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TWI714378B - A large-angle optical raster scanning system for high speed deep tissue imaging - Google Patents

A large-angle optical raster scanning system for high speed deep tissue imaging Download PDF

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TWI714378B
TWI714378B TW108144297A TW108144297A TWI714378B TW I714378 B TWI714378 B TW I714378B TW 108144297 A TW108144297 A TW 108144297A TW 108144297 A TW108144297 A TW 108144297A TW I714378 B TWI714378 B TW I714378B
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TW202122782A (en
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孫啟光
卡地 巴
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國立臺灣大學
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Abstract

The field of view (FOV) of a nonlinear optical microscope (NLOM) is expected to be large enough for employing high-speed raster scanning on a mesoscale volumetric biological sample. Concurrently, three-dimensional (3D) visualization of fine sub-micron biological structures requires high enough lateral and axial resolutions, enforcing a high numerical aperture (NA) objective lens to be employed, thereby limiting the FOV of an NLOM. The invention is directed to a laser scanning NLOM, or to a large-angle optical raster scanning system, for deep biological tissue imaging with a large FOV of more than one square millimeter, up to 1.6 × 1.6 mm2, while simultaneously maintaining a sub-femtoliter effective 3D resolution by means of a high-NA and low magnification objective lens and further maintaining a high acquisition speed with synchronized sampling, limited by the repetition rate of a high repetition rate pulsed laser source, thereby exceeding Nyquist Criterion for resolving micro-optical resolution throughout a horizontal FOV of more than one millimeter.

Description

一種用於高速深組織成像的大角度光域掃描系統 A wide-angle optical domain scanning system for high-speed deep tissue imaging

本發明係關於一種用於高速深組織成像的大角度光域掃描系統。 The invention relates to a large-angle optical scanning system for high-speed deep tissue imaging.

與基於電荷耦合元件(CCD)的單光子成像系統相比,非線性光學顯微鏡(NLOM)的深穿透能力使其適用於三維(3D)成像。為了對中尺度體積的生物樣品進行高速光域掃描,一般期望非線性光學顯微鏡NLOM的視場(FOV)能足夠大。但是,為了擴展非線性光學顯微鏡(NLOM)的視場(FOV),不管是增大掃描角度、或是使用低倍率和低數值孔徑(NA)物鏡,都會降低光學分辨率上的成像品質。相反,精細的亞微米生物結構的3D可視化需要足夠高的橫向和軸向分辨率,從而需要採用高數值孔徑(NA)物鏡,此外,擴展的視場FOV必須通過滿足奈奎斯特準則(Nyquist-Criterion)的高速採樣來解決,因此,在不影響採集速度的情況下,具有亞飛升有效的3D分辨率的視場FOV擴展至超過1平方毫米則為一項艱鉅的任務。 Compared with single-photon imaging systems based on charge-coupled elements (CCD), the deep penetration capability of nonlinear optical microscopes (NLOM) makes it suitable for three-dimensional (3D) imaging. In order to perform high-speed optical domain scanning of biological samples with a mesoscale volume, it is generally expected that the field of view (FOV) of the nonlinear optical microscope NLOM can be large enough. However, in order to expand the field of view (FOV) of a nonlinear optical microscope (NLOM), whether increasing the scanning angle or using a low magnification and low numerical aperture (NA) objective lens will reduce the imaging quality on the optical resolution. On the contrary, 3D visualization of fine submicron biological structures requires sufficiently high lateral and axial resolution, which requires the use of high numerical aperture (NA) objectives. In addition, the extended field of view FOV must meet the Nyquist criterion (Nyquist criterion). -Criterion) high-speed sampling. Therefore, without affecting the acquisition speed, it is a difficult task to extend the field of view FOV with sub-feeling effective 3D resolution to more than 1 square millimeter.

先前已經報導了幾種用於中尺度成像的技術。Balu,Mihaela等人,“基於非線性光學顯微鏡的成像平台,用於快速掃描大面積組織”。 專利公開號:WO 2018/075562 A1中公開了一種非線性光學(NLO)顯微鏡設計,其擴展視場為0.8×0.8mm2=0.64mm2,亦即小於一平方毫米,分辨率為1600×1600像素數,因此在跨越0.8×0.8mm2之整個視場(FOV)中,對於0.5±0.2μm的亞微米橫向分辨率,無法以一影像大小為0.5mm滿足奈奎斯特準則。 Several techniques for mesoscale imaging have been reported previously. Balu, Mihaela, and others, "An imaging platform based on a nonlinear optical microscope for rapid scanning of large areas of tissue." Patent Publication Number: WO 2018/075562 A1 discloses a non-linear optics (NLO) microscope design with an extended field of view of 0.8×0.8mm 2 =0.64mm 2 , which is less than one square millimeter, and a resolution of 1600×1600 Therefore, in the entire field of view (FOV) spanning 0.8×0.8 mm 2 , for a submicron lateral resolution of 0.5±0.2 μm, the Nyquist criterion cannot be satisfied with an image size of 0.5 mm.

數位研究人員已經公開了幾種非線性光學顯微鏡NLOM,它們通過使用低數值孔徑(NA)(

Figure 108144297-A0305-02-0005-4
0.6)物鏡將視場(FOV)擴展到幾平方毫米,從而導致軸向分辨率差(進而導致3D分辨率差),原因是軸向分辨率與物鏡的數值孔徑(NA)呈反平方關係。 Several researchers have published several non-linear optical microscopes, NLOM, which use low numerical aperture (NA) (
Figure 108144297-A0305-02-0005-4
0.6) The objective lens expands the field of view (FOV) to several square millimeters, resulting in poor axial resolution (and thus poor 3D resolution), because the axial resolution and the numerical aperture (NA) of the objective are inversely squared.

Jonathan R.Bumstead等人,“使用光學不變分析設計大視野的兩光子顯微鏡”,Neurophoton,5(2),025001(2018),DOI:10.1117/1.NPh.5.2.025001中,公開了一種使用光不變性分析的雙光子顯微鏡,產生的視場FOV直徑為7mm,橫向和軸向分辨率分別為1.7μm和28μm,其係使用4倍,0.22數值孔徑NA的物鏡來達成。此外,要解決直徑為7mm的FOV上的1.7μm的橫向分辨率,亦即4.95×4.95mm2的方形視場FOV,奈奎斯特準則Nyquist Criterion需要大於5800×5800的像素數,但是,它們受到每秒1M個樣本的數據採集速度的限制。 Jonathan R. Bumstead et al., "Designing a two-photon microscope with a large field of view using optical invariant analysis", Neurophoton, 5(2), 025001 (2018), DOI: 10.1117/1.NPh.5.2.025001, discloses one Using the two-photon microscope for light invariance analysis, the FOV diameter of the field of view produced is 7mm, and the lateral and axial resolutions are 1.7μm and 28μm, respectively. It is achieved by using a 4x objective lens with a 0.22 numerical aperture NA. In addition, to solve the lateral resolution of 1.7μm on the FOV with a diameter of 7mm, that is, the square field of view FOV of 4.95×4.95mm 2 , the Nyquist criterion Nyquist Criterion needs more than 5800×5800 pixels, but they Limited by the data collection speed of 1M samples per second.

Shin-Ichiro Terada等人,“具有在後物鏡空間中移動的微光學裝置的超寬場雙光子成像”,Nature Communications(2018)9:3550,DOI:10.1038/s41467-018-06058-8中,公開了一種在後目鏡空間內使用微光機械裝置的雙光子成像系統,導致視場FOV為1.2×3.5mm2,通過對多個遙遠區域(>6mm)進行順序成像將其縫合在一起X軸方向的橫向分辨率為1.26±0.03 μm,Y軸方向的橫向分辨率為0.88±0.07μm,而10X,0.6數值孔徑(NA)物鏡的軸向分辨率為9.96±0.12μm,進一步受到數據採集速度的限制。 Shin-Ichiro Terada et al., "Ultra-wide-field two-photon imaging with a micro-optic device moving in the rear objective lens space", Nature Communications (2018) 9: 3550, DOI: 10.1038/s41467-018-06058-8, A two-photon imaging system using a low-optic mechanical device in the rear eyepiece space is disclosed, resulting in a FOV of 1.2×3.5mm 2 , which is stitched together by sequential imaging of multiple remote areas (>6mm). X axis The lateral resolution in the direction is 1.26±0.03 μm, the lateral resolution in the Y-axis direction is 0.88±0.07 μm, and the axial resolution of the 10X, 0.6 numerical aperture (NA) objective lens is 9.96±0.12 μm, which is further affected by the data acquisition speed limits.

因此,現有技術受到小於一平方毫米視場(FOV)的限制,或者軸向分辨率較差,及/或較慢的數據採集速度以滿足奈奎斯特準則,因此不適合用高分辨率3D成像,即無法在超過1平方毫米視場(FOV)中具備符合亞飛升奈奎斯特有效3D分辨率。 Therefore, the existing technology is limited by less than one square millimeter field of view (FOV), or the axial resolution is poor, and/or the slower data acquisition speed meets the Nyquist criterion, so it is not suitable for high-resolution 3D imaging. That is, it cannot have an effective 3D resolution that meets the sub-feeling Nyquist in a field of view (FOV) of more than 1 square millimeter.

在本領域中期望提供一種非線性光學顯微鏡NLOM以克服上述問題。 It is desired in the art to provide a nonlinear optical microscope NLOM to overcome the above-mentioned problems.

本發明旨在提供一種用於高速深組織成像的大角度光域掃描系統,其具有大於一個平方毫米之擴展的視場(FOV),同時保持由超過奈奎斯特準則的高速資料採集系統來解析的高效3D分辨率。在這樣做的同時,為了不影響速度,將每個三維像素(voxel)採集與具有高重複率的脈衝雷射源的每個光脈衝同步,從而將採集速度推升到最大,即便是受限於脈衝雷射源的重複率。本發明採用了高數值孔徑(NA)和低放大率的物鏡,其分辨率沒有受到損害。為了將視場(FOV)擴展到超過一平方毫米,本發明提供一種特殊的光學設計,該技術在快速X軸和慢速Y軸上都支持大掃描角,同時在整個視場(FOV)上保持低光學像差。 The present invention aims to provide a wide-angle optical domain scanning system for high-speed deep tissue imaging, which has an extended field of view (FOV) greater than one square millimeter, while maintaining a high-speed data acquisition system that exceeds the Nyquist criterion. Analytical and efficient 3D resolution. In doing so, in order not to affect the speed, each voxel acquisition is synchronized with each light pulse of a pulsed laser source with a high repetition rate, thereby pushing the acquisition speed to the maximum, even if it is limited The repetition rate of the pulsed laser source. The present invention uses a high numerical aperture (NA) and low magnification objective lens, and its resolution is not compromised. In order to extend the field of view (FOV) to more than one square millimeter, the present invention provides a special optical design that supports large scanning angles on both the fast X axis and the slow Y axis, and at the same time on the entire field of view (FOV) Maintain low optical aberrations.

在擴大掃描角度(從而擴大視場(FOV))的同時,共振掃描鏡的非線性速度會導致沿快速X軸的圖像失真,從而迫使人們在不等時的時間點進行採樣,從而保持均勻的像素速率,從而降低了像素數,不足以滿足具有微光學分辨率的大視場FOV的奈奎斯特準則。本發明涉及在等距時間 點在整個掃描範圍內超過奈奎斯特採樣,然後藉助圖形處理單元(GPU)加速的內插演算法來即時修復共振掃描器引起的失真。與視場(FOV)的中心相比,在邊緣附近收集了更多的數據點時(由於在共振掃描鏡的整個非線性運動中進行了等距採樣),且由於有限的物鏡場數目,因此可以進一步補償於靠近FOV邊緣處之漸暈導致的信號強度降低。 While expanding the scanning angle (thus expanding the field of view (FOV)), the nonlinear speed of the resonant scanning mirror will cause image distortion along the fast X axis, which forces people to sample at unequal time points to maintain uniformity The pixel rate, which reduces the number of pixels, is not enough to meet the Nyquist criterion for a large field of view FOV with micro-optical resolution. The present invention relates to The point exceeds the Nyquist sampling in the entire scanning range, and then uses the graphics processing unit (GPU) accelerated interpolation algorithm to instantly repair the distortion caused by the resonance scanner. Compared with the center of the field of view (FOV), when more data points are collected near the edge (due to equidistant sampling in the entire nonlinear motion of the resonant scanning mirror), and due to the limited number of objective lens fields, It can further compensate for the decrease in signal intensity caused by vignetting near the edge of the FOV.

根據本發明,為了解決現有技術中遇到的上述問題,揭露出一種用於高速深組織成像的大角度光域掃描系統,具有至少一個平方毫米的視場(FOV),且具有以超越奈奎斯特(Nyquist)之同步採樣解析的亞飛升(sub-femtoliter)有效3D分辨率,包括:一或多個(第1至第n個)脈衝雷射源,用於發射一或多個中心波長為λn的雷射束,並且第n個脈衝雷射源的超越奈奎斯特重複率為Rn

Figure 108144297-A0305-02-0007-5
An×Nn,其中An是奈奎斯特(Nyquist)限制的採樣率,其係以4倍的水平FOV乘以共振掃描器頻率再除以理論上受目鏡限制的橫向分辨率,用以在超越>1mm的水平視場(FOV)上解析微光學分辨率,並且Nn
Figure 108144297-A0305-02-0007-6
1的整數來表示每個三維像素(voxel)的雷射脈衝數;一諧振掃描鏡,其光學耦合到該一或多個脈衝雷射源;一檢流計掃描鏡(galvanometer scanning mirror),光學耦合到該諧振掃描鏡;一掃描透鏡,光學耦合到該檢流計掃描鏡;一專用管透鏡,包括三個平凸透鏡,每個平凸透鏡的有效焦距為500mm,該等透鏡組合在一起並光學耦合到該掃描透鏡;一與該專用管透鏡光學耦合的高數值孔徑(NA)和低倍物鏡,用以光域掃描一體積組織樣本,並用以收集樣本產生的一熒光信號,該熒光信號被導引 至一光電倍增管(PMT)以產生一電信號;以及一資料採集系統,耦合以從該光電倍增管(PMT)接收該電信號,其中每個採樣事件分別與來自一脈衝雷射源或最高重複率脈衝雷射源(如果有一或多個脈衝雷射源)的每個光脈衝同步,其中,該掃描透鏡和該專用管透鏡構成了一低倍率的擴束器,從而最大化了該視場(FOV),但同時在高數值孔徑(NA)和低倍率物鏡的一後孔徑上提供了擴大的光束大小,以保持高激發數值孔徑(NA),因而具有高分辨率。 According to the present invention, in order to solve the above-mentioned problems encountered in the prior art, a wide-angle optical domain scanning system for high-speed deep tissue imaging is disclosed, which has a field of view (FOV) of at least one square millimeter and has an ability to exceed Nyquist The sub-femtoliter effective 3D resolution of Nyquist's synchronous sampling analysis, including: one or more (1st to nth) pulsed laser sources for emitting one or more center wavelengths Is a laser beam of λ n , and the trans-Nyquist repetition rate of the n-th pulsed laser source is R n
Figure 108144297-A0305-02-0007-5
A n ×N n , where A n is the sampling rate limited by Nyquist, which is 4 times the horizontal FOV multiplied by the resonant scanner frequency and divided by the theoretical lateral resolution limited by the eyepiece. To resolve the micro-optical resolution in a horizontal field of view (FOV) beyond >1mm, and N n is
Figure 108144297-A0305-02-0007-6
An integer of 1 represents the number of laser pulses per voxel; a resonant scanning mirror, which is optically coupled to the one or more pulsed laser sources; a galvanometer scanning mirror, optical Coupled to the resonant scanning mirror; a scanning lens, optically coupled to the galvanometer scanning mirror; a special tube lens, including three plano-convex lenses, each plano-convex lens has an effective focal length of 500mm, and these lenses are combined and optical Coupled to the scanning lens; a high numerical aperture (NA) and low power objective lens optically coupled to the dedicated tube lens for scanning a volume of tissue sample in the optical domain, and for collecting a fluorescence signal generated by the sample, the fluorescence signal is Guided to a photomultiplier tube (PMT) to generate an electrical signal; and a data acquisition system coupled to receive the electrical signal from the photomultiplier tube (PMT), wherein each sampling event is associated with a pulsed laser source Or the highest repetition rate pulsed laser source (if there are one or more pulsed laser sources) each light pulse is synchronized, wherein the scanning lens and the special tube lens constitute a low-magnification beam expander, thereby maximizing The field of view (FOV), but at the same time provides an enlarged beam size on a rear aperture of a high numerical aperture (NA) and a low magnification objective lens to maintain a high excitation numerical aperture (NA), thus having a high resolution.

100:大角度光域掃描系統 100: Large-angle optical domain scanning system

101:輸入雷射束 101: Input laser beam

102:共振掃描鏡 102: Resonance Scanning Mirror

103:檢流計掃描鏡 103: Galvanometer Scanning Mirror

104:掃描透鏡 104: Scanning lens

105,106,108:轉向鏡 105, 106, 108: steering mirror

107:專用管透鏡 107: dedicated tube lens

109:高NA(數值孔徑)和低倍物鏡 109: High NA (numerical aperture) and low magnification objectives

110:焦距平面 110: focal length plane

111:二向色分束器 111: Dichroic beam splitter

112:聚焦透鏡 112: Focusing lens

113,114:轉向鏡 113, 114: steering mirror

115:聚焦透鏡 115: focusing lens

116:PMT感光區域 116: PMT photosensitive area

117:跨阻放大器 117: Transimpedance amplifier

119:共振掃描鏡控制器 119: Resonant Scanning Mirror Controller

200:資料採集系統 200: Data Acquisition System

圖1(a)和1(b)分別示出了根據本發明的大角度光域掃描和熒光檢測光學器件。圖1(c)顯示了控制和資料採集系統的方塊圖,其中包含控制電子設備。 Figures 1(a) and 1(b) respectively show a wide-angle optical scanning and fluorescence detection optical device according to the present invention. Figure 1(c) shows a block diagram of the control and data acquisition system, which contains the control electronics.

圖2(a),2(b)和2(c)分別顯示了在X方向上的離軸為±7.7°時、在X和Y方向上的離軸為0°時、及在Y方向上的離軸為±7.7°時其光學傳遞函數(OTF)的模數與空間頻率(週期/mm)的關係。 Figures 2(a), 2(b) and 2(c) respectively show when the off-axis in the X direction is ±7.7°, when the off-axis in the X and Y directions is 0°, and in the Y direction The relationship between the modulus of the optical transfer function (OTF) and the spatial frequency (period/mm) when the off-axis of is ±7.7°.

圖3(a)和3(b)分別顯示了橫向和軸向截面圖,其平均橫截面為25個奈米小球子(beads)(直徑為220nm),誤差線表示標準偏差。高斯擬合(Gaussian-fitting)分別產生0.483μm和1.997μm的有效雙光子橫向和軸向分辨率(即全寬半峰(FWHM)),亦即有效的3D分辨率<0.5飛升,且橫向分辨率之標準偏差和標準誤差的平均值分別為0.0342μm和0.0068μm,軸向分辨率的平均值分別為0.3027μm和0.0605μm。 Figures 3(a) and 3(b) show the transverse and axial cross-sectional views, respectively, with an average cross-section of 25 nano-beads (with a diameter of 220 nm), and the error bar represents the standard deviation. Gaussian fitting (Gaussian-fitting) produces effective two-photon lateral and axial resolutions of 0.483μm and 1.997μm respectively (ie full width and half maximum (FWHM)), that is, effective 3D resolution <0.5 soaring, and lateral resolution The average values of the standard deviation and standard error of the rate are 0.0342μm and 0.0068μm, and the average values of the axial resolution are 0.3027μm and 0.0605μm, respectively.

圖4(a)和4(b)分別以傾斜和俯視圖示出了在本發明的大角度光域掃描系統下掃描的tdTomato陽性離體小鼠髓質的體積組織樣品的3D呈現體積。圖4 (c)顯示了從圖4(b)所示的原始體積裁剪的3D縮放區域。圖4(d)顯示了通過在170μm至173μm的深度範圍內的10個幀的重疊而形成的圖像,該圖像是從與圖4(a)和(b)中描述的相同體積中摘取的。圖4(e)描繪了從圖4(d)所示的原始圖像裁剪的縮放區域。 Figures 4(a) and 4(b) respectively show the 3D rendering volume of the volume tissue sample of the tdTomato positive isolated mouse medulla scanned under the large-angle optical domain scanning system of the present invention in oblique and top views. Figure 4 (c) shows the 3D zoom area cropped from the original volume shown in Figure 4(b). Figure 4(d) shows an image formed by the overlap of 10 frames in the depth range of 170μm to 173μm, which is extracted from the same volume as described in Figure 4(a) and (b) Taken. Figure 4(e) depicts the zoomed area cropped from the original image shown in Figure 4(d).

表1示出了根據本發明的具有全場超越奈奎斯特可分辨性的資料採集系統的性能。 Table 1 shows the performance of the data acquisition system with full-field resolution beyond Nyquist according to the present invention.

表2顯示了資料採集系統與目前系統(Leica SP8 Confocal)的比較。 Table 2 shows the comparison between the data acquisition system and the current system (Leica SP8 Confocal).

表3示出了根據本發明的用於基於C++的GPU加速的控制和獲取軟體的軟體依賴性和預備硬體。 Table 3 shows the software dependencies and preparatory hardware for controlling and acquiring software for C++-based GPU acceleration according to the present invention.

根據本發明,使用ZEMAX對大角度光域掃描系統(如圖1(a),1(b)所示)進行了優化,在高NA和低倍物鏡(Olympus-XLUMPlanFl,20X,0.95W,有效焦距(EFL)=9毫米)後孔徑上的掃描角度高達±7.16°,可產生高達1.6×1.6mm2的方形現場(FOV)。為了實現大的掃描角度,本發明提供並優化了一種專用管透鏡,該鏡透管結合了三個平凸透鏡(Edmund Optics:86-925),每個透鏡的通光孔徑和EFL分別為73.5mm和500mm,從而產生了組合的EFL 166.7毫米,結合普通掃描鏡頭(Thorlabs-LSM05-BB,EFL=110毫米)可產生1.515倍的光束放大倍率;因此,要求在掃描透鏡上的最大掃描角度約為±10.8°,以實現1.6×1.6mm2的方形FOV。 According to the present invention, the wide-angle optical scanning system (shown in Figure 1(a), 1(b)) is optimized using ZEMAX, which is effective in high NA and low magnification objectives (Olympus-XLUMPlanFl, 20X, 0.95W) The focal length (EFL)=9mm), the scanning angle on the aperture is as high as ±7.16°, which can produce a square field (FOV) up to 1.6×1.6mm 2 . In order to achieve a large scanning angle, the present invention provides and optimizes a special tube lens, which combines three plano-convex lenses (Edmund Optics: 86-925), and the clear aperture and EFL of each lens are 73.5mm. And 500mm, resulting in a combined EFL of 166.7mm, combined with ordinary scanning lens (Thorlabs-LSM05-BB, EFL=110mm) can produce 1.515 times the beam magnification; therefore, the maximum scanning angle required on the scanning lens is about ±10.8° to achieve a square FOV of 1.6×1.6mm 2 .

使用直徑為9.25mm的、波長為λ=1070nm的輸入光束並將高NA和低倍率物鏡視為近軸透鏡,發現均方根(RMS)波前誤差(無散焦)和Strehl比於沿X和Y方向的0°和±7.7°偏軸配置(在掃描透鏡上方)之下分別 為<0.07λ和>80%,確認了在FOV邊緣中心處的衍射極限性能為1.6×1.6平方毫米,表示>78%的FOV(亦即1.6×1.6平方毫米=2.56平方毫米方形FOV中的π×0.82平方毫米=2.01平方毫米圓形FOV)受衍射限制(Maréchal Criterion)。圖2(a),2(b)和2(c)在X軸上偏軸±7.7°的情況下,光學傳遞函數(OTF)的模量與空間頻率(週期/mm)的關係圖X軸和Y軸分別為0°軸和Y方向為±7.7°軸。此外,在X和Y方向上,掃描透鏡上0°和±7.7°偏軸的所有配置同時在固定像面上的RMS波前誤差(無散焦)在0.1λ以下,這表明低場曲率系統。為了有效收集熒光信號,使用了具有3.75的縮小倍率的中繼系統(圖1(b)),從而在整個掃描範圍內形成了約4mm的聚焦光斑直徑,該直徑足夠小,可以位於PMT光敏區域內。 Using an input beam with a diameter of 9.25mm and a wavelength of λ=1070nm and treating a high NA and low magnification objective as a paraxial lens, it is found that the root mean square (RMS) wavefront error (no defocus) and Strehl are compared to the X The 0° and ±7.7° off-axis configurations (above the scanning lens) in the Y direction are <0.07λ and >80%, respectively, confirming that the diffraction limit performance at the center of the FOV edge is 1.6×1.6 mm², which means >78% of FOV (that is, π×0.8 in a square FOV of 1.6×1.6 square millimeters = 2.56 square millimeters, 2 square millimeters = 2.01 square millimeters circular FOV) is limited by diffraction (Maréchal Criterion). Figure 2(a), 2(b) and 2(c) in the case of off-axis ±7.7° on the X axis, the relationship between the modulus of the optical transfer function (OTF) and the spatial frequency (period/mm) X axis The and Y axis are 0° axis and the Y direction is ±7.7° axis, respectively. In addition, in the X and Y directions, all configurations of 0° and ±7.7° off-axis on the scanning lens simultaneously have an RMS wavefront error (no defocus) below 0.1λ on the fixed image plane, which indicates a low-field curvature system . In order to effectively collect fluorescent signals, a relay system with a reduction magnification of 3.75 is used (Figure 1(b)), thereby forming a focused spot diameter of about 4mm in the entire scanning range, which is small enough to be located in the PMT photosensitive area Inside.

獲取奈奎斯特準則的要求的最小像素數目對於獲取最佳光學分辨率至關重要。1.6×1.6mm2的FOV需要7459×7459的像素數才能解析429nm(λ=1070nm,NA=0.95)的理論雙光子橫向分辨率,像素大小為214.5nm。本發明引入了一種超越奈奎斯特(Nyquist)的資料採集系統,該系統能夠以高達每秒125M個採樣(MSps)的採樣速率同時採樣4個通道,從而使4個通道的單幀像素數達到15720×16000,導致1每幀千兆像素,同時保持0.5fps(每秒幀)。在本發明中,通過以70MHz的重複頻率從飛秒雷射源(相干保真度2光纖雷射器)對來自每個光脈衝的1個三維像素(voxel)進行同步採樣,實現了每秒70M個樣本的採集速度,其能掃描1.6×1.6×1.6mm3的體積,具有8800×8800×2000(×4通道),亦即619.52Giga-voxels,可在<39分鐘內以0.8μmZ步驟下捕獲1.13TB的16位元原始數據,具有14位元分辨率,並保持超越Nyquist三維像素大小,超越Nyquist體掃描速度和Nyquist超出線掃描速 度<27atliter,>1750μm3/ms和>12mm/ms,同時保持有效像素停留時間小於40ns,有效分辨率小於500nm。在本發明中,通過以95MHz的重複頻率從飛秒雷射源(鉻鎂橄欖石雷射)以每光脈衝1個三維像素的同步採樣,進一步實現了每秒95M個採樣的採集速度,掃描1.6×1.6×1.6mm3的體積,具有12000×12000×2000(×4通道),亦即1.152Tera-voxels,可在<53分鐘內以0.8μmZ-步驟下捕獲約2.1TB的16位元原始數據,具有14位分辨率,並保持Nyquist超過三維像素大小,Nyquist超出體積掃描速度和Nyquist超出線掃描速度<15atliter,>1288um3/ms和>12mm/ms,同時保持有效小於35ns的像素停留時間,有效橫向分辨率小於420nm。 Obtaining the minimum number of pixels required by the Nyquist criterion is essential for obtaining the best optical resolution. The FOV of 1.6×1.6mm 2 requires 7459×7459 pixels to resolve the theoretical two-photon lateral resolution of 429nm (λ=1070nm, NA=0.95), and the pixel size is 214.5nm. The present invention introduces a data acquisition system beyond Nyquist, which can sample 4 channels simultaneously at a sampling rate of up to 125M samples per second (MSps), so that the number of pixels in a single frame of 4 channels Reached 15720×16000, resulting in 1 gigapixel per frame, while maintaining 0.5fps (frames per second). In the present invention, by synchronously sampling 1 voxel from each light pulse from a femtosecond laser source (coherent fidelity 2 fiber laser) at a repetition rate of 70MHz, the realization of The acquisition speed of 70M samples, which can scan a volume of 1.6×1.6×1.6mm 3 , has 8800×8800×2000 (×4 channels), that is, 619.52Giga-voxels, which can be performed in 0.8μmZ steps in <39 minutes Capture 1.13TB of 16-bit raw data with 14-bit resolution, and maintain the size of 3D pixels beyond Nyquist, Nyquist volume scan speed and Nyquist line scan speed <27atliter, >1750μm 3 /ms and >12mm/ms, At the same time, the effective pixel dwell time is less than 40ns, and the effective resolution is less than 500nm. In the present invention, by synchronously sampling from a femtosecond laser source (chrome forsterite laser) with 1 voxel per light pulse at a repetition rate of 95MHz, the acquisition speed of 95M samples per second is further realized. 1.6×1.6×1.6mm 3 with a volume of 12000×12000×2000 (×4 channels), which is 1.152 Tera-voxels, which can capture about 2.1TB of 16-bit original in <53 minutes with 0.8μmZ-steps Data, with 14-bit resolution, and keeping Nyquist exceeding the 3D pixel size, Nyquist exceeding volume scanning speed and Nyquist exceeding line scanning speed <15atliter, >1288um 3 /ms and >12mm/ms, while maintaining an effective pixel dwell time less than 35ns , The effective lateral resolution is less than 420nm.

本發明進一步利用多編程控制演算法來使慢速Y軸與快速X軸同步,而在每幀完成之後不發送外部電氣幀觸發信號,從而以單幀像素數實現983fps的幀速率,其具15720×8(×4通道)的像素,亦即每秒125M個採樣速率的125,760(×4通道)三維像素,包括以14位元分辨率實時存儲16位元格式的採集數據,達到共振掃描器被限制的幀速率,從而確認了慢速Y軸同步的穩固性。表1和表2分別描述了本發明的資料採集系統的採集能力及其與現有具有系統的性能比較,結論是本發明的系統提供了大於4倍的FOV且具有6倍的較高幀率,且與目前的系統(Leica SP8 Confocal)相比,同時保持>4.5倍的較高像素數目。 The present invention further uses a multi-programming control algorithm to synchronize the slow Y axis with the fast X axis, and does not send an external electrical frame trigger signal after each frame is completed, so as to achieve a frame rate of 983fps with a single frame of pixels, which has 15720 ×8 (×4 channels) pixels, that is, 125,760 (×4 channels) three-dimensional pixels with a sampling rate of 125M per second, including the real-time storage of 16-bit format acquisition data with 14-bit resolution, which can achieve the resonance scanner The limited frame rate confirms the stability of slow Y-axis synchronization. Table 1 and Table 2 respectively describe the collection capabilities of the data collection system of the present invention and its performance comparison with existing systems. The conclusion is that the system of the present invention provides FOV greater than 4 times and has a higher frame rate of 6 times. And compared with the current system (Leica SP8 Confocal), while maintaining a higher number of pixels> 4.5 times.

本發明系統的分辨率分析上利用了直徑為220nm的Fluoresbrite®Multifluorescent微球(Polysciences,Inc.)。通過將奈米小球浸入0.7%瓊脂糖溶液中來固定奈米小球,並掃描FOV為1.6×1.6mm2,單幀像素數為8800×8800,保持像素和三維像素大小分別為181.82nm和9.92attoliter(其Z 階步長為300nm)。圖3(a)和(b)分別描繪了平均25個奈米小球的橫向和軸向橫截面,誤差線表示標準偏差。應用高斯擬合(gaussian fitting),發現有效的兩光子橫向和軸向分辨率(即全寬半峰(FWHM))分別為0.483μm和1.997μm,從而導致有效的3D分辨率小於0.5飛升。橫向分辨率的平均值其標準偏差和標準誤差分別為0.0342μm和0.0068μm,而軸向分辨率的平均值者則分別為0.3027μm和0.0605μm。 The resolution analysis of the system of the present invention uses Fluoresbrite® Multifluorescent microspheres (Polysciences, Inc.) with a diameter of 220 nm. The nanospheres were fixed by immersing the nanospheres in a 0.7% agarose solution, and the scanning FOV was 1.6×1.6mm 2 , the number of pixels in a single frame was 8800×8800, and the pixel and voxel sizes were kept at 181.82nm and respectively. 9.92attoliter (the Z-step step length is 300nm). Figure 3 (a) and (b) depict the transverse and axial cross-sections of an average of 25 nanospheres, respectively, and the error bars represent the standard deviation. Applying Gaussian fitting, it is found that the effective two-photon lateral and axial resolution (ie, full width half maximum (FWHM)) are 0.483μm and 1.997μm, respectively, resulting in an effective 3D resolution of less than 0.5 soaring. The standard deviation and standard error of the average value of the lateral resolution are 0.0342μm and 0.0068μm, while the average value of the axial resolution is 0.3027μm and 0.0605μm.

參考本發明。圖1(a)和1(b)顯示了大角度光域掃描系統及其熒光檢測光學器件,其中,101:輸入雷射束,102、103:分別為共振和檢流計掃描鏡,104、107:分別為掃描透鏡和專用管透鏡,109:高NA(數值孔徑)和低倍物鏡,110:焦距平面,111:二向色分束器,112,115:聚焦透鏡,116:PMT感光區域,105,106,108,113,114:轉向鏡。圖2(a)、2(b)和2(c)分別顯示了在X軸上偏軸±7.7°在X軸和Y軸上分別為0°離軸和在Y軸方向上為±7.7°離軸的光傳遞函數(OTF)的模數相對於空間頻率(週期/mm)的關係。圖3(a)和3(b)分別顯示了橫向和軸向橫截面,平均25個奈米小球(beads,直徑為220nm),誤差線表示標準偏差。高斯擬合分別產生0.483μm和1.997μm的有效雙光子橫向和軸向分辨率(亦即全寬半峰(FWHM)),即有效的3D分辨率<0.5飛升,且標準偏差和橫向分辨率的平均值分別為0.0342μm和0.0068μm,而軸向分辨率的平均值者則分別為0.3027μm和0.0605μm。圖4(a)和4(b)分別以傾斜視圖和俯視圖描繪了3D渲染(rendered)的體積,其體積大小為1.6×1.6×0.5mm3,是在發明的大角度光域掃描系統下以8800×8800×1711voxels(三維像素),即總數為132.5Giga-voxels,保持Z步長(Z-step)為300nm,其中tdTomato陽性生物體外小鼠髓質被用作雙 光子成像的體積組織樣品,並被飛秒激發中心頻率為1070nm的雷射光源(Coherent Fidelity-2光纖雷射器)具有70MHz的重複頻率,使用Amira 5.3.2(Visage Imaging Inc.,聖地亞哥,加利福尼亞)軟體進行3D渲染,無需使用縫合和/或鑲嵌。圖4(c)描繪了從圖4(b)中所示的原始體積裁剪的3D縮放區域,即,該區域由圖4(b)中的白色虛線框標記。圖4(d)描繪了通過在170μm至173μm的深度範圍內的10個幀的重疊而形成的圖像,該圖像是從如圖4(a)和4(b)所示中描述的相同體積中摘取的,二維(2D)FOV為1.6×1.6mm2,奈奎斯特超像素大小約為181.82nm。圖4(e)顯示了從圖4(d)所示的原始圖像裁剪出的縮放區域,即該區域由圖4(d)中的白色虛線框標記,用超越奈奎斯特的像素大小為181.82nm。 Refer to the present invention. Figures 1(a) and 1(b) show the large-angle optical domain scanning system and its fluorescence detection optics, where 101: input laser beam, 102, 103: resonance and galvanometer scanning mirrors, 104, 107: Scanning lens and dedicated tube lens respectively, 109: High NA (numerical aperture) and low power objective lens, 110: Focal length plane, 111: Dichroic beam splitter, 112, 115: Focus lens, 116: PMT photosensitive area , 105, 106, 108, 113, 114: turning mirror. Figures 2(a), 2(b), and 2(c) respectively show the off-axis ±7.7° on the X-axis, 0° off-axis on the X-axis and Y-axis, and ±7.7° on the Y-axis. The relationship between the modulus of the off-axis optical transfer function (OTF) and the spatial frequency (period/mm). Figures 3(a) and 3(b) show the transverse and axial cross-sections, respectively, with an average of 25 nanospheres (beads, 220nm in diameter), and the error bar represents the standard deviation. Gaussian fitting produces effective two-photon lateral and axial resolutions of 0.483μm and 1.997μm (that is, full-width half-maximum (FWHM)), that is, the effective 3D resolution is less than 0.5 soaring, and the standard deviation and lateral resolution are The average values are 0.0342μm and 0.0068μm, while the average values of the axial resolution are 0.3027μm and 0.0605μm. Figures 4(a) and 4(b) depict the 3D rendered volume in an oblique view and a top view, respectively. The volume is 1.6×1.6×0.5mm 3 , which is based on the invented wide-angle optical domain scanning system 8800×8800×1711 voxels (three-dimensional pixels), that is, the total number is 132.5Giga-voxels, keeping the Z-step (Z-step) at 300nm, in which the tdTomato positive organism in vitro mouse medulla is used as a volume tissue sample for two-photon imaging, The laser light source (Coherent Fidelity-2 fiber laser) with a femtosecond excitation center frequency of 1070nm has a repetition frequency of 70MHz, and 3D rendering is performed using Amira 5.3.2 (Visage Imaging Inc., San Diego, California) software. Use stitching and/or inlay. Fig. 4(c) depicts the 3D zoom area cropped from the original volume shown in Fig. 4(b), that is, the area is marked by the white dashed frame in Fig. 4(b). Figure 4(d) depicts an image formed by the overlap of 10 frames in the depth range of 170μm to 173μm, which is the same as described in Figures 4(a) and 4(b) Extracted from the volume, the two-dimensional (2D) FOV is 1.6×1.6mm 2 , and the size of the Nyquist super pixel is about 181.82 nm. Figure 4(e) shows the zoomed area cropped from the original image shown in Figure 4(d), that is, the area is marked by the white dashed frame in Figure 4(d) with a pixel size beyond Nyquist It is 181.82nm.

大角度光域掃描的光機械設置:FOV的最大化要求掃描透鏡和管透鏡對的放大倍率低。同時,物鏡的激發NA的最大化要求入射光束滿足其後孔徑,從而需要最大可能的光束直徑以擊中掃描透鏡以達到最佳條件。因此,選擇來自Cambridge Technology的4kHz共振掃描儀(圖1(a)-102)進行快速X軸掃描,具有12mm×9.25mm的大淨孔徑。對於慢速Y軸,選擇了Cambridge Technology的檢流計掃描儀(圖1(a)-103),其孔徑為14mm。以70MHz的重複頻率在1070nm處工作的脈衝雷射源(Coherent Fidelity-2光纖雷射器)或/和以95MHz的重複頻率在1260nm處工作的脈衝雷射源(鉻鎂橄欖石雷射器)為用作非線性刺激體積組織樣本的光源(圖1(a)-101)。使用放大倍率為1:5的擴束器來使光束充分擴展,從而使共振掃描鏡過滿。使用ThorLabs-LSM05-BB作為具有110mm EFL的掃描透鏡(圖1(a)-104)和專用管透鏡或定製設計的管透鏡,即三個平凸透 鏡的組合(圖1b-104)。1((a)-107)(Edmund Optics:86-925,EFL=500mm),組合EFL為166.7mm,光束放大倍數為1.515,導致光束尺寸>14mm(最大18mm)高NA和低倍物鏡的後孔徑(mm)(圖1(a)-109)(Olympus XLUMPlanFl,20X,0.95W,EFL=9mm,瞳孔直徑17mm)。 Opto-mechanical settings for wide-angle optical scanning: Maximization of FOV requires low magnification of the scanning lens and tube lens pair. At the same time, the maximization of the excitation NA of the objective requires the incident beam to meet its rear aperture, which requires the largest possible beam diameter to hit the scanning lens to achieve the best conditions. Therefore, a 4kHz resonance scanner from Cambridge Technology (Figure 1(a)-102) was selected for fast X-axis scanning, with a large clear aperture of 12mm×9.25mm. For the slow Y axis, Cambridge Technology's galvanometer scanner (Figure 1(a)-103) was selected, with an aperture of 14mm. A pulsed laser source (Coherent Fidelity-2 fiber laser) operating at 1070nm with a repetition rate of 70MHz or/and a pulsed laser source (Chrome forsterite laser) operating at 1260nm with a repetition rate of 95MHz It is used as a light source for nonlinear stimulation of volume tissue samples (Figure 1(a)-101). Use a beam expander with a magnification ratio of 1:5 to fully expand the beam so that the resonant scanning mirror is overfilled. Use ThorLabs-LSM05-BB as a scanning lens with 110mm EFL (Figure 1(a)-104) and a special tube lens or a custom-designed tube lens, that is, three flat convex lenses A combination of mirrors (Figure 1b-104). 1((a)-107)(Edmund Optics: 86-925, EFL=500mm), the combined EFL is 166.7mm, and the beam magnification is 1.515, resulting in a beam size> 14mm (maximum 18mm) behind the high NA and low magnification objectives Aperture (mm) (Figure 1(a)-109) (Olympus XLUMPlanFl, 20X, 0.95W, EFL=9mm, pupil diameter 17mm).

信號採集光電系統:圖1(b)示出了信號收集光學設計的斜視圖,該設計是大角度光域掃描系統的一部分。高倍數和低倍率物鏡(圖1(b)-109)收集從焦距平面(圖1(b)-110)處的體積組織樣本發出的熒光信號,並通過二向色分束器(FF801-Di02,Semrock)(圖1(b)-111)朝向檢測單元反射。該檢測單元包括一個中繼系統,該系統具有兩個具有150mm EFL(Edmund Optics:32-982,雙凸)(圖1(b)-112)和40mm(Edmund Optics:48-654,plano-凸形)(圖1(b)-115),分別具有49mm和39mm的通孔;將高NA和低倍率物鏡收集的出射熒光束縮小3.75倍,從而在整個掃描範圍內提供約4mm的聚焦光點直徑,該直徑足夠小,可以位於PMT的感光區域內(圖1(b)-116)(R10699,濱松,感光面積=24×8mm2)。為了確保檢測到tdTomato兩光子熒光信號,在PMT光陰極之前放置了一個帶通濾波器(FF01-580/60-25-D,Semrock)。對於電流到電壓的轉換,來自PMT的信號會通過跨阻放大器C6438-01,濱松),其輸出使用具有14位元分辨率的AlazarTech ATS9440數字轉換器進行數字化。 Signal collection photoelectric system: Figure 1(b) shows an oblique view of the signal collection optical design, which is part of the large-angle optical domain scanning system. High magnification and low magnification objectives (Figure 1(b)-109) collect the fluorescence signal emitted from the volumetric tissue sample at the focal plane (Figure 1(b)-110), and pass the dichroic beam splitter (FF801-Di02) , Semrock) (Figure 1(b)-111) reflects towards the detection unit. The detection unit includes a relay system with two EFLs with 150mm (Edmund Optics: 32-982, double convex) (Figure 1(b)-112) and 40mm (Edmund Optics: 48-654, plano-convex) (Figure 1(b)-115), with 49mm and 39mm through holes, respectively; the outgoing fluorescent beam collected by the high NA and low magnification objective lens is reduced by 3.75 times, thereby providing a focused light spot of about 4mm in the entire scanning range The diameter is small enough to be located in the photosensitive area of the PMT (Figure 1(b)-116) (R10699, Hamamatsu, photosensitive area=24×8mm2 ) . To ensure that the two-photon fluorescence signal of tdTomato is detected, a band-pass filter (FF01-580/60-25-D, Semrock) is placed before the PMT photocathode. For the current to voltage conversion, the signal from the PMT passes through the transimpedance amplifier (C6438-01, Hamamatsu), and its output is digitized using an AlazarTech ATS9440 digitizer with 14-bit resolution.

使用ZEMAX進行性能分析:如圖1(a)所示,共振掃描和振鏡掃描鏡(分別標記為圖1(a)-102和圖1(a)-103)相隔12mm的距離,從而由於兩個反射鏡不能與掃描透鏡等距, 因此在X和Y方向上的性能不同(圖1(a)-104)。為了優化設計,使用ZEMAX對光域掃描系統進行完整的3D仿真,同時針對X和Y方向(即,離軸0°和±7.7°)上同時配置諧振和檢流計掃描鏡的不同掃描角度相對於光軸在X和Y方向上的配置(在掃描透鏡上)。考慮到高NA和低倍物鏡(圖1(a)-109,Olympus-XLUMPlanFl,20X,0.95W)作為具有9mm EFL的近軸透鏡,該系統在1070nm處進行了優化。光學系統的性能進一步取決於輸入雷射束的大小,事實是,對於填充物鏡後孔徑以最大化激發NA所需的更大輸入光束直徑,由掃描透鏡(圖1(a)-107)與專用管透鏡(圖1(a)-104)造成的光學像差加總得尤為重要,特別是對於較大的掃描角度而言,整體性能會下降。因此,為了評估掃描系統的真實性能,在執行模擬時,使用9.25mm的輸入光束直徑(即4kHz諧振掃描鏡的最小尺寸)。 Use ZEMAX for performance analysis: As shown in Figure 1(a), the resonance scanning and galvanometer scanning mirrors (labeled as Figure 1(a)-102 and Figure 1(a)-103, respectively) are separated by a distance of 12mm, so that the two The mirror cannot be equidistant from the scanning lens, Therefore, the performance in the X and Y directions is different (Figure 1(a)-104). In order to optimize the design, use ZEMAX to perform a complete 3D simulation of the optical domain scanning system, and simultaneously configure the resonance and galvanometer scanning mirrors in the X and Y directions (ie, off-axis 0° and ±7.7°). The configuration of the optical axis in the X and Y directions (on the scanning lens). Considering the high NA and low magnification objectives (Figure 1(a)-109, Olympus-XLUMPlanFl, 20X, 0.95W) as a paraxial lens with 9mm EFL, the system is optimized at 1070nm. The performance of the optical system further depends on the size of the input laser beam. The fact is that for filling the rear aperture of the objective lens to maximize the larger input beam diameter required to excite NA, the scanning lens (Figure 1(a)-107) and the dedicated The total optical aberration caused by the tube lens (Figure 1(a)-104) is particularly important, especially for larger scanning angles, the overall performance will decrease. Therefore, in order to evaluate the real performance of the scanning system, the input beam diameter of 9.25mm (that is, the minimum size of the 4kHz resonant scanning mirror) was used when performing the simulation.

具有全場超越奈奎斯特分辨率的資料採集系統:在圖1(c)中示出了具有控制電子設備的資料採集系統200。在資料採集系統200中,跨阻放大器(圖1(c)-117)用於對來自PMT(圖1(c)-116)的輸出信號進行電流到電壓轉換。放大器的輸出使用AlazarTech的數字化儀ATS9440進行數字化(圖1(c)-118a)。National Instrument的控制卡PCIe-6341(圖1(c)-118b)用於慢速Y軸與快速X軸的同步。共振掃描鏡控制器(圖1(c)-119)和振鏡掃描鏡控制器(圖1(c)-121)(電子驅動板)用於分別控制共振掃描鏡(圖1(c))-102)和檢流計掃描鏡(圖1(c)-103)。圖1(c)-118a和圖1(c)-118b的兩個元件都從共振掃描鏡接收來自控制器(圖1(c)-119)同步信號(4kHz數字信號,每個邊緣代表共振掃描鏡的運動方向的變化)控制器。圖1(c)-118b的元件通過其控制器單元(圖1(c)-119) 可以控制諧振掃描鏡(圖1(c)-102)的幅度。使用16位元數位類比轉換器(DAC)(圖1(c)-120)將圖1(c)-118b所產生成的16位元數位數據字(由控制和採集軟體(圖1(c)-122)予以計算及下指令)且轉換成電壓,並將該特定電壓提供給振鏡掃描鏡控制器(圖1(c)-121),從而生成慢Y軸鏡的特定方向/角度(圖1(c)-103)。元件圖1(c)-122是定製開發的基於C++的GPU加速控制和採取軟體,該軟體可控制以下元件:圖1(c)-118a,118b,119、120、121、102和103。 Data acquisition system with full-field resolution beyond Nyquist: Fig. 1(c) shows a data acquisition system 200 with control electronics. In the data acquisition system 200, the transimpedance amplifier (Figure 1(c)-117) is used to convert the output signal from the PMT (Figure 1(c)-116) from current to voltage. The output of the amplifier is digitized using AlazarTech's digitizer ATS9440 (Figure 1(c)-118a). National Instrument's control card PCIe-6341 (Figure 1(c)-118b) is used to synchronize the slow Y axis with the fast X axis. The resonant scanning mirror controller (Figure 1(c)-119) and the galvo scanning mirror controller (Figure 1(c)-121) (electronic drive board) are used to control the resonant scanning mirror (Figure 1(c))- 102) and galvanometer scanning mirror (Figure 1(c)-103). The two elements of Figure 1(c)-118a and Figure 1(c)-118b both receive the synchronization signal (4kHz digital signal) from the controller (Figure 1(c)-119) from the resonant scanning mirror, and each edge represents the resonance scanning The change of the direction of movement of the mirror) controller. The components of Figure 1(c)-118b pass through its controller unit (Figure 1(c)-119) The amplitude of the resonant scanning mirror (Figure 1(c)-102) can be controlled. Use a 16-bit digital-to-analog converter (DAC) (Figure 1(c)-120) to convert the 16-bit digital data word generated in Figure 1(c)-118b (by the control and acquisition software (Figure 1(c)) -122) to calculate and issue instructions) and convert it into a voltage, and provide the specific voltage to the galvanometer scanning mirror controller (Figure 1(c)-121) to generate the specific direction/angle of the slow Y-axis mirror (Figure 1(c)-103). Components Figure 1(c)-122 is a custom-developed C++-based GPU acceleration control and adoption software that can control the following components: Figure 1(c)-118a, 118b, 119, 120, 121, 102, and 103.

開發的控制和採集軟體(圖1(c)-122)是一個用C++和C#(使用Visual Studio 2017),並結合了AlazarApi和NIDAQmx支持的C/C++來編寫的多編程應用程式,可提供分別對ATS9440(來自AlazarTech)(圖1(c)-118a)和PCIe-6341(來自National Instruments)(圖1(c)-118b)的控制。數位化器ATS9440(圖1(c)-118a)能夠以14位元分辨率,每秒高達125M個採樣的採樣速率同時採樣4個通道,進一步提供雙埠記憶體支持,從而能夠將資料在數據獲取期間同時傳輸到主機記憶體。為了高速處理採集的數據,定製開發的控制和採集軟體使用了NVIDIA CUDA(計算機統一設備架構)(版本:10.1),加速的OpenCV(圖像處理庫)(版本:4.1.1)。使用裝有Intel®CoreTMi7-9800X處理器和Nvidia Quadro RTX 8000圖形卡的電腦來運行控制和採集軟體。 The control and acquisition software developed (Figure 1(c)-122) is a multi-programming application written in C++ and C# (using Visual Studio 2017), combined with C/C++ supported by AlazarApi and NIDAQmx, and can provide separate Control of ATS9440 (from AlazarTech) (Figure 1(c)-118a) and PCIe-6341 (from National Instruments) (Figure 1(c)-118b). The digitizer ATS9440 (Figure 1(c)-118a) can sample 4 channels simultaneously with a 14-bit resolution and a sampling rate of up to 125M samples per second, and further provides dual-port memory support, so that data can be stored in the data Transfer to the host memory at the same time during acquisition. In order to process the collected data at high speed, the custom-developed control and acquisition software uses NVIDIA CUDA (Computer Unified Device Architecture) (version: 10.1) and accelerated OpenCV (image processing library) (version: 4.1.1). Use a computer equipped with Intel® Core TM i7-9800X processor and Nvidia Quadro RTX 8000 graphics card to run the control and capture software.

定製開發的控制和採集軟體還涉及一種多編程控制演算,用於使慢速Y軸與快速X軸同步,而無需在每個幀完成後發送外部電子幀觸發信號。一個16位元DAC模塊(Cambridge Technology的6757型)(圖1(c)-120)與MicroMaxTM671系列(Cambridge Technology的檢流計掃描鏡的驅動器模塊) 連接成界面(圖1(c)-121)),以實現慢速Y軸的精確運動。為了將16位元資料字發送到6757 DAC模塊(圖1(c)-120),需要一個控制卡PCIe-6341(National Instruments,圖1(c)-118b)(帶有24個數字I/O)梢)直接連接到電腦主機板,從而可以通過控制和採集軟體直接控制慢Y軸運動。後台編程連續監視來自諧振掃描器的線觸發信號(同步信號),並使用16位分辨率產生16位元資料字,即到DAC模塊的角度定位步驟。使用15720×8(×4通道)的單幀像素數(即125,760(×4通道)voxels)、以每秒125M個採樣的採樣速率下實現約983fps的幀速率,包括實時存儲以14位元分辨率獲取16位元格式的數據,達到了共振掃描器頻率所限制的最大幀速率,確認了慢速Y軸同步的穩固性。 The custom-developed control and acquisition software also involves a multi-programming control algorithm for synchronizing the slow Y axis with the fast X axis without sending an external electronic frame trigger signal after each frame is completed. A 16-bit DAC module (Cambridge Technology's 6757 type) (Figure 1(c)-120) is connected to the MicroMax TM 671 series (Cambridge Technology's galvanometer scanning mirror driver module) to form an interface (Figure 1(c)- 121)) to achieve precise movement of the slow Y axis. In order to send 16-bit data words to the 6757 DAC module (Figure 1(c)-120), a control card PCIe-6341 (National Instruments, Figure 1(c)-118b) (with 24 digital I/Os) is required ) Tip) is directly connected to the computer motherboard, so that the slow Y-axis motion can be directly controlled through the control and acquisition software. Background programming continuously monitors the line trigger signal (synchronization signal) from the resonant scanner, and uses 16-bit resolution to generate 16-bit data words, which is the angle positioning step to the DAC module. Using 15720×8 (×4 channels) single frame pixels (ie 125,760 (×4 channels) voxels), at a sampling rate of 125M samples per second to achieve a frame rate of about 983fps, including real-time storage and 14-bit resolution Rate acquisition of 16-bit format data, reaching the maximum frame rate limited by the resonant scanner frequency, confirming the stability of slow Y-axis synchronization.

參照圖1至圖4。參考圖1(a),1(b)和1(c),本發明較佳實施例的精義總結如下。本發明提供了用於高速深組織成像的大角度光域掃描系統100,其具有至少一平方毫米的視場(FOV),其具有超越奈奎斯特(Nyquist-exceeded)同步採樣解析的亞飛升有效3D分辨率,包括:一或多個脈衝雷射源,即第1至第n個脈衝雷射源101,用於發射第n個脈衝雷射源的一或多個中心波長為λn且超越奈奎斯特重複率為Rn

Figure 108144297-A0305-02-0017-7
An×Nn,其中An是奈奎斯特(Nyquist)限制的採樣率,係以4倍的水平FOV乘以共振掃描儀頻率除以理論上受目鏡限制的橫向分辨率,用以在大於1mm的水平FOV上解析微光學分辨率,並且Nn是
Figure 108144297-A0305-02-0017-8
1的整數來表示每個voxel(三維像素)的雷射脈衝數;一諧振掃描鏡102,光學耦合到該一或多個脈衝雷射源;一檢流計掃描鏡103(galvometer scanning mirror),光學耦合到該諧振掃描鏡; 一光學耦合到該檢流計掃描鏡103的掃描透鏡104;一專用管透鏡107,包括三個平凸透鏡,每個平凸透鏡的有效焦距為500mm,該等平凸透鏡組合在一起並光學耦合至該掃描透鏡104;一光學耦合到該專用管透鏡107的高數值孔徑(NA)和低倍率物鏡109,用以光域掃描放置在一焦距平面110上的體積組織樣本,並用以收集樣本產生的熒光信號,該螢光信號被導向一光電倍增管(PMT)116產生一電信號;以及一資料採集系統200,耦合以從PMT 116接收電信號,其中每個採樣事件分別與一個脈衝雷射源或最高重複率脈衝雷射源(如果是一個或多個脈衝雷射源)的每個光脈衝同步,該資料採集系統包含一跨阻抗放大器117,一AlazarTech數位器118a,一National Instrument卡118b,一諧振掃描鏡控制器119、一16位元數位至類比轉換器(DAC)120,一檢流器掃描鏡控制器121以及控制和採取軟體122,其中,該掃描透鏡和該專用管透鏡構成了一低倍率的擴束器,從而最大化了視場(FOV),但同時在高NA和低倍率物鏡的後孔徑上提供了擴大的光束大小,以保持高激發NA,因而具有高分辨率。 Refer to Figures 1 to 4. 1(a), 1(b) and 1(c), the essence of the preferred embodiment of the present invention is summarized as follows. The present invention provides a large-angle optical domain scanning system 100 for high-speed deep tissue imaging, which has a field of view (FOV) of at least one square millimeter, and has a sub-feeling higher than Nyquist-exceeded synchronous sampling analysis Effective 3D resolution, including: one or more pulsed laser sources, that is, the first to nth pulsed laser sources 101, one or more center wavelengths used to emit the nth pulsed laser source are λn and exceed Nyquist repetition rate Rn
Figure 108144297-A0305-02-0017-7
An×Nn, where An is the sampling rate limited by Nyquist, which is 4 times the horizontal FOV multiplied by the resonant scanner frequency divided by the theoretically limited lateral resolution by the eyepiece, which is used in Resolve micro-optical resolution on horizontal FOV, and Nn is
Figure 108144297-A0305-02-0017-8
An integer of 1 represents the number of laser pulses per voxel (three-dimensional pixel); a resonant scanning mirror 102 is optically coupled to the one or more pulsed laser sources; a galvometer scanning mirror 103 (galvometer scanning mirror), Optically coupled to the resonant scanning mirror; a scanning lens 104 optically coupled to the galvanometer scanning mirror 103; a special tube lens 107, including three plano-convex lenses, each plano-convex lens has an effective focal length of 500mm, the plano-convex lenses Assembled together and optically coupled to the scanning lens 104; a high numerical aperture (NA) and low magnification objective lens 109 optically coupled to the dedicated tube lens 107 for optical scanning of a volumetric tissue sample placed on a focal plane 110 , And used to collect the fluorescent signal generated by the sample, the fluorescent signal is directed to a photomultiplier tube (PMT) 116 to generate an electrical signal; and a data acquisition system 200 coupled to receive the electrical signal from the PMT 116, wherein each sampling event Synchronize with each light pulse of a pulsed laser source or a pulsed laser source with the highest repetition rate (if one or more pulsed laser sources). The data acquisition system includes a transimpedance amplifier 117 and an AlazarTech digitizer 118a , A National Instrument card 118b, a resonant scanning mirror controller 119, a 16-bit digital-to-analog converter (DAC) 120, a galvanometer scanning mirror controller 121 and control and acquisition software 122, where the scanning lens This special tube lens constitutes a low-magnification beam expander, thereby maximizing the field of view (FOV), but at the same time provides an enlarged beam size on the rear aperture of the high NA and low-magnification objective lens to maintain high excitation NA , Which has high resolution.

根據本發明的大角度光域掃描系統100,該資料採集系統200能夠以相等於第n個脈衝雷射,(亦即為一個脈衝雷射源)的重複率Rn

Figure 108144297-A0305-02-0018-9
An×Nn進行同步採樣,或者在一個或多個脈衝雷射源的情況下,以相等於最高重複率脈衝雷射源的採樣率進行同步採樣。在一個或多個脈衝雷射源的情況下,而其每個採樣事件與每個光脈衝同步,從而獲得超越使Nyquist(超越Nyquist準則)的像素數目,俾在不縮小FOV大小的情況下,解決了水平FOV大於1mm的微光學分辨率。 According to the large-angle optical domain scanning system 100 of the present invention, the data acquisition system 200 can achieve a repetition rate Rn equal to the nth pulsed laser (that is, a pulsed laser source)
Figure 108144297-A0305-02-0018-9
An×Nn performs synchronous sampling, or in the case of one or more pulsed laser sources, performs synchronous sampling at a sampling rate equal to the highest repetition rate pulsed laser source. In the case of one or more pulsed laser sources, and each sampling event is synchronized with each light pulse, so as to obtain the number of pixels exceeding Nyquist (exceeding the Nyquist criterion), so that without reducing the FOV size, The micro-optical resolution with horizontal FOV greater than 1mm is solved.

在本發明的大角度光域掃描系統中,該高NA和低倍率物鏡109的數值孔徑大於0.9,而有效倍率

Figure 108144297-A0305-02-0019-10
20X。 In the large-angle optical domain scanning system of the present invention, the numerical aperture of the high NA and low magnification objective lens 109 is greater than 0.9, and the effective magnification
Figure 108144297-A0305-02-0019-10
20X.

依據本發明,該諧振掃描鏡102的頻率至少為4kHz,並且該諧振掃描鏡102提供12mm×9.25mm的淨孔徑,該孔徑被輸入的一個或多個雷射束過度填充以最大化掃描束尺寸。 According to the present invention, the frequency of the resonant scanning mirror 102 is at least 4kHz, and the resonant scanning mirror 102 provides a 12mm×9.25mm clear aperture, which is overfilled by one or more input laser beams to maximize the size of the scanning beam .

在本發明中,第一脈衝雷射源以1070nm為中心的70MHz的重複頻率工作,第二脈衝雷射源以1260nm為中心的95MHz的重複頻率工作。 In the present invention, the first pulsed laser source operates at a repetition frequency of 70 MHz centered at 1070 nm, and the second pulsed laser source operates at a repetition frequency of 95 MHz centered at 1260 nm.

根據本發明,專用管透鏡107包括組合在一起的三個平凸透鏡,每個平凸透鏡具有500mm的有效焦距,從而產生166.7mm的組合有效焦距,並提供直徑大於>60mm的大淨焦距,用於通過共振掃描鏡和檢流計掃描鏡支撐較大的掃描角度。 According to the present invention, the dedicated tube lens 107 includes three plano-convex lenses combined together, and each plano-convex lens has an effective focal length of 500mm, resulting in a combined effective focal length of 166.7mm and a large net focal length greater than >60mm in diameter. The resonant scanning mirror and galvanometer scanning mirror support a larger scanning angle.

在本發明的大角度光域掃描系統100的一個實施例中,分別具有110mm和166.7mm的有效焦距的掃描透鏡104和專用管透鏡107構成了具有1.515的放大率的低放大率中繼系統,從而在高NA和低倍率物鏡的後孔徑上提供高達±7.16°的掃描角,在整個掃描透鏡上提供高達±10.8°的掃描角,從而提供了正方形和圓形的視場(FOV)分別為高達1.6×1.6mm2和直徑2.26mm,但同時在高NA和低倍率物鏡(NA>0.9)的後孔徑上提供了大於14mm(最大18mm)的放大光束尺寸,從而提供高分辨率。 In an embodiment of the large-angle optical domain scanning system 100 of the present invention, the scanning lens 104 and the dedicated tube lens 107 respectively having an effective focal length of 110 mm and 166.7 mm constitute a low magnification relay system with a magnification of 1.515, This provides a scan angle of up to ±7.16° on the rear aperture of high NA and low magnification objectives, and a scan angle of up to ±10.8° on the entire scan lens, thus providing square and circular fields of view (FOV) respectively Up to 1.6×1.6mm 2 and a diameter of 2.26mm, but at the same time, it provides an enlarged beam size greater than 14mm (maximum 18mm) on the rear aperture of high NA and low magnification objectives (NA>0.9), thereby providing high resolution.

在本發明的大角度光域掃描系統100的另一個實施例中,一具直徑為9.25mm的λ=1070nm的輸入光束和被模擬為一近軸透鏡的高NA和低倍率的近軸透鏡,以產生對於X和Y方向的0°和±7.7°離軸配置(在掃描透鏡上),均方根(RMS)波前誤差(無散焦)和Strehl比分別為<0.07λ 和>80%,確保在FOV的邊緣中心處的衍射極限性能為1.6×1.6mm2,表明FOV的>78%,即π×0.82mm2=2.01mm2圓形FOV(在1.6×1.6mm2=2.56mm2方形FOV中)係為衍射限制(Maréchal標準)。 In another embodiment of the large-angle optical domain scanning system 100 of the present invention, an input beam with a diameter of λ=1070 nm with a diameter of 9.25 mm and a high NA and low-magnification paraxial lens simulated as a paraxial lens, To produce 0° and ±7.7° off-axis configurations (on the scan lens) for the X and Y directions, the root mean square (RMS) wavefront error (without defocus) and the Strehl ratio are <0.07λ and >80%, respectively , To ensure that the diffraction limit performance at the edge center of the FOV is 1.6×1.6mm 2 , indicating that the FOV is >78%, that is, π×0.8 2 mm 2 =2.01mm 2 Circular FOV (at 1.6×1.6mm 2 =2.56mm 2 square FOV) is diffraction limited (Maréchal standard).

在本發明的另一個實施例中,具直徑為9.25mm的λ=1070nm的輸入光束和一被模擬為近軸透鏡的高NA和低倍率物鏡在固定影像面上產生RMS波前誤差(無散焦),而掃描透鏡在X和Y方向上的偏軸0°和±7.7°的所有配置都同時在0.1λ以下,這意味著系統的場曲率較低。 In another embodiment of the present invention, an input beam with a diameter of λ=1070nm with a diameter of 9.25mm and a high NA and low magnification objective lens modeled as a paraxial lens produce RMS wavefront error (without dispersion) on the fixed image plane. Focus), and all configurations of the off-axis 0° and ±7.7° of the scanning lens in the X and Y directions are simultaneously below 0.1λ, which means that the field curvature of the system is low.

此外,通過具有3.75的縮小倍率的中繼系統可有效收集熒光信號,從而使4mm的聚焦光點直徑位於PMT的感光區域內。 In addition, a relay system with a reduction magnification of 3.75 can effectively collect fluorescent signals, so that the 4mm focal spot diameter is located in the photosensitive area of the PMT.

根據本發明,一第一轉向鏡105和一第二轉向鏡106光學耦合到掃描透鏡104,該專用管透鏡107與該第二轉向鏡106光學耦合,一第三轉向鏡108與該第二透鏡106光學耦合,以及該專用管透鏡107和該高NA低倍率物鏡109光學耦合到該第三轉向鏡以實現便攜式形狀因數。 According to the present invention, a first turning mirror 105 and a second turning mirror 106 are optically coupled to the scanning lens 104, the dedicated tube lens 107 is optically coupled to the second turning mirror 106, and a third turning mirror 108 is optically coupled to the second lens. 106 is optically coupled, and the dedicated tube lens 107 and the high NA low power objective lens 109 are optically coupled to the third turning mirror to achieve a portable form factor.

另外,在該高NA低倍率物鏡109的後孔徑和電倍增管(PMT)116之間順序地提供一二向色分束器111,一雙凸透鏡112,一第四轉向鏡113,一第五轉向鏡114和一平凸透鏡115。 In addition, a dichroic beam splitter 111, a lenticular lens 112, a fourth turning mirror 113, and a fifth are sequentially provided between the rear aperture of the high NA and low magnification objective lens 109 and the power multiplier tube (PMT) 116. Turning mirror 114 and a plano-convex lens 115.

在本發明中,為了超過具有亞微米橫向光學分辨率的完整FOV的奈奎斯特準則的要求,資料採集系統提供了以高達每秒125M個採樣速率同時採樣4個通道的能力,具有同時以4通道的14位元分辨率對16位元原始資料進行數據採集,傳輸,處理,預覽和存儲,並達到15720×16000(×4通道)的單幀像素數,並導致約1千兆像素每幀採集,同時保持0.5fps。 In the present invention, in order to exceed the requirements of the Nyquist criterion for a complete FOV with submicron lateral optical resolution, the data acquisition system provides the ability to sample 4 channels simultaneously at a sampling rate of up to 125M per second, with simultaneous The 4-channel 14-bit resolution performs data acquisition, transmission, processing, preview and storage of 16-bit original data, and achieves a single frame pixel number of 15720×16000 (×4 channels), and results in about 1 gigapixel per frame Frame acquisition while maintaining 0.5fps.

或者,通過一個以70MHz重複率脈衝的脈衝雷射源,以每 秒70M個採樣的速度下將資料採集系統的採集速度最大化,其每個光脈衝同步採樣1個voxel,並能夠掃描1.6×1.6×1.6mm3的體積,具有8800×8800×2000(×4通道),即619.52Giga-voxels,可在<39分鐘內以0.8μm的Z-步長捕獲具有14位元分辨率的1.13TB的16位元原始數據,並保持超越Nyquistvoxel大小,超越Nyquist體積掃描速度和超越Nyquist線掃描速度<27attoliter,>1750um3/ms和>12mm/ms,同時在有效橫向分辨率小於500nm下,保持小於40us的有效像素停留時間。 Or, through a pulse laser source pulsed at a repetition rate of 70MHz, the data acquisition system's acquisition speed can be maximized at a speed of 70M samples per second, and each light pulse synchronously samples 1 voxel, and can scan 1.6× 1.6×1.6mm 3 volume, with 8800×8800×2000 (×4 channels), that is, 619.52Giga-voxels, which can capture 1.13TB with 14-bit resolution in <39 minutes with a 0.8μm Z-step The original 16-bit data, and keep surpassing the size of Nyquistvoxel, surpassing Nyquist volume scanning speed and surpassing Nyquist line scanning speed <27attoliter, >1750um 3 /ms and >12mm/ms, while keeping the effective lateral resolution less than 500nm Effective pixel dwell time of 40us.

在本發明的又一個實施例中,借助於一個脈衝雷射源以95MHz的重複頻率脈衝,以每秒95M個樣本的速度下最大化資料採集系統的採集速度,其每個光脈衝同步採樣1個voxel,能夠掃描1.6×1.6×1.6mm3的體積,具有12000×12000×2000(×4通道),即1.152Tera-voxels,可在Z步長為0.8μm時小於53分鐘下捕獲約2.1TB的16位元原始資料,分辨率為14位元,並保持超越Nyquist voxel大小,超Nyquist體積掃描速度和超越Nyquist線掃描速度<15attoliter,>1288um3/ms和>12mm/ms,同時在最高<420nm的有效橫向分辨率下保持<35ns的有效像素停留時間。 In yet another embodiment of the present invention, a pulsed laser source is used to pulse at a repetition frequency of 95MHz to maximize the acquisition speed of the data acquisition system at a speed of 95M samples per second, and each optical pulse is synchronously sampled 1 A voxel, capable of scanning a volume of 1.6×1.6×1.6mm 3 , with 12000×12000×2000 (×4 channels), that is 1.152 Tera-voxels, can capture about 2.1TB in less than 53 minutes when the Z step is 0.8μm The 16-bit original data, the resolution is 14 bits, and maintains the size of Nyquist voxel, the ultra-Nyquist volume scan speed and the ultra-Nyquist line scan speed <15attoliter, >1288um 3 /ms and >12mm/ms, at the same time at the highest < Under the effective lateral resolution of 420nm, an effective pixel dwell time of <35ns is maintained.

更進一步,資料採集系統200包括多編程控制演算法,該演算法用於使振鏡掃描鏡的慢速Y軸掃描(保持16位元精度運動)與諧振掃描鏡的快速X軸掃描同步,而無需發送外部電。每幀完成後觸發幀觸發信號,從而以每幀15720×8(×4通道)三維像素達到983fps的共振掃描器受限幀速率。另外,資料採集系統200使GPU加速的實時校準能夠校正由共振掃描鏡的非線性速度分佈所引起的沿快速X軸上的畸變。 Furthermore, the data acquisition system 200 includes a multi-programming control algorithm, which is used to synchronize the slow Y-axis scanning of the galvanometer scanning mirror (with 16-bit precision movement) and the fast X-axis scanning of the resonant scanning mirror. No need to send external power. After each frame is completed, the frame trigger signal is triggered, so that the limited frame rate of the resonance scanner of 983fps is reached with 15720×8 (×4 channels) voxels per frame. In addition, the data acquisition system 200 enables GPU accelerated real-time calibration to correct the distortion along the fast X axis caused by the nonlinear velocity distribution of the resonant scanning mirror.

根據本發明的大角度光域掃描系統100,通過全場(不減小 FOV)超越奈奎斯特採樣所解析的有效兩光子橫向和軸向分辨率分別為<0.5μm和<2μm,導致有效的3D分辨率<0.5飛升,橫向分辨率的標準偏差和平均值的標準誤差分別為<0.04μm和<0.007μm,軸向分辨率為<0.31μm和<分別為0.061μm According to the large-angle optical domain scanning system 100 of the present invention, through the entire field (without reducing FOV) The effective two-photon lateral and axial resolutions beyond the analysis of Nyquist sampling are <0.5μm and <2μm, respectively, resulting in an effective 3D resolution of <0.5 soaring, the standard deviation of the lateral resolution and the standard of the average The errors are respectively <0.04μm and <0.007μm, and the axial resolution is <0.31μm and <0.061μm respectively

Figure 108144297-A0305-02-0023-1
Figure 108144297-A0305-02-0023-1

Figure 108144297-A0305-02-0024-2
Figure 108144297-A0305-02-0024-2

Figure 108144297-A0305-02-0025-3
Figure 108144297-A0305-02-0025-3

100:大角度光域掃描系統 100: Large-angle optical domain scanning system

101:輸入雷射束 101: Input laser beam

102:共振掃描鏡 102: Resonance Scanning Mirror

103:檢流計掃描鏡 103: Galvanometer Scanning Mirror

104:掃描透鏡 104: Scanning lens

107:專用管透鏡 107: dedicated tube lens

109:高數值孔徑(NA)和低倍率物鏡 109: High numerical aperture (NA) and low magnification objectives

110:焦平面 110: focal plane

Claims (18)

一種用於高速深組織成像的大角度光域掃描系統,具有至少一個平方毫米的視場(FOV),且具有以超越奈奎斯特(Nyquist)之同步採樣解析的亞飛升(sub-femtoliter)有效3D分辨率,包括;一或多個(第1至第n個)脈衝雷射源,用於發射一或多個中心波長為λn的雷射束,並且第n個脈衝雷射源的超越奈奎斯特重複率為Rn
Figure 108144297-A0305-02-0028-11
An×Nn,其中An是奈奎斯特(Nyquist)限制的採樣率,其係以4倍的水平視場(FOV)乘以共振掃描器頻率再除以理論上受目鏡限制的橫向分辨率,用以在超越>1mm的水平視場(FOV)上解析微光學分辨率,並且Nn
Figure 108144297-A0305-02-0028-12
1的整數來表示每個三維像素(voxel)的雷射脈衝數;一諧振掃描鏡,其光學耦合到該一或多個脈衝雷射源;一檢流計掃描鏡(galvanometer scanning mirror),光學耦合到該諧振掃描鏡;一掃描透鏡,光學耦合到該檢流計掃描鏡;一專用管透鏡,包括三個平凸透鏡,每個平凸透鏡的有效焦距為500mm,該等透鏡組合在一起並光學耦合到該掃描透鏡;一與該專用管透鏡光學耦合的高數值孔徑(NA)和低倍物鏡,用以光域掃描一體積組織樣本,並用以收集樣本產生的一熒光信號,該熒光信號被導引至一光電倍增管(PMT)以產生一電信號;以及一資料採集系統,耦合以從該光電倍增管(PMT)接收該電信號,其中每個採樣事件分別與來自一脈衝雷射源或最高重複率脈衝雷射源(如果有 一或多個脈衝雷射源)的每個光脈衝同步,其中,該掃描透鏡和該專用管透鏡構成了一低倍率的擴束器,從而最大化了該視場(FOV),但同時在高數值孔徑(NA)和低倍率物鏡的一後孔徑上提供了擴大的光束大小,以保持高激發數值孔徑(NA)。
A wide-angle optical domain scanning system for high-speed deep tissue imaging, with a field of view (FOV) of at least one square millimeter, and a sub-femtoliter (sub-femtoliter) that is resolved by synchronous sampling beyond Nyquist Effective 3D resolution, including; one or more (1st to nth) pulsed laser sources, used to emit one or more laser beams with a center wavelength of λ n , and the nth pulsed laser source Beyond the Nyquist repetition rate R n
Figure 108144297-A0305-02-0028-11
A n ×N n , where A n is the sampling rate limited by Nyquist, which is 4 times the horizontal field of view (FOV) multiplied by the resonant scanner frequency and divided by the theoretically limited horizontal field of the eyepiece Resolution, used to resolve the micro-optical resolution in the horizontal field of view (FOV) beyond >1mm, and N n is
Figure 108144297-A0305-02-0028-12
An integer of 1 represents the number of laser pulses per voxel; a resonant scanning mirror, which is optically coupled to the one or more pulsed laser sources; a galvanometer scanning mirror, optical Coupled to the resonant scanning mirror; a scanning lens, optically coupled to the galvanometer scanning mirror; a special tube lens, including three plano-convex lenses, each plano-convex lens has an effective focal length of 500mm, and these lenses are combined and optical Coupled to the scanning lens; a high numerical aperture (NA) and low power objective lens optically coupled to the dedicated tube lens for scanning a volume of tissue sample in the optical domain, and for collecting a fluorescence signal generated by the sample, the fluorescence signal is Guided to a photomultiplier tube (PMT) to generate an electrical signal; and a data acquisition system coupled to receive the electrical signal from the photomultiplier tube (PMT), wherein each sampling event is associated with a pulsed laser source Or the highest repetition rate pulsed laser source (if there are one or more pulsed laser sources) each light pulse is synchronized, wherein the scanning lens and the special tube lens constitute a low-magnification beam expander, thereby maximizing The field of view (FOV), but at the same time provides an enlarged beam size on the rear aperture of a high numerical aperture (NA) and a low magnification objective lens to maintain a high excitation numerical aperture (NA).
如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中所述資料採集系統能夠以等於所述第n個脈衝雷射源的重複率Rn
Figure 108144297-A0305-02-0029-13
An×Nn的採樣率分別進行同步採樣,亦即,該雷射源或該最高重複率脈衝雷射源(如果是一或多個脈衝雷射源),且每個採樣事件均與每個光脈衝同步,從而達到一超越奈奎斯特(超過奈奎斯特準則)像素數目以在跨越水平視場(FOV)>1mm上解析微光學分辨率。
The wide-angle optical domain scanning system for high-speed deep tissue imaging as described in item 1 of the scope of patent application, wherein the data acquisition system can achieve a repetition rate equal to the nth pulsed laser source R n
Figure 108144297-A0305-02-0029-13
The sampling rate of A n ×N n is synchronized sampling, that is, the laser source or the highest repetition rate pulsed laser source (if it is one or more pulsed laser sources), and each sampling event is related to each The two light pulses are synchronized to achieve a number of pixels exceeding Nyquist (exceeding the Nyquist criterion) to resolve the micro-optical resolution across the horizontal field of view (FOV)>1mm.
如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,所述高數值孔徑(NA)和低倍率物鏡的數值孔徑大於0.9,而有效倍率
Figure 108144297-A0305-02-0029-15
20X。
The wide-angle optical scanning system for high-speed deep tissue imaging as described in the first item of the patent application, wherein the numerical aperture of the high numerical aperture (NA) and low magnification objective lens is greater than 0.9, and the effective magnification
Figure 108144297-A0305-02-0029-15
20X.
如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,所述共振掃描鏡的頻率為至少4kHz。 The wide-angle optical domain scanning system for high-speed deep tissue imaging as described in item 1 of the scope of patent application, wherein the frequency of the resonant scanning mirror is at least 4 kHz. 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,所述共振掃描鏡提供12mm×9.25mm的淨孔徑,該淨孔徑被輸入的一或多個雷射束過度填充,以最大化掃描束的大小。 The wide-angle optical domain scanning system for high-speed deep tissue imaging as described in item 1 of the scope of patent application, wherein the resonant scanning mirror provides a clear aperture of 12mm×9.25mm, and the clear aperture is inputted by one or more The laser beam is overfilled to maximize the size of the scanning beam. 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,一第一脈衝雷射源操作於以1070nm為中心而重複頻率為70MHz,一第二脈衝雷射源操作於以1260nm為中心而重複頻率為95MHz。 The wide-angle optical domain scanning system for high-speed deep tissue imaging as described in the first item of the scope of patent application, wherein a first pulsed laser source is operated at 1070nm with a repetition frequency of 70MHz, and a second pulsed laser The radiation source is operated at 1260nm as the center and the repetition frequency is 95MHz. 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,所述專用管透鏡包括組合在一起的該三個平凸透鏡,每個平凸透鏡具有一500毫米的有效焦距,從而產生一166.7毫米的組合有效焦距,並提供直徑大於60毫米的大淨孔徑,以支持該共振掃描鏡和該檢流計掃描鏡的大掃描角。 The wide-angle optical domain scanning system for high-speed deep tissue imaging as described in item 1 of the scope of patent application, wherein the dedicated tube lens includes the three plano-convex lenses combined together, and each plano-convex lens has a 500 mm Therefore, a combined effective focal length of 166.7 mm is generated, and a large clear aperture with a diameter greater than 60 mm is provided to support the large scanning angle of the resonance scanning mirror and the galvanometer scanning mirror. 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,分別具有110mm和166.7mm的有效焦距的所述掃描透鏡和所述專用管透鏡構成了1.515的放大率的一低放大率中繼系統,俾在高數值孔徑和低倍物鏡的後孔徑上提供高達±7.16°的掃描角,在整個該掃描透鏡上提供高達±10.8°的掃描角,從而提供方形和圓形視場(FOV)的最大直徑分別為1.6×1.6mm2和2.26mm,但同時在高NA和低倍率物鏡(NA>0.9)的後孔徑上提供了大於14mm(最大18mm)的擴大光束大小。 The wide-angle optical scanning system for high-speed deep tissue imaging as described in item 1 of the scope of patent application, wherein the scanning lens and the dedicated tube lens respectively having an effective focal length of 110mm and 166.7mm constitute a 1.515 A low-magnification relay system with high magnification to provide a scan angle of up to ±7.16° on the back aperture of a high numerical aperture and low-power objective lens, and a scan angle of up to ±10.8° on the entire scanning lens, thereby providing The maximum diameters of the square and circular fields of view (FOV) are 1.6×1.6mm 2 and 2.26mm, respectively, but at the same time, it provides more than 14mm (maximum 18mm) on the back aperture of high NA and low magnification objectives (NA>0.9) Expand the beam size. 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,一具有直徑為9.25mm而λ=1070nm的輸入光束和被模擬為近軸透鏡的高數值孔徑NA和低倍率物鏡,產生均方根(RMS)在X和Y方向的0°和±7.7°離軸配置(在該掃描透鏡上)的波前誤差(無散焦)和Strehl比分別為<0.07λ和>80%,確認了衍射-在FOV的邊緣中心1.6×1.6mm2處的有限性能,在1.6×1.6mm2=2.56mm2方形FOV下表明視場FOV的>78%,即π×0.82mm2=2.01mm2圓形FOV的衍射極限(Maréchal標準)。 The wide-angle optical scanning system for high-speed deep tissue imaging as described in the first item of the patent application, in which an input beam with a diameter of 9.25mm and λ=1070nm and a high numerical aperture simulated as a paraxial lens NA and low-magnification objectives, generating root mean square (RMS) in the X and Y directions 0° and ±7.7° off-axis configuration (on the scanning lens) wavefront error (no defocus) and Strehl ratio are < 0.07λ and >80%, confirming diffraction-limited performance at 1.6×1.6mm 2 at the edge center of FOV. Under 1.6×1.6mm 2 =2.56mm 2 square FOV, it shows that the FOV of the field of view is >78%, which is π ×0.8 2 mm 2 =2.01mm 2 The diffraction limit of a circular FOV (Maréchal standard). 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,一具有直徑為9.25mm而λ=1070nm的輸入光束和被模擬為近軸透鏡的高數值孔徑NA和低倍率物鏡,產生在一固定影像平面之RMS波前誤差(沒有散焦),同時在掃描透鏡於X和Y方向上在離軸0°和±7.7°的所有配置上均在0.1λ以下,這意味著系統的低場曲率。 The wide-angle optical scanning system for high-speed deep tissue imaging as described in the first item of the patent application, in which an input beam with a diameter of 9.25mm and λ=1070nm and a high numerical aperture simulated as a paraxial lens NA and low magnification objective lenses produce RMS wavefront error (no defocus) in a fixed image plane, and at the same time, the scanning lens in the X and Y directions at 0° and ±7.7° off-axis in all configurations are 0.1λ In the following, this means the low field curvature of the system. 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,所述熒光信號的有效收集是通過具有3.75的縮小倍率的一中繼系統來實現的,導致一為4mm的聚焦光斑直徑位於所述光電倍增管PMT的一感光區域內。 The wide-angle optical domain scanning system for high-speed deep tissue imaging as described in item 1 of the scope of patent application, wherein the effective collection of the fluorescent signal is realized by a relay system with a reduction magnification of 3.75, resulting in A focused spot diameter of 4 mm is located in a photosensitive area of the photomultiplier tube PMT. 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,一第一轉向鏡和一第二轉向鏡與該掃描透鏡光學耦合,該專用管透鏡與該第二轉向鏡光學耦合,一第三轉向鏡光學耦合至該專用管透鏡,該高數值孔徑NA和該低倍率物鏡光學耦合至該第三轉向鏡,以實現便攜式尺寸。 The wide-angle optical domain scanning system for high-speed deep tissue imaging as described in item 1 of the scope of patent application, wherein a first turning mirror and a second turning mirror are optically coupled with the scanning lens, and the dedicated tube lens and the The second turning mirror is optically coupled, a third turning mirror is optically coupled to the dedicated tube lens, and the high numerical aperture NA and the low magnification objective lens are optically coupled to the third turning mirror to achieve a portable size. 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,另在所述高數值孔徑NA和低倍物鏡該後孔徑以及該光電倍增管(PMT)之間依序包括一二向色分束器,一雙凸面鏡,一第四轉向鏡,一第五轉向鏡和一平凸透鏡。 The wide-angle optical domain scanning system for high-speed deep tissue imaging as described in item 1 of the scope of patent application, wherein, the rear aperture of the high numerical aperture NA and low power objective lens and the photomultiplier tube (PMT) It includes a dichroic beam splitter, a biconvex mirror, a fourth turning mirror, a fifth turning mirror and a plano-convex lens in sequence. 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,為了超過具有亞微米橫向光學分辨率的完整視場FOV的奈奎斯特準則的要求下,所述資料採集系統提供了同時採樣4個通道的能力,每秒採樣率高達125M樣本,具有數據採集,傳輸,處理,預覽和 同時存儲4通道14位元分辨率的16位元原始數據的能力,並且單幀像素數為15720×16000(×4通道),每幀獲取1G像素,同時保持0.5fps。 The wide-angle optical domain scanning system for high-speed deep tissue imaging as described in item 1 of the scope of patent application, wherein, in order to exceed the requirements of the Nyquist criterion of a full field of view FOV with submicron lateral optical resolution, The data acquisition system provides the ability to sample 4 channels simultaneously, with a sampling rate of up to 125M samples per second, with data acquisition, transmission, processing, preview and The ability to store 4 channels of 14-bit resolution 16-bit original data at the same time, and the number of pixels in a single frame is 15720×16000 (×4 channels), and each frame obtains 1G pixels while maintaining 0.5fps. 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,所述資料採集系統的採集速度通過以70MHz的重複率脈衝的一個脈衝雷射源以每秒70M個樣本的速度最大化,每個光脈衝採樣1個三維像素,能夠掃描1.6×1.6×1.6mm3的體積,具有8800×8800×2000(×4通道),亦即619.52Giga-voxels,捕獲1.13TB的16位元原始數據在39分鐘內以0.8μm Z步長以14位元分辨率進行數據處理,並保持奈奎斯特超過三維像素尺寸,奈奎斯特超過體積掃描速度和奈奎斯特超過線掃描速度<27attoliter,>1750μm3/ms和>12mm/ms,同時保持<40ns的有效像素停留時間,最高有效橫向分辨率<500nm。 The large-angle optical domain scanning system for high-speed deep tissue imaging as described in the first item of the scope of patent application, wherein the acquisition speed of the data acquisition system is achieved by a pulsed laser source pulsed at a repetition rate of 70MHz at a rate per second The speed of 70M samples is maximized, and each light pulse samples 1 3D pixel, which can scan a volume of 1.6×1.6×1.6mm 3 with 8800×8800×2000 (×4 channels), that is, 619.52Giga-voxels, capture 1.13TB of 16-bit raw data is processed in 39 minutes with a 0.8μm Z step size and 14-bit resolution, and the Nyquist is kept beyond the 3D pixel size, and the Nyquist exceeds the volumetric scanning speed and Nyquist Frost line scanning velocity exceeds <27attoliter,> 1750μm 3 / ms and> 12mm / ms, while maintaining <40ns effective pixel dwell time, the most effective lateral resolution of <500nm. 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,借助於以95MHz重複頻率脈衝的一個脈衝雷射源以每秒95M個樣本的速度下,使所述資料採集系統的採集速度最大化,每個光脈衝採樣1個三維像素,能夠掃描1.6×1.6×1.6mm3的體積,具有12000×12000×2000(×4通道),亦即1.152Tera-voxels,捕獲2.1TB的16位元原始數據在<53分鐘內以0.8μm Z步長以14位元分辨率進行數據處理,並保持Nyquist超出三維像素尺寸,Nyquist超出體積掃描速度和Nyquist超出線掃描速度<15attoliter,>1288μm3 ms和>12mm/ms,同時保持<35ns的有效像素停留時間,最高有效橫向分辨率<420nm。 The wide-angle optical domain scanning system for high-speed deep tissue imaging as described in item 1 of the scope of patent application, in which a pulsed laser source pulsed at a repetition rate of 95MHz is used at a speed of 95M samples per second. The collection speed of the data collection system is maximized. Each light pulse samples 1 three-dimensional pixel, can scan a volume of 1.6×1.6×1.6mm 3 , and has 12000×12000×2000 (×4 channels), that is, 1.152 Tera- voxels, capturing 2.1TB of 16-bit raw data in <53 minutes with 0.8μm Z step size and 14-bit resolution for data processing, and keeping Nyquist beyond the voxel size, Nyquist beyond the volume scan speed and Nyquist beyond the line scan The speed is <15attoliter, >1288μm 3 ms and >12mm/ms, while maintaining the effective pixel dwell time of <35ns, and the highest effective lateral resolution is <420nm. 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,所述資料採集系統另包括一多編程控制演算法,用於通過該 檢流計掃描鏡對慢速Y軸掃描進行同步(保持16位元精度運動)與通過共振掃描鏡進行快速X軸掃描,而無需在每幀完成後發送外部電子幀觸發信號,從而達到共振掃描器受限的幀速率,為983fps,每幀15720×8(×4通道)三維像素。 The wide-angle optical scanning system for high-speed deep tissue imaging as described in item 1 of the scope of patent application, wherein the data acquisition system further includes a multi-programming control algorithm for passing the The galvanometer scanning mirror synchronizes the slow Y-axis scanning (to maintain 16-bit precision motion) and fast X-axis scanning through the resonance scanning mirror, without the need to send an external electronic frame trigger signal after each frame is completed, so as to achieve resonance scanning The limited frame rate of the camera is 983fps, with 15720×8 (×4 channels) voxels per frame. 如申請專利範圍第1項所述的用於高速深組織成像的大角度光域掃描系統,其中,由全視場(不減小所述視場FOV)、超過奈奎斯特採樣的有效兩光子橫向和軸向分辨率分別為<0.5μm和<2μm,導致有效的3D分辨率<0.5飛升,橫向分辨率的標準偏差和平均值的標準誤差分別為<0.04μm和<0.007μm,和軸向分辨率為<0.31μm和<0.061μm。 The wide-angle optical domain scanning system for high-speed deep tissue imaging as described in item 1 of the scope of patent application, in which the full field of view (without reducing the FOV of the field of view) and the effective two of the Nyquist sampling The photon lateral and axial resolutions are <0.5μm and <2μm, respectively, resulting in an effective 3D resolution of <0.5 soaring. The standard deviation of the lateral resolution and the standard error of the average are <0.04μm and <0.007μm, respectively. The direction resolution is <0.31μm and <0.061μm.
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