US12392709B2 - Evaluating assays with optical inhomogeneities - Google Patents
Evaluating assays with optical inhomogeneitiesInfo
- Publication number
- US12392709B2 US12392709B2 US16/582,176 US201916582176A US12392709B2 US 12392709 B2 US12392709 B2 US 12392709B2 US 201916582176 A US201916582176 A US 201916582176A US 12392709 B2 US12392709 B2 US 12392709B2
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- image
- homogeneity
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- sensing surface
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/17—Systems in which incident light is modified in accordance with the properties of the material investigated
- G01N21/55—Specular reflectivity
- G01N21/552—Attenuated total reflection
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/84—Systems specially adapted for particular applications
- G01N21/88—Investigating the presence of flaws or contamination
- G01N21/8851—Scan or image signal processing specially adapted therefor, e.g. for scan signal adjustment, for detecting different kinds of defects, for compensating for structures, markings, edges
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/84—Systems specially adapted for particular applications
- G01N21/88—Investigating the presence of flaws or contamination
- G01N21/94—Investigating contamination, e.g. dust
-
- G—PHYSICS
- G06—COMPUTING OR CALCULATING; COUNTING
- G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
- G06T7/00—Image analysis
- G06T7/0002—Inspection of images, e.g. flaw detection
- G06T7/0012—Biomedical image inspection
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/01—Arrangements or apparatus for facilitating the optical investigation
- G01N21/15—Preventing contamination of the components of the optical system or obstruction of the light path
- G01N2021/155—Monitoring cleanness of window, lens, or other parts
- G01N2021/157—Monitoring by optical means
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/52—Use of compounds or compositions for colorimetric, spectrophotometric or fluorometric investigation, e.g. use of reagent paper and including single- and multilayer analytical elements
-
- G—PHYSICS
- G06—COMPUTING OR CALCULATING; COUNTING
- G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
- G06T2207/00—Indexing scheme for image analysis or image enhancement
- G06T2207/30—Subject of image; Context of image processing
- G06T2207/30004—Biomedical image processing
- G06T2207/30072—Microarray; Biochip, DNA array; Well plate
-
- G—PHYSICS
- G06—COMPUTING OR CALCULATING; COUNTING
- G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
- G06T2207/00—Indexing scheme for image analysis or image enhancement
- G06T2207/30—Subject of image; Context of image processing
- G06T2207/30168—Image quality inspection
Definitions
- Optical measurements may for instance be rejected, i.e. not be taken into account as valid values. In particular, all optical measurements may completely be rejected if an inhomogeneity was detected anywhere on the sensing surface. Alternatively, only those measurements may be rejected that refer to the respective region of interest in which the homogeneity-indicator deviated from the target range (while optical measurements for other regions may still be used). Finally, the rejection may only refer to a sub-area of the affected region of interest. Parts of this region that are sufficiently homogeneous may in this case still contribute to the final measurement results obtained for the assay.
- the aforementioned rejection of optical measurement (only) for a sub-area of a region of interest requires an appropriate procedure to discriminate between rejected and accepted parts of said region of interest.
- the sub-area of the region of interest that is rejected can be identified by a deviation of its image values from a given range of image values. If normally the region of interest should for example have gray values from some given interval, those parts (pixels) of the region of interest that have image values outside this interval might be rejected from the evaluation.
- the present invention further includes a computer program product which provides the functionality of any of the methods according to the present invention when executed on a computing device (also referred to hereinafter as an evaluation unit).
- the present invention includes a data carrier, for example a floppy disk, a hard disk, an EPROM, or a compact disc (CD-ROM), which stores the computer product in a machine readable form and which executes at least one of the methods of the invention when the program stored on the data carrier is executed on a computing device.
- a data carrier for example a floppy disk, a hard disk, an EPROM, or a compact disc (CD-ROM), which stores the computer product in a machine readable form and which executes at least one of the methods of the invention when the program stored on the data carrier is executed on a computing device.
- the data carrier may particularly be suited for storing the program of the computing device mentioned in the previous paragraph.
- the present invention also includes transmitting the computer product according to the present invention over a local or wide area network.
- FIG. 1 schematically shows a side view of a sensor device according to the present invention
- FIG. 4 shows images of a sensing surface with optical distortions before (left) and after (right) wetting by the sample fluid occurs
- FIG. 7 illustrates an inhomogeneous binding spot at different phases of an assay
- FIG. 8 shows the image values of the rim and the centre of the binding spot of FIG. 7 .
- FIGS. 9 - 11 each illustrate a method for evaluating an assay of a sample on a sensing surface according to the present invention.
- biosensors based on nanoparticle labels particularly based on magnetic beads that can be actuated with electromagnetic fields.
- biosensors for rapid handheld cardiac testing that allow the detection of cardiac troponin to diagnose myocardial infarct, or handheld parathyroid hormone (PTH) testing products that allow the detection of PTH for interoperative monitoring.
- PTH handheld parathyroid hormone
- FIG. 1 shows schematically a side view of a sensor device 100 according to the present invention.
- This sensor device 100 comprises an exchangeable (disposable) carrier or cartridge 110 with a sample chamber 111 in which a liquid sample can be provided next to a sensing surface 112 .
- the sensor device comprises an analyzer 150 with which optical measurements can be made at the sensing surface (if the cartridge 110 is properly placed on or in the analyzer).
- the analyzer 150 comprises an optical sensor unit with a light source 151 (e.g. an LED) for emitting an input light beam L 1 towards the sensing surface, a focusing lens 152 , and an image sensor 153 (2D camera) for detecting an output light beam L 2 returning from the sensing surface 112 .
- the measurement data (image or pixel values) generated by the image sensor 153 are processed by an evaluation unit 170 .
- the analyzer 150 comprises magnets 154 and 155 for generating a magnetic field in the sample chamber 111 .
- the sample comprises magnetic beads 1 functionalized with antibodies that can bind a specific analyte molecule.
- the beads 1 are attracted to the sensing surface 112 , where they can indirectly (by means of a captured analyte) or directly bind to capture probes (e.g. antibodies) printed on the surface.
- the number of bound beads is directly or inversely related to the amount of analyte molecules present in the sample.
- the beads can then be detected using any technique that is more sensitive to beads that are close to the surface.
- the detection technique is based on evanescent optical fields, namely frustrated total internal reflection (FTIR) as described e.g. in the WO 2008/155716 A1 in more detail.
- FTIR frustrated total internal reflection
- the cartridge/fluid interface may be illuminated with an input light beam as shown in FIG. 1 , but the scattered light from the particles near the surface is detected directly using a high NA objective located below the cartridge.
- FIG. 2 shows in this respect four FTIR images of spots S after magnetic nanoparticles have been bound to the inkjet-printed antibodies.
- the rectangles “ROI” indicate the regions of interest in which the signal (i.e. the pixel values) are evaluated.
- the top left image of FIG. 2 shows the desired case of a correctly positioned ROI in a relatively homogeneous spot S.
- the top right image of FIG. 2 shows a misplaced ROI in a relatively homogeneous spot S.
- the bottom images of FIG. 2 show spots S with clear inhomogeneities within the ROI.
- the grayness inside a (rectangular) region of interest (ROI) is averaged to obtain the final result for a considered binding spot S. It is preferred that the ROI covers most of the spot, to enable averaging over more image pixels to obtain a more accurate result. However, it is possible that the ROI contains inhomogeneities in the amount of bound particles on the surface, resulting in an incorrect assay result. Such inhomogeneities in the ROI can be caused by many reasons, e.g.:
- the present invention proposes to measure the homogeneity of the detected signal in the ROI before, during and/or after the assay. This measurement is done in at least one corresponding “homogeneity-image”, and the result of this measurement is expressed as at last one “homogeneity-indicator”. Based on these measurements (i.e. on the homogeneity-indicator(s)), the entire optical measurement, only certain spots, or only parts of the spots may be rejected.
- sucrose layer defects can be detected.
- the cartridge 110 containing the antibody spots S and the dried nanoparticles is inserted into the analyzer 150 before the sample is added. Therefore, an (homogeneity-) image of the cartridge surface 112 before it has been wetted can be obtained.
- a cause of inhomogeneity in this dry state could be e.g. damage to the (plastic) sensor surface or the entrance and exit windows of the optical path through the cartridge.
- Another cause could be damage to the protecting layer that is usually applied to preserve the antibody activity using long-term storage.
- a typical agent for such a protecting layer is sucrose. If the sucrose layer is damaged, the antibodies underneath could be likewise damaged.
- FIG. 3 shows an example of a “crack” C in the sucrose layer over the area where the antibody spots are printed.
- the crack C is only visible in the dry state, i.e. before wetting of the sensing surface by the sample ( FIG. 3 left). After wetting, the crack has vanished.
- the right image in FIG. 3 shows this state after the binding spots S have become visible due to bound magnet beads.
- the original position of the crack in the sucrose layer can still be seen as a lighter stripe over the antibody printed spots S, i.e. these areas show less binding of magnetic particles. These areas could be chosen to be excluded from the result calculations.
- defects in the optical path can be detected. This is illustrated in FIG. 4 , which shows two FTIR images of a cartridge before (left) and after wetting by the sample (right).
- FIG. 4 shows an example of such an inhomogeneity, namely a spot D of dirt, which can still be seen after the sample has been applied.
- inhomogeneities should not have an effect on the amount of particles binding to the spot and can be compensated for as the final measurements outcome is calculated as a relative change with respect to the grey value before magnetic actuation.
- at very low signal changes even e.g. a minute shift of the cartridge can result in a relatively large error if such an inhomogeneity is present in the ROI.
- such an inhomogeneity could also be caused by e.g. dirt, damage to the surface (e.g. a scratch) or the like somewhere else in the optical path (analyzer windows, lenses, sensor etc.). This could indicate a need of servicing/cleaning the analyzer. It is possible to store the shape and location of the inhomogeneity in the analyzer, such that if the same inhomogeneity after wetting is observed during successive measurements, the analyzer indicates that servicing, cleaning, or replacing is in order.
- air bubbles can be detected. This is illustrated in FIG. 5 , which shows an FTIR image with small air bubbles B, one close to a ROI.
- air bubbles B can be detected from a single image. Especially if there are small air bubbles on or close to the ROI ( FIG. 5 ), these might not be detected using especially designed wetting detector structures, which are usually not present close to the ROI.
- the homogeneity of particle density in the binding spot is determined. This is illustrated in FIG. 6 , which shows a sketch of a spot S with an inhomogeneity (left) and a corresponding intensity histogram of the indicated ROI (right).
- an inhomogeneity detected in a particular image frame (“homogeneity-image”) can be used to correct a result from a later or earlier frame in the measurement.
- a binding spot S consists of two areas: a main (center) area SI and an outer rim S 2 .
- the different regions contain a different density of functional antibodies, resulting in different rates at which the particles will bind to the surface.
- time t 2 the signal change measured for the rim might fall within the predefined homogeneity threshold (as indicated in FIG. 6 ), a more accurate result could be obtained when not taking this rim into account.
- the main area SI could however be more clearly distinguished from the rim S 2 .
- FIG. 7 shows the image values G (e.g. gray values) of the rim and the center, respectively.
- the area containing the inhomogeneity (the outer rim) that is detected at tl could also be excluded in t 2 .
- an inhomogeneity does not need to be determined from a single frame/measurement, but could also be determined from assessing or averaging multiple (homogeneity-) images.
- a preferred time would be shortly after a “wash pulse”, removing non-bound particles from the surface.
- FIG. 9 illustrates a method 900 of evaluating an assay of a sample on a sensing surface, executable by evaluation unit 170 , according to one or more embodiments.
- method 900 includes generating a homogeneity-image of the sensing surface, the homogeneity-image including a plurality of pixels, each pixel having an image value.
- method 900 includes determining whether image values of pixels within at least one region of interest in the homogeneity-image deviate from a given target range of image values.
- method 900 includes, at process block 906 , accepting the optical measurements from which the homogeneity-image was generated.
- method 900 includes, at process block 908 , rejecting the optical measurements from which the homogeneity-image was generated.
- FIG. 10 illustrates a method 1000 of evaluating an assay of a sample on a sensing surface, executable by evaluation unit 170 , according to one or more embodiments.
- Method 1000 is a continuation of method 900 from connector A.
- Method 1000 includes, at process block 1002 , storing as data on a data carrier a shape and a location of an indicated inhomogeneity present on the sensor surface via the homogeneity-image for subsequent comparison with a successively generated homogeneity-image to determine whether servicing, cleaning, or replacing of the sensor device is required.
- FIG. 11 illustrates a method 1100 of evaluating an assay of a sample on a sensing surface, executable by evaluation unit 170 , according to one or more embodiments.
- method 1100 includes generating a homogeneity-image of the sensing surface, the homogeneity-image including a plurality of pixels, each pixel having an image value.
- method 1100 includes subtractively combining the homogeneity-image with a reference image of at least one region of interest to generate a difference image.
- method 1100 includes determining whether pixels of the difference image exceed a given target range of image values.
- method 1100 includes, at process block 1108 , accepting the optical measurements from which the homogeneity-image was generated. In response to the pixels of the difference image exceeding the given target range, method 1100 includes, at process block 1110 , rejecting the optical measurements from which the homogeneity-image was generated.
- a non-homogeneous loading of an (inkjet-printed) spot of capture probes can result in an incorrect assay result in immunoassays.
- capture probes e.g. antibodies
- Methods to detect and to correct for such inhomogeneities and other inhomogeneities that can influence the measurement are provided by the present invention.
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Abstract
Description
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- determine an indicator of the image homogeneity within at least one region of interest of a “homogeneity-image” of the sensing surface that was generated by the image sensor;
- evaluating the optical measurements provided by the optical sensor unit in dependence on said homogeneity-indicator.
-
- If an initially present inhomogeneity vanishes during wetting, this may be due to irregularities within a soluble component, for example due to cracks in a protective sucrose layer above binding spots.
- If an inhomogeneity appears during wetting, this may be due to the presence of dirt or gas bubbles in the sample.
- If an inhomogeneity remains unchanged during wetting, it may be caused by disturbances in the optical path, for example by dirt or scratches on optical windows.
-
- a misplacement of the ROI over the spot (
FIG. 2 , top right); - an inhomogeneous loading of antibodies within the spot (e.g. caused by formation of salt crystals during drying of the printed spots);
- a partial damaging of the antibodies in the spot.
- a misplacement of the ROI over the spot (
Claims (15)
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US16/582,176 US12392709B2 (en) | 2011-04-28 | 2019-09-25 | Evaluating assays with optical inhomogeneities |
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EP11164118 | 2011-04-28 | ||
EP11164118 | 2011-04-28 | ||
EP11164118.9 | 2011-04-28 | ||
PCT/IB2012/052028 WO2012147021A1 (en) | 2011-04-28 | 2012-04-23 | Evaluating assays which optical inhomogeneities |
US201314113964A | 2013-10-25 | 2013-10-25 | |
US16/582,176 US12392709B2 (en) | 2011-04-28 | 2019-09-25 | Evaluating assays with optical inhomogeneities |
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PCT/IB2012/052028 Division WO2012147021A1 (en) | 2011-04-28 | 2012-04-23 | Evaluating assays which optical inhomogeneities |
US14/113,964 Division US10466163B2 (en) | 2011-04-28 | 2012-04-23 | Concurrently evaluating assays with optical inhomogeneities |
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US12392709B2 true US12392709B2 (en) | 2025-08-19 |
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EP (1) | EP2702392B1 (en) |
JP (1) | JP6190358B2 (en) |
CN (1) | CN103620392B (en) |
WO (1) | WO2012147021A1 (en) |
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WO2012004735A1 (en) * | 2010-07-09 | 2012-01-12 | Koninklijke Philips Electronics N.V. | Cartridge with large-scale manufacturing design |
KR101517594B1 (en) | 2013-10-16 | 2015-05-04 | (주)타스컴 | Biosensor |
ES3036495T3 (en) * | 2018-02-19 | 2025-09-19 | Hoffmann La Roche | Method and devices for performing an analytical measurement |
EP3948226A4 (en) * | 2019-04-05 | 2023-09-06 | Essenlix Corporation | TEST ACCURACY AND RELIABILITY IMPROVEMENT |
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JP2014512546A (en) | 2014-05-22 |
CN103620392B (en) | 2017-05-17 |
US20140051187A1 (en) | 2014-02-20 |
US10466163B2 (en) | 2019-11-05 |
EP2702392A1 (en) | 2014-03-05 |
JP6190358B2 (en) | 2017-08-30 |
EP2702392B1 (en) | 2019-10-30 |
US20200018689A1 (en) | 2020-01-16 |
WO2012147021A1 (en) | 2012-11-01 |
CN103620392A (en) | 2014-03-05 |
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