1 DOYOPBSXEIZLRE-UHFFFAOYSA-N 0.000 description 1
- 125000000168 pyrrolyl group Chemical group 0.000 description 1
- 239000000376 reactant Substances 0.000 description 1
- 210000000664 rectum Anatomy 0.000 description 1
- 230000002829 reductive effect Effects 0.000 description 1
- 230000000284 resting effect Effects 0.000 description 1
- CVHZOJJKTDOEJC-UHFFFAOYSA-N saccharin Chemical compound C1=CC=C2C(=O)NS(=O)(=O)C2=C1 CVHZOJJKTDOEJC-UHFFFAOYSA-N 0.000 description 1
- 229940081974 saccharin Drugs 0.000 description 1
- 235000019204 saccharin Nutrition 0.000 description 1
- 239000000901 saccharin and its Na,K and Ca salt Substances 0.000 description 1
- 239000008159 sesame oil Substances 0.000 description 1
- 235000011803 sesame oil Nutrition 0.000 description 1
- 239000002002 slurry Substances 0.000 description 1
- 235000010413 sodium alginate Nutrition 0.000 description 1
- 239000000661 sodium alginate Substances 0.000 description 1
- 229940005550 sodium alginate Drugs 0.000 description 1
- 229910001467 sodium calcium phosphate Inorganic materials 0.000 description 1
- CHQMHPLRPQMAMX-UHFFFAOYSA-L sodium persulfate Substances [Na+].[Na+].[O-]S(=O)(=O)OOS([O-])(=O)=O CHQMHPLRPQMAMX-UHFFFAOYSA-L 0.000 description 1
- 239000001488 sodium phosphate Substances 0.000 description 1
- 239000000600 sorbitol Substances 0.000 description 1
- 238000001179 sorption measurement Methods 0.000 description 1
- 230000003595 spectral effect Effects 0.000 description 1
- 239000007921 spray Substances 0.000 description 1
- 239000007858 starting material Substances 0.000 description 1
- 239000008117 stearic acid Substances 0.000 description 1
- 239000011550 stock solution Substances 0.000 description 1
- 239000007929 subcutaneous injection Substances 0.000 description 1
- 238000010254 subcutaneous injection Methods 0.000 description 1
- 239000000758 substrate Substances 0.000 description 1
- 239000011593 sulfur Substances 0.000 description 1
- 229910052717 sulfur Inorganic materials 0.000 description 1
- QAOWNCQODCNURD-UHFFFAOYSA-N sulfuric acid Substances OS(O)(=O)=O QAOWNCQODCNURD-UHFFFAOYSA-N 0.000 description 1
- 239000000829 suppository Substances 0.000 description 1
- 230000002459 sustained effect Effects 0.000 description 1
- 235000020357 syrup Nutrition 0.000 description 1
- 239000006188 syrup Substances 0.000 description 1
- 239000000454 talc Substances 0.000 description 1
- 235000012222 talc Nutrition 0.000 description 1
- 229910052623 talc Inorganic materials 0.000 description 1
- NBRKLOOSMBRFMH-UHFFFAOYSA-N tert-butyl chloride Chemical compound CC(C)(C)Cl NBRKLOOSMBRFMH-UHFFFAOYSA-N 0.000 description 1
- YLQBMQCUIZJEEH-UHFFFAOYSA-N tetrahydrofuran Natural products C=1C=COC=1 YLQBMQCUIZJEEH-UHFFFAOYSA-N 0.000 description 1
- 238000002560 therapeutic procedure Methods 0.000 description 1
- 239000002562 thickening agent Substances 0.000 description 1
- YOJJQORBOZKLCC-UHFFFAOYSA-N thiophen-2-ylurea Chemical class NC(=O)NC1=CC=CS1 YOJJQORBOZKLCC-UHFFFAOYSA-N 0.000 description 1
- OQNKBMATPLZSST-UHFFFAOYSA-N thiophen-3-ylurea Chemical class NC(=O)NC=1C=CSC=1 OQNKBMATPLZSST-UHFFFAOYSA-N 0.000 description 1
- QERYCTSHXKAMIS-UHFFFAOYSA-N thiophene-2-carboxylic acid Chemical compound OC(=O)C1=CC=CS1 QERYCTSHXKAMIS-UHFFFAOYSA-N 0.000 description 1
- 210000001685 thyroid gland Anatomy 0.000 description 1
- 125000000026 trimethylsilyl group Chemical group [H]C([H])([H])[Si]([*])(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- RYFMWSXOAZQYPI-UHFFFAOYSA-K trisodium phosphate Chemical compound [Na+].[Na+].[Na+].[O-]P([O-])([O-])=O RYFMWSXOAZQYPI-UHFFFAOYSA-K 0.000 description 1
- 210000003932 urinary bladder Anatomy 0.000 description 1
- 238000005406 washing Methods 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D207/00—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom
- C07D207/02—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom
- C07D207/30—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having two double bonds between ring members or between ring members and non-ring members
- C07D207/34—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having two double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D307/00—Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom
- C07D307/02—Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom not condensed with other rings
- C07D307/34—Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members
- C07D307/56—Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
- C07D307/68—Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D333/00—Heterocyclic compounds containing five-membered rings having one sulfur atom as the only ring hetero atom
- C07D333/02—Heterocyclic compounds containing five-membered rings having one sulfur atom as the only ring hetero atom not condensed with other rings
- C07D333/04—Heterocyclic compounds containing five-membered rings having one sulfur atom as the only ring hetero atom not condensed with other rings not substituted on the ring sulphur atom
- C07D333/26—Heterocyclic compounds containing five-membered rings having one sulfur atom as the only ring hetero atom not condensed with other rings not substituted on the ring sulphur atom with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
- C07D333/38—Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D409/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms
- C07D409/02—Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing two hetero rings
- C07D409/12—Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing two hetero rings linked by a chain containing hetero atoms as chain links
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D417/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
- C07D417/02—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings
- C07D417/12—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings linked by a chain containing hetero atoms as chain links
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D471/00—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
- C07D471/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
- C07D471/04—Ortho-condensed systems
Definitions
- the p21 ras oncogene is a major contributor to the development and progression of human solid cancers and is mutated in 30% of all human cancers; Bolton et al., Annual Reports in Medicinal Chemistry, 29, 165-174 (1994); Bos, Cancer Res., 49, 4682 (1989).
- ras protein In its normal, unmutated form, the ras protein is a key element of the signal transduction cascade directed by growth factor receptors in almost all tissues. See J. Avruch et al., TIBS (19), 279-283 (1994). Biochemically, ras is a guanine nucleotide binding protein, and cycling between a GTP-bound activated and a GDP-bound resting form is strictly controlled by ras' endogenous GTPase activity and other regulatory proteins. In the ras mutants in cancer cells, the endogenous GTPase activity is alleviated and, therefore, the protein delivers constitutive growth signals to downstream effectors such as the enzyme raf kinase.
- the present invention is directed to compounds and methods for the treatment of cancerous cell growth mediated by raf kinase.
- the compounds of the formulae (where Et is ethyl, Pr is propyl, and Bu is butyl).
- Preferred compounds include, e.g.,
- the compounds may be administered orally, topically, parenterally, by inhalation or spray or rectally in dosage unit formulations.
- parenteral as used herein includes subcutaneous injections, intravenous, intramuscular, intrasternal injection or infusion techniques.
- One or more compounds may be present in association with one or more non-toxic pharmaceutically acceptable carriers and if desired other active ingredients.
- the preferred method of administration is parenteral.
- compositions intended for oral use may be prepared according to any suitable method known to the art for the manufacture of pharmaceutical compositions.
- Such compositions may contain one or more agents selected from the group consisting of diluents, sweetening agents, flavoring agents, coloring agents and preserving agents in order to provide palatable preparations.
- Tablets contain the active ingredient in admixture with non-toxic pharmaceutically acceptable excipients which are suitable for the manufacture of tablets.
- excipients may be, for example, inert diluents, such as calcium carbonate, sodium carbonate, lactose, calcium phosphate or sodium phosphate; granulating and disintegrating agents, for example, corn starch, or alginic acid; and binding agents, for example magnesium stearate, stearic acid or talc.
- the tablets may be uncoated or they may be coated by known techniques to delay disintegration and adsorption in the gastrointestinal tract and thereby provide a sustained action over a longer period.
- a time delay material such as glyceryl monostearate or glyceryl distearate may be employed.
- These compounds may also be prepared in solid, rapidly released form.
- Formulations for oral use may also be presented as hard gelatin capsules wherein the active ingredient is mixed with an inert solid diluent, for example, calcium carbonate, calcium phosphate or kaolin, or as soft gelatin capsules wherein the active ingredient is mixed with water or an oil medium, for example peanut oil, liquid paraffin or olive oil.
- an inert solid diluent for example, calcium carbonate, calcium phosphate or kaolin
- water or an oil medium for example peanut oil, liquid paraffin or olive oil.
- Aqueous suspensions contain the active materials in admixture with excipients suitable for the manufacture of aqueous suspensions.
- excipients are suspending agents, for example sodium carboxymethylceliulose, methylcellulose, hydroxypropyl-methylcellulose, sodium alginate, polyvinylpyrrolidone, gum tragacanth and gum acacia; dispersing or wetting agents may be a naturally-occurring phosphatide, for example, lecithin, or condensation products or an alkylene oxide with fatty acids, for example polyoxyethylene stearate, or condensation products of ethylene oxide with long chain aliphatic alcohols, for example heptadecaethyleneoxycetanol, or condensation products of ethylene oxide with partial esters derived from fatty acids and hexitol such as polyoxyethylene sorbitol monooleate, or condensation products of ethylene oxide with partial esters derived from fatty acids and hexitol anhydrides, for example polyethylene sorbitan mono
- the aqueous suspensions may also contain one or more preservatives, for example ethyl, or n-propyl, p-hydroxybenzoate, one or more coloring agents, one or more flavoring agents, and one or more sweetening agents, such as sucrose or saccharin.
- preservatives for example ethyl, or n-propyl, p-hydroxybenzoate
- coloring agents for example ethyl, or n-propyl, p-hydroxybenzoate
- coloring agents for example ethyl, or n-propyl, p-hydroxybenzoate
- flavoring agents for example ethyl, or n-propyl, p-hydroxybenzoate
- sweetening agents such as sucrose or saccharin.
- Dispersible powders and granules suitable for preparation of an aqueous suspension by the addition of water provide the active ingredient in admixture with a dispersing or wetting agent, suspending agent and one or more preservatives.
- a dispersing or wetting agent e.g., talc, kaolin, kaolin, kaolin, kaolin, kaolin, kaolin, kaolin, kaolin, kaolin, kaolin, kaolin, kaolin, kaolin, kaolin, kaolin, sorbitol, sorbitol, sorbitol, sorbitol, sorbitol, sorbitol, sorbitol, sorbitol, sorbitol, sorbitol, sorbitol, mannitol, mannitol, mannitol, mannitol, mannitol, mannitol, mannitol, mannitol,
- the compounds may also be in the form of non-aqueous liquid formulations, e.g., oily suspensions which may be formulated by suspending the active ingredients in a vegetable oil, for example arachis oil, olive oil, sesame oil or peanut oil, or in a mineral oil such as liquid paraffin.
- oily suspensions may contain a thickening agent, for example beeswax, hard paraffin or cetyl alcohol. Sweetening agents such as those set forth above, and flavoring agents may be added to provide palatable oral preparations. These compositions may be preserved by the addition of an anti-oxidant such as ascorbic acid.
- compositions of the invention may also be in the form of oil-in-water emulsions.
- the oily phase may be a vegetable oil, for example olive oil or arachis oil, or a mineral oil, for example liquid parafin or mixtures of these.
- Suitable emulsifying agents may be naturally-occurring gums, for example gum acacia or gum tragacanth, naturally-occuring phosphatices, for example soy bean, lecithin, and esters or partial esters derived from fatty acids and hexitol anhydrides, for example sorbitan monooleate, and condensation products of the said partial esters with ethylene oxide, for example polyoxyethylene sorbitan monooleate.
- the emulsions may also contain sweetening and flavoring agents.
- Syrups and elixirs may be formulated with sweetening agents, for example glycerol, propylene glycol, sorbitol or sucrose. Such formulations may also contain a demulcent, a preservative and flavoring and coloring agents.
- sweetening agents for example glycerol, propylene glycol, sorbitol or sucrose.
- Such formulations may also contain a demulcent, a preservative and flavoring and coloring agents.
- the compounds may also be administered in the form of suppositories for rectal administration of the drug.
- These compositions can be prepared by mixing the drug with a suitable non-irritating excipient which is solid at ordinary temperatures but liquid at the rectal temperature and will therefore melt in the rectum to release the drug.
- suitable non-irritating excipient which is solid at ordinary temperatures but liquid at the rectal temperature and will therefore melt in the rectum to release the drug.
- Such materials are cocoa butter and polyethylene glycols.
- the compounds of the invention are typically employed at a dosage of 0.01 to 200 mg/kg per day, preferably 200 mg/kg ip.
- the specific dose level for any particular patient will depend upon a variety of factors, including the activity of the specific compound employed, the age, body weight, general health, sex, diet, time of administration, route of administration, and rate of excretion, drug combination and the severity of the condition undergoing therapy.
- the compounds of the invention are inhibitors of the enzyme raf kinase. Since the enzyme is a downstream effector of p21 ras , the instant inhibitors are useful in pharmaceutical compositions for human or veterinary use where inhibition of the raf kinase pathway is indicated, e.g., in the treatment of tumors and/or cancerous cell growth mediated by raf kinase. In particular, the compounds are useful in the treatment of human or animal, e.g., murine, solid cancers, since the progression of these cancers is dependent upon the ras protein signal transduction cascade and therefore susceptible to treatment by interruption of the cascade, i.e., by inhibiting raf kinase.
- the activity of a given compound to inhibit raf kinase can be routinely assayed, e.g., according to procedures disclosed herein.
- raf is incubated with MEK in 20 mM Tris-HCl, pH 8.2 containing 2 mM 2-mercaptoethanol and 100 mM NaCl. Twenty microliters of this protein solution are mixed with 5 ⁇ l of water or compounds diluted with distilled water from 10 mM stock solutions of compounds dissolved in DMSO. The kinase reaction is initiated by adding 25 ⁇ l [ ⁇ - 33 P]ATP (1000-3000 dpm/pmol) in 80 mM Tris-HCl, pH 7.5, 120 mM NaCl, 1.6 mM DTT, 16 mM MgCl 2 .
- the reaction mixtures are incubated at 32° C., usually for 22 minutes and incorporation of 33 P into protein is assayed by harvesting the reaction onto phosphocellulose mats, washing away free counts with 1% phosphoric acid and quantitating phosphorylation by liquid scintillation counting. For high throughput screening, 10 ⁇ M ATP and 0.4 ⁇ M MEK are used.
- the kinase reaction is stopped by adding an equal amount of Laemmli sample buffer. Samples are boiled 3 minutes and the proteins resolved by electrophoresis on 7.5% Laemmli gels. Gels are fixed, dried and exposed to an imaging plate (Fuji). Phosphorylation is analyzed using a Fujix Bio-Imaging Analyzer System. Protein kinase C (0.05 mU; Boehringer Manaheim) phosphorylation of histone H1 is assayed according to manufacturer's instructions.
- untransformed NIH3T3 fibroblast or transformed fibroblasts stably expressing their v-H-ras, v-Raf or v-fos are obtained (Onyx).
- the fibroblast lines are maintained in Dulbecco's Modified Eagle's Medium with high glucose containing 10% fetal bovine serum and 200 mM glutamine.
- Human colon carcinoma cell lines, DLD-1, Colo 205 and HCT116 are obtained from ATCC (Rockville, Md.) and maintained in RPMI with 10% fetal bovine serum and 200 mM glutamine.
- Cell culture media and additives are obtained from Gibco/BRL (Gaithersburg, Md.) except for fetal bovine serum (JRH Biosciences, Lenexa, Kans.).
- 3 ⁇ 10 3 cells are seeded into 96-well plates and allowed to grow overnight at 37° C. in a 5% CO 2 incubator. Proliferation is determined by allowing the cells to incorporate 3 H-thymidine during the last 18 hours of culture, harvesting cells onto glass fiber mats and measuring 3 H-thymidine incorporation by liquid scintillation counting.
- An in vivo assay of the inhibitory effect of the compounds on tumors (e.g., solid cancers) mediated by raf kinase can be performed as follows:
- CDI nu/nu mice (6-8 weeks old) are injected subcutaneously into the flank at 1 ⁇ 10 6 cells with human colon adenocarcinoma cell line. The mice are dosed ip at 50, 100, and 200 mg/kg beginnring on day 10, when tumor size is between 50-100 mg. Animals are dosed for 10 consecutive days once a day; tumor size was monitored with calipers twice a week to day 35.
- the inhibitory effect of the compounds on raf kinase and therefore on tumors (e.g., solid cancers) mediated by raf kinase can further be demonstrated in vivo according to the technique of Monia et al., Nature Medicine, 2(6):668-675 (1996).
- the compounds of theinvention are useful in treating solid cancers, such as, for example, carcinomas (e.g., of the lungs, pancreas, thyroid, bladder or colon, myeloid disorders (e.g., myeloid leukemia) or adenomas (e.g., villous colon adenoma).
- solid cancers such as, for example, carcinomas (e.g., of the lungs, pancreas, thyroid, bladder or colon, myeloid disorders (e.g., myeloid leukemia) or adenomas (e.g., villous colon adenoma).
- the compounds of formulae 1-31 are producible from known compounds (or from starting materials which, in turn, are producible from known compounds), e.g., through the general preparative methods shown below: Abbreviations Used:
- the carbamate ester (13.6 g, 39.2 mmol) was dissolved in saturated methyl amine/methanol (200 mL) in a screw top vessel. Sodium cyanide (0.98 g, 20 mmol) was suspended in the solution. The vessel was sealed and heated to 50° C. for 8 h. The solution was poured into water (500 mL) and extracted with ethyl acetate. The ethyl acetate layer was then washed with water, brine, dried over sodium sulfate, and concentrated in vacuo. The crude material was purified by flash chromatography with ethyl acetate/hexane affording 2.76 g (20%) of the N-methyl amide carbamate.
- the carbamate (2.76 g, 8 mmol) was then dissolved in 100 mL of 1:1 48% hydrobromic acid/acetic acid and heated to 30° C. for 24 h. The acidic solution was cooled and basidified to pH 4 with saturated sodium bicarbonate. Methyl amine (4 mL, 2 M) in tetrahydrofuran was added before extraction with methylene chloride. Solvent was removed in vacuo affording 922.5 mg (54%) of the N-methyl amide amine.
- Step 1 The amine in Step 1 was converted to 5-hydroxymethyl-3-(3-p-tolyl-ureido)-thiophene-2-carboxylic azid methyl ester following Method E using toluidine in place of 2-amino-5-trifluoromethyl-1,3,4-thiadiazole.
- the azide ester 120 mg, 718 umol was dissolved in toluene (3 ml) and heated to 100° C. for 5 h, then cooled to 20° C.
- Methyl 3-amino-5-tert-butyl-2-thiophene carboxylate 106 mg, 500 umol was added and the reaction was heated to 95° C. for 18 h.
- the reaction was cooled to 20° C. and the solvent was removed in vacuo.
- the crude material was purified by flash chromatography with hexane/ethyl acetate and then purified by normal phase HPLC with dichloromethane, affording 82.1 mg (46%) of Example 17 and 18 mg (10%) of 3-methyl-thiophene derivative.
- n-Butyllithium 25 ml, 40 mmol, 1.6 M in hexane solution, 1.1 equiv
- n-Butyllithium 25 ml, 40 mmol, 1.6 M in hexane solution, 1.1 equiv
- 2-t-butylfuran 36 mmol
- 60 mL of dry THF 60 mL
- dry THF 60 mL
- dry CO 2 generated from dry ice and dried over an anhydrous Na 2 SO 4 tower, is bubbled into the reaction mixture over 20 min at ⁇ 78° C. and then at 0° C.
- the reaction mixture is acidified with 1 M HCl to pH 1, then extracted with ethyl acetate.
- a Parr bottle containing 1.72 g of the mixture obtained from the above reaction and 0.5 g of Pd (10% on carbon) in 30 mL of cellosolve is successively evacuated and purged with H 2 gas three times.
- the reaction mixture is then shaken under an atmosphere of H 2 (40 psi) for 1 h, diluted with ethyl acetate and filtered through celite.
- the concentrated solution is flash chromatographed (20% ethyl acetate in hexane) to give 0.59 g of the amine (25% total yield) as a crystalline solid as well as 0.73 g of recovered methyl ester (34%).
- Phosgene (1.3 mL, 2.5 mmol, 193 M solution in toluene, 10 equiv) is added rapidly to a solution of 50 mg of the product from step 3 (0.25 mmol) in 1.0 mL of dry pyridine and 5 mL of dry toluene at rt under N 2 . After 30 min, the orange suspension is concentrated in vacuo, then successively charged with 1 ml of dry toluene and evaporated (2 times). Finally, 3 mL of toluene is added before the addition of 100 mg of toluidine (0.93 mmol, 3.7 equiv).
- Chlorotrimethylsilane (17.9 mL, 141 mmol, 2.5 equiv) is added in one portion to a solution of pyrrole-2-carboxylic acid (6.28 g, 56.5 mmol) in dry methanol (100 mL) under N 2 at rt. After stirring overnight, the reaction mixture is concentrated in vacuo, redissolved in dichloromethane, washed with water, dried (Na 2 SO 4 ) and concentrated to give 4.62 g of methyl pyrrole-2-carboxylate as a tannish semi-crystalline solid (65%), which was used without further purification.
- Fuming nitric acid (0.57 mL, 13.6 mmol, 1.5 equiv) is added in one portion via syringe to a heterogeneous mixture of methyl-5-t-butylpyrrole-2-carboxylate (1.65 g, 9.10 mmol) in concentrated sulfuric acid (19 mL) under N 2 at rt. After 1 h, the reaction is poured over ice-water and slowly neutralized to pH 7 with solid sodium carbonate, extracted with diethyl ether (2 ⁇ ), dried (Na 2 SO 4 ) and concentrated in vacuo.
- Phosgene (0.32 mL, 0.62 mmol, 1.93 M solution in toluene, 10 equiv) is added rapidly to a solution of methyl-3-amino-5-t-butylpyrrole-2-carboxylate (12.2 mg, 0.062 mmol) and dry pyridine (247 mL, 3.06 mmol, 49.4 equiv) in dry toluene (1 mL). After 30 min, the orange suspension is concentrated in vacuo, then successively charged with 1 mL of dry toluene and evaporated (2 ⁇ ). Finally, toluene (2 mL) is added before the addition of p-toluidine (10 mg, 0.094 mmol).
- Example 24 As a pale yellow amorphous solid (80%).
- Sodium hydroxide (0.21 g, 2.65 mmol, 50% aqueous, 6 equiv) is added to a cold (0-10° C.) solution of methyl 5-t-butyl-3-nitropyrrole-2-carboxylate (100 mg, 0.44 mmol), benzyltributyl ammonium bromide (158 mg, 0.44 mmol, 1 equiv), and dimethyl sulfate (46 mL, 0.49 mmol, 1.1 equiv) in dichloromethane (1 mL). After 5 min, the cooling bath is removed and the mixture is stirred for 4 h at rt.
- Phosgene (1.45 mL, 2.80 mm 0 l, 1.93 M solution in toluene, 10 equiv) is added rapidly to a solution of methyl-3-amino-1-methyl-5-t-butylpyrrole-2-carboxylate (59 mg, 0.280 mmol) in dry pyridine (1 mL) and dry toluene (2 mL). Additional dry toluene (3 mL) is added to aid stirring of the heterogeneous mixture. after 30 min, the orange suspension is concentrated in vacuo, then successively charged with dry toluene (1 mL) and evaporated (2 ⁇ ).
- Triethyl amine (3.04 mL, 21.8 mmol) was added to a solution of methyl cyanoacetate (4.00 g, 40.4 mmol), sulfur (1.29 g, 40.4 mmol) and DMF (20 mL) at ambient temperature 3,3-dimethyl butraldehyde (5.08 g, 40.4 mmol) was added and stirred 1 h before being poured into water (200 mL). Solids were filtered off and filtrate was estracted with ethyl acetate. The acetate layer was filtered through a plug of silica gel and concentrated in vacuo. Purification via flash chromatography afforded 4.19 g (49%) of methyl 2-amino-5-t-butylthiophene 3-carboxylate.
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Abstract
Description
- The p21ras oncogene is a major contributor to the development and progression of human solid cancers and is mutated in 30% of all human cancers; Bolton et al., Annual Reports in Medicinal Chemistry, 29, 165-174 (1994); Bos, Cancer Res., 49, 4682 (1989).
- In its normal, unmutated form, the ras protein is a key element of the signal transduction cascade directed by growth factor receptors in almost all tissues. See J. Avruch et al., TIBS (19), 279-283 (1994). Biochemically, ras is a guanine nucleotide binding protein, and cycling between a GTP-bound activated and a GDP-bound resting form is strictly controlled by ras' endogenous GTPase activity and other regulatory proteins. In the ras mutants in cancer cells, the endogenous GTPase activity is alleviated and, therefore, the protein delivers constitutive growth signals to downstream effectors such as the enzyme raf kinase. This leads to the cancerous growth of the cells which carry these mutants, Magnuson et al., Cancer Biology, 5, 247-253 (1994). It has been shown that inhibiting the effect of active ras by inhibiting the raf kinase signaling pathway by administration of deactivating antibodies to raf kinase or by co-expression of dominant negative raf kinase or dominant negative MEK, the substrate of raf kinase, leads to the reversion of transformed cells to the normal growth phenotype. See Daum et al., TIBS 19, 474-480 (1994), and Fridman et al., J. Biol. Chem., 269, 30105-30108 (1994). Kolch et al., Nature, 349, 426-428 (1991), have further indicated that inhibition of raf expression by antisense RNA blocks cell proliferation in membrane-associated oncogenes. Similarly, inhibition of raf kinase (by antisense oligodeoxynucleotides) has been correlated in vitro and in vivo with inhibition of the growth of a variety of human tumor types; Monia et al., Nature Medicine, 2(6):668-675 (1996).
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- The compounds may be administered orally, topically, parenterally, by inhalation or spray or rectally in dosage unit formulations. The term parenteral as used herein includes subcutaneous injections, intravenous, intramuscular, intrasternal injection or infusion techniques. One or more compounds may be present in association with one or more non-toxic pharmaceutically acceptable carriers and if desired other active ingredients. The preferred method of administration is parenteral.
- Compositions intended for oral use may be prepared according to any suitable method known to the art for the manufacture of pharmaceutical compositions. Such compositions may contain one or more agents selected from the group consisting of diluents, sweetening agents, flavoring agents, coloring agents and preserving agents in order to provide palatable preparations. Tablets contain the active ingredient in admixture with non-toxic pharmaceutically acceptable excipients which are suitable for the manufacture of tablets. These excipients may be, for example, inert diluents, such as calcium carbonate, sodium carbonate, lactose, calcium phosphate or sodium phosphate; granulating and disintegrating agents, for example, corn starch, or alginic acid; and binding agents, for example magnesium stearate, stearic acid or talc. The tablets may be uncoated or they may be coated by known techniques to delay disintegration and adsorption in the gastrointestinal tract and thereby provide a sustained action over a longer period. For example, a time delay material such as glyceryl monostearate or glyceryl distearate may be employed. These compounds may also be prepared in solid, rapidly released form.
- Formulations for oral use may also be presented as hard gelatin capsules wherein the active ingredient is mixed with an inert solid diluent, for example, calcium carbonate, calcium phosphate or kaolin, or as soft gelatin capsules wherein the active ingredient is mixed with water or an oil medium, for example peanut oil, liquid paraffin or olive oil.
- Aqueous suspensions contain the active materials in admixture with excipients suitable for the manufacture of aqueous suspensions. Such excipients are suspending agents, for example sodium carboxymethylceliulose, methylcellulose, hydroxypropyl-methylcellulose, sodium alginate, polyvinylpyrrolidone, gum tragacanth and gum acacia; dispersing or wetting agents may be a naturally-occurring phosphatide, for example, lecithin, or condensation products or an alkylene oxide with fatty acids, for example polyoxyethylene stearate, or condensation products of ethylene oxide with long chain aliphatic alcohols, for example heptadecaethyleneoxycetanol, or condensation products of ethylene oxide with partial esters derived from fatty acids and hexitol such as polyoxyethylene sorbitol monooleate, or condensation products of ethylene oxide with partial esters derived from fatty acids and hexitol anhydrides, for example polyethylene sorbitan monooleate. The aqueous suspensions may also contain one or more preservatives, for example ethyl, or n-propyl, p-hydroxybenzoate, one or more coloring agents, one or more flavoring agents, and one or more sweetening agents, such as sucrose or saccharin.
- Dispersible powders and granules suitable for preparation of an aqueous suspension by the addition of water provide the active ingredient in admixture with a dispersing or wetting agent, suspending agent and one or more preservatives. Suitable dispersing or wetting agents and suspending agents are exemplified by those already mentioned above. Additional excipients, for example, sweetening, flavoring and coloring agents, may also be present.
- The compounds may also be in the form of non-aqueous liquid formulations, e.g., oily suspensions which may be formulated by suspending the active ingredients in a vegetable oil, for example arachis oil, olive oil, sesame oil or peanut oil, or in a mineral oil such as liquid paraffin. The oily suspensions may contain a thickening agent, for example beeswax, hard paraffin or cetyl alcohol. Sweetening agents such as those set forth above, and flavoring agents may be added to provide palatable oral preparations. These compositions may be preserved by the addition of an anti-oxidant such as ascorbic acid.
- Pharmaceutical compositions of the invention may also be in the form of oil-in-water emulsions. The oily phase may be a vegetable oil, for example olive oil or arachis oil, or a mineral oil, for example liquid parafin or mixtures of these. Suitable emulsifying agents may be naturally-occurring gums, for example gum acacia or gum tragacanth, naturally-occuring phosphatices, for example soy bean, lecithin, and esters or partial esters derived from fatty acids and hexitol anhydrides, for example sorbitan monooleate, and condensation products of the said partial esters with ethylene oxide, for example polyoxyethylene sorbitan monooleate. The emulsions may also contain sweetening and flavoring agents.
- Syrups and elixirs may be formulated with sweetening agents, for example glycerol, propylene glycol, sorbitol or sucrose. Such formulations may also contain a demulcent, a preservative and flavoring and coloring agents.
- The compounds may also be administered in the form of suppositories for rectal administration of the drug. These compositions can be prepared by mixing the drug with a suitable non-irritating excipient which is solid at ordinary temperatures but liquid at the rectal temperature and will therefore melt in the rectum to release the drug. Such materials are cocoa butter and polyethylene glycols.
- It will be appreciated by those skilled in the art that the particular method of administration will depend on a variety of factors, all of which are considered routinely when administering therapeutics.
- The compounds of the invention are typically employed at a dosage of 0.01 to 200 mg/kg per day, preferably 200 mg/kg ip.
- It will be understood, however, that the specific dose level for any particular patient will depend upon a variety of factors, including the activity of the specific compound employed, the age, body weight, general health, sex, diet, time of administration, route of administration, and rate of excretion, drug combination and the severity of the condition undergoing therapy.
- The compounds of the invention are inhibitors of the enzyme raf kinase. Since the enzyme is a downstream effector of p21ras, the instant inhibitors are useful in pharmaceutical compositions for human or veterinary use where inhibition of the raf kinase pathway is indicated, e.g., in the treatment of tumors and/or cancerous cell growth mediated by raf kinase. In particular, the compounds are useful in the treatment of human or animal, e.g., murine, solid cancers, since the progression of these cancers is dependent upon the ras protein signal transduction cascade and therefore susceptible to treatment by interruption of the cascade, i.e., by inhibiting raf kinase.
- The activity of a given compound to inhibit raf kinase can be routinely assayed, e.g., according to procedures disclosed herein.
- In such an in vitro kinase assay, raf is incubated with MEK in 20 mM Tris-HCl, pH 8.2 containing 2 mM 2-mercaptoethanol and 100 mM NaCl. Twenty microliters of this protein solution are mixed with 5 μl of water or compounds diluted with distilled water from 10 mM stock solutions of compounds dissolved in DMSO. The kinase reaction is initiated by adding 25 μl [γ-33P]ATP (1000-3000 dpm/pmol) in 80 mM Tris-HCl, pH 7.5, 120 mM NaCl, 1.6 mM DTT, 16 mM MgCl2. The reaction mixtures are incubated at 32° C., usually for 22 minutes and incorporation of 33P into protein is assayed by harvesting the reaction onto phosphocellulose mats, washing away free counts with 1% phosphoric acid and quantitating phosphorylation by liquid scintillation counting. For high throughput screening, 10 μM ATP and 0.4 μM MEK are used. In some experiments, the kinase reaction is stopped by adding an equal amount of Laemmli sample buffer. Samples are boiled 3 minutes and the proteins resolved by electrophoresis on 7.5% Laemmli gels. Gels are fixed, dried and exposed to an imaging plate (Fuji). Phosphorylation is analyzed using a Fujix Bio-Imaging Analyzer System. Protein kinase C (0.05 mU; Boehringer Manaheim) phosphorylation of histone H1 is assayed according to manufacturer's instructions.
- For in vitro growth assay, untransformed NIH3T3 fibroblast or transformed fibroblasts stably expressing their v-H-ras, v-Raf or v-fos are obtained (Onyx). The fibroblast lines are maintained in Dulbecco's Modified Eagle's Medium with high glucose containing 10% fetal bovine serum and 200 mM glutamine. Human colon carcinoma cell lines, DLD-1, Colo 205 and HCT116 are obtained from ATCC (Rockville, Md.) and maintained in RPMI with 10% fetal bovine serum and 200 mM glutamine. Cell culture media and additives are obtained from Gibco/BRL (Gaithersburg, Md.) except for fetal bovine serum (JRH Biosciences, Lenexa, Kans.). In some experiments, 3×103 cells are seeded into 96-well plates and allowed to grow overnight at 37° C. in a 5% CO2 incubator. Proliferation is determined by allowing the cells to incorporate 3H-thymidine during the last 18 hours of culture, harvesting cells onto glass fiber mats and measuring 3H-thymidine incorporation by liquid scintillation counting.
- These assays establish that the compounds of formula I are active to inhibit raf kinase activity and to inhibit oncogenic cell growth.
- An in vivo assay of the inhibitory effect of the compounds on tumors (e.g., solid cancers) mediated by raf kinase can be performed as follows:
- CDI nu/nu mice (6-8 weeks old) are injected subcutaneously into the flank at 1×106 cells with human colon adenocarcinoma cell line. The mice are dosed ip at 50, 100, and 200 mg/kg beginnring on day 10, when tumor size is between 50-100 mg. Animals are dosed for 10 consecutive days once a day; tumor size was monitored with calipers twice a week to day 35.
- The inhibitory effect of the compounds on raf kinase and therefore on tumors (e.g., solid cancers) mediated by raf kinase can further be demonstrated in vivo according to the technique of Monia et al., Nature Medicine, 2(6):668-675 (1996).
- Accordingly, the compounds of theinvention are useful in treating solid cancers, such as, for example, carcinomas (e.g., of the lungs, pancreas, thyroid, bladder or colon, myeloid disorders (e.g., myeloid leukemia) or adenomas (e.g., villous colon adenoma).
-
- Ac, acetyl; Ar, aryl; Boc, t-butoxycarbonyl; Bn, benzyl; Cbz, carbobenzyloxy; DCC, dicyclohexylcarbodiimide; DMAP, 4-dimethylaminopyridine; DMF, N,N-dimethylformamide; Et, ethyl; EtOAc, ethyl acetate; LRMS, low resolution mass spectrometry; Me, methyl; NMM, N-methyl morpholine; Ph, phenyl; Pr, propyl; pyr., pyridine; TLC, thin layer chromatography; TFA, trifluoroacetic acid; TMS, trimethylsilyl; Ts, p-toluenesulfonyl.
- Without further elaboration, it is believed that one skilled in the art can, using the preceding description, utilize the present invention to its fullest extent. The following preferred specific embodiments are, therefore, to be construed as merely illustrative and not limitative of the remainder of the disclosure in any way whatsoever.
- In the foregoing and in the following examples, all temperatures are set forth uncorrected in degrees Celsius and, unless otherwise indicated, all parts and percentages are by volume.
- The entire disclosure of all applications, patents and publications, cited above and below, are hereby incorporated by reference.
- Experimental:
- Flash chromatography was run using Silica Gel 60 (230-400 mesh size) from EM Science. Mass spectral data were obtained on a Krato-MS 80RFA spectrometer using the fast atom bombardment technique (FAB) unless otherwise noted. Melting points were taken on a Thomas-Hoover Uni-Melt apparatus and are not corrected.
TABLE 1 3-Ureido Thiophenes mp ° C. or Example # R5 R2 Method LRMS 1 i-Pr COOMe A 93-95 2 t-Bu COOMe A 124-126 3 t-Bu COOEt B (M + H)+ = 361 4 t-Bu CONHMe C 230-231 5 CH2Br COOMe D 157-158 -
TABLE 2 Heteroaryl substitution for A mp ° C. or Example # A Method LRMS 6 E (M + H)+ = 409 7 F (M + H)+ = 339 8 F (M + H)+ = 353 9 E 186-188 10 E (M + H)+ = 397 11 E (M + H)+ = 372 12 E 215-216 13 E 168-170 14 E 229-231 15 E (M + H)+ = 381 16 E (M + H)+ = 364 17 F (M + H)+ = 353 18 G (M + H)+ = 350 19 G (M + H)+ = 364 20 G (M + H)+ = 364 21 G (M + H)+ = 351 -
-
- The following compounds have been synthesized according to the general methods listed above:
- Method A
-
- To a suspension of sodium methoxide (14 g) in methanol (1 L) was added methyl thioglycolate (22.3 mL). The solution was stirred 5 min, then 3-chloro-4-methyl-2pentenenitrile (32.4 g) [Hackler, R. E. et al. J. Heterocyclic Chem. 1989, 26, 1575; Hartmann, H.; Liebscher, J. Synthesis 1984, 275; Gupton, J. T. et al. Synthetic Comm. 1982, 12, 34] in methanol (200 mL) was added and the solution was heated to reflux for 90 min. After cooling to 20° C., the solvent was removed in vacuo. The residue was dissolved in ethyl acetate and was washed with 1N HCl, dried over MgSO4 and the solvent was removed in vacuo. The residue was purified by flash chromatography using hexane/ethyl acetate mixtures to yield 8.0 g (16%) of the desired amino thiophene.
- Step 2
- A solution of 3-amino-5-isopropyl-2-methyl ester-thiophene (233 mg) in toluene (10 mL) was heated to reflux. A solution of p-methylphenyl isocyanate (150 uL) in toluene (5 mL) was added via a syringe pump over 1 h. The reaction was heated to reflux for 1 h, cooled to 20° C. and the solvent removed in vacuo. The residue was purified by flash chromatography using hexane/dichloromethane mixtures to yield 265 mg (68%) of Example 1 as a foam. 1H NMR (CDCl3) d 1.28 (s, 6H), 2.30 (s; 3H), 3.06 (m, 1H), 3.75 (s, 3H), 7.11 (d, 2H), 7.30 (d, 2H), 7.72 (s, 1H), 7.83 (s, 1H), 9.67 (s, 1H).
- 5-tert-Butyl-3-(3-p-tolyl-ureido)-thiophene-2-carboxylic acid methyl ester (example 2) was synthesized according to this procedure using 3-chloro-4,4-dimethyl-2-pentenenitrile in place of the 3-chloro-4-methyl-2-pentenenitrile.
- Method B
-
- A solution of titanium isopropoxide (1 mL), methyl 3-(4-methyl phenyl urea)-5-tert-butyl thiophene-2-carboxylate (500 mg, 1.44 mmol), and ethanol (10 mL) was heated to for 24 h. Solvent was removed in vacuo and the resultant oil was dissolved in methylene chloride and purified by flash chromatography (ethyl acetate/hexane). Concentration in vacuo afforded 119 mg (23%) of Example 3. 1H NMR (CDCl3) d 9.71 (s, 1H); 7.87 (s, 1H); 7.29 (d, J=8.5 Hz, 2H); 7.15 (d, J=8.1 Hz, 2H); 4.28 (q, J=7.4 Hz, 2H); 2.33 (s, 3H); 1.29 (m, 12H).
- Method C
-
- A solution of methyl-3-amino-5-t-butylthiophene-2-carboxylate (20.0 g, 93.9 mmol), benzyl chloroformate (80.4 mL, 563 mmol), sodium carbonate (1.10 g, 9.93 mmol), toluene (400 mL) and water (50 mL) was kept at reflux 18 h. Solvent was removed in vacuo and resulting oil dissolved in ethyl acetate, washed with water, brine, dried over magnesium sulfate and concentrated in vacuo affording the corresponding benzyl carbamate ester in quantitative crude yield.
- Step 2
- The carbamate ester (13.6 g, 39.2 mmol) was dissolved in saturated methyl amine/methanol (200 mL) in a screw top vessel. Sodium cyanide (0.98 g, 20 mmol) was suspended in the solution. The vessel was sealed and heated to 50° C. for 8 h. The solution was poured into water (500 mL) and extracted with ethyl acetate. The ethyl acetate layer was then washed with water, brine, dried over sodium sulfate, and concentrated in vacuo. The crude material was purified by flash chromatography with ethyl acetate/hexane affording 2.76 g (20%) of the N-methyl amide carbamate.
- Step 3
- The carbamate (2.76 g, 8 mmol) was then dissolved in 100 mL of 1:1 48% hydrobromic acid/acetic acid and heated to 30° C. for 24 h. The acidic solution was cooled and basidified to pH 4 with saturated sodium bicarbonate. Methyl amine (4 mL, 2 M) in tetrahydrofuran was added before extraction with methylene chloride. Solvent was removed in vacuo affording 922.5 mg (54%) of the N-methyl amide amine.
- Step 4
- A solution of the amine (600 mg, 2.83 mmol), p-tolyl isocyanate (356.4 uL, 2.83 mmol) and 2 mL toluene was heated to reflux for 18 h. Solvent was removed in vacuo and the resulting solid was purified by flash chromatography with ethyl acetate/methylene chloride affording 417 mg (44%) of Example 4. 1H NMR (CDCl3) d 10.53 (s, 1 h); 7.90 (s, 1 h); 7.29 (d, 2H, J=8.5 Hz); 7.11 (d, 2H, J=8.5 Hz); 5.59 (bs, 1 h); 2.91 (d, 3H, J=4.9 Hz); 2.31 (s, 3H); 1.38 (s, 9H); mp 202-204° C.
- Method D
-
- To a dry three-necked flask containing anhydrous methanol (10 mL) kept cold with an ice-water bath was added sodium spheres (116 mg, 5.06 mmol). After the sodium spheres were completely dissolved, methyl thioglycolate (537 mg, 5.06 mmol) was added. After ca. 5 min, a solution of crude 4-(2-tetrahydropyranoxy)-2-butyl-nitrile (0.76 g, 4.60 mmol) [Murray, R.; Zweifel, G., Synthesis, 1980, 150] in methanol (10 mL) was added to the mixture. The mixture was allowed to warm up to rt and maintained at this temperature for 2 h. The mixture was concentrated and the concentrate was partitioned between EtOAc (100 mL) and H2O (50 mL). The organic layer was washed with brine (2×50 mL), dried (MgSO4), and concentrated in vacuo. The crude product was purified by Chromatotron (4 mm plate, hexane-EtOAc, 9:1) to afford the aminothiophene (593 mg, 48%) as an orange oil. 1H NMR (CDCl3) d 6.57 (s, 1H); 5.00 (br s, 2H); 4.79-4.72 (m, 1H); 4.62 (s, 2H); 3.90-3.80 (m, 1H); 3.82 (s, 3H); 3.58-3.53 (m, 1H); 1.90-1.52 (m, 6H); GC-MS 271 [M]+.
- Step 2
- The amine in Step 1 was converted to 5-hydroxymethyl-3-(3-p-tolyl-ureido)-thiophene-2-carboxylic azid methyl ester following Method E using toluidine in place of 2-amino-5-trifluoromethyl-1,3,4-thiadiazole. 1H NMR (DMSO-d6) d 9.86 (s, 1H); 9.48 (s, 1H); 7.83 (s, 1H); 7.34 (d, J=8.1 Hz, 2H); 7.07 (d, J=8.5 Hz, 2H); 5.71 (t, J=5.0 Hz, 1H); 4.61 (d, J=4.4 Hz, 2H); 3.79 (s, 3H); 2.21 (s, 3H); MS (FAB-LSIMS) 321.2 [M+H]+; mp 166-168° C.
- Step 3
- To a solution of 5-hydroxymethyl-3-(3-p-tolyl-ureido)-thiophene-2-carboxylic acid methyl ester (25 mg, 0.078 mmol) in anhydrous DMF (2 mL) was added N-bromosuccinimide (28 mg, 0.156 mmol), and triphenylphosphine (41 mg, 0.156 mmol). The mixture was heated to 50° C. and maintained at this temperature for an hour. The mixture was cooled down to rt. Methanol (0.5 mL) was added to destroy excess reagent. After 10 min, Et2O (25 mL) was added and the mixture was washed with H2O (10 mL), saturated NaHCO3 (2×10 mL) and brine (10 mL). The organic layer was dried (MgSO4), and concentrated in vacuo. The crude product was purified by Chromatotron (2 mm plate, 2% EtOAc in hexane) to afford Example 5 (12.5 mg, 42%) as a white solid. 1H NMR (CDCl3) d 9.59 (s, 1H); 8.10 (s, 1H); 7.28 (d, 2H, J=8.5 Hz); 7.17 (d, 2H, J=8.1 Hz; 6.70 (bs, 1H); 4.59 (s, 2H); 3.82 (s, OCH3); 2.34 (s, 3H); MS (FAB-LSIMS) 382, 384 [M+H]+; m.p. 157-158° C.
- Method E
-
- To a solution of 20% phosgene in toluene (37.8 ml, 73.0 mmol) in dichloromethane (90 ml) at −15° C. was slowly added a solution of pyridine (5.9 ml, 73.0 mmol, and methyl 3-amino-5-tert-butyl thiophene-2-carboxylate (10.39 g, 48.7 mmol) in dichloromethane (60 ml). The reaction was allowed to slowly warm to 20° C. over 18 h. The resulting slurry was concentrated in vacuo to dryness and resuspended in ethyl ether and filtered with argon pressure through a glass frit. The solvent was removed in vacuo and the isocyanate residue was diluted to 0.2 M in toluene.
- Step 2
- A solution of 2-amino-5-trifluoromethyl-1,3,4-thiadiazole (84.5 mg, 500 umol) in 2 ml of the toluene solution from step 1 (400 umol, was stirred for 18 h and the solvent was removed in vacuo. the crude product was purified by flash chromatography with ethyl acetate/hexane affording 144.3 mg (88%) of Example 6 as a foam. 1H NMR (CDCl3) d 12.5 (bs, 1H); 10.3 (s, 1H); 7.8 (s, 1H); 3.8 (s, 3H); 1.4 (s, 9H). FAB-MS (M+H)+ 409.
- 5-tert-Butyl-3-[3-(1-methyl-1H-pyrazol-3-yl)-ureido]-thiophene-2-carboxylic acid methyl ester (example 9) was synthesized according to this procedure using N-methyl-3-amino-pyrazole in place of the 2amino-5-trifluoromethyl-1,3,4-thiadiazole.
- 5-tert-Butyl-3-[3-(5-tert-butyl-[1,3,4]thiadiazol-2-yl)-ureido]-thiophene-2-carboxylic acid methyl ester (example 10) was synthesized according to this procedure using 2-amino-5-t-butyl-1,3,4-thiadiazole in place of the 2-amino-5-trifluoromethyl-1,3,4-thiadiazole.
- 5-tert-Butyl-3-[3-(1H-indol-5-yl-ureido]-thiophene-2-carboxylic acid methyl ester (example 11) was synthesized according to this procedure using 5-amino indole in place of the 2-amino-5-trifluoromethyl-1,3,4-thiadiazole.
- 5-tert-Butyl-3-[3-(5-methyl-thiazol-2-yl)ureido]-thiophene-2-carboxylic acid methyl ester (example 12) was synthexized according to this procedure using 2-amino-5-methyl thiazole in place of the 2-amino-5-trifluoromethyl-1,3,4-thiadiazole.
- 5-tert-Butyl-3-[3-(5-ethyl-[1,3,4]thiadiazol-2-yl)-ureido]-thiophene-2-carboxylic acid methyl ester (example 13) was synthesized according to this procedure using 2-amino-5-ethyl-1,3,4-thiadiazole in place of the 2-amino-5-trifluoromethyl-1,3,4-thiadiazole.
- 5-tert-Butyl-3-[3-(5-methyl-[1,3,4]thiadiazol-2-yl)-ureido]-thiophene-2-carboxylic acid methyl ester (example 14) was synthesized according to this procedure using 2-amino-5-methyl-1,3,4-thiadiazole in place of the 2-amino-5-trifluoromethyl-1,3,4-thiadiazole.
- 5-tert-Butyl-3-[3-(5-cyclopropyl-[1,3,4]thiadiazol-2-yl)-ureido]-thiophene-2-carboxylic acid methyl ester (example 15) was synthesized according to this procedure using 2-amino-5-cyclopropyl-1,3,4-thiadiazole in place of the 2-amino-5-trifluoromethyl-1,3,4-thiadiazole.
- 5-tert-Butyl-3-{3-[2-(1methyl-1H-pyrrol-2yl)-ethyl]ureido}-thiophene-2-carboxylic acid methyl ester (example 16) was synthesized according to this procedure using 2-(2-aminoethyl)-1-methyl-pyrrole in place of the 2-amino-5-trifluoromethyl-1,3,4-thiadiazole.
- Method F
-
- A solution of 3-methylthiophene (5 ml, 51.75 mmol) and sodium persulfate (18.48 g, 77.6 mmol) and palladium acetate (5.81 g, 25.9 mmol) in acetic acid (500 ml) was heated to reflux. A slow stream of carbon monoxide was bubbled through the solution for 3 h. The reaction was cooled to 20° C. and concentrated in vacuo. The residue was dissolved in dichloromethane, celite was added and the solution was filtered and then passed through a pad of silica gel and concentrated in vacuo. The residue was dissolved in etyl acetate and extracted into 2 N potassium hydroxide. The aqueous layer was washed with ethyl acetate and the pH was lowered to zero with HCL (conc.). The product was extracted into ethyl acetate, washed with saturated sodium chloride and concentrated in vacuo to yield 1.86 g (25%) of a mixture of 3-methyl-2-thiophene-carboxylic acid and 4-methyl-2-thiophene-carboxylic acid.
- Step 2
- A solution of 3-methyl-2-thiophene-carboxylic acid and 4-methyl-2-thiophene carboxylic acid (1.11 g, 7.81 mmol) and triethylamine (1.3 ml, 9.38 mmol in acetone (75 ml) was cooled to −15° C. and ethyl chloroformate (1.12 ml, 11.72 mmol) was slowly added. The mixture was stirred for 15 min and sodium azide (863 mg, 13.28 mmol) in water (15 ml) was added. The reaction was stirred for 30 min, then diluted with dichloromethane and washed with 50% saturated sodium chloride. The organic phase was dried with magnesium sulfate and the solvent was removed in vacuo. The residue was purified by flash chromatography with hexane/ethyl acetate to give 913 mg (70%) of the mixture of azide esters.
- Step 3
- The azide ester (120 mg, 718 umol) was dissolved in toluene (3 ml) and heated to 100° C. for 5 h, then cooled to 20° C. Methyl 3-amino-5-tert-butyl-2-thiophene carboxylate (106 mg, 500 umol) was added and the reaction was heated to 95° C. for 18 h. The reaction was cooled to 20° C. and the solvent was removed in vacuo. The crude material was purified by flash chromatography with hexane/ethyl acetate and then purified by normal phase HPLC with dichloromethane, affording 82.1 mg (46%) of Example 17 and 18 mg (10%) of 3-methyl-thiophene derivative.
- 5-tert-Butyl-3-(3-thiophen-2-yl-ureido)-thiophene-2-carboxylic acid methyl ester (example 7) was synthesized according to this procedure steps 2 and 3 using 2-thiophene carboxylic acid in place of 3-methyl-2-thiophene-carboxylic acid.
- 5-tert-Butyl-3-[3-(5-methyl-thiophen-2-yl)ureido]-thiophene-2-carboxylic acid methyl ester (example 8) was synthesized according to this procedure steps 2 and 3 using 5-methyl-2-thiophene carboxylic acid in place of 3-methyl-2-thiophene-carboxylic acid.
- Method G
-
- A solution of 3-nitropyrrole (446 mg, 4.16 mmol), cesium carbonate (1.63 g, 4.99 mmol), iodoethane (998 ul, 12.48 mmol) in DMF (10 ml) was stirred for 2.5 hours at 20° C. The reaction was diluted with ethyl acetate, washed 1N hydrochloric acid (3×), dried with sodium sulfate and the solvent removed in vacuo. The crude material was purified by flash chromatography with 100% dichloromethane affording 480 mg (82%) as an oil.
- Step 2
- To a solution of the product from Step 1 (480 mg, 3.43 mmol) in methanol (10 ml) was added 10% palladium on charcoal (30 mg). The reaction was hydrogenated at atmospheric pressure for 18 h at 20° C., then filtered. The solvent was removed in vacuo affording 342 mg (91%) as a oil.
- Step 3
- A solution of the product from Step 2 (342 mg, 3.11 mmol) and methyl-5-t-butyl-3-isocyanothiophene-2-carboxylate (0.2 M in toluene, 3 ml) was stirred for 20 h at 20° C. The solvent was removed in vacuo and the crude material was purified by flash chromatography with ethyl acetate/hexane affording 136 mg (65%) of Example 18 as a foam. 1H NMR (CDCl3) d 9.7 (s, 1H); 8.0 (s, 1H); 7.75 (s, 1H); 7.65 (m, 2H); 7.3 (m, 2H); 3.8 (s, 3H); 1.3 (s, 9H). FAB-MS (M+H)+ 350.
- 5-tert-Butyl-3-[3-(1-propyl-1H-pyrrol-3-yl)-ureido]-thiophene-2-carboxylic acid methyl ester (example 19) was synthesized according to this procedure using allyl bromide in place of the iodoethane.
- 5-tert-Butyl-3-[3-(1-isopropyl-1H-pyrrol-3-yl)-ureido]-thiophene-2-carboxylic acid methyl ester (example 20) was synthesized according to this procedure using 2-bromopropane in place of the iodoethane.
- 5-tert-Butyl-3-[3-(1-ethyl-1H-pyrazol-3-yl)-ureido]-thiophene-2-carboxylic acid methyl ester (example 21) was synthesized according to this procedure using 3-nitropyrazole in place of the 3-nitropyrrole.
- Method H
-
- n-Butyllithium (25 ml, 40 mmol, 1.6 M in hexane solution, 1.1 equiv) is added dropwise to a solution of 4.5 g of 2-t-butylfuran (36 mmol) in 60 mL of dry THF at −78° C. under N2. After 30 min, the cooling bath is replaced with an ice bath and the mixture stirred at 0° C. for 1 h. Dry CO2, generated from dry ice and dried over an anhydrous Na2SO4 tower, is bubbled into the reaction mixture over 20 min at −78° C. and then at 0° C. The reaction mixture is acidified with 1 M HCl to pH 1, then extracted with ethyl acetate. The organic layer is washed with brine, dried (NaSO4) and concentrated to give 4.2 g of 2-tertbutyl 5-furanoic acid as a pale yellow solid (69%). 1H NMR (CDCl3) d 11.0 (br s, 1H), 7.19 (d, 1H, J=3.3 Hz), 6.11 (d 1H, J=3.3 Hz), 1.29 (s, 9H).
- Step 2
- A solution of 2.0 g of the furanoic acid (11.9 mmol) in 30 mL of dry THF is cooled to −78° C. under N2 before the dropwise addition of 15.6 mL of n-butyllithium (25 mmol, 1.6 M in hexane solution, 2.1 equiv). After 30 min, 2.3 g of TsN3 (11.9 mmol, 1.1 equiv) in 3 mL of dry THF (3 mL wash) is added dropwise via cannula. The yellow solution is allowed to heat to 0° C. over 2 h, then 6 g of potassium acetate (60 mmol, 5 equiv) is added and the suspension is stirred rapidly at rt for 14 h. The mixture is diluted with ether and extracted with water. The aqueous phase is acidified to pH 1 with 1 M HCl, then extracted thoroughly with ethyl acetate. The organic phase is washed further with brine, dried over NaSO4 and concentrated. A hexane solution of TMSCHN2 (45 mL, 90 mmol, 2.0 M) is added to the red oil in 150 mL of ether and 20 mL of methanol. After 30 min, the mixture is concentrated, and subjected to flash chromatography (10% ethyl acetate in hexane, to give 1.72 g of a colorless oil. Analysis of the product by 1HNMR indicates a ˜2:3 mixture of the title compound and 5-t-butyl-2-furanoic acid methyl ester, which co-elute. The mixture is used without further purification. FTIR (film) cm−1 2965 (s), 2118 (s), 1723 (s); 1H NMR (CDCl3) d 5.99 (s, 1H), 3.80 (s, 3H), 1.25 (s, 9H).
- Step 3
- A Parr bottle containing 1.72 g of the mixture obtained from the above reaction and 0.5 g of Pd (10% on carbon) in 30 mL of cellosolve is successively evacuated and purged with H2 gas three times. The reaction mixture is then shaken under an atmosphere of H2 (40 psi) for 1 h, diluted with ethyl acetate and filtered through celite. The concentrated solution is flash chromatographed (20% ethyl acetate in hexane) to give 0.59 g of the amine (25% total yield) as a crystalline solid as well as 0.73 g of recovered methyl ester (34%). FTIR (film) cm−1 3330-2950 (s, br), 2850 (m), 1680 (s), 1637 (s), 1537 (s), 1346 (s), 1131 (s); 1H NMR (CDCl3) d 5.76 (s, 1H), 4.24 (br s, 2H), 1.29 (s, 9H); 13C NMR (CDCl3) d 178.7, 168.1, 160.5, 144.9 (br), 124.1, 98.3, 50.5, 32.8, 28.3.
- Step 4
- Phosgene (1.3 mL, 2.5 mmol, 193 M solution in toluene, 10 equiv) is added rapidly to a solution of 50 mg of the product from step 3 (0.25 mmol) in 1.0 mL of dry pyridine and 5 mL of dry toluene at rt under N2. After 30 min, the orange suspension is concentrated in vacuo, then successively charged with 1 ml of dry toluene and evaporated (2 times). Finally, 3 mL of toluene is added before the addition of 100 mg of toluidine (0.93 mmol, 3.7 equiv). The orange mixture is stirred overnight, diluted with ethyl acetate and washed with 1 M HCl, and brine, then dried (Na2SO4) and concentrated. The residue is purified by flash chromatography to give 80 mg of Example 22 (96%) as a pale yellow oil. FTIR (film) cm−1 3400-3200 (m, br), 2966 (s), 1676 (s), 1622 (s), 1536 (s), 1306 (s), 1097 (m); 1H NMR (CDCl3) d 8.68 (br s, 1H), 7.87 (br s, 1H), 7.27 (d, 2H, J=8.1 Hz), 7.11 (d, 2 H, J=8.1 Hz), 7.02 (s, 1H), 3.77 (s, 3H), 2.30 (s, 3H), 1.28 (s, 9H); 13C NMR (CDCl3) d 168.2, 160.5, 152.5, 137.7, 134.8, 134.0, 129.5, 126.0, 121.4, 100.1, 51.0, 33.0, 28.3, 20.6.
- 5-tert-Butyl-3-[3-(3,4-dichloro-phenyl)-ureido]-furan-2-carboxylic acid methyl ester (example 23) was synthesized according to this procedure using amino-3,4-dichlorobenzene in place of the toluidine.
- Method I
-
- Chlorotrimethylsilane (17.9 mL, 141 mmol, 2.5 equiv) is added in one portion to a solution of pyrrole-2-carboxylic acid (6.28 g, 56.5 mmol) in dry methanol (100 mL) under N2 at rt. After stirring overnight, the reaction mixture is concentrated in vacuo, redissolved in dichloromethane, washed with water, dried (Na2SO4) and concentrated to give 4.62 g of methyl pyrrole-2-carboxylate as a tannish semi-crystalline solid (65%), which was used without further purification. 1H NMR (CDCl3) d 9.3 (br s, 1H), 6.96 (br m, 1h), 6.92 (br m, 1 H), 6.29 (br q, 1H), 3.86 (s, 3H).
- Step 2
- Aluminum chloride (0.710 g, 5.33 mmol, 2.2 equiv) is added in one portion to a solution of methyl pyrrole-2-carboxylate (0.30 g, 2.42 mmol) in dry dichloroethane (12 mL) under N2 at rt. Subsequently, 2-chloro-2-methylpropane (0.26 mL, 2.42 mmol, 1.0 equiv) is added in one portion via syringe. After 2 h, the orange solution is quenched by slowly pouring into a saturated sodium bicarbonate solution. The resulting white suspension is extracted with diethyl ether (2×). The combined organic layers are dried (Na2SO4) and concentrated in vacuo to give 0.40 g of methyl 5-t-butylpyrrole-2-carboxylate as an off-white solid. Flash chromatography (40% hexane in dichloromethane) gives 0.3 6 g of the desired material as a white amorphous solid (81%). 1H NMR (CDCl3) d 8.82 (br s, 1H), 6.81 (t, 1H, J=3.3 Hz), 6.00 (t, 1H, J=3.3 Hz), 3.83 (s, 3H), 1.31 (s, 9H).
- Step 3
- Fuming nitric acid (0.57 mL, 13.6 mmol, 1.5 equiv) is added in one portion via syringe to a heterogeneous mixture of methyl-5-t-butylpyrrole-2-carboxylate (1.65 g, 9.10 mmol) in concentrated sulfuric acid (19 mL) under N2 at rt. After 1 h, the reaction is poured over ice-water and slowly neutralized to pH 7 with solid sodium carbonate, extracted with diethyl ether (2×), dried (Na2SO4) and concentrated in vacuo. The residue is subjected to flash chromatography (30% hexane in dichloromethane) to give 0.44 g of the desired product, in addition to 0.27 g of bis-nitrated product which has higher mobility. Rechromatographing of mixed fractions provides a further 0.22 g of methyl 5-t-butyl-3-nitropyrrole-2-carboxylate (32% total yield). Mono-nitrated: 1H NMR (CDCl3) d 9.22 (br s, 1H), 6.56 (d, 1H, J=3.3 Hz), 3.93 (s, 3H), 1.33 (s, 9H). Bis-nitrated: 1H NMR (CDCl3) d 9.17 (br s, 1H), 3.91 (s, 3H), 1.52 (s, 9H).
- Path A
- Step 4
- A Parr hydrogenation bottle fitted with a 16×100 mm disposable glass culture tube is charged with methyl-5-t-butyl-3-nitropyrrole-2-carboylate (14 mg, 0.062 mmol) in dry methanol (1 mL) and Pd (10% on carbon, 3 mg). The reaction is successively evacuated and purged with H2 gas three times. The reaction mixture is then shaken under an atmosphere of H2 (35 psi) for 1 h, diluted with dichloromethane and filtered through celite. The filtrate is concentrated in vacuo to give methyl 3-amino-5-t-butylpyrrole-2-carboxylate as a bright yellow oil (100%, crude yield). 1H NMR (CDCl3) d 7.89 (br s, 2H), 5.52 (d, 1H, J=2.8 Hz), 3.82 (s, 3H), 1.26 (s, 9H).
- Step 5
- Phosgene (0.32 mL, 0.62 mmol, 1.93 M solution in toluene, 10 equiv) is added rapidly to a solution of methyl-3-amino-5-t-butylpyrrole-2-carboxylate (12.2 mg, 0.062 mmol) and dry pyridine (247 mL, 3.06 mmol, 49.4 equiv) in dry toluene (1 mL). After 30 min, the orange suspension is concentrated in vacuo, then successively charged with 1 mL of dry toluene and evaporated (2×). Finally, toluene (2 mL) is added before the addition of p-toluidine (10 mg, 0.094 mmol). The mixture is heated at for 3 h before being concentrated in vacuo. The residue is purified by preparative TLC (2 plates, 0.25 mm thick, 20×20 cm, 2% methanol in dichloromethane). The major UV active band is isolated and the product is extracted with 5% methanol in dichloromethane to give 16.4 mg of Example 24 as a pale yellow amorphous solid (80%). FT-IR (KBr pellet) cm−1 3341 (s), 2947 (m), 1676 (s), 1583 (s), 1548 (s), 1456 (s), 1279 (s), 1208 (s), 1094 (s); MS (ES)=330.1 (m+1); 1H NMR (MeOD, CDCl3) d 8.45 (br s, 1H), 8.19 (br s, 1H), 7.27 (d, 2H, J=7.3 Hz), 7.14 (d, 2H, J=8.4 Hz), 6.95 (br s, 1H), 6.78 (d, 1H, j=2.8 Hz), 3.73 (s, 3H), 2.32 (s, 3H), 1.29 (s, 9H); 13C NMR (MeOD, CDCl3) d 161.89, 153.51, 147.62, 136.15, 132.17, 128.90, 119.58, 105.92, 97.36, 50.00, 31.45, 28.99, 19.65.
-
- Sodium hydroxide (0.21 g, 2.65 mmol, 50% aqueous, 6 equiv) is added to a cold (0-10° C.) solution of methyl 5-t-butyl-3-nitropyrrole-2-carboxylate (100 mg, 0.44 mmol), benzyltributyl ammonium bromide (158 mg, 0.44 mmol, 1 equiv), and dimethyl sulfate (46 mL, 0.49 mmol, 1.1 equiv) in dichloromethane (1 mL). After 5 min, the cooling bath is removed and the mixture is stirred for 4 h at rt. The reaction mixture is diluted with dichloromethane, washed with water (1×), 10% ammonium acetate (2×), dried (Na2SO4), and concentrated in vacuo to give a bright yellow oil. The residue is purified by flash chromatography (30% hexane in dichloromethane) to give 61 mg of methyl 5-t-butyl-1-methyl-3-nitropyrrole-2-carboxylate as a pale yellow oil which solidifies upon standing (62%). 1H NMR (CDCl3) d 6.47 (s, 1H), 3.92 (s, 3H), 3.80 (s, 3H), 1.38 (s, 9H).
- Step 7
- The nitro compound is reduced in a similar manner to that for methyl 3-amino-5-t-butylpyrrole-2-carboxylate to give 59 mg of methyl 3-amino-1-methyl-5-t-butylpyrrole-2-carboxylate as an oil (100%, crude yield). 1H NMR (CDCl3) d 5.48 (s, 1H), 4.34 (br s, 2H), 3.85 (s, 3H), 3.80 (s, 3H), 1.33 (s, 9H). 13C NMR (CDCl3) d 162.24, 148.95, 142.27, 107.39, 95.73, 50.55, 50.04, 34.73, 31.92, 29.67.
- Step 5
- Phosgene (1.45 mL, 2.80 mm0l, 1.93 M solution in toluene, 10 equiv) is added rapidly to a solution of methyl-3-amino-1-methyl-5-t-butylpyrrole-2-carboxylate (59 mg, 0.280 mmol) in dry pyridine (1 mL) and dry toluene (2 mL). Additional dry toluene (3 mL) is added to aid stirring of the heterogeneous mixture. after 30 min, the orange suspension is concentrated in vacuo, then successively charged with dry toluene (1 mL) and evaporated (2×). Finally, toluene (3 mL) is added before the addition of p-toluidine (111 mg, 1.04 mmol, 3.7 equiv). The resulting homogeneous mixture is stirred overnight, diluted with dichloromethane and washed with 1 M HCl. The aqueous layer was throuroghly back-extracted with dichloromethane (2×) and th combined organic phases are dried (Na2SO4), concentrated in vacuo, and purified by flash chromatography (10% 25% ethyl acetate in hexane) to give 66 mg of the Example 25 as a pale yellow solid (69%). FT-IR (KBr pellet) cm−1 2364 (s), 2335 (s), 1659 (m), 1579 (m), 1542 (m), 1354 (w), 1232 (w); 1H NMR (CDCl3) d 8.81 (br s, 1H), 7.26 (ap d, 3H (2H+1 NH), J=8.4 Hz), 7.11 (d, 2H, J=8.4 Hz), 6.80 (s, 1H), 3.88 (s, 3H), 3.64 (s, 3H), 2.31 (s, 3H), 1.35 (s, 9H); 13C NMR (CDCl3) d 161.95, 153.01, 148.59, 135.34, 133.97, 133.78, 129.54, 122.02, 108.82, 98.76, 50.38, 35.03, 32.12, 31.37, 29.76.
- Method J
-
- Triethyl amine (3.04 mL, 21.8 mmol) was added to a solution of methyl cyanoacetate (4.00 g, 40.4 mmol), sulfur (1.29 g, 40.4 mmol) and DMF (20 mL) at ambient temperature 3,3-dimethyl butraldehyde (5.08 g, 40.4 mmol) was added and stirred 1 h before being poured into water (200 mL). Solids were filtered off and filtrate was estracted with ethyl acetate. The acetate layer was filtered through a plug of silica gel and concentrated in vacuo. Purification via flash chromatography afforded 4.19 g (49%) of methyl 2-amino-5-t-butylthiophene 3-carboxylate.
- Step 2
- Methyl 2-amino-5-t-butylthiophene 3-carboxylate was then condensed with p-tolyl isocyanate under conditions described in Method A, Step 2 to produce 29 mg of Example 26 (18%). 1H NMR (CDCl3) d 10.37 (s, 1 h); 7.32 (d, J=8.5 Hz, 2H); 7.16 (d, j=8.1 Hz, 2H); 6.82 (s, 1H); 6.75 (bs, 1 h); 3.81 (s, 3H); 2.34 (s, 3H); 1.38 (s, 9H); mp 109-111° C.
- 5-tert-Butyl-2-(3-phenyl-ureido)-thiophene-3-carboxylic acid methyl ester (example 27) was synthesized according to this method using phenyl isocyanate in place of the p-tolyl isocyanate.
- 5-tert-Butyl-2-(3-(5-ethyl-[1,3,4]thiadiazol-2-yl)-ureido)-thiophene-3-carboxylic acid methyl ester (example 28) was synthesized according to this method step 1 then Method E using 2-amino-5-ethyl-1,3,4-thiadiazole in place of the 2-amino-5-trifluoromethyl-1,3,4-thiadiazole.
- 5-Isopropyl-2-(3-p-tolyl-ureido)-thiophene-3-carboxylic acid methyl ester (example 29) was synthesized according to this method step 1 using 3-methyl butraldehyde in place of 3,3-dimethyl butraldehyde followed by Method E using toluidine in place of the 2amino-5-trifluoromethyl-1,3,4-thiadiazole.
- 5-Isopropyl-2-[3-(5-methyl-thiophen-2-yl)-ureido]-thiophene-3-carboxylic acid methyl ester (example 30) was synthesized according to this method step 1 using 3-methyl butraldehyde in place of 3,3-dimethyl butraldehyde followed by Method F steps 2 and 3 using 5-methyl-2-thiophene carboxylic acid in place of 3-methyl-2-thiophene-carboxylic acid.
- The preceding examples can be repeated with similar success by substituting the generically or specifically described reactants and/or operating conditions of this invention for those used in the preceding examples.
- From the foregoing description, one skilled in the art can easily ascertain the essential characteristics of this invention, and without departing from the spirit and scope thereof, can make various changes and modifications of the invention to adapt it to various usages and conditions.
Claims (15)
Priority Applications (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US11/149,332 US20050256174A1 (en) | 1997-05-23 | 2005-06-10 | Raf kinase inhibitors |
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| US13/424,111 US20120178780A1 (en) | 1997-05-23 | 2012-03-19 | Raf kinase inhibitors |
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| US09/755,060 US20010006975A1 (en) | 1997-05-23 | 2001-01-08 | Raf kinase inhibitors |
| US11/149,332 US20050256174A1 (en) | 1997-05-23 | 2005-06-10 | Raf kinase inhibitors |
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| US09/755,060 Abandoned US20010006975A1 (en) | 1997-05-23 | 2001-01-08 | Raf kinase inhibitors |
| US11/149,332 Abandoned US20050256174A1 (en) | 1997-05-23 | 2005-06-10 | Raf kinase inhibitors |
| US12/619,878 Abandoned US20100063088A1 (en) | 1997-05-23 | 2009-11-17 | Raf Kinase Inhibitors |
| US13/424,111 Abandoned US20120178780A1 (en) | 1997-05-23 | 2012-03-19 | Raf kinase inhibitors |
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| Application Number | Title | Priority Date | Filing Date |
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| US09/083,399 Expired - Lifetime US6187799B1 (en) | 1997-05-23 | 1998-05-22 | Inhibition of raf kinase activity using aryl ureas |
| US09/755,060 Abandoned US20010006975A1 (en) | 1997-05-23 | 2001-01-08 | Raf kinase inhibitors |
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| Application Number | Title | Priority Date | Filing Date |
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| US12/619,878 Abandoned US20100063088A1 (en) | 1997-05-23 | 2009-11-17 | Raf Kinase Inhibitors |
| US13/424,111 Abandoned US20120178780A1 (en) | 1997-05-23 | 2012-03-19 | Raf kinase inhibitors |
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Also Published As
| Publication number | Publication date |
|---|---|
| US20100063088A1 (en) | 2010-03-11 |
| US20010006975A1 (en) | 2001-07-05 |
| US6187799B1 (en) | 2001-02-13 |
| US20120178780A1 (en) | 2012-07-12 |
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