TWI900986B - Faecalibacterium prausnitzii, postbiotics, and use thereof - Google Patents
Faecalibacterium prausnitzii, postbiotics, and use thereofInfo
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Abstract
Description
本發明關於一種柔嫩梭狀桿菌、其後生元及其用途。The present invention relates to Clostridium tenella, its postbiotics and uses thereof.
益生菌泛指對生物體具有益處的細菌,目前認為其對於生物體的腸道健康、甚至是免疫系統都具有助益。近年研究指出,後生元(postbiotics),即益生菌代謝後的產物,是益生菌達到助益功效的重要分子,後生元包含胞泌體(extracellular vesicles)、有機酸、短鏈脂肪酸、胞外多醣、脂多醣、益生菌裂解物、維生素和胺基酸等等。後生元可幫助益生菌的生長或抑制有害微生物生長,以改善腸道菌相;後生元也具有降低發炎反應、抗氧化、以及減緩生物體高血糖等生物活性。此外,越來越多種不同的細菌被證實對生物體的健康具有助益,故益生菌所涵蓋的細菌種類也越來越廣。Probiotics broadly refer to bacteria that are beneficial to the body. They are currently believed to contribute to intestinal health and even the immune system. Recent studies have shown that postbiotics, the metabolic products of probiotics, are crucial molecules for achieving their beneficial effects. Postbiotics include extracellular vesicles, organic acids, short-chain fatty acids, exopolysaccharides, lipopolysaccharides, probiotic lysates, vitamins, and amino acids. Postbiotics can enhance the growth of probiotics or inhibit the growth of harmful microorganisms, thereby improving intestinal flora. They also exhibit biological activities such as reducing inflammation, providing antioxidant properties, and alleviating hyperglycemia. Furthermore, as an increasing number of different bacteria are proven to contribute to health, the term "probiotics" encompasses an ever-expanding range of bacterial species.
然而,不同菌種的益生菌、以及相同菌種但不同分離株的益生菌,其對生物體的助益都不完全相同,因此分離各種具不同生物活性的益生菌,一直是相關領域研究者的重要研發方向。However, probiotics of different strains, as well as probiotics of the same strain but different isolates, do not all provide the same beneficial effects on organisms. Therefore, isolating probiotics with distinct bioactivities has always been an important research and development direction for researchers in related fields.
本發明關於一種柔嫩梭狀桿菌( Faecalibacterium prausnitzii)、其後生元及其用途;柔嫩梭狀桿菌選自由NCKUMT001菌株與NCKUMT002菌株所構成的群組,其中 NCKUMT001菌株的寄存編號為NITE BP 03861、以及 NCKUMT002菌株的寄存編號為NITE BP 03862。 The present invention relates to a Clostridium prausnitzii strain, a postbiotic thereof, and uses thereof. The Clostridium prausnitzii strain is selected from the group consisting of strains NCKUMT001 and NCKUMT002, wherein the accession number of strain NCKUMT001 is NITE BP 03861, and the accession number of strain NCKUMT002 is NITE BP 03862.
本發明亦關於一種柔嫩梭狀桿菌的後生元,其包含柔嫩梭狀桿菌NCKUMT001菌株與柔嫩梭狀桿菌NCKUMT002菌株至少之一的後生元。The present invention also relates to a postbiotic for Clostridium tenella, comprising a postbiotic of at least one of Clostridium tenella NCKUMT001 and Clostridium tenella NCKUMT002.
本發明也關於一種含有柔嫩梭狀桿菌NCKUMT001菌株或是 NCKUMT002菌株後生元的組合物。The present invention also relates to a composition containing postbiotics from Clostridium tenella NCKUMT001 or NCKUMT002.
此外,本發明也關於柔嫩梭狀桿菌、柔嫩梭狀桿菌後生元於製備相關組成物、於抗發炎、保護腸道、改善脂質代謝並保護腸道感染誘發之損傷、減緩腸道感染症狀與降低腸道感染死亡率之用途,其中組成物包含柔嫩梭狀桿菌與柔嫩梭狀桿菌後生元其中至少之一,組成物可用於抑制發炎相關基因表現、維持腸道細胞完整性、以及促進脂質代謝相關基因表現。Furthermore, the present invention also relates to the use of Clostridium tenella and Clostridium tenella postbiotics in preparing compositions for anti-inflammation, intestinal protection, improved lipid metabolism, protection against damage induced by intestinal infections, alleviation of intestinal infection symptoms, and reduction of intestinal infection mortality. The compositions comprise at least one of Clostridium tenella and Clostridium tenella postbiotics, and the compositions can be used to inhibit the expression of genes associated with inflammation, maintain intestinal cell integrity, and promote the expression of genes associated with lipid metabolism.
於一實施例中,柔嫩梭狀桿菌的後生元包含NCKUMT001菌株或是NCKUMT002菌株的條件培養基、胞泌體(extracellular vesicles)、或其組合。In one embodiment, the postbiotics of Clostridium tenella include the conditioned medium, extracellular vesicles, or a combination thereof of the NCKUMT001 strain or the NCKUMT002 strain.
於一實施例中,柔嫩梭狀桿菌的後生元包含短鏈脂肪酸。In one embodiment, the postbiotics of Clostridium tenella comprise short-chain fatty acids.
於一實施例中,含有柔嫩梭狀桿菌NCKUMT001菌株或是NCKUMT002菌株後生元的組合物,進一步包含食品或是醫藥上可接受之載劑、賦形劑、輔劑、抗氧化劑或是食品添加劑其中至少之一。In one embodiment, the composition containing postbiotics from Clostridium tenella NCKUMT001 or NCKUMT002 further comprises at least one of a food or pharmaceutically acceptable carrier, excipient, adjuvant, antioxidant, or food additive.
於一實施例中,發炎相關基因包含血清澱粉樣蛋白A1(Serum amyloid A1)、介白素1-β(Interleukin-1β)、巨噬細胞炎性蛋白-2(Macrophage inflammatory protein-2,縮寫為MIP-2)與介白素-8 (Interleukin-8)。In one embodiment, the inflammation-related genes include serum amyloid A1, interleukin-1β, macrophage inflammatory protein-2 (MIP-2), and interleukin-8.
於一實施例中,脂質代謝相關基因包含過氧化物酶體增殖物活化受體γ基因。In one embodiment, the lipid metabolism-related gene comprises the peroxisome proliferator-activated receptor γ gene.
於一實施例中,腸道菌相代謝基因包含: 膽鹽水解酶(BSH)基因、羥基類固醇脫氫酶(HSDH)基因以及丁酸轉化酶(But)基因。In one embodiment, the intestinal bacterial metabolic genes include: bile salt hydrolase (BSH) gene, hydroxysteroid dehydrogenase (HSDH) gene and butyrate transaminase (But) gene.
於一實施例中,柔嫩梭狀桿菌後生元減緩病原感染導致之腸道發炎與腸道細胞緊密連接受損、並保護腸道感染誘發之損傷、減緩腸道感染症狀與降低腸道感染死亡率。In one embodiment, Clostridium tenella postbiotics reduce intestinal inflammation and damage to intestinal cell close connections caused by pathogen infection, protect against damage induced by intestinal infection, alleviate symptoms of intestinal infection, and reduce mortality from intestinal infection.
於一實施例中,柔嫩梭狀桿菌後生元促進細胞緊密連接蛋白(CLDN1)基因表現。In one embodiment, the Clostridium tenella postbiotic promotes cell tight junction protein 1 (CLDN1) gene expression.
藉此,本發明柔嫩梭狀桿菌、柔嫩梭狀桿菌的後生元,例如其胞泌體,具有減緩發炎反應、保護腸道健康、調控脂質代謝並保護腸道感染誘發之損傷、減緩腸道感染症狀與降低腸道感染死亡率的多元功效。Thus, the Clostridium tenella and its postbiotics, such as its secretosomes, of the present invention have multiple functions, including reducing inflammatory responses, protecting intestinal health, regulating lipid metabolism, protecting against damage induced by intestinal infections, alleviating symptoms of intestinal infections, and reducing mortality from intestinal infections.
為令本發明之技術手段其所能達成之效果,能夠有更完整且清楚的揭露,茲詳細說明如下,請一併參閱揭露之圖式。In order to provide a more complete and clear disclosure of the effects that can be achieved by the technical means of the present invention, a detailed description is given below, and please refer to the disclosed drawings.
一、柔嫩梭狀桿菌之菌株分離1. Isolation of Clostridium tenella strains
此實施例中進行試驗的NCKUMT001菌株以及 NCKUMT002菌株,皆是從人類糞便樣本中分離所得到;其培養條件為培養於BHIS培養基(Brain-Heart Infusion Broth)、培養溫度為37℃,並培養於無氧條件中。The NCKUMT001 and NCKUMT002 strains tested in this example were isolated from human fecal samples. They were cultured in BHIS (Brain-Heart Infusion Broth) at 37°C in an anaerobic environment.
又,將 NCKUMT001菌株、 NCKUMT002菌株進行16S rRNA的定序,經比對,其與柔嫩梭狀桿菌的標準菌株的16s rRNA具有98-99%的相似度,故判斷 NCKUMT001菌株與 NCKUMT002菌株為柔嫩梭狀桿菌;此試驗中的柔嫩梭狀桿菌標準菌株分別為柔嫩梭狀桿菌菌ATCC27768菌株(後簡稱ATCC27768菌株)與柔嫩梭狀桿菌APC918/95b菌株(後簡稱APC918/95b菌株),又ATCC27768菌株於美國典型培養務中心(American Type Culture Collection)的編號為ATCC27768,以及APC918/95b菌株於日本微生物保藏中心(Japan Collection of Microorganisms)的編號為JCM39207。請參見第一圖,為 NCKUMT001菌株、 NCKUMT002菌株以及ATCC 27768菌株的格蘭氏染色照片,三株菌株皆為格蘭氏陽性菌,且生長型態相似。Furthermore, 16S rRNA sequencing of strains NCKUMT001 and NCKUMT002 revealed 98-99% similarity between their 16S rRNA sequences and those of standard strains of Clostridium tenellae. Therefore, strains NCKUMT001 and NCKUMT002 were identified as Clostridium tenellae. The standard strains of Clostridium tenellae used in this experiment were Clostridium tenellae ATCC27768 (hereinafter referred to as ATCC27768) and Clostridium tenellae APC918/95b (hereinafter referred to as APC918/95b), respectively. The ATCC27768 strain is registered in the American Type Culture Collection as ATCC27768, and the APC918/95b strain is registered in the Japan Collection of Microorganisms as JPMC-918/95b. The number of the strain is JCM39207. See the first figure, which shows Gram-stained images of strains NCKUMT001, NCKUMT002, and ATCC 27768. All three strains are Gram-positive and exhibit similar growth patterns.
接著,萃取NCKUMT001菌株與 NCKUMT002菌株的基因體去氧核醣核酸(DNA),並使用可專一辨識第一型柔嫩梭狀桿菌之引子進行聚合酶鏈鎖反應(PCR),檢測二菌株的基因分型(Phylogroup);請參見第二圖(A)之洋菜凝膠電泳照片,ATCC27768菌株與NCKUMT002屬於第一型(Phylogroup I)之菌株,而NCKUMT001菌株是屬於第二型(Phylogroup II)的菌株。第二圖(B)為隨機擴增多型DNA聚合酶鏈鎖反應(random amplified polymorphic DNA PCR)的分析結果,此試驗係使用針對不同細菌基因的引子,進行PCR將產物進行洋菜膠凝膠電泳,觀察各菌株所擴增之DNA片段的情形;根據第二圖(B),NCKUMT002與ATCC 27768菌株所擴增出來的DNA片段較相近,而NCKUMT001菌株擴增出來的DNA片段與前述二菌株不同,也證實NCKUMT001菌株與另二株菌株為不同的分型。Next, genomic DNA was extracted from strains NCKUMT001 and NCKUMT002, and polymerase chain reaction (PCR) was performed using primers specific for Clostridium tenella type I to determine the genotypes (Phylogroups) of the two strains. See the agar electrophoresis image in Figure 2 (A), which shows that strains ATCC27768 and NCKUMT002 belong to type I, while strain NCKUMT001 belongs to type II. Figure 2 (B) shows the results of random amplified polymorphic DNA PCR analysis. This assay uses primers targeting different bacterial genes, conducts PCR, and then subjects the products to agar gel electrophoresis to observe the DNA fragments amplified by each strain. Figure 2 (B) shows that the DNA fragments amplified by strains NCKUMT002 and ATCC 27768 are similar, while the DNA fragments amplified by strain NCKUMT001 differ from those of the aforementioned two strains, confirming that strain NCKUMT001 and the other two strains are distinct genotypes.
又,NCKUMT001菌株與NCKUMT001菌株皆已寄存於日本之獨立行政法人製品評價技術基盤機構特許微生物寄託中心(NITE Patent Microorganisms Depositary National Institute of Technology and Evaluation),且NCKUMT001菌株的寄存編號為NITE BP 03861,NCKUMT002菌株的寄存編號為NITE BP 03862。Both strains NCKUMT001 and NCKUMT002 have been deposited with the NITE Patent Microorganisms Depositary National Institute of Technology and Evaluation in Japan. The deposit number for strain NCKUMT001 is NITE BP 03861, and the deposit number for strain NCKUMT002 is NITE BP 03862.
二、柔嫩梭狀桿菌營養分泌物之分離與分析2. Isolation and Analysis of Nutritional Secretions of Clostridium tenella
先將NCKUMT001菌株與NCKUMT002菌株的種子培養液,培養於mBHIS(modified Brain-Heart Infusion Broth))培養基、厭氧培養48小時;將菌液以4000 rpm離心10分鐘、收取其上清液,此上清液為柔嫩梭狀桿菌的條件培養基、並於後續稱為「營養分泌物(SUP)」,又第一圖(B)為於ATCC 27768菌株的營養分泌物(SUP)內觀察到的胞泌體(extracellular vesicles,後縮寫為EV)的電子顯微鏡觀察照片;又,請參見表一,可使用粒子濃度測定方法、並使用qNano儀器、測定ATCC 27768、NCKUMT001與NCKUMT002菌株營養分泌物(SUP)內胞泌體的濃度以及蛋白質濃度,表一之測量結果顯示三株菌株皆能產生胞泌體且胞泌體內皆含有蛋白質。Seed cultures of strains NCKUMT001 and NCKUMT002 were cultured in mBHIS (modified Brain-Heart Infusion Broth) medium under anaerobism for 48 hours. The culture medium was centrifuged at 4000 rpm for 10 minutes, and the supernatant was collected. This supernatant is the conditioned medium of Clostridium tenella and is subsequently referred to as "supplemental nutrient solution (SUP)." Figure 1 (B) shows an electron microscopic photograph of extracellular vesicles (EVs) observed in the SUP of ATCC 27768 strain. Also, see Table 1. ATCC 27768 can be measured using the particle concentration method and the qNano instrument. The concentrations of exosomes and proteins in the nutrient secretions (SUP) of strains 27768, NCKUMT001, and NCKUMT002 are shown in Table 1. The results show that all three strains can produce exosomes and that the exosomes contain proteins.
表一
請參見第三圖,為以即時定量反轉錄聚合酶鏈鎖反應(qRT-PCR)、偵測三株菌株短鏈脂肪酸(Short-chain fatty acids)轉化酶的相對表現量的分析結果;結果顯示,NCKUMT001菌株的短鏈脂肪酸轉化酶比ATCC27768菌與NCKUMT002菌株高。Please see the third figure, which shows the results of quantitative real-time reverse transcription polymerase chain reaction (qRT-PCR) analysis of the relative expression levels of short-chain fatty acids (SCFAs) in the three strains. The results show that the SCFAs in strain NCKUMT001 are higher than those in strains ATCC27768 and NCKUMT002.
請參見表二,為NCKUMT001菌株與NCKUMT002菌株的營養分泌物(SUP)中、短鏈脂肪酸的濃度分析結果,二菌株營養分泌物(SUP)中的丁酸含量皆遠高於空白培養液;又NCKUMT001菌株營養分泌物(SUP)中的甲酸乙級乙酸含量也遠高於空白培養液。Please see Table 2 for the analysis of short-chain fatty acid concentrations in the nutritional secretions (SUP) of strains NCKUMT001 and NCKUMT002. The butyrate content in the SUP of both strains was significantly higher than that in the blank culture medium. Furthermore, the formic acid, ethyl acetate, and acetic acid content in the SUP of strain NCKUMT001 were also significantly higher than those in the blank culture medium.
表二
又,表三為不同抗生、對於NCKUMT001菌株與NCKUMT002菌株的最小抑菌濃度測試結果,測試的抗生素包含Ertapenem、Imipenem、Clindamycin、Metronidazole與Ampicillin-Sulbactum,結果顯示兩菌株皆無抗藥性。Table 3 shows the minimum inhibitory concentration (MIC) test results for different antibiotics against NCKUMT001 and NCKUMT002 strains. The antibiotics tested included Ertapenem, Imipenem, Clindamycin, Metronidazole, and Ampicillin-Sulbactum. The results showed that both strains were not resistant.
表三
三、NCKUMT001菌株與NCKUMT001菌株之生物活性測試3. Bioactivity Test of NCKUMT001 Strain and NCKUMT001 Strain
(一)、抑制發炎反應(1) Inhibit inflammatory response
此試驗中,使用人類結腸癌細胞株(HT29細胞株)進行測試;先以100 mg/mL的脂多醣(Lipopolysaccharide,後縮寫為LPS)以及10 ng/mL的γ-干擾素(Interferon-γ,後縮寫為IFN-γ)刺激細胞,並於刺激後1小時於細胞培養液中加入包含10%(v/v)之NCKUMT001的營養分泌物(SUP),再將細胞繼續培養1小時,收集細胞並萃取細胞的RNA,再以即時定量反轉錄聚合酶鏈鎖反應(qRT-PCR)分析細胞內白血球介白素-8(Interleukin-8,IL-8)的mRNA表現量;請參見第四圖(A),添加菌株營養分泌物(SUP)的組別,其IL-8的表現量都明顯低於無添加營養分泌物(SUP)的組別。此結果顯示NCKUMT001菌株的營養分泌物(SUP)具有降低發炎物質表現的功效。In this study, human colorectal cancer cell line (HT29 cell line) was used for testing. First, 100 mg/mL of lipopolysaccharide (LPS) and 10 Cells were stimulated with 100 ng/mL of interferon-γ (IFN-γ). One hour after stimulation, a nutrient secretion (SUP) containing 10% (v/v) NCKUMT001 was added to the cell culture medium. The cells were cultured for an additional hour, harvested, and RNA was extracted. Real-time quantitative reverse transcription polymerase chain reaction (qRT-PCR) was then used to analyze the expression of interleukin-8 (IL-8) mRNA in the cells. As shown in Figure 4 (A), the IL-8 expression levels in the SUP-supplemented groups were significantly lower than those in the SUP-unsupplemented groups. These results indicate that the nutrient secretion (SUP) of the NCKUMT001 strain has the effect of reducing the expression of inflammatory substances.
又請參見第四圖(B),為以LPS與IFN-γ共同刺激HT29細胞株後,再於刺激1小時之後添加5%~40%(v/v) NCKUMT001菌株的營養分泌物(SUP),觀察細胞IL-8的mRNA表現量的差異;根據第四圖(B),添加5%(v/v)營養分泌物的組別,IL-8的表現量已顯著低於無添加營養分泌物組,又隨著營養分泌物的添加比例提高,IL-8的表現量也會隨之下降,具有劑量依存(dose dependent)現象。Please also refer to Figure 4 (B), which shows differences in IL-8 mRNA expression in HT29 cells after co-stimulation with LPS and IFN-γ. One hour after stimulation, 5% to 40% (v/v) of the NCKUMT001 strain's nutrient secretion (SUP) was added to the cells. Figure 4 (B) shows that IL-8 expression in the group supplemented with 5% (v/v) SUP was significantly lower than in the group without SUP. Furthermore, as the proportion of SUP added increased, IL-8 expression decreased, demonstrating a dose-dependent effect.
又,第四圖(C)中,以LPS與IFN-γ共同刺激HT29細胞株後,再將細胞與含有10%(v/v)NCKUMT001菌體的菌液共同培養,並觀察各組別細胞表現IL-8 mRNA的情形;其中,低濃度菌液組為使用於波長600 nm下之吸光值(簡稱O.D. 600)為「1」之菌液,高濃度菌液組為使用O.D. 600為「2」之菌液;根據第四圖(C),添加菌液的兩組別,其IL-8的表現量都低於未添加組,表示含有NCKUMT001菌體的菌液並不會促進發炎反應,甚至具有輕微抑制發炎反應的功效。Furthermore, in Figure 4 (C), HT29 cells were co-stimulated with LPS and IFN-γ and then co-cultured with a culture medium containing 10% (v/v) NCKUMT001 bacteria. The expression of IL-8 mRNA in each cell group was observed. The low-concentration culture medium group had an absorbance of 1 at 600 nm (O.D. 600), while the high-concentration culture medium group had an O.D. 600 of 2. As shown in Figure 4 (C), IL-8 expression in both culture medium-supplemented groups was lower than that in the unsupplemented group, indicating that the culture medium containing NCKUMT001 bacteria did not promote inflammation and even had a slightly inhibitory effect.
(二)、保護艱難梭狀桿菌誘發之損傷(2) Protection against Clostridium difficile-induced damage
接著,測試NCKUMT001菌株的營養分泌物(SUP)或是胞泌體(EV)對艱難梭狀桿菌( Clostridioides difficile,後縮寫為CDI)的ATCC43255菌株的保護效果;此試驗中,於HT29細胞於含有10%(v/v)艱難梭狀桿菌的培養上清液(CDI(SUP))中6h,同時加入20%(v/v) NCKUMT001菌株的營養分泌物(SUP)、或是胞泌體(EV)後,觀察細胞IL-8的mRNA相對表現量。根據第五圖(A),添加NCKUMT001菌株的營養分泌物(SUP)或是胞泌體(EV)的細胞株,其IL-8表現量明顯低於未添加的組別,即NCKUMT001菌株的營養分泌物(SUP)或是胞泌體(EV),確實具有降低發炎物質表現的功效。 Next, the protective effects of NCKUMT001's nutrient secretions (SUP) or endosomes (EV) against the ATCC43255 strain of Clostridioides difficile (CDI) were tested. In this assay, HT29 cells were cultured for 6 hours in a culture supernatant containing 10% (v/v) C. difficile (CDI(SUP)). Then, 20% (v/v) of NCKUMT001's nutrient secretions (SUP) or endosomes (EV) were added, and the relative expression of cellular IL-8 mRNA was measured. As shown in Figure 5 (A), cell lines supplemented with either nutrient secretions (SUP) or endosomes (EVs) of the NCKUMT001 strain expressed significantly lower levels of IL-8 than those without such supplementation. This suggests that nutrient secretions (SUP) or endosomes (EVs) of the NCKUMT001 strain do have the effect of reducing the expression of inflammatory substances.
又,第五圖(B)為柔嫩梭狀桿菌保護細胞膜完整性功效的測試,試驗中,先將HT-29細胞先培養於艱難梭狀桿菌的培養上清液(CDI(SUP))中,並同時加入20%(v/v) NCKUMT001菌株的營養分泌物(SUP)、或是胞泌體(EV)後,共同培養2hr;接著,再將細胞以FITC (Fluorescein isothiocyanate) 螢光染劑染色,此若細胞的細胞膜有損傷時,則螢光染劑就會進入細胞中並將細胞染色;收集染色後的細胞,並測量各組別細胞螢光強度,當該組細胞偵測到的螢光強度越強、表示該組細胞的細胞膜損傷較嚴重;根據第五圖(B),處理NCKUMT001菌株的營養分泌物(SUP)、或是胞泌體(EV)的組別,細胞的螢光強度明顯低於無處理組,且處理胞泌體(EV)組,其螢光強度為三組中最低,表示NCKUMT001菌株的營養分泌物(SUP)或是胞泌體(EV)皆可保護細胞膜免於艱難梭狀桿菌所造成的細胞膜損傷。Figure 5 (B) shows the efficacy of Clostridium tenella in protecting cell membrane integrity. In the experiment, HT-29 cells were first cultured in the culture supernatant of Clostridium difficile (CDI(SUP)), and 20% (v/v) of nutrient secretions (SUP) or endosomes (EV) of the NCKUMT001 strain were added at the same time. The cells were then cultured for 2 hours. Then, the cells were stained with FITC (Fluorescein isothiocyanate). Fluorescent dye staining. If the cell membrane is damaged, the fluorescent dye will enter the cell and stain the cell. Collect the stained cells and measure the fluorescence intensity of each group of cells. The stronger the fluorescence intensity detected by the cells, the more serious the cell membrane damage. According to Figure 5 (B), the nutritional status of the NCKUMT001 strain is treated. The fluorescence intensity of cells in the groups treated with either nutrient secretions (SUP) or endosomes (EV) was significantly lower than that of the untreated group. Furthermore, the fluorescence intensity of the EV-treated group was the lowest among the three groups, indicating that both nutrient secretions (SUP) and endosomes (EV) of the NCKUMT001 strain can protect the cell membrane from cell membrane damage caused by Clostridium difficile.
又,第五圖(C)為同樣處理下、各組別細胞表現細胞緊密連結相關蛋白質-水閘蛋白(claudin,CLDN1) mRNA的表現情形;請參見第五圖(C),處理NCKUMT001菌株營養分泌物的細胞(SUP)或是胞泌體(EV)的細胞,其水閘蛋白的表現顯著高於無處理組,即柔嫩梭狀桿菌之營養分泌物(SUP)或是胞泌體(EV)具有提高水閘蛋白表現、進而增進細胞之間緊密連接的功效。Furthermore, Figure 5 (C) shows the expression of claudin (CLDN1) mRNA, a protein involved in tight cell junctions, in cells from each group under the same treatment. As shown in Figure 5 (C), cells treated with NCKUMT001 strain nutrient secretions (SUP) or endosomes (EV) showed significantly higher CLDN1 expression than those in the untreated group, indicating that C. tenella nutrient secretions (SUP) or endosomes (EV) increase CLDN1 expression and, in turn, promote tight cell junctions.
(三)、動物實驗模型(3) Animal experimental models
此試驗中,以C57BL/6J鼠做為動物模型,觀察柔嫩梭狀桿菌對實驗鼠腸道健康等的影響。請一併參見第六圖(A),將此實驗開始之日定義為「第0日」、實驗開始前一天定義為「第-1日」、實驗開始後一天定義為「第1日」,以此類推,此外實驗鼠被分為以下幾組:In this study, C57BL/6J mice were used as an animal model to observe the effects of Clostridium tenella on their intestinal health. Please refer to Figure 6 (A) for details. The start date of this experiment is defined as "Day 0," the day before the experiment is defined as "Day -1," the day after the experiment is defined as "Day 1," and so on. The mice were divided into the following groups:
(1) 空白對照組:實驗鼠完沒有接受任何處理;(1) Blank control group: The experimental mice did not receive any treatment;
(2) CDI組:於實驗開始前5日,先以口服方式給予實驗鼠抗生素(請補充使用的抗生素種類與劑量Kanamycin 0.4 mg/mL; Gentamycin 0.0035 mg/mL; Colistin 0.057 mg/mL; Metronidazole 0.215 mg/mL; Vancomycin 0.045 mg/mL ),以破壞實驗鼠腸道正常菌叢,並於實驗開始後,以10 4CFU/ml 的艱難梭狀桿菌孢子感染小鼠; (2) CDI group: Five days before the start of the experiment, the experimental mice were given antibiotics orally (please provide the type and dosage of antibiotics used: Kanamycin 0.4 mg/mL; Gentamycin 0.0035 mg/mL; Colistin 0.057 mg/mL; Metronidazole 0.215 mg/mL; Vancomycin 0.045 mg/mL) to destroy the normal intestinal flora of the experimental mice. After the start of the experiment, the mice were infected with 104 CFU/ml of Clostridium difficile spores.
(3) CDI+EV組:於實驗開始前5日,先每日給予實驗鼠200uL的NCKUMT001菌株的胞泌體(EV),濃度為10 11/ml,並於感染艱難梭狀桿菌後,仍每日給予200uL的NCKUMT001菌株的胞泌體,直到實驗結束。 (3) CDI+EV group: 5 days before the start of the experiment, the experimental mice were given 200uL of NCKUMT001 strain EVs daily at a concentration of 10 11 /ml. After infection with Clostridium difficile, 200uL of NCKUMT001 strain EVs were continued daily until the end of the experiment.
於感染後第3日,犧牲仍存活的實驗鼠,並收集實驗鼠的腸組織,進行後續分析。On day 3 after infection, surviving mice were sacrificed and their intestinal tissues were collected for subsequent analysis.
請參見第六圖(B),為各組別實驗鼠存活率分析結果;將空白對照組的實驗鼠,於實驗結束時皆未死亡,因此其存活率為100%;於感染後第3日,CDI組實驗鼠的存活率為60%,而CDI+EV組實驗鼠的存活率與空白對照組相同,為100%,此結果顯示NCKUMT001菌株的胞泌體確實可避免感染艱難梭狀桿菌後造成的實驗鼠死亡。Please see Figure 6 (B) for the analysis of the survival rates of the experimental mice in each group. None of the experimental mice in the blank control group died at the end of the experiment, so their survival rate was 100%. On day 3 after infection, the survival rate of the experimental mice in the CDI group was 60%, while the survival rate of the experimental mice in the CDI+EV group was the same as the blank control group, at 100%. This result shows that the cytosomes of the NCKUMT001 strain can indeed prevent the death of experimental mice caused by infection with Clostridium difficile.
第六圖(C)為各組別實驗鼠腸道長度的分析結果,此實驗中是測量實驗鼠的小腸長度,與空白對照組相比,CDI組實驗鼠的大腸長度明顯下降,而CDI+EV組與CDI組相比,實驗鼠的腸道長度顯著增加;此結果顯示NCKUMT001菌株之胞泌體可以有效減緩小鼠因細菌感染所造成的腸道損傷。Figure 6 (C) shows the analysis of intestinal length in each group of experimental mice. In this experiment, the small intestine length of the experimental mice was measured. Compared with the blank control group, the large intestine length of the experimental mice in the CDI group was significantly decreased, while the intestinal length of the experimental mice in the CDI+EV group was significantly increased compared with the CDI group. This result shows that the exosomes of the NCKUMT001 strain can effectively alleviate intestinal damage caused by bacterial infection in mice.
請再參見第七圖(A)與第七圖(B),分別為實驗鼠腸組織內,血清澱粉樣蛋白A1(Serum amyloid A1,縮寫為SAA1)與介白素1-β(Interleukin-1β,縮寫為IL-1β)的表現量;根據試驗結果,CDI組實驗鼠腸組織內的SAA1與IL-1β表現量都顯著高於空白對照組,但是CDI+EV組實驗鼠腸組織中,此二種細胞激素的表現量又顯著低於CDI組,此結果顯示柔嫩梭狀桿菌的胞泌體有效降低腸道細胞發炎蛋白質的表現。Please refer to Figures 7 (A) and (B), which show the expression levels of serum amyloid A1 (SAA1) and interleukin-1β (IL-1β) in the intestinal tissues of experimental mice, respectively. According to the test results, the expression levels of SAA1 and IL-1β in the intestinal tissues of experimental mice in the CDI group were significantly higher than those in the blank control group. However, the expression levels of these two cytokines in the intestinal tissues of experimental mice in the CDI+EV group were significantly lower than those in the CDI group. This result shows that the cytosomes of Clostridium tenella effectively reduce the expression of inflammatory proteins in intestinal cells.
(四)柔嫩梭狀桿菌影響腸道菌相代謝(IV) Clostridium tenella affects intestinal bacterial metabolism
以下實驗的目的為測試柔嫩梭狀桿菌於腸道菌相代謝相關的生物活性,此實驗使用本案發明人所設立之體外醱酵系統、於此系統中培養人類腸道菌、以形成一模擬人類腸道菌相的菌叢組成(後簡稱為腸道菌叢組成),並觀察在不同的狀況下,腸道菌相相關代謝基因的表現變化。The purpose of the following experiment was to test the biological activity of Clostridium tenella related to intestinal bacterial metabolism. This experiment utilized an in vitro fermentation system developed by the inventors of this case. Human intestinal bacteria were cultured within this system to form a bacterial community composition that simulated the human intestinal flora (hereinafter referred to as the intestinal flora composition). The expression of metabolic genes related to intestinal flora was observed under different conditions.
此試驗中,共分成三組組別,分別為:(1) 空白對照組,此組中,體外醱酵系統中的腸道菌叢組成沒有接受任何處理;(2) 抗生素組,於體外醱酵系統中的腸道菌叢組成的培養液中內加入150mg/mL克林達黴素(clindamycin),並共同培養1日;以及(3) SUP組,此組是於體外醱酵系統中的腸道菌叢組成的培養液中內同時加入150mg/mL克林達黴素抗生素以及10%(v/v)的NCKUMT001菌株的營養分泌物(SUP)的培養液中1日。實驗結束後,收集各組別腸道菌叢組成的DNA,並以即時定量聚合酶鏈鎖反應,偵測並分析檢體內膽酸以及丁酸代謝相關基因之數量。In this experiment, there were three groups: (1) blank control group, in which the intestinal flora composition in the in vitro fermentation system did not receive any treatment; (2) antibiotic group, 150 mg/mL clindamycin was added to the culture medium of the intestinal flora composition in the in vitro fermentation system and cultured together for 1 day; and (3) SUP group, in which 150 mg/mL clindamycin antibiotic and 10% (v/v) nutrient secretion (SUP) of the NCKUMT001 strain were added to the culture medium of the in vitro fermentation system for 1 day. After the experiment, DNA from the intestinal flora of each group was collected and analyzed using real-time quantitative polymerase chain reaction to detect and analyze the levels of genes related to bile acid and butyrate metabolism in the samples.
請參見第八圖(A),為各組別腸道菌的基因數量分析圖,與空白對照組相比,處理抗生素的組別,腸道菌的基因數量明顯下降,但是SUP組中,腸道菌的基因數量明顯高於抗生素組,此結果顯示NCKUMT001菌株的營養分泌物(SUP)能減緩抗生素導致的腸道菌減少。Please see Figure 8 (A), which shows the gene count analysis of intestinal bacteria in each group. Compared to the blank control group, the gene count of intestinal bacteria in the antibiotic-treated group decreased significantly. However, the gene count of intestinal bacteria in the SUP group was significantly higher than that in the antibiotic group. This result shows that the nutrient secretion (SUP) of the NCKUMT001 strain can mitigate the reduction of intestinal bacteria caused by antibiotics.
請參見第八圖(B),為各組別腸道菌叢組成的二級膽酸轉化酶(hydroxysteroid dehydrogenase)的基因數量分析結果;與空白對照組相比,處理抗生素的腸道菌叢組成,其二級膽酸轉化酶的基因數量明顯下降,但是SUP組的腸道菌叢組成,二級膽酸轉化酶的基因數量高於抗生素組。Please see Figure 8 (B), which shows the gene abundance analysis of secondary cholate dehydrogenase (hydroxysteroid dehydrogenase) in the intestinal flora of each group. Compared to the blank control group, the gene abundance of secondary cholate dehydrogenase in the intestinal flora of the antibiotic-treated group decreased significantly, but the gene abundance of secondary cholate dehydrogenase in the intestinal flora of the SUP group was higher than that of the antibiotic group.
再請參見第八圖(C),為各組腸道菌叢組成的丁酸轉化酶 (butyryl-CoA:acetate CoA-transferase)的基因數量分析結果;與空白對照組相比,處理抗生素的腸道菌叢組成,丁酸轉化酶的基因數量明顯下降,但是SUP組的腸道菌叢組成,情形又明顯高於抗生素組。Please refer to Figure 8 (C), which shows the analysis of butyryl-CoA:acetate CoA-transferase gene abundance in the intestinal flora of each group. Compared to the blank control group, the number of butyryl-CoA:acetate CoA-transferase genes in the intestinal flora of the antibiotic-treated group decreased significantly, but the intestinal flora of the SUP group was significantly higher than that of the antibiotic group.
第八圖的結果顯示,本案之柔嫩梭狀桿菌可降低使用抗生素而造成的腸道菌叢死亡、以回復因使用抗生素而破壞的腸道菌代謝功能,進而促進腸道菌叢代謝膽酸以及短鏈脂肪酸的能力,進而維持腸道健康以及調節腸道發炎反應。The results in Figure 8 show that Clostridium tenella in this case can reduce the death of intestinal flora caused by antibiotic use, restore the metabolic function of intestinal bacteria damaged by antibiotic use, and promote the ability of intestinal flora to metabolize bile acid and short-chain fatty acids, thereby maintaining intestinal health and regulating intestinal inflammatory responses.
再請參見第九圖,係使用HT-29細胞測試柔嫩梭狀桿菌營養分泌物(SUP)保護艱難縮狀桿菌感染對細胞造成的影響;實驗包含四個組別,分別為:(1)空白對照組,此組的細胞沒有接受任何處理;(2)CDI組,此組細胞以艱難梭狀桿菌感染,感染之菌量為5 MOI (multiplicity of infection);(3)SUP組,細胞以艱難梭狀桿菌感染,並同時培養於含有10%(v/v) NCKUMT001菌株的營養分泌物(SUP)的培養液中4h;以及(4)EV組,細胞以艱難梭狀桿菌感染,並同時培養於含有10%(v/v) NCKUMT001菌株的胞泌體(EV)的培養液中4h。Please refer to Figure 9, which uses HT-29 cells to test the effect of Clostridium tenella nutrient secretion (SUP) on the protection of cells from C. difficile infection. The experiment includes four groups: (1) blank control group, in which cells did not receive any treatment; (2) CDI group, in which cells were infected with C. difficile at a multiplicity of infection (MOI) of 5; (3) SUP group, in which cells were infected with C. difficile and cultured in a medium containing 10% (v/v) (4) EV group, cells were infected with Clostridium difficile and cultured in culture medium containing 10% (v/v) EV of NCKUMT001 strain for 4 h.
第九圖的結果顯示,感染艱難縮狀桿菌的細胞,其過氧化物酶體增值物活化受體-γ (Peroxisome proliferator-activated receptor-γ,簡稱PPAR-γ)表現量會顯著下降、顯著低於空白對照組;但SUP組以及EV組的細胞的PPAR-γ量明顯回升,甚至表現量比空白對照組高。PPAR-γ為調控人體免疫反應的重要因子,除了具有減緩發炎反應的活性之外,亦具有促進脂肪代謝降低體重之功效。The results in Figure 9 show that in cells infected with B. difficile, the expression of peroxisome proliferator-activated receptor-γ (PPAR-γ) decreased significantly, falling significantly below that of the blank control group. However, PPAR-γ levels in the SUP and EV groups increased significantly, even exceeding those of the blank control group. PPAR-γ is a key factor in regulating the human immune response. In addition to its ability to reduce inflammation, it also promotes fat metabolism and reduces body weight.
(五) 柔嫩梭狀桿菌調控發炎反應(5) Clostridium tenella regulates inflammatory response
此試驗使用GES-1胃黏膜上皮細胞進行,先以脂多醣刺激GES-1胃黏膜上皮細胞株後,再將細胞與NCKUMT001的菌液(後簡稱「菌液組」、或是NCKUMT001的胞泌體(後稱為「EV組」)共同培養,再於培養後1日觀察各組別細胞的IL-8表現程度,其中,菌液組中的NCKUMT001添加量為MOI(multiplicity of infection) 100,而EV組的外密體添加濃度為 10 4顆胞泌體/細胞;請參見第十圖,第十圖(A)為細胞培養上清液的IL-8濃度分析結果,第十圖(B)為各組別細胞內IL-8的mRNA相對表現量分析結果,根據第十圖(A)與(B),脂多醣會刺激細胞表現IL-8,但是菌液組以及EV組的細胞,其IL-8的mRNA表現量以及分泌量會明顯下降,即將細胞與NCKUMT001菌液共同培養、或是與NCKUMT001的胞泌體共同培養時,會抑制脂多醣誘發的IL-8 mRNA表現以及IL-8蛋白質表現量,也代表NCKUMT001的菌液以及其胞泌體不僅不會促進發炎反應,甚至會顯著抑制發炎反應。 This study was conducted using GES-1 gastric epithelial cells. The GES-1 gastric epithelial cells were first stimulated with lipopolysaccharide and then co-cultured with NCKUMT001 bacterial solution (hereinafter referred to as the "bacterial solution group") or NCKUMT001 exosomes (hereinafter referred to as the "EV group"). The IL-8 expression of cells in each group was observed one day after culture. The amount of NCKUMT001 added to the bacterial solution group was an MOI (multiplicity of infection) of 100, while the exosomes added to the EV group was an MOI of 10. 4 cell secretomes/cell; please see Figure 10. Figure 10 (A) shows the IL-8 concentration analysis results of the cell culture supernatant, and Figure 10 (B) shows the relative expression analysis results of IL-8 mRNA in cells of each group. According to Figures 10 (A) and (B), LPS stimulates cells to express IL-8, but the IL-8 mRNA expression and secretion levels of cells in the bacterial solution group and EV group are significantly reduced. That is, when cells are co-cultured with NCKUMT001 bacterial solution or co-cultured with NCKUMT001 cell secretomes, LPS-induced IL-8 is inhibited. The mRNA expression and IL-8 protein expression levels also indicate that the NCKUMT001 bacterial solution and its endosomes not only do not promote inflammatory responses, but may even significantly inhibit inflammatory responses.
綜上,本發明柔嫩梭狀桿菌、其後生元及其用途,包含二株新的柔梭狀桿菌分離株,且兩株菌株的營養培養物與胞泌體具有降低腸胃道發炎反應、維持腸胃道健康以及調控脂質代謝的功效;於本案實施例中,柔嫩梭狀桿菌菌株的營養分泌物中包含多種短鏈脂肪酸,且其具有保護腸道細胞細胞膜完整性的功效,此外柔嫩梭狀桿菌的後生元,亦能促進脂質代謝相關基因的表現,以達到調控生物體的脂質代謝。In summary, the present invention discloses Clostridium tenella, its postbiotics, and uses thereof, comprising two novel isolates of Clostridium tenella. The nutritional cultures and secretions of these two strains have the ability to reduce gastrointestinal inflammation, maintain gastrointestinal health, and regulate lipid metabolism. In this embodiment, the nutritional secretions of the Clostridium tenella strains contain a variety of short-chain fatty acids that protect the integrity of intestinal cell membranes. Furthermore, the postbiotics of Clostridium tenella can promote the expression of genes related to lipid metabolism, thereby regulating lipid metabolism in an organism.
綜上所述,本發明柔嫩梭狀桿菌、其後生元及其用途,的確能藉由上述所揭露之實施例,達到所預期之使用功效,且本發明亦未曾公開於申請前,誠已完全符合專利法之規定與要求。爰依法提出發明專利之申請,懇請惠予審查,並賜准專利,則實感德便。In summary, the Clostridium tenella, its postbiotics, and their uses of the present invention can achieve the intended efficacy through the disclosed embodiments. Furthermore, this invention, which had not been disclosed prior to filing this application, fully complies with the provisions and requirements of the Patent Law. Therefore, we hereby file this invention patent application in accordance with the law and earnestly request your review and grant of the patent. We are truly grateful for this.
惟,上述所揭之說明,僅為本發明之較佳實施例,非為限定本發明之保護範圍;其;大凡熟悉該項技藝之人士,其所依本發明之特徵範疇,所作之其它等效變化或修飾,皆應視為不脫離本發明之設計範疇。However, the above description is only a preferred embodiment of the present invention and is not intended to limit the scope of protection of the present invention. Other equivalent changes or modifications made by persons skilled in the art based on the characteristic scope of the present invention should be considered as not departing from the design scope of the present invention.
無without
第一圖:柔嫩梭狀桿菌之格蘭氏染色分析照片、基因序列分析與胞泌體電子顯微鏡照片。 第二圖:柔嫩梭狀桿菌之Phylogroup分型分析圖。 第三圖:柔嫩梭狀桿菌之短鏈脂肪酸轉化酶表現分析圖。 第四圖 : 柔嫩梭狀桿菌、柔嫩梭狀桿菌之營養分泌物調控發炎反應物質分析圖 第五圖:柔嫩梭狀桿菌之營養分泌物與胞泌體影響細胞發炎物質、膜電位與胞緊密連接蛋白(CLDN1)基因表現分析圖。 第六圖:柔嫩梭狀桿菌之後生元影響腸道感染實驗動物存活率與盲腸長度分析圖。 第七圖:柔嫩梭狀桿菌之後生元影響腸道感染實驗動物發炎反應物質分析圖。 第八圖:柔嫩梭狀桿菌之後生元影響腸道菌相之數量、膽酸代謝以及短鏈脂肪酸代謝基因表現量分析圖。 第九圖:柔嫩梭狀桿菌之後生元影響實驗動物與脂質代謝相關基因表現分析圖。 第十圖:柔嫩梭狀桿菌之後生元影響胃壁細胞發炎之分析圖。 Figure 1: Gram stain analysis, gene sequence analysis, and electron microscopy images of Clostridium tenellae secretomes. Figure 2: Phylogroup analysis of Clostridium tenellae. Figure 3: Analysis of short-chain fatty acid translocase expression in Clostridium tenellae. Figure 4: Analysis of inflammatory response substances regulated by nutritional secretions of Clostridium tenellae and Clostridium tenellae. Figure 5: Analysis of how nutritional secretions and secretions of Clostridium tenellae affect cellular inflammatory substances, membrane potential, and expression of the tight junction protein (CLDN1) gene. Figure 6: Analysis of the effects of postbiotics from Clostridium tenellae on survival and cecal length in animals subjected to intestinal infection. Figure 7: Analysis of the effects of postbiotics from Clostridium tenella on inflammatory response substances in experimental animals with intestinal infection. Figure 8: Analysis of the effects of postbiotics from Clostridium tenella on the abundance of intestinal bacteria, and the expression of genes involved in bile acid metabolism and short-chain fatty acid metabolism. Figure 9: Analysis of the effects of postbiotics from Clostridium tenella on the expression of genes related to lipid metabolism in experimental animals. Figure 10: Analysis of the effects of postbiotics from Clostridium tenella on gastric wall cell inflammation.
寄存機構:日本獨立行政法人製品評價技術基盤機構特許微生物寄託中心(NITE Patent Microorganisms Depositary National Institute of Technology and Evaluation) 寄存日期:西元2023年3月20日 寄存編號:NCKUMT001菌株的寄存編號為NITE BP 03861, NCKUMT002菌株的寄存編號為NITE BP 03862。 Depository: NITE Patent Microorganisms Depositary, National Institute of Technology and Evaluation, Japan Deposit Date: March 20, 2023 Deposit Number: The deposit number for strain NCKUMT001 is NITE BP 03861, and the deposit number for strain NCKUMT002 is NITE BP 03862.
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