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TWI329743B
TWI329743B TW96102422A TW96102422A TWI329743B TW I329743 B TWI329743 B TW I329743B TW 96102422 A TW96102422 A TW 96102422A TW 96102422 A TW96102422 A TW 96102422A TW I329743 B TWI329743 B TW I329743B
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cervical
methylation
target gene
seq
dna
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TW96102422A
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TW200831900A (en
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Nat Defense Medical Ct
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1329743 九、發明說明: 【發明所屬之技術領域】 錢明側於-種癌賴_方法,_是指—伽f基化dna作 生物標記的癌症篩檢的方法》 ‘ 【先前技術】 w 子宮頸癌是全球及台灣女性主要的死因之一,根據職年世界衛生植 織(WHO)的統計,子宮頸癌為全球女性癌症死因的第二位,僅次於乳癌; ^ 錢射子宮頸蘭檢是獅子宮的最佳方法,習肝宮職篩檢的 方式主要有兩種,-是最常見的子宮頸抹片檢查(paps,),另一則為人類 乳突病毒檢驗(HPVtesting);子宮頸抹片檢查是取出子寅頸部之分泌物以 ,顯微織察其中脫落之上皮細胞中」是否有癌病變產生,以+期_子宮 頸癌;❿卿檢驗則是以反轉錄聚合酶連鎖反應扣赠咖咖响 polymemse chain reaction,RT-PCR)檢查樣本令是否存在有人類乳突病毒 (human Papm〇ma virus,HPV)病毒基因的表現。 鲁然而,由於子宮頸抹片檢查(Pap smear)需要靠醫師取樣、檢驗師/病理 醫師判讀抹>1,除了容易產生高偽陰性率(Highfalsenegativeme)而延遲癌 前病變的診斷與治療之外,再者’所需的人力成本太高,這對許多發展中 的國豕來說,有推廣上的困難;另一方面,人類乳突病毒檢驗 雖具有兩敏感度’但卻容易造成高偽陽性率(High fajse p0sitive rate),不僅 讓病患白白擔心,也會浪費許多醫療資源在偽陽性患者的追蹤檢查上;因 此’如何提高子宮頸癌檢驗方法的準確性及方便性,是推廣子宮頸癌檢驗 的重要課題之一》 在子宮頸癌的病原學上,感染致癌的人類乳突病毒(HPV)是最顯著的危 12 2^74 主,一一一一一一二^''^κ"Λ"·^*··;··*ννν·'·· ;— ................ 險因子;zurHausen於2002年的報告顯示,“高危險”人類乳突病毒(Ηρν) 產生的Ε6/Ε7致癌蛋白(oncoprotein)會與腫瘤抑制基因/753令/出作用,造成 細胞週期調節異常;事實上,人類乳突病毒(HPV)的DNA可在所有的子宮 頸癌病例中被偵測到。然而,感染人類乳突病毒(HPV)雖為產生子宮頸癌必 要的條件’但卻不足以導致子宮頸癌的發生;大約有60%低度鱗狀細胞上 皮内病變(low-grade squamous intraepithelial lesions,LSIL)會復原(regress), v 30%則會持續(persist),5-10%會發展為高度鱗狀細胞上皮内病變(high-grade •鲁 squamous intraepitheliallesions,HSIL) ’ 只有少於 1%會變成子宮頸癌。hpv 的持續感染以及病毒量(v iral lo ad)可能是發展成為高度鱗狀細胞上皮内病 變(HSIL)及癌症的決定因子;然而,子宮頸癌發生的分子機制仍有待確認。 其他的因子,如:環境及基因的改變,可能也在子宮頸角質細胞的惡 化上扮演重要的角色;且不論是否由HPV所啟動,基因的改變造成基因組 • 的不穩定已長久被認為是子宮頸癌發生的重要機制,由細胞發生學上的研 究顯示’在子宮頸癌細胞内存在有非隨機染色體的改變(non_rand〇m chromosomal changes);另外,數個分子遺傳學的研究則鑑識出一些時常發 生去異質化(loss of heterozygosity, LOH)的位置,這些位置可能跟子宮頸癌 發生時的腫瘤抑制基因(tumor suppressor genes, TSGs)有關聯。 - 基因的缺失(genomic deletions)被認為是腫瘤形成的重要因素,長久以 來,我們都習慣了基因組中的編碼是仰賴ATCG四個鹼基排列的觀念, Knudson早在1975年即提出雙重受創理論(two-hit theory),指出一些同源腫 瘤抑制基因伴隨的突變或缺失可能造成或易造成癌症的發生;然而,其他 影響表現型(phenotype)的訊息可能存於被修飾過的驗基5-曱基胞嘧咬 (5-methylcytosine)中,5-甲基胞嘧咬被發現存在於哺乳類動物細胞内的迴文 6 1329743 序列5’-CpG-3’中’在哺乳類動物細胞内除了一些被稱為“CpG島”(CpG islands, CGIs)的區域之外,大多數的CpG雙核苷酸對都被甲基化’ CpG島 是指在大約1000個驗基對(1Kb)的區域内含有大量的GC-以及CpG-,通常 位於基因的附近,且在廣泛表現的基因之啟動子附近被發現。胞嘧啶的甲 基化發生在DNA合成後,自一曱基捐贈者3_腺核苷曱硫胺酸 OS-adenosylmethionine,SAM)將一甲基經酵素轉移到胞嘧啶第5個碳的位置 u 上’該酵素反應係由DNA曱基轉移酶(DNA methyltransferase, DNMTs)執 .· 行,DNMT1是哺乳類動物主要的甲基轉移酶,係負責將半甲基化位置複製 後修復(post-rep丨icative restoration)為全甲基化’被稱為維持甲基化 (maintenance methylation);反之,DNMT3A 及 DNMT3B 則被認為主要負責 甲基化新的位置,進行一種稱為重辦甲基化(办w〇v〇 methyla|;i〇n)的步驟。1329743 IX. Description of the invention: [Technical field to which the invention pertains] Qian Ming side------------------------------------------------------------------------- Cervical cancer is one of the leading causes of death among women in the world and in Taiwan. According to the World Health Organization (WHO) statistics, cervical cancer is the second leading cause of cancer death among women worldwide, second only to breast cancer; ^ Qian shot cervical blue The examination is the best method of the Lions Palace. There are two main methods for screening the liver and the palace. - It is the most common Pap smear (paps), and the other is HPVtesting; Pap smear is to remove the secretion from the neck of the scorpion, microscopically weave the epithelial cells in the detachment. "Can there be cancerous lesions, + stage _ cervical cancer; ❿ Qing test is reverse transcriptase The chain reaction was given a polymemse chain reaction (RT-PCR) to examine the presence of human papmoma virus (HPV) virus genes. However, because of the Pap smear, it is necessary to rely on the doctor's sampling, the examiner/pathologist to interpret the wipes >1, in addition to prone to high false negative rate (High false negative) and delay the diagnosis and treatment of precancerous lesions. Moreover, the labor cost required is too high, which has difficulty in promotion for many developing countries; on the other hand, human papilloma virus test has two sensitivities' but it is easy to cause high falsehood. The high rate (High fajse p0sitive rate) not only makes patients worry, but also wastes many medical resources on the follow-up examination of false positive patients; therefore, 'how to improve the accuracy and convenience of cervical cancer test methods is a promotion. One of the important topics in cervical cancer testing. In the etiology of cervical cancer, human papillomavirus (HPV) infection is the most significant risk. 12 2 κ"Λ"·^*·····*ννν·'·· ;- ................ risk factor; zurHausen’s 2002 report shows that “high risk Ε6/Ε7 oncoprotein produced by human papillomavirus (Ηρν) It will interact with the tumor suppressor gene /753, causing abnormal cell cycle regulation; in fact, human papillomavirus (HPV) DNA can be detected in all cases of cervical cancer. However, infection with human papillomavirus (HPV) is a necessary condition for cervical cancer 'but not enough to cause cervical cancer; about 60% of low-grade squamous intraepithelial lesions , LSIL) will regress, v 30% will persist, 5-10% will develop into high-grade squamous intraepithelialles (HSIL) 'only less than 1% Will become cervical cancer. The persistent infection of hpv and the amount of virus (v iral lo ad) may be the determinants of the development of highly squamous intraepithelial lesions (HSIL) and cancer; however, the molecular mechanisms of cervical cancer development remain to be confirmed. Other factors, such as environmental and genetic changes, may also play an important role in the deterioration of cervical keratinocytes; and whether or not initiated by HPV, genetic changes have caused genomic instability to be considered for a long time. An important mechanism of cervical cancer development, cytogenetic studies show that 'non-rand〇m chromosomal changes are present in cervical cancer cells; in addition, several molecular genetic studies have identified some Locations of loss of heterozygosity (LOH) often occur, which may be associated with tumor suppressor genes (TSGs) when cervical cancer occurs. - genomic deletions are considered to be important factors in tumor formation. For a long time, we have been accustomed to the idea that the coding in the genome depends on the four bases of ATCG. Knudson proposed double-invasive theory as early as 1975. (two-hit theory), indicating that mutations or deletions accompanying some homologous tumor suppressor genes may cause or cause cancer; however, other information affecting phenotype may be present in the modified test group 5- In 5-methylcytosine, 5-methylcytosine was found in the palindrome of mammalian cells. 6 1329743 Sequence 5'-CpG-3' in the mammalian cells except for some Outside the region called CpG islands (CGIs), most CpG dinucleotide pairs are methylated' CpG islands refer to a large number of regions of approximately 1000 test pairs (1Kb). GC- and CpG-, usually located near the gene, are found near the promoter of a widely expressed gene. The methylation of cytosine occurs after DNA synthesis, from a thiol donor 3_adenosylmethionine, SAM) to transfer the monomethyl group to the 5th carbon position of cytosine. The 'enzyme reaction is carried out by DNA methyltransferase (DNMTs), which is the main methyltransferase of mammals. It is responsible for the replication of the hemimethylated site and post-rep丨Icative restoration) is called hypermethylation, which is called maintenance methylation; on the contrary, DNMT3A and DNMT3B are considered to be mainly responsible for the new position of methylation, and a type of methylation is called The steps of v〇methyla|;i〇n).

CpG雙核苦酸對甲基化的遺失(l〇ss methylati〇n),意即一般的低度甲 基化,疋癌細胞内的第一個超遺傳異常(epigeneticabnormality);然而,在過 去幾年内的研究卻顯示,特定位置(例如:一些腫瘤抑制基因)的高度甲基化 • (slte-sPeciflc hypermethylation)與其功能的喪失有關,這可能會在癌症生成時 提供選擇優勢(selective advantages);在啟動子區域上CpG島的高度甲基 化’可以藉由組蛋白修飾⑼伽此m〇dificati〇n)伴隨接續而來的基因默化現 象(gene silencing) ’來引起染色質改造rem〇deiing);除了染色體 缺失及基因突變之外,經由啟動子的高度甲基化所造成腫瘤抑制基因的超 遺傳默化現象(epigenetic silencing)也常見於人類癌症中。 最近的流行病學研究顯示,血清葉酸鹽(serum folate)的濃度(一種甲基 的主要來源)與HPV的感染和清除有關聯;在甲基週期(methyicycle)的代謝 作用中’酵素的基因多型性(genetic polymorphisms)也曾被報導與子宮頸上 7 .·..;,,.··々/···. V. .λ·.·. v ·.. γ.·.···.· ..... 1329743 一… 皮内病變的發展有關;如同超基因演化的觀念一般,DNA曱基化與子宮頸 癌間關聯的研究也同樣盛行,子宮頸癌的DNA甲基化研究日與遽增,顯示 使用f基化作為子宮頸癌篩檢的可能性;由於遺傳與環境交互作用的特 性,腫瘤抑制基因甲基化程度因不同的基因及不同的族群而異,不同的疾 病也會有不同的曱基化表現型(methylatorphenotypes);然而,子宮頸癌的甲 基化表現型以及其與HPV基因型的關聯仍未知,而子宮頸癌中有何特定的 * 基因會被甲基化,以及需要多少基因方可達到臨床應用的需求,這些問題 .· 仍是未來需要被確認的議題》 由此可見,上述習用子宮頸癌篩檢方法仍有諸多缺失,實非一良善之 設計者,而巫待加以改良。 • 本案發明人鑑於上述習用子宮釋癌篩檢方法所衍生的各項缺點,乃亟 思加以改良創新,並經多年苦,。孤t旨潛心、研究後’終於成功研發完成本件 癌症篩檢的方法。 【發明内容】 φ 本發明之目的即在於提供一種子宮頸癌篩檢的方法以作為第一線子 呂頸癌的篩檢(cancer screen)» 本發明之次一目的係在於提供一種子宮頸癌篩檢的方法,該方法除了 可作為第-線子宮頸癌的ϋ檢之外,亦可作為第二線子宮頸癌_檢辅 助人類乳突病毒檢驗(HPVtesting),以達到更準確之子宮頸癌筛檢效果。 本發明之另-目的係在於提供一種癌症診斷的方法,該方法除可應用 在子宮頸癌的檢測上,亦可應用於其他癌症(如:印巢癌、肝癌)的檢測,以 輔助異常檢體之診斷。 可達成上紐明目的之—種癌症篩檢的方法,係_受職體細胞中 1329743 目標基因甲基化的狀態,以作為癌症有無的篩檢指標,該方法包含下列步 趣· * 步驟1提供一受測檢體; 步驟2檢測該受測檢體之基因組DNA中至少一個目標基因的cpG序 列甲基化狀態,該目標基因係由SOX卜PAX卜LMX1A、 NKX6-1、WT1以及0NECUT1所組成;以及Loss of methylation of CpG dinuclear acid (l〇ss methylati〇n), meaning general low methylation, the first epigenetic abnormality in cancer cells; however, in the past few years Studies have shown that certain sites (eg, some tumor suppressor genes) are highly methylated (slte-sPeciflc hypermethylation) associated with loss of function, which may provide selective advantages in cancer generation; The hypermethylation of CpG islands on the sub-region can be accompanied by histone modification (9) gamma mificdificati〇n) followed by successive gene silencing to cause chromatin modification rem〇deiing; In addition to chromosomal deletions and gene mutations, epigenetic silencing of tumor suppressor genes via hypermethylation of promoters is also common in human cancers. Recent epidemiological studies have shown that the concentration of serum folate (a major source of methyl) is associated with HPV infection and clearance; in the metabolism of the methylation cycle (methycycle), the gene for the enzyme Genetic polymorphisms have also been reported on the cervix. . . . . , . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ··· ..... 1329743 a... The development of intradermal lesions; as with the concept of supergene evolution, studies on the association between DNA thiolation and cervical cancer are also prevalent, DNA methylation of cervical cancer Study days and increases, showing the possibility of using f-based as a screening for cervical cancer; due to the nature of genetic and environmental interactions, the degree of methylation of tumor suppressor genes varies with different genes and different ethnic groups, different Diseases also have different methylatorphenotypes; however, the methylation phenotype of cervical cancer and its association with HPV genotypes are still unknown, and what specific * genes are present in cervical cancer Methylation, and how many genes are needed to meet clinical application needs These problems are still issues that need to be confirmed in the future. It can be seen that there are still many shortcomings in the above-mentioned methods for screening cervical cancer, which is not a good designer, but the witch is to be improved. • The inventors of the present invention have made improvements and innovations in view of the above-mentioned shortcomings derived from the above-mentioned uterine cancer screening screening methods, and have suffered for many years. After the study, I finally succeeded in developing and developing this method of cancer screening. SUMMARY OF THE INVENTION φ The object of the present invention is to provide a method for screening for cervical cancer as a first screen of cancer screening. The second object of the present invention is to provide a cervical cancer. Screening method, in addition to being used as a first-line cervical cancer test, it can also be used as a second-line cervical cancer test for HPV testing to achieve more accurate cervical cancer. Screening effect. Another object of the present invention is to provide a method for diagnosing cancer, which can be applied to the detection of cervical cancer, and can also be applied to the detection of other cancers (eg, nest cancer, liver cancer) to assist abnormal examination. Diagnosis of the body. A method for screening cancers that can achieve the purpose of the above-mentioned neoplasms, is the state of methylation of the 1329743 target gene in the somatic cells, as a screening indicator for the presence or absence of cancer, and the method includes the following steps: * Step 1 Providing a test subject; Step 2 detecting a methylation status of a cpG sequence of at least one target gene in the genomic DNA of the test subject, the target gene is obtained by SOX, PAX, LMX1A, NKX6-1, WT1, and 0NECUT1 Composition;

步驟3根據該目標基因曱基化狀態的有無,判斷該檢體是否具有癌症 或癌前病變病變。 其中該受測檢體為子宮頸抹片、腹水、血液、尿液、糞便、痰、口腔 黏膜細胞、胃液、膽汁、子宮頸上皮細胞等。 其中該目標基因的CpG序列贾基化狀態檢測方法為甲基化特異性聚合 酶連鎖反應(methylation-specific PCR,MSP)、定量甲基化特異性聚合酶連鎖 反應(quantitative methylation-specific PCR,QMSP)、亞硫酸鹽定序(bisulfite sequencing,BS)、微陣列(microarrays)、質譜儀分析(mass specfr〇meter)、變. 性咼效液相色譜(denaturing high-performance liquid dirormtagraphy, DHPLC) 〇 其中該目標基因SOX1係具有知SEQ ID No: 1所示之核苷酸序列。 其中該目標基因PAXI係具有如SEQ ID No·· 2所示之核苷酸序列》 其中該目標基因LMX1A係具有如SEQ ID No: 3所示之核苷酸序列。 其中該目標基因NKX6-1係具有如sEQEDNo:4所示之核苷酸序列。 其中該目標基因WT1係具有如SEQtt)No: 5所示之核苷酸序列》 其中該目標基因0NECUT1係具有如SEQIDNo:6所示之核苷酸序列° 本發明進-錢供-種子宮頸鋪檢的方法,係檢測受繼體細胞中 1329743 目標基因甲基化的狀態,以作為子宮頸癌有無的篩檢指標,該方法包含下 列步驟: 步驟1提供一受測檢體; 步驟2檢測該受測檢體之基因組DNA中至少一個目標基因的CpG序 列甲基化狀態,該目標基因係由S0X1、PAX1、LMX1A、 NKX6-;! ' WT1以及0NECUT1所組成;以及 步驟3根據目標基因甲基化狀態的有無,判斷該檢體是否具有子宮頸 癌及癌前病變。 其中該受測檢體為子宮頸抹片、血液、尿液、子宮頸上皮細胞等。 其中該受測檢體為異常之子宮頸抹片。 其中該受測檢體為人類乳突病毒檢驗出PV testing)呈陽性(0〇3迅代)之 子宮頸細胞檢體。 其中該目標基因的CpG序列甲基化狀態檢測方法為甲基化特異性聚合 酶連鎖反應(methylation-specific PCR,MSP)、定量甲基化特異性聚合酶連鎖 反應(quantitative methylation-specific PCR,QMSP) ' 亞硫酸鹽定序(bisulfite sequencing,BS)、微陣列(microarrays)、質譜儀分析(mass spectr〇meter)、變 性高效液相色譜(denaturing high-performanee liquid ehr_tography, DHPLC)。 其申該目標基因S0X1係具有如SEQIDNo:丨所示之核苷酸序列β 其中該目標基因ΡΑΧ1係具有如SEQIDNo:2所示之核苷酸序列》-其中該目標基因LMX1A係具有如SEQ!dNo:3所示之核苷酸序列β 其中該目標基因ΝΚΧ6-1係具有如SEQIDNo:4所示之核苷酸序列。 其中該目標基因WT1係具有如SEQIDN〇:5所示之核苷酸序列。 Ϊ329743 其中該目標基因0NECUT1係具有如SEQlDNo:6所示之核苷酸序列β 本發明進一步提供一種卵巢癌篩檢的方法,係檢測受測檢體細胞中目 標土因曱基化的狀態’以作為印巢癌有無的筛檢才旨標,該方法包含下列步 驟: 步驟1提供一受測檢體; 步驟2檢測該受測檢體之基因組Dna中至少一個目標基因的CpG序 列甲基化狀態’該目標基因係由S〇xi、PAXi、LMX1A所組 成;以及 步驟3根據目標基因甲基化狀態的有無,判斷該檢體是否具有卵巢癌 及癌前病變。 其中該受測檢體為腹水、血液、尿液等。 其中該目標基因的CpG序列甲基化狀態檢測方法為甲基化特異性聚合 酶連鎖反應(raethylation-specific PCR,MSP)、定量曱基化特異性聚合酶連鎖 反應(quantitative methylation-specific PCR, QMSP)、亞硫酸鹽定序(bisulfite sequencing, BS)、微陣列(microarrays)、質譜儀分析(mass spectrometer)、變 性尚效液相色譜(denaturing high-performance liquid chromatography, DHPLC)、焦填酸定序(pyrosequencing) 〇 其中該目標基因SOX1係具有如SEQ ID No: 1所示之核苷酸序列。 其中該目標基因PAX1係具有如SEQIDNo:2所示之核苷酸序列。 其中該目標基因LMX1A係具有如SEQDDNo:3所示之核苷酸序列。 本發明進一步提供一種肝癌篩檢的方法,係檢測受測檢體細胞中目標 基因甲基化的狀態’以作為肝癌有無的篩檢指標,該方法包含下列步驟: 步驟1提供一受測檢體; 1329743 步驟2檢測該受測檢體之基因組DNA中至少一個目標基因的cpG序 列甲基化狀態’該目標基因係由SOX卜NKX6-1所組成;以 及 步驟3根據目標基因甲基化狀態的有無,判斷該檢體是否具有肝癌及 癌前病變。 其中該受測檢體為腹水、血液、尿液、糞便、胃液、膽汁等。Step 3 determines whether the specimen has cancer or precancerous lesions based on the presence or absence of the target gene thiolation state. The tested specimens are Pap smear, ascites, blood, urine, feces, sputum, oral mucosal cells, gastric juice, bile, cervical epithelial cells, and the like. The method for detecting the state of the CpG sequence of the target gene is methylation-specific PCR (MSP), quantitative methylation-specific PCR (QMSP) ), sulfite sequencing (BS), microarrays, mass specfr〇meter, denaturing high-performance liquid dirormtagraphy (DHPLC) The target gene SOX1 has the nucleotide sequence shown by SEQ ID No: 1. Wherein the target gene PAXI has a nucleotide sequence as shown in SEQ ID No. 2, wherein the target gene LMX1A has the nucleotide sequence as shown in SEQ ID No: 3. Wherein the target gene NKX6-1 has a nucleotide sequence as shown by sEQED No: 4. Wherein the target gene WT1 has a nucleotide sequence as shown in SEQ tt. No. 5: wherein the target gene ONECUT1 has a nucleotide sequence as shown in SEQ ID No: 6. The present invention enters the money supply-seed cervical paving The method for detecting is to detect the methylation status of the 1329443 target gene in the recipient cell as a screening index for the presence or absence of cervical cancer, and the method comprises the following steps: Step 1 provides a test subject; Step 2 detects the test The methylation status of the CpG sequence of at least one target gene in the genomic DNA of the test subject, the target gene consisting of S0X1, PAX1, LMX1A, NKX6-;! 'WT1 and 0NECUT1; and step 3 according to the target gene methyl Whether or not the specimen has cervical cancer and precancerous lesions is determined by the presence or absence of the state. The test subject is a Pap smear, blood, urine, cervical epithelial cells, and the like. The test subject is an abnormal Pap smear. Among them, the test specimen was a cervical cancer cell which was positive for PV testing by human papillomavirus (0〇3). The methylation status of the CpG sequence of the target gene is methylation-specific PCR (MSP), quantitative methylation-specific PCR (QMSP) ) 'bisulfite sequencing (BS), microarrays, mass spectrometry, denaturing high-performanee liquid ehr_tography (DHPLC). It is claimed that the target gene S0X1 has a nucleotide sequence β as shown in SEQ ID No: 其中, wherein the target gene ΡΑΧ 1 has a nucleotide sequence as shown in SEQ ID No: 2, wherein the target gene LMX1A has SEQ! The nucleotide sequence β shown by dNo: 3 wherein the target gene ΝΚΧ 6-1 has the nucleotide sequence as shown in SEQ ID No. 4. Wherein the target gene WT1 has a nucleotide sequence as shown in SEQ ID NO: 5. Ϊ329743 wherein the target gene 0NECUT1 has a nucleotide sequence β as shown in SEQ ID NO: 6. The present invention further provides a method for screening for ovarian cancer by detecting the state of target soil thiolation in the test subject cells. As a screening target for the presence or absence of a nested cancer, the method comprises the following steps: Step 1 provides a test subject; Step 2 detects a CpG sequence methylation status of at least one target gene in the genomic DNA of the test subject The target gene consists of S〇xi, PAXi, and LMX1A; and step 3 determines whether the sample has ovarian cancer or precancerous lesions based on the presence or absence of the methylation status of the target gene. The test subject is ascites, blood, urine, and the like. The methylation status detection method of the CpG sequence of the target gene is methylation-specific polymerase chain reaction (MSP), quantitative methylation-specific PCR (QMSP) ), bisulfite sequencing (BS), microarrays, mass spectrometer, denaturing high-performance liquid chromatography (DHPLC), coke filling acid sequencing (pyrosequencing) wherein the target gene SOX1 has the nucleotide sequence shown as SEQ ID No: 1. Wherein the target gene PAX1 has the nucleotide sequence as shown in SEQ ID No. 2. Wherein the target gene LMX1A has a nucleotide sequence as shown in SEQDD No. 3. The present invention further provides a method for screening for liver cancer by detecting a state of methylation of a target gene in a test subject cell as a screening index for the presence or absence of liver cancer, the method comprising the following steps: Step 1 provides a test sample 1329743 Step 2 detecting the methylation status of cpG sequence of at least one target gene in the genomic DNA of the test subject 'The target gene is composed of SOX NKX6-1; and Step 3 according to the methylation status of the target gene Whether or not the sample has liver cancer and precancerous lesions. The test subject is ascites, blood, urine, feces, gastric juice, bile, and the like.

其中該目標基因的CpG序列甲基化狀態檢測方法為甲基化特異性聚合 酶連鎖反應(methylation-specific PCR,MSP)、定量甲基化特異性聚合酶連鎖 反應(quantitative methylation-specific PCR,QMSP)、亞硫酸鹽定序(bisulfite sequencing, BS)、微陣列(microarrays)、質譜儀分析(mass spectrometer)、變 性间效液相色譜(denaturing high-performance liquid chromatography, * < DHPLC)、焦填酸定序(pyrosequencing)。 其中該目標基因S0X1係具有如SEQ ID No: 1所示之核苷酸序列》 其中該目標基因NKX6-1係具有如SEQIDNo: 4所示之核苷酸序列。 • 【實施方式】 實施例一材料與方法 一、試驗材料 試驗材料包含一系列完整的子宮頸病變樣本,包括正常樣本(η = 45)、 低度鱗狀細胞上皮内病變(LSIL,n = 45)、高度鱗狀細胞上皮内病變(HSIL,n =58)、鱗狀細胞癌(squamous cell carcinoma,SCC,η = 109);試驗材料另包含 一系列完整的卵巢腫瘤樣本’包括卵巢良性腫瘤樣本(η = 36)、卵巢邊緣性 腫瘤樣本(η = 6)、卵巢惡性腫瘤樣本(η= 122);所有的子宮頸樣本及卵巢樣 12 本均取自台北三軍總醫院的婦科腫瘤組織庫’各樣本的基因組DNA以 Qiagene DNA套組抽取,並以Pic〇Green螢光吸收法定量DNA,且以凝膠 電泳檢測DNA的品質。 另外,肝細胞樣本則包含正常肝細胞樣本(η =13)、慢性肝炎(n=15)、 肝硬化(cirrhosis, η = 40)、肝癌(hepatocellular carcinoma, HCC,η = 54);所有 的肝細胞樣本均取自台北三軍總醫院一般外科腫瘤組織庫,各肝細胞樣本 的基因組DNA也是以Qiagene DNA套組抽取’並以PicoGreen螢光吸收法 定量DNA,且以凝膠電泳檢測DNA的品質。 二、使用CpG島微陣列(CpG island microarrays)進行差異曱基化雜合反應 (Differential Methylation Hybridization, DMH) 取30個子宮頸癌組織樣本的DNA混合在一起,另外取i〇個正常子宮 頸抹片樣本的DNA混合在一起,樣本的DNA以限制酶酶切後,黏接 (ligated)到連接子(linkers)上,隨後以對甲基化敏感之限制酶 (methylation-sensitive restriction enzymes) ΖζσαΠ 以及及/Ul 進行酶句,再將 該DNA作為PCR的模版(template)進行20個循環(cycles)的擴增,並以營光 染劑標記,正常子宮頸抹片樣本的DNA以螢光染劑Cy3標記,子宮頸癌組 織樣本的DNA則以螢光染劑Cy5標記;將標記好的樣本DNA作為探針, 與含有 8,640 CpG 島標籤(CpG island tags)的 CpG 島微陣列(CpG island microarrays)進行雜交反應,以 CGI 資料庫(網址: http://derlab.med.utoronto.ca/CpGIslands/)來辨識被挑選到的 CpG 島。微陣列 數據以GenePix 6.0軟體的圓形特徵模式(circular-features mode)分析,標記 重複挑選的選殖株(clone),以及過濾去除掉不被接受的特徵;Cy5對Cy3 的比率(ratio)大於2.0的基因位(loci)為在混合的子宮頸癌組織樣本中具有高 13 • •二. ·. · .... · · ....... ·........ . 1329743 度甲基化的基因,因此接受比率大於2.0的基因位。 三、亞硫酸里修飾作用(Bisu丨fite modification)、甲基化特異性聚合酶連領 反應(methybticm-specifk PCR,MSP)以及亞硫酸鹽定序(bisulflte sequencing, BS) 使用Chemicon公司出產之DNA修飾套組(DNA m〇dificati〇n咏 Chemicon,Temecula,CA)進行亞硫酸鹽修飾作用:取1 gg樣本的基因組dn人 • (genomic DNA)’以亞硫酸鈉對基因組DNA進行化學修飾,在單鏈DNA中, ^ 所有非〒基化的胞嘴咬都會發生脫氨基作用而轉變成尿痛咬,而甲基化的 胞嘴咬則不被修飾’仍保持5-甲基胞鳴咬的狀態;最後,將反應後的樣本 DNA溶於70μΙ 55°C的ΊΈ緩衝液(TE buffer)中,以進行甲基化特異性pcr (MSP) 〇 另取人類周圍血(peripheral blood)的正常DNA進行亞硫酸鹽修飾作 - 用’以作為具有非甲基化啟動子序列的對照組;並將人類的正常DNA以The methylation status of the CpG sequence of the target gene is methylation-specific PCR (MSP), quantitative methylation-specific PCR (QMSP) ), bisulfite sequencing (BS), microarrays, mass spectrometer, denaturing high-performance liquid chromatography (*) (DHPLC), coke filling Acid pyrosequencing. Wherein the target gene S0X1 has a nucleotide sequence as shown in SEQ ID No: 1 wherein the target gene NKX6-1 has the nucleotide sequence as shown in SEQ ID No. 4. • [Embodiment] Example 1 Materials and Methods 1. Test Materials The test materials contained a series of complete cervical lesion samples, including normal samples (η = 45), low-grade squamous cell intraepithelial lesions (LSIL, n = 45). Highly squamous cell intraepithelial lesion (HSIL, n = 58), squamous cell carcinoma (SCC, η = 109); the test material additionally contains a series of complete ovarian tumor samples 'including ovarian benign tumor samples (η = 36), ovarian marginal tumor samples (η = 6), ovarian malignant tumor samples (η = 122); all cervical samples and ovarian-like 12 samples were taken from the gynecological tumor tissue bank of the Taipei Military Academy General Hospital' The genomic DNA of each sample was extracted with Qiagen DNA kit, and DNA was quantified by Pic〇Green fluorescence absorption method, and the quality of DNA was detected by gel electrophoresis. In addition, hepatocyte samples contained normal liver cell samples (η = 13), chronic hepatitis (n = 15), cirrhosis (n = 40), liver cancer (hepatocellular carcinoma, HCC, η = 54); all livers The cell samples were taken from the general surgical tumor tissue bank of the Taipei Three Military General Hospital. The genomic DNA of each liver cell sample was also extracted with the Qiagen DNA kit and the DNA was quantified by PicoGreen fluorescence absorption method, and the DNA quality was detected by gel electrophoresis. 2. Differential Methylation Hybridization (DMH) using CpG island microarrays (DMH) Take DNA from 30 cervical cancer tissue samples and mix them together, and take a normal Pap smear. The DNA of the sample is mixed together, and the DNA of the sample is digested with restriction enzymes, ligated to linkers, followed by methylation-sensitive restriction enzymes ΖζσαΠ and /Ul Enzyme sentence, then the DNA is used as a template for PCR for 20 cycles of amplification, and labeled with camp light dye, the DNA of normal Pap smear sample is fluorescent dye Cy3 Marked, the DNA of the cervical cancer tissue sample was labeled with the fluorescent dye Cy5; the labeled sample DNA was used as a probe, and the CpG island microarrays containing the 8,640 CpG island tags (CpG island microarrays) were used. Hybridization reactions were identified using the CGI database (http://derlab.med.utoronto.ca/CpGIslands/) to identify selected CpG islands. The microarray data was analyzed in the circular-features mode of the GenePix 6.0 software, marking the repeatedly selected clones, and filtering to remove unacceptable features; the ratio of Cy5 to Cy3 was greater than The loci of 2.0 is high in mixed cervical cancer tissue samples. • • 2. · · · · · · · . . . . . . 1329743 degrees of methylated gene, thus accepting a gene with a ratio greater than 2.0. 3. Bisu丨fite modification, methylation-specific polymerase reaction (MSP) and sulfite sequencing (BS) using Chemicon Modification kit (DNA m〇dificati〇n咏Chemicon, Temecula, CA) for sulfite modification: genomic DNA of 1 gg sample • (genomic DNA)' chemical modification of genomic DNA with sodium sulfite in single-stranded In DNA, ^ all non-thiolated beetles will undergo deamination and turn into urinary pain bites, while methylated punctures will not be modified 'still maintaining a 5-methyl cellulite bite; Finally, the reacted sample DNA was dissolved in 70 μL of 55 ° C in TE buffer to perform methylation-specific PCR (MSP) and normal DNA of human peripheral blood. Sulfate modification - using 'as a control group with a non-methylated promoter sequence; and human normal DNA

SssI 甲基轉移酶(methyltransferase,New England Biolabs,Beverly, MA)處 理’以得到具有甲基化對偶基因的陽性對照組。 _ 取bg經過亞硫酸鹽修飾作用後的樣本基因組DNA,以及對照組和陽 * 性對照組DNA,以MSP引子進行甲基化特異性PCR擴增,該MSP引子分 - 為兩種’一種為可專一辨認非甲基化基因序列的MSP引子(U),另一種為可 專一辨認甲基化基因序列的MSP引子(M),各目標基因的MSP引子序列如 表一所示;甲基化特異性PCR反應物的總體積為25μ1,包含Ιμΐ已修飾過 的拉版 DNA、每一引子各 1·5 pmol、0.2 mmol/L dNTPs 以及 1 unit Gold 沿夺 DNA polymerase (Applied Biosystems,Foster City, CA);將混合好的反應物置 於95°C下5分鐘,接著以95°C解離(denature) 30秒、適當引子黏合(annealing) 14 Ϊ329743 溫度黏合30秒、72°C合成30秒為循環,解離、黏合、合成步驟共重複35 個循環,之後再置於72°C反應5分鐘。擴增後的產物以含有溴化乙錠 (ethidium bromide, EtBr)的2.5%壤脂膠截進行電泳分析,並置於紫外光下照 射觀察。SssI methyltransferase (methyltransferase, New England Biolabs, Beverly, MA) was treated to obtain a positive control group with a methylated dual gene. _ Take the genomic DNA of bg after sulfite modification, and the DNA of the control group and the control group, and perform methylation-specific PCR amplification with MSP primer. The MSP primer is divided into two types. The MSP primer (U) can specifically recognize the unmethylated gene sequence, and the other is the MSP primer (M) which can specifically recognize the methylation gene sequence. The MSP primer sequence of each target gene is shown in Table 1; methylation The total volume of the specific PCR reaction was 25 μl, including Ιμΐ modified plasmid DNA, each primer was 1.5 μm, 0.2 mmol/L dNTPs, and 1 unit Gold DNA polymerase (Applied Biosystems, Foster City, CA); The mixed reactants were placed at 95 ° C for 5 minutes, followed by dissociation at 95 ° C for 30 seconds, appropriate primer bonding 14 Ϊ 329743 temperature bonding for 30 seconds, 72 ° C synthesis for 30 seconds for the cycle The dissociation, bonding, and synthesis steps were repeated for a total of 35 cycles, followed by a reaction at 72 ° C for 5 minutes. The amplified product was electrophoresed and analyzed by 2.5% phospholipid interception containing ethidium bromide (EtBr) and observed under ultraviolet light.

表一甲基化特異性PCR (MSP)所使用之MSP引子的序列 基因名稱 引子種類 引子序列 Μ 正股(F') 5, CGTTTTTTTTTTTTCGTTATTGGC 3r (SEQ ID No: 7) SOX1 反股(R') 5, CCTACGCTCGATCCTCAACG 3r (SEQIDNo: 8) U 正股(F) 5, TGTTTTTTTTTTTTTGTTATTGGTG 3f (SEQ ED No: 9) 反股(R’) 5, CCTACACTCAATCCTCAACAAC 3' (SEQ ID No: 10) Μ 正股(F) 5, TTTAGAAGCGGGCGGGAC 3' (SEQ ID No: 11) LMX1A 反股(R〇 5, CCGAATCCAAACACGCG 3, (SEQ ED No: 12) υ 正股(F) 5, GAGTTTAGAAGTGGGTGGGATG 3f (SEQ ID No: 13) 反股(R〇 5f CAACCAAATCCAAACACACAAAAC 3' (SEQ ID No: 14) Μ 正股(F) 5, TTGTAGCGGCGGTTTTAGGTC (SEQ ID No: 15) ONECUT1 反股(R') 5, GCCAAACCCTTAACGTCCCG 3' (SEQ ED No: 16) U 正股(F,) 5, GATTGTAGTGGTGGTTTTAGGTTG 3' (SEQ ID No: 17) 反股(R,) 5f caccaaacccttaacAtcccaatac V (SEQ ID No: 18) Μ 正股(F) 5, TATTTTGGGTTTGGGGTCGC 3' (SEQ ID No: 19) D A V1 反股(Ι〇 5f CCCGAAAACCGAAAACCG 3' (SEQ ID No: 20) rAAl U 正股(F) 5f GTTTATTTTGGGTTTGGGGTTGTG 1' (SEQ ID No: 21) 反股(R》 5, CACCCAAAAACCAAAAACCAC 3r (SEQ ID No: 22) Μ 正股(F') 5f CGTGGTCGTGGGATGTTAGC 3' (SEQ ID No: 23) NKX6.1 反股(R〇 5, ACAAACAACGAAAAATACGCG 3, (SEQ ID No: 24) υ 正股(F) 5, GTGTGGTTGTGGGATGTTAGTG 3' (SEQ ID No: 25) 反股 5f CAACAAACAACAAAAAATACACAAC 3' (SEQ ID No: 26) Μ 正股(F) 5, TGTTGAGTGAATGGAGCGGTC 2' (SEQ ID No: 27) WT1 反股(R·) 5, CGAAAAACCCCCGAATATAAACG 3, (SEQ ID No: 28) υ 正股(F) 5, GTTGTTGAGTGAATGGAGTGGTTG 3' (SEQ ID No: 29) 反股(R) 5, AATTACAAAAAACCCCCAAATATAAACAC 3,(SEQ ID No: 30) 引子種類Μ代表可專一辨認甲基化基因序列的MSP引子》 引子種類ϋ代表可專一辨認非甲基化基因序列的MSP引子。 15 Ϊ329743 所有的樣本均進行至少兩次獨立的亞硫酸鹽修飾作用及甲基化特異性 PCR ’在使用可專一辨認甲基化基因序列的MSP引子(的所進行的pcR反 應中’若同一樣本無法合成出PCR產物兩次以上,則視為該樣本不具甲基 化;將使用可專一辨認甲基化基因序列的MSP引子(M)所擴增之PCR產物 選殖到PCR4-T0P0載體(Invitrogen,Carlsbad,CA)中’選取至少5個獨立的 選殖株(clones)進行亞硫酸鹽定序(BS) ’亞硫酸鹽定序(bs)所使用的引子如 表二所示,使用377自動定序儀(Applied Biosystems,Foster City, CA)進行亞 硫酸鹽定序" 表二亞硫酸鹽定序(BS)所使用之引子的序列 基因名稱 S0X1Table 1 Methylation-specific PCR (MSP) MSP primer sequence gene name primer type primer sequence Μ positive stock (F') 5, CGTTTTTTTTTTTTCGTTATTGGC 3r (SEQ ID No: 7) SOX1 anti-share (R') 5 , CCTACGCTCGATCCTCAACG 3r (SEQ ID No: 8) U Positive Strand (F) 5, TGTTTTTTTTTTTTTGTTATTGGTG 3f (SEQ ED No: 9) Anti-Rand (R') 5, CCTACACTCAATCCTCAACAAC 3' (SEQ ID No: 10) Μ 股股(F) 5 , TTTAGAAGCGGGCGGGAC 3' (SEQ ID No: 11) LMX1A anti-strand (R〇5, CCGAATCCAAACACGCG 3, (SEQ ED No: 12) υ 股 (F) 5, GAGTTTAGAAGTGGGTGGGATG 3f (SEQ ID No: 13) Anti-share (R 〇5f CAACCAAATCCAAACACACAAAAC 3' (SEQ ID No: 14) Μ 股 股 (F) 5, TTGTAGCGGCGGTTTTAGGTC (SEQ ID No: 15) ONECUT1 Anti-Stock (R') 5, GCCAAACCCTTAACGTCCCG 3' (SEQ ED No: 16) U (F,) 5, GATTGTAGTGGTGGTTTTAGGTTG 3' (SEQ ID No: 17) Anti-strand (R,) 5f caccaaacccttaacAtcccaatac V (SEQ ID No: 18) Μ 股 (F) 5, TATTTTGGGTTTGGGGTCGC 3' (SEQ ID No: 19) DA V1 anti-share (Ι〇5f CCCGAAAACCGAAAACCG 3' (SEQ ID No: 20) rAAl U positive stock (F) 5f GTTTATTTTGGGTTTGGGGTTGTG 1' (SEQ ID No: 21) Inversion (R) 5, CACCCAAAAACCAAAAACCAC 3r (SEQ ID No: 22) Μ 股 股 (F') 5f CGTGGTCGTGGGATGTTAGC 3' (SEQ ID No: 23) NKX6.1 Anti-Shares (R〇5 , ACAAACAACGAAAAATACGCG 3, (SEQ ID No: 24) υ 股 股 (F) 5, GTGTGGTTGTGGGATGTTAGTG 3' (SEQ ID No: 25) Antifungal 5f CAACAAACAACAAAAAATACACAAC 3' (SEQ ID No: 26) Μ 股 ( (F) 5, TGTTGAGTGAATGGAGCGGTC 2' (SEQ ID No: 27) WT1 anti-strand (R·) 5, CGAAAAACCCCCGAATATAAACG 3, (SEQ ID No: 28) υ 股 (F) 5, GTTGTTGAGTGAATGGAGTGGTTG 3' (SEQ ID No: 29) R) 5, AATTACAAAAAACCCCCAAATATAAACAC 3, (SEQ ID No: 30) The primer type Μ represents the MSP primer that can specifically recognize the methylation gene sequence. The primer type ϋ represents the MSP primer that can specifically recognize the unmethylated gene sequence. 15 Ϊ329743 All samples were subjected to at least two independent sulfite modification and methylation-specific PCR 'in the same sample using the MSP primer that can specifically recognize the methylation gene sequence (in the pcR reaction performed) If the PCR product cannot be synthesized more than twice, the sample is considered to be unmethylated; the PCR product amplified by the MSP primer (M) which specifically recognizes the methylation gene sequence is selected into the PCR4-T0P0 vector (Invitrogen) , Carlsbad, CA) 'Select at least 5 independent clones for sulfite sequencing (BS) 'The sulfite sequencing (bs) used in the primers shown in Table 2, using 377 automatically Sequencer (Applied Biosystems, Foster City, CA) for sulfite sequencing " Table II sulfite sequencing (BS) used in the sequence name of the primer S0X1

LMX1A 0NECUT1 引子種類 引子序列 正股(F’)5,· GTTGTTTTYGGGTTTTTTTTTGGTTG 3, (SEQ ID No: 31) 反股(R1) 5, A-TTTCTCCTAATACACAAACCACTTACC 3f (SEQ ED No: 32) 正股(F') 5,TAGTTATTGGGAGAGAGTTYGTTTATTAG 3f (SEQ ED No: 33) 反股(R1) 5, CTACCCCAAATCRAAAAAAAACAC 3,_(SEQ ID No: 34) 正股(F) 5,GAGTTTATTTAAGTAAGGGAGG 3f (SEQ ID No: 35) 反股(R1) 5,CAACTTAAACCATAACTCTATTACTATTAC 3,(SEQ ID No: 36)LMX1A 0NECUT1 primer type primer sequence positive stock (F') 5, · GTTGTTTTYGGGTTTTTTTTTGGTTG 3, (SEQ ID No: 31) anti-strand (R1) 5, A-TTTCTCCTAATACACAAACCACTTACC 3f (SEQ ED No: 32) positive stock (F') 5 ,TAGTTATTGGGAGAGAGTTYGTTTATTAG 3f (SEQ ED No: 33) anti-strand (R1) 5, CTACCCCAAATCRAAAAAAAACAC 3,_(SEQ ID No: 34) positive (F) 5, GAGTTTATTTAAGTAAGGGAGG 3f (SEQ ID No: 35) anti-share (R1) 5 , CAACTTAAACCATAACTCTATTACTATTAC 3, (SEQ ID No: 36)

PAX1 正股(F) V GTGTTTTGGGAGGGGGTAGTAG 3f BS1 反股(R') 5f CCCTCCCRAACCCTACCTATC 3f 正股(F,)5,GATAGAAGGAGGGGGTAGAGTT 3, BS2 反股(R·) 5,TACTACCCCCTCCCAAAACAC 3, NKX6.1 WT1PAX1 Stock (F) V GTGTTTTGGGAGGGGGTAGTAG 3f BS1 Anti-Stock (R') 5f CCCTCCCRAACCCTACCTATC 3f Stock (F,) 5, GATAGAAGGAGGGGGTAGAGTT 3, BS2 Anti-Stock (R·) 5, TACTACCCCCTCCCAAAACAC 3, NKX6.1 WT1

正股(F1) 5f GGTATTTTTGGTTTAGTTGGTAGTT 3' BS1 反股(R1) 5,AATACCCTCCATTACCCCCACC 3f 正股(F) 5’ GGTGGGGGTAATGGAGGGTATT 3' BS2 ,, 反股(R1) 5,CCTAAATTATAAATACCCAAAAAC 3, 正股(F') 5,GTGTTGGGTTGAAGAGGAGGGTGT 3' 反股(R1) 5, ATCCTACAACAAAAAAAAATCCAAAATC (SEQ ID No: 37) (SEQ ID No: 38) (SEQ ID No: 39) (SEQ ID No: 40) (SEQ ID No: 41) (SEQ ID No: 42) (SEQ ID No: 43) (SEQ ID No: 44) (SEQ ID No: 45) 3’ (SEQ ID No; 46) 四、經由5,-雜氮-2,-脫氧胞苷(5’-aza-2’-deoxycytidine)處理’使甲基化基因 在子宮頸癌細胞株内再表現 16 1329743 首先在HeLa子宮頸癌細胞株中,以甲基化特異性PCR (MSP)測試可能 具有高度甲基化的基因之甲基化狀態,並選出具有甲基化的基因。再將 子宮頸癌細胞株以10 μΜ的DNA甲基轉移酶抑制劑 5’-aza-2’-deoxyCytidine (SigmaChemical Co.)處理 4 天’使細胞株中原本因甲 基化而不表現的基因可重新表現,並以RT_PCR分析基因的表現;使用Stock (F1) 5f GGTATTTTTGGTTTAGTTGGTAGTT 3' BS1 Anti-Stock (R1) 5, AATACCCTCCATTACCCCCACC 3f Stock (F) 5' GGTGGGGGTAATGGAGGGTATT 3' BS2 ,, Anti-Stock (R1) 5, CCTAAATTATAAATACCCAAAAAC 3, Stock (F') 5, GTGTTGGGTTGAAGAGGAGGGTGT 3' anti-strand (R1) 5, ATCCTACAACAAAAAAAAATCCAAAATC (SEQ ID No: 37) (SEQ ID No: 38) (SEQ ID No: 39) (SEQ ID No: 40) (SEQ ID No: 41) (SEQ ID No: SEQ ID No. : 42) (SEQ ID No: 43) (SEQ ID No: 44) (SEQ ID No: 45) 3' (SEQ ID No; 46) IV, via 5,-aza-2,-deoxycytidine (5 '-aza-2'-deoxycytidine) treatment's re-expression of methylation genes in cervical cancer cell lines 16 1329743 First in the HeLa cervical cancer cell line, methylation-specific PCR (MSP) testing may have The methylation status of highly methylated genes and the selection of genes with methylation. The cervical cancer cell line was treated with 10 μM DNA methyltransferase inhibitor 5'-aza-2'-deoxyCytidine (Sigma Chemical Co.) for 4 days to make the cell strain not originally expressed by methylation. Re-exhibition and analysis of gene expression by RT_PCR; use

Qiagen RNeasy kit (Qiagen, Valencia, CA)抽取總 RNA (total RNA),並加入 DNase I以去除掉DNA的污染:每一樣本取1 pg total RNA以Superscript Π • 反轉錄酶(reverse transcriptase)及6鹼基隨機引物(random hexamer)(Invitrogen)進行 cDNA 合成;合成的 cDNA 以 PCR master mix reagents kit (Applied Biosystems)進行PCR擴增,並置於溫度循環反應器 (thermal cycler,GeneAmp 2400 PE,Applied Biosystems)中反應,擴增後的 • cDNA再以RT-PCR分析基因的表現,各目標基因所使用的RT-PCR引子如 表三所示。 表三RT-PCR所使用之MSP引子的序列Qiagen RNeasy kit (Qiagen, Valencia, CA) extracts total RNA (total RNA) and adds DNase I to remove DNA contamination: 1 pg total RNA per sample is Superscript Π • reverse transcriptase and 6 The cDNA random synthesis was performed by random hexamer (Invitrogen); the synthesized cDNA was PCR amplified by PCR master mix reagents kit (Applied Biosystems) and placed in a thermocycler (GeneAmp 2400 PE, Applied Biosystems). In the middle reaction, the amplified cDNA was analyzed by RT-PCR, and the RT-PCR primers used for each target gene are shown in Table 3. Table 3 Sequence of MSP primers used in RT-PCR

基因名稱 引子種類 引子序列 SOX1 正股(F,) 5, AGACCTAGATGCCAACAATTGG 3, (SEQ ID No: 47) 反股(R,) 5, GCACCACTACGACTTAGTCCG 3' (SE〇 ID No: 48) LMX1A 正股(F) 5, GCTGCTTCTGCTGCTGTGTCT 3r (SEQ ID No: 49) 反股(R〇 5, ACGTTTGGGGCGCTTATGGTC 31 (SEQ ED No: 50) ONECUT1 正股(F') 5, CAAACCCTGGAGCAAACTCAA 3' (SEQ ID No: 51) 反股(R1) 5, TGTGTTGCCTCTATCCTTCCC (SEQ ED No: 52) PAX1 正股(F·) 5, CCTACGCTGCCCTACAACCACATC 37 (SEQ ID No: 53) 反股(ϊ〇 5, TCACGCCGGCCCAGTCTTCCATCT 3r fSEOIDNo: 54) NKX6.1 正股(F) 5, CACACGAGACCCACTTTTTCC 3f (SEQ ID No: 55) 反股(R) 5; CCCAACGAATAGGCCAAACG 3f (SEQ ID No: 56) WT1 正股(F) 5, GCTGTCCCACTTACAGATGCA 3' (SEQ ID No: 57) 反股(R|) 5, TCAAAGCGCCAGCTGGAGTTT 31 (SEQ ID No: 58) 17 .·· J·.- *···—··*·. *4··* · 1329743 五、 人類乳突病毒(HPV)的偵測 以LI consensus PCR及反向線點雜交技術(reverse line blot)偵測鱗狀細 胞癌(SCC)中是否有人類乳突病毒(HPV)DNA的出現,若有超過該雜交技術 分析範圍的結果,則以DNA定序確認新型人類乳突病毒(novel HPV type) 之序列。 六、 統計分析 以統計軟體SAS version 9.1進行數據分析,基因的甲基化與各臨床參 φ 數(包括HPV狀態)之間的關係,係使用夕測試(f test)及費雪氏準確檢定 (Fisher’s exact test)計算,並以羅吉斯迴歸模型(logistic regression model)計算 並調整年齡與HPV感染的勝算比(Odds ratios, ORs)以及95%信賴區間 (confidence intervals,CI),統計的顯著水準(the alpha level of statistical - ^ significance)訂為= 0.05 ;並計算使用HPV及甲基化標記(markers)以診斷 子宮頸病變的靈敏度(sensitivity)及專一性(specificity)。 實施例二子宮頸癌甲基化指標基因之篩選 藉由CpG島微陣列(CpG. island microarrays)進行差異甲基化雜合反應 (DMH),以篩選出在子宮頸鱗狀細胞癌(SCC)内具有高度甲基化之基因; CpG島微陣列(CpG island microarrays)結果顯示,子宮頸癌組織樣本與正常 子宮頸抹片樣本之間,共有216個點具有差異性甲基化,去除掉序列重複 者之後’得到26個基因啟動子區域CpG島(promoter CGIs)。 針對這些基因啟動子進行定序及分析,並挑選出6個基因,這些基因 包含:S0X1(SEQ ID No: 1)、PAX1(SEQ ID No: 2)、LMX1A(SEQ ID No: 3)、 NKX6-1(SEQ ID No: 4)、WT1(SEQ ID No: 5)以及 〇NECUTl(SEQ 辽)No: 18 ·. ·· ···二,二ν···ί. ,····Λ 1329743 6),其詳細資料如表四所示;由表四可知,這六個基因都是在發育過程中重 要的轉錄因子(transcription factors) , s〇xl、ρΑχι、LMX1A、順6 卜 WT1分別對大腦、神經版(roofplate)、四肢、姨島以及泌尿生殖器的發育很 重要’ 0NECUT1對肝臟及胰臟基因的表現很重要,但目前卻报少有研究顯 示這些基因與癌症的關連。 表四以CpG島微陣列辨識出子宮頸癌細胞中具甲基化的基因之詳細資料 w m A UniGene 已知之基因功能 编號 S0X1 NM_005986 13q34 基因名稱 染色體定位 基因全名Gene Name Primer Type Primer Sequence SOX1 Positive Strand (F,) 5, AGACCTAGATGCCAACAATTGG 3, (SEQ ID No: 47) Anti-Stock (R,) 5, GCACCACTACGACTTAGTCCG 3' (SE〇ID No: 48) LMX1A Stock (F) 5, GCTGCTTCTGCTGCTGTGTCT 3r (SEQ ID No: 49) anti-strand (R〇5, ACGTTTGGGGCGCTTATGGTC 31 (SEQ ED No: 50) ONECUT1 positive stock (F') 5, CAAACCCTGGAGCAAACTCAA 3' (SEQ ID No: 51) anti-share (R1 5, TGTGTTGCCTCTATCCTTCCC (SEQ ED No: 52) PAX1 positive (F·) 5, CCTACGCTGCCCTACAACCACATC 37 (SEQ ID No: 53) Anti-shares (ϊ〇5, TCACGCCGGCCCAGTCTTCCATCT 3r fSEOIDNo: 54) NKX6.1 Stocks (F) 5, CACACGAGACCCACTTTTTCC 3f (SEQ ID No: 55) anti-strand (R) 5; CCCAACGAATAGGCCAAACG 3f (SEQ ID No: 56) WT1 positive (F) 5, GCTGTCCCACTTACAGATGCA 3' (SEQ ID No: 57) anti-share (R| 5, TCAAAGCGCCAGCTGGAGTTT 31 (SEQ ID No: 58) 17 .·· J·.- *······*·. *4··* · 1329743 5. Detection of human papillomavirus (HPV) Detection of human papillomavirus (HPV) DNA in squamous cell carcinoma (SCC) by LI consensus PCR and reverse line blot Exceeding the results of the analysis of the hybridization technique, the sequence of the novel human papillomavirus (novel HPV type) was confirmed by DNA sequencing. VI. Statistical analysis Data analysis by statistical software SAS version 9.1, gene methylation and clinical The relationship between the φ number (including the HPV state) is calculated using the f test and Fisher's exact test, and the age is calculated and adjusted by the logistic regression model. The odds ratio (ORds) with HPV infection and the 95% confidence interval (CI), the alpha level of statistical - ^ significance is set to = 0.05; and the calculation uses HPV and methyl Markers are used to diagnose the sensitivity and specificity of cervical lesions. Example 2 Screening of cervical cancer methylation index genes Screening for differential methylation hybridization (DMH) by CpG. island microarrays to screen out cervical squamous cell carcinoma (SCC) The gene with high methylation; CpG island microarrays showed that there were 216 points between the cervical cancer tissue sample and the normal Pap smear sample with differential methylation, and the sequence repeat was removed. After that, '26 gene promoter regions CpG islands (promoter CGIs) were obtained. These gene promoters were sequenced and analyzed, and six genes were selected, including: S0X1 (SEQ ID No: 1), PAX1 (SEQ ID No: 2), LMX1A (SEQ ID No: 3), NKX6. -1 (SEQ ID No: 4), WT1 (SEQ ID No: 5), and 〇NECUTl (SEQ Liao) No: 18 ···················································· 1329743 6), the detailed information is shown in Table 4; as shown in Table 4, these six genes are important transcription factors in the development process, s〇xl, ρΑχι, LMX1A, Shun 6 WT1 respectively It is important for the development of the brain, the roofplate, the extremities, the scorpion and the genitourinary tract. 0NECUT1 is important for the performance of liver and pancreatic genes, but few studies have reported that these genes are involved in cancer. Table 4 identifies the methylated genes in cervical cancer cells using CpG island microarrays. w m A UniGene Known gene function No. S0X1 NM_005986 13q34 Gene name Chromosome localization Gene full name

Sex determining DNA binding region Y-box 1 Transcription factor activity PAX1 ] >4M_006192 20pll.2 Paired box gene 1 DNA binding LMX1A 1 SfM_l 77398 Iq22-q23 LIM homeobox transcription factor 1 alpha Transcription factor activity Zinc ion binding NKX6-1 1 νίΜ_006168 4q21.2-q22 NK6 transcription factor related locus 1 Transcription factor activity ONECUT1 ϊ ^_004498 15q21.1-q21.2 One cut domain family member 1 Transcription factor activity Transcriptional activator activity WT1 1 似 一 024426 11ρ13 Wilm’s tumor 1 Transcription factor activity Zinc ion binding 針對上述各基因轉錄起始點(+1)前後各約500 bp核苷酸進行CpG序列 分析’如圖一所示,各基因中具有CpG序列者以「|」標示,並針對各基 因設計其MSP引子(如表一所示)及亞硫酸鹽定序(BS)引子(如表二所示),各 目標基因進行甲基化特異性PCR (MSP)以及亞硫酸鹽定序(BS)所合成的片 段位置也標示在圖一中。 接著對混合的子宮__樣本(3G _核合谈混合的正常子宮頸 抹片樣本00個樣本混合)進行甲基化特異性PCR (MSP),以相這6個基 因的甲基化現象在不同的_樣本_是否具有差異,結果如圖二所示,這6 個基因在混合的子宮職_樣本中轉在甲基化現象(㈣二第2棚所 外而在混合的正常子宮頸抹片樣本中則沒有〒基化現象(如圖工約搁所 二)進m固別的子呂頸癌組織樣本進行測試取4個子宮頸癌組織樣 :本(m T3、取4個正常樣本⑽、N2、N3、N4)進行f基化特異性 .籲R (MSP)刀別以可專一辨認非甲基化基因序列的MSP引子(U),以及可 專-辨認?基化基因序觸MSP引子⑽進行f基化特異性pcR师^, 結果如圖三所示,此六個基因在個別的子宮頸癌組織樣本中均具有甲基化 .現象(如圖三第卜3、5、7欄所示)/而同樣的基因在正常樣本中則侧不 到曱基化現象的發生(如圖三第9、U、13、15攔所示);根據上述結果,將 此6個基因作為篩檢子宮頸癌之甲基化指標基因。 •實施例三子宮頸癌細胞株内DNA甲基化與基因表現的相關性 為了確認子宮頸癌f基化指標基因的表現是否透過DNA f基化作用 來調節,以10 μΜ的DNA甲基轉移醇抑制劑5,-aza-2,-de〇xycytidine (AZC) (Sigma Chemical Co·)處理HeLa子宮頸癌細胞株4天,再以甲基化特異性 PCR(MSP)檢查上述6個基因啟動子去甲基化的情況;分別以可專一辨認非 甲基化基因序列的MSP引子(U),以及可專一辨認曱基化基因序列的Msp 引子(Μ)進行曱基化特異性PCR (MSP),結果如圖四a所示,未處理 5’-aza-2’-deoxycytidine (AZC)之 HeLa 子宮頸癌細胞株(AZC-)中,6 個目標 基因均具有甲基化現象(如圖四A第1爛所示)’且>(貞測不到未甲基化的基因 20 (如圖四A第2欄所示);而在處理5’-aza-2’-deoxycytidine (AZC) 4天之HeLa 子宮頸癌細胞株(AZC+)中’則可偵測到未甲基化的目標基因(如圖四a第4 攔所示),顯示經過曱墓轉移酶抑制劑5’-aza-2’-deoxycytidine (AZC)處理後 的子宮頸癌細胞株中’上述6個目標基因均有部分已去除甲基化。 再以RT-PCR分析這6個基因在HeLa子宮頸癌細胞株中的表現,結果 如圖四B所示,經5’-aza-2’-deoxycytidine (AZC)處理後的細胞株中,均可 偵測到這6個目標基因的mRNA (如圖四b第6攔所示),而未經 5’-aza-2’-deoxycytidine(AZC)處理的細胞株中,則偵測不到任何一個目標基 因的mRNA (如圖四B第5欄所示)’由結果可知,這六個目標基因在子宮 頸癌細胞中,確實會經由DNA甲基化作用來調節其基因表現,當基因具有 甲基化現象時,基因的表埤會受到抑制,去除曱基化作用之後,目標基因 又會開始表現。 另以亞硫酸鹽疋序(BS)分析目標基因在HeLa子宮頸癌細胞株中是否存 在高度甲基化(hypermethylation)現象,結果如圖五所示,未經 5’-aza-2’-de〇xycytidine(AZC)處理的細胞株(圖五A)中,目標基因高度甲基 化的樣本數比腿S’-azaldeoxyeytidine (A2C)處理的_株(圖五B)要來 的多;同樣以亞硫酸鹽定序(BS)分析于宮頸鱗狀細胞癌(scc)及正常樣本, 結果則如圖六所示,在子宮頸鱗狀細胞癌(scc)(圖六A)樣本中,目標基因 咼度甲基化的樣本數也明顯較正常樣本(圖六B)來的多。 實施例四臨床子宮頸樣本内目標基因的甲基化分析 請參閱表五,正常樣本、低度鱗狀細胞上皮内病變①叫、高度鱗狀細 跑上皮内錢卿L)以及雜細财(scc)樣本的平均年齡分料 21 -..Λ,.·.·.,.. ·.·. 1329743 11·3'39·7±9.6、46·4± 14.4 以及 53.3± ι〇 9 歲(^7<0.05);樣本辛高危險 Hpv dna呈現陽性的比率各為:正常樣本214%,低度鱗狀細胞上皮内病變 (LSIL)樣本47.7% ’高度鱗狀細胞上皮内病變(HSIL)樣本59 3%,鱗狀細胞 癌(SCC)樣本88.9%。結果顯示,感染Hpv的病患較易罹患不同嚴重程度的 子宮頸病變(LSIL、HSIL、SCC樣本的勝算比各為3J、5,2、29.9 ; 95%信 賴區間各為 1.1-8.3、2.1-13.0、11.5-77.7)。 在不同嚴重程度的子宮頸病變樣本中,以甲基化特異性PCR (MSp)分 籲析目^基因的罗基化狀態,目標基因的甲基化狀態及人類乳突病毒(HPV) 的有無之分析結果如表五所示,SOX卜pax卜LMX1A、ΝΚΧ6·4、WT1 以及ONECUT1這6個基因在鱗狀細胞癌(SCC)中均具有高頻率甲基化現 象’各基因在鱗狀細胞癌(SCC)樣本中甲基化的比例分別為:8丨5%、94 4%、 89.9%、80.4%、77.8〇/〇以及20.4〇/〇 ;而在正常子宮頸樣本中各基因甲基化的 比例則分別為:2.2。/〇、〇%、6.7%、11.9%、11.1% 以及 〇% (p 〇〇1); 因此,與正常子宮頸樣本比較,這6個基因在鱗狀細胞癌(scc)樣本中被甲 基化的情況明顯高出許多。 B NKX6-1基因甲基化的頻率在LSIL樣本中為53 3%,在册正樣本中 為55.1%,在SCC樣本中則為80.4% ;統計結果顯示,具有基因 甲基化現象的病患罹患鱗狀細胞癌(scc)的風險較高(勝算比為29 8,95%信 賴區間為10.4-85.2)。 PAX1基因甲基化的頻率在LSIL樣本中為2.3%,在HSIL樣本中為 42.1/〇 ’在SCC樣本中則為94 4〇/〇 ;統計結果顯示,具有ρΑχι基因曱基化 現象的病患’罹患高度鱗狀細胞上皮内病變卿L)及鱗狀細胞癌(scc)的風 22 T329743 險較raj(HSIL以及see樣本的勝算比均為>999.9 ; 95%信賴區間為< 0_ 1->999.9)。 SOX1、LMX1A以及0NECUT1三個基因在癌前病變(prec咖咖出 lesions)的樣本十〒基化的頻率很低’但在η肌樣本及scc樣本中甲基化 的頻率則大幅增加,分別為9撕及81 s% '祕及89 9% ' 7 4〇/。及2〇爲; 統δ十結果顯不’具有s〇xl、LMX1A或〇necuti基因甲基化現象的病患, ,羅患鱗狀細胞癌(SCC)的風險較高(三者的勝算比分別為200.2、124 5、7 3 ; -· 95% 信賴區間分別為 25.8-999.9、33.G-47G]、2.0-25.9)。 WT1基因甲基化的頻率隨著病變嚴重程度增加而增加,在正常樣本中 wti基因甲基化的頻率為111%,在[证樣本中為2〇〇%,在卿匕樣本 中為42.1%,在SCC樣本肀則為77 8% ;統計結果顯示,具有基因曱 基化現象的病患,罹患高度鱗狀細胞上皮内病變(HSIL)及鱗狀細胞癌(scc) 的風險較南(兩者的勝算比分別為6 7、27 9 ; 95%信賴區間分別為2·219 8、 9.8-78.9) » DNA甲基化指標的診斷表現 分析DNA甲基化的靈敏度(sens出以及專一性,以決定 目標基因是否可作為高度子宮頸癌病變以及子宮頸癌篩檢的生物指標,分 析結果如表六所示;以HPV測試來篩檢樣本有無鱗狀細胞癌(SCC)的靈敏 度及專一性分別為83.1%以及85.5% (其95%信賴區間則分別為77.6-88.5以 及 79.6-91.4);而分析 SOX卜 PAX卜 LMX1A、NKX6-1 以及 WT1 這 5 個 基因的甲基化狀態以篩檢鱗狀細胞癌(SCC)的有無,各基因甲基化狀態對鱗 狀細胞癌(SCC)的靈敏度則為77.8%-94.4%,其專一性為88.1%·1〇〇%;當同 時合併HPV測試與個別甲基化指標基因來檢測疾病時(combined parallel 23 testing, CPT),意㈣要HPV職或任―?基化·基_職結果為陽 性,則認定該測試樣本的子宮頸癌篩檢結果為陽性,其靈敏度介於 97.2%-98.2。/〇,而專-‘时於66.7%·795%;當循序合併轉制 testing,CST) HPV測試與個別甲基化指標基因時,意即首先進行測 試,並對HPV測試呈陽性反應之樣本進行各指標基_甲基化狀縫測, 其靈敏度介於69_4%-85.0%,而所有測試的專一性均為1〇〇%。 當同時以高度鱗狀細胞上皮内病變卿L)以及鱗狀細胞癌(scc)診斷 標的時’以HPV測s式來篩檢樣本有無HSIL或SCC的靈敏度及專一性分別 為75.0%以及85.5% (其95%信賴區間則分別為7〇·2-79_8以及79.6-91.4); 而分析SOX卜PAX卜LMX1A、ΝΚΧ6-1以及WH這5個基因的曱基化 狀態以篩檢樣本有無HSIL或50::各基因甲基化狀態對1^1]^或8(:(:的 靈敏度則介於57·4%·76.2%,其專一性介於88.1%_100% ;當同時合併HpV 測試與個別甲基化指標基因來檢測疾病時(CPT),其靈敏度可增加到 85·8%-94.9% ;而當循序合併(CST) RPV測試與個別甲基化指標基因時, 所有測試的專一性均為100% ;當同時合併(CPT) HPV測試與s〇xl、 PAX卜LMX1A三個基因的甲基化狀態測試,以篩檢樣本有無鱗狀細胞癌 (SCC)時’其靈敏度可達1〇〇%,而以相同方法篩檢樣本中有無HSIL或SCC 時’其靈敏度則為93.4%。 在以個別曱基化指標基因篩檢鱗狀細胞癌(SCC)的結果中,以單獨檢測 PAX1基因甲基化狀態來篩檢樣本中有無鱗狀細胞癌(scc)的靈敏度為最 高’其靈敏度可達94.4% (其95%信賴區間為90.0-98.8),同樣的,以ραχϊ 基因甲基化狀態篩檢樣本中有無HSIL或SCC的靈敏度也可達到76.2% (其 95°/。信賴區間為69.7-82.7),而兩個測試的專一性則均為1〇〇%。 24 1329743Sex determining DNA binding region Y-box 1 Transcription factor activity PAX1 ] >4M_006192 20pll.2 Paired box gene 1 DNA binding LMX1A 1 SfM_l 77398 Iq22-q23 LIM homeobox transcription factor 1 alpha Transcription factor activity Zinc ion binding NKX6-1 1 νίΜ_006168 4q21.2-q22 NK6 transcription factor related locus 1 Transcription factor activity ONECUT1 ϊ ^_004498 15q21.1-q21.2 One cut domain family member 1 Transcription factor activity Transcriptional activator activity WT1 1 Like a 024426 11ρ13 Wilm's tumor 1 Transcription factor activity Zinc Ion binding CpG sequence analysis of about 500 bp nucleotides before and after the transcription start point (+1) of each gene is shown in Figure 1. The CpG sequence in each gene is indicated by "|" and is targeted for each gene. Design MSP primers (as shown in Table 1) and sulfite sequencing (BS) primers (as shown in Table 2), methylation-specific PCR (MSP) and sulfite sequencing (BS) The position of the synthesized fragment is also indicated in Figure 1. Methylation-specific PCR (MSP) was then performed on the mixed uterine __sample (3G _ 合 混合 mixed normal smear smear sample 00 samples), in order to methylation of these six genes Whether the different _samples have differences, the results shown in Figure 2, these 6 genes in the mixed uterus _ sample transfer in the methylation phenomenon ((4) two 2 shed outside the mixed normal cervical smear There is no thiolation phenomenon in the sample (as shown in Figure 2). The sample of the cervical cancer tissue of the patient is tested. Take 4 cervical cancer tissue samples: this (m T3, take 4 normal samples (10) , N2, N3, N4) perform f-based specificity. The R (MSP) knife is used to uniquely identify the MSP primer (U) of the unmethylated gene sequence, and the specific-identification-based gene-sequence touch MSP The primer (10) was used to perform the f-based specific pcR division. The results are shown in Figure 3. These six genes have methylation in individual cervical cancer tissue samples (Fig. 3, 3, 5, 7). In the column) / the same gene in the normal sample is less than the occurrence of thiolation phenomenon (as shown in Figure 9, paragraph 9, U, 13, 15); As described above, these six genes were used as screening methylation index genes for cervical cancer. • Example 3 Correlation between DNA methylation and gene expression in cervical cancer cell lines. Whether the expression of the gene is regulated by DNA f-based treatment, treatment of HeLa cervical cancer cells with 10 μΜ of DNA methyltransfer inhibitor 5,-aza-2,-de〇xycytidine (AZC) (Sigma Chemical Co.) After 4 days, the methylation-specific PCR (MSP) was used to examine the demethylation of the above six gene promoters; respectively, the MSP primer (U) which can specifically recognize the unmethylated gene sequence, and the specificity The Msp primer (Μ), which recognizes the thiolated gene sequence, was subjected to thiolation-specific PCR (MSP). The results are shown in Figure 4a. HeLa cervical cancer without treatment of 5'-aza-2'-deoxycytidine (AZC) In the cell line (AZC-), all of the six target genes have methylation (as shown in Figure 1A, the first ruin) 'and> (undetected unmethylated gene 20 (Figure 4A) In column 2), it can be detected in the treatment of 5'-aza-2'-deoxycytidine (AZC) for 4 days in HeLa cervical cancer cell line (AZC+). To the unmethylated target gene (shown in Figure 4a, block 4), showing the cervical cancer cell line treated with the 5'-aza-2'-deoxycytidine (AZC) Some of the above 6 target genes have been methylated. The performance of these 6 genes in HeLa cervical cancer cell lines was analyzed by RT-PCR. The results are shown in Figure 4B, after 5'-aza-2. The mRNA of these six target genes was detected in the cell line treated with '-deoxycytidine (AZC) (as shown in Figure 6 b, block 6), without 5'-aza-2'-deoxycytidine ( In the AZC) cell line, no mRNA of any target gene was detected (as shown in column 5 of Figure 4B). From the results, it can be seen that these six target genes are indeed in cervical cancer cells. DNA methylation regulates its gene expression. When the gene has methylation, the expression of the gene is inhibited. After the thiolation is removed, the target gene begins to manifest. In addition, the sulfite sequence (BS) was used to analyze whether the target gene has hypermethylation in the HeLa cervical cancer cell line. The results are shown in Figure 5, without 5'-aza-2'-de. In the xycytidine (AZC)-treated cell line (Fig. 5A), the number of highly methylated samples of the target gene was higher than that of the leg S'-azaldeoxyeytidine (A2C)-treated strain (Fig. 5B); Sulfite sequencing (BS) was analyzed in cervical squamous cell carcinoma (scc) and normal samples. The results are shown in Figure 6. In the cervical squamous cell carcinoma (scc) (Figure 6A) sample, the target gene The number of samples with methylation was also significantly higher than that of the normal sample (Fig. 6B). Example 4: Methylation analysis of target genes in clinical cervical samples, see Table 5, normal samples, low-grade squamous cell intraepithelial lesions, 1 call, high-scale squamous epithelial, Qianqing L), and miscellaneous wealth ( Scc) The average age of the sample is 21 -..Λ,.·.·.,..···. 1329743 11·3'39·7±9.6, 46·4± 14.4 and 53.3± ι〇9 years old ( ^7<0.05); the ratio of positive for the high-risk Hpv dna of the sample was: 214% of the normal sample, 47.7% of the low-grade squamous cell intraepithelial lesion (LSIL) sample. 'Highly squamous cell intraepithelial lesion (HSIL) sample 59 3%, 88.9% of squamous cell carcinoma (SCC) samples. The results showed that patients with Hpv were more likely to have different severity of cervical lesions (the odds ratios of LSIL, HSIL, and SCC samples were 3J, 5, 2, 29.9; 95% confidence intervals were 1.1-8.3, 2.1- 13.0, 11.5-77.7). In the cervical lesion samples of different severity, the methylation-specific PCR (MSp) was used to analyze the rhodamine state of the target gene, the methylation status of the target gene and the presence or absence of human papillomavirus (HPV). The results of the analysis are shown in Table 5. The six genes of SOX, pax, LMX1A, ΝΚΧ6·4, WT1 and ONECUT1 have high frequency methylation in squamous cell carcinoma (SCC). The proportion of methylation in cancer (SCC) samples was: 8丨5%, 94 4%, 89.9%, 80.4%, 77.8〇/〇, and 20.4〇/〇; and in the normal cervical samples, each gene methyl The ratios are: 2.2. /〇, 〇%, 6.7%, 11.9%, 11.1%, and 〇% (p 〇〇1); therefore, these 6 genes are methylated in squamous cell carcinoma (scc) samples compared to normal cervical samples. The situation is obviously much higher. The frequency of methylation of B NKX6-1 gene was 53 3% in LSIL samples, 55.1% in the positive samples, and 80.4% in SCC samples. Statistical results showed that patients with gene methylation were suffering from the disease. The risk of squamous cell carcinoma (scc) is higher (the odds ratio is 29,85%, and the confidence interval is 10.4-85.2). The frequency of methylation of the PAX1 gene was 2.3% in the LSIL sample, 42.1/〇 in the HSIL sample, and 94 4〇/〇 in the SCC sample; statistical results showed that patients with ρΑχι gene thiolation 'Dangerous squamous cell intraepithelial lesion L) and squamous cell carcinoma (scc) wind 22 T329743 risk compared to raj (HSIL and see samples have an odds ratio of >999.9; 95% confidence interval is < 0_ 1 ->999.9). The frequencies of SOX1, LMX1A and 0NECUT1 in the precancerous lesions (prec lesions) were very low, but the frequency of methylation in η muscle samples and scc samples increased significantly. 9 tear and 81 s% 'secret and 89 9% ' 7 4 〇 /. And 2〇为; δ10 results show that patients with s〇xl, LMX1A or 〇necuti gene methylation, Luo has a higher risk of squamous cell carcinoma (SCC) (the odds ratio of the three) They are respectively 20.2.124 5, 7 3 ; -· 95% confidence intervals are 25.8-999.9, 33.G-47G], 2.0-25.9). The frequency of methylation of the WT1 gene increases with the severity of the lesion. The frequency of wti gene methylation in normal samples is 111%, which is 2% in the sample and 42.1% in the Qingyi sample. In the SCC sample, it was 77 8%. The statistical results showed that patients with gene thiolation had a higher risk of high-grade squamous cell intraepithelial lesion (HSIL) and squamous cell carcinoma (scc). The odds ratios are 6 7 and 27 9 respectively; 95% confidence intervals are 2·219 8 , 9.8-78.9) » Diagnostic performance of DNA methylation indicators Analyze the sensitivity of DNA methylation (sens out and specificity, To determine whether the target gene can be used as a biomarker for cervical cancer screening and cervical cancer screening, the results are shown in Table 6. The HPV test is used to screen the sample for sensitivity and specificity of squamous cell carcinoma (SCC). They were 83.1% and 85.5% respectively (the 95% confidence interval was 77.6-88.5 and 79.6-91.4 respectively); and the methylation status of the five genes of SOX, PAX, LMX1A, NKX6-1 and WT1 were analyzed for screening. The presence or absence of squamous cell carcinoma (SCC), the methylation status of each gene against squamous cells The sensitivity of cancer (SCC) is 77.8%-94.4%, and its specificity is 88.1%·1〇〇%; when combined with HPV test and individual methylation index genes to detect disease (combined parallel 23 testing, CPT) (4) If the HPV job is required to be a positive or negative result, the cervical cancer screening result of the test sample is positive, and the sensitivity is between 97.2% and 98.2. 'Times at 66.7%·795%; when combined with the conversion test, CST) HPV test and individual methylation index genes, meaning that the first test, and HPV test positive samples for each indicator base - methyl The splicing test has a sensitivity of 69_4%-85.0%, and the specificity of all tests is 1%. When using both high-grade squamous cell intraepithelial lesions L) and squamous cell carcinoma (scc) diagnostic criteria, the sensitivity and specificity of screening for HPIL or SCC by HPV s was 75.0% and 85.5%, respectively. (The 95% confidence interval is 7〇·2-79_8 and 79.6-91.4 respectively); and the thiolation status of the five genes of SOX, PAX, LMX1A, ΝΚΧ6-1, and WH is analyzed to check whether the sample has HSIL or 50:: The methylation status of each gene is 1^1]^ or 8(:(: the sensitivity is between 57.4% and 76.2%, and the specificity is between 88.1%_100%; when the HpV test is combined with Individual methylation indicator genes to detect disease (CPT), the sensitivity can be increased to 85.8%-94.9%; and when the sequential combination (CST) RPV test and individual methylation indicator genes, the specificity of all tests 100%; when combined with (CPT) HPV test and s〇xl, PAX, LMX1A three methylation status test to screen samples for squamous cell carcinoma (SCC), the sensitivity is up to 1 〇〇%, and when the same method is used to check the presence or absence of HSIL or SCC in the sample, the sensitivity is 93.4%. In the individual thiolation index gene screening In the results of squamous cell carcinoma (SCC), the sensitivity of screening for the squamous cell carcinoma (scc) in the sample by the methylation status of the PAX1 gene alone is the highest, and its sensitivity is up to 94.4% (the 95% confidence interval is 95%). 90.0-98.8) Similarly, the sensitivity of screening for samples with or without HSIL or SCC in the methylation status of ραχϊ gene can reach 76.2% (95°/. confidence interval is 69.7-82.7), while the two tests are specific. Sex is 1%. 24 1329743

本令w碟枇客AdH¥,餓当^硪S-SE^醵tm* Ψ-4赛韌煤騷細屮tl^f^ HPV 9/42 (21.4%) 21/44 (47.7%) 3.3 (1.3-8.6) 3.1 (1.1-8.3) 32/54 (59.3%) 5.3 (2.1-13.3) 5.2 (2.1-13.0) 96/108 (88.9%) 29·: (11.3-75.8) 29.9 (11.5-77.7) /Κ0.0001 ONECUT1 0/45 (〇%) 3/45 (6.7%) 4/54 (7.4%) 2.3 (0.5-10.8) 2.3 (0.5-10.8) 22/108 (20.4%) 7.4 (2.1-25.7) 7.3 (2.0-25.9) ^=0.001 WT1 5/45 (11.1%) 9/45 (20.0%) 2.0 (0.6-6.5) 2.7 (0.8-9.3) 24/57 (42.1%) 5.8 (2.0-16.9) 6.7 (2.2-19.8) 84/108 (77.8%) 28.0 (10.0-78.8) 27.9 (9.8-78.9) ^<0.0001 NKX6-1 5/42 (11.9%) 24/45 (53.3%) 8.5 (2.8-25.5) 9.6 (3.1-30.4) „ 27/49 (55.1%) 9.1 (3.1-27.0) 9.6 (3.2-29.1) 86/107 (80.4%) 30.3 (10.6-86.5) 29.8 (10.4-85.2) ^<0.0001 LMX1A 3/45 (6.7%) 6/45 (13.3%) 2.2 (0.5-9.2) 2.2 (0.5-9.7) 8/50 (16.0%) 2.7 (0.6-10.7) .2.7 (0.7-10.9) 98/109 (89.9%) 124.7 (33.1-469.9) 124.5 (33.0-470.1) ρ<0.0001 PAX1 0/41 (〇%) 1/44 (2.3%) 24/57 (42.1%) >999.9 (<0.1 ->999.9) >999.9 (<0.1->999.9) 101/107 (94.4%) >999.9 (<0.1 ->999.9) >999.9 (<0.1->999.9) ρ<0.0001 SOX1 1/45 (2.2%) 2/45 (4.4%) 2.0 (0.2-23.4) 3.1 (0.3-36.7) 5/54 (9.3%) 4.5 (0.5-39.9) 5.1 (0.6-45.9) 88/108 (81.5%) 193.5 (25.2-1000) 200.2 (25.8-999.9) ^<0.0001 因 正常(n = 45) LSIL (n = 45) 勝算比 (95%信賴區間) 勝算比* (95%信賴區間) HSIL (η = 58) 勝算比 (95%信賴區間) 勝算比* (95%信賴區間) SCC (η = 109) 勝算比 (95%信賴區間) 勝算比* (95%信賴區間) 統計The order w disc hacker AdH ¥, hungry ^ 硪 S-SE ^ 醵 tm * Ψ 赛 赛 赛 韧 骚 屮 屮 HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP HP 1.3-8.6) 3.1 (1.1-8.3) 32/54 (59.3%) 5.3 (2.1-13.3) 5.2 (2.1-13.0) 96/108 (88.9%) 29·: (11.3-75.8) 29.9 (11.5-77.7) /Κ0.0001 ONECUT1 0/45 (〇%) 3/45 (6.7%) 4/54 (7.4%) 2.3 (0.5-10.8) 2.3 (0.5-10.8) 22/108 (20.4%) 7.4 (2.1-25.7 ) 7.3 (2.0-25.9) ^=0.001 WT1 5/45 (11.1%) 9/45 (20.0%) 2.0 (0.6-6.5) 2.7 (0.8-9.3) 24/57 (42.1%) 5.8 (2.0-16.9) 6.7 (2.2-19.8) 84/108 (77.8%) 28.0 (10.0-78.8) 27.9 (9.8-78.9) ^<0.0001 NKX6-1 5/42 (11.9%) 24/45 (53.3%) 8.5 (2.8- 25.5) 9.6 (3.1-30.4) „ 27/49 (55.1%) 9.1 (3.1-27.0) 9.6 (3.2-29.1) 86/107 (80.4%) 30.3 (10.6-86.5) 29.8 (10.4-85.2) ^< 0.0001 LMX1A 3/45 (6.7%) 6/45 (13.3%) 2.2 (0.5-9.2) 2.2 (0.5-9.7) 8/50 (16.0%) 2.7 (0.6-10.7) .2.7 (0.7-10.9) 98/ 109 (89.9%) 124.7 (33.1-469.9) 124.5 (33.0-470.1) ρ<0.0001 PAX1 0/41 (〇%) 1/44 (2.3%) 24/57 (42.1%) >999.9 (<0.1 - >999.9) >999.9 (<0.1->999.9) 101/107 (94.4%) >999.9 (<0.1 ->999.9) >999.9 (<0.1->999.9) ρ<0.0001 SOX1 1/45 (2.2%) 2/45 (4.4%) 2.0 (0.2-23.4) 3.1 (0.3-36.7 5/54 (9.3%) 4.5 (0.5-39.9) 5.1 (0.6-45.9) 88/108 (81.5%) 193.5 (25.2-1000) 200.2 (25.8-999.9) ^<0.0001 due to normal (n = 45) LSIL (n = 45) odds ratio (95% confidence interval) odds ratio * (95% confidence interval) HSIL (η = 58) odds ratio (95% confidence interval) odds ratio * (95% confidence interval) SCC (η = 109) Winning ratio (95% confidence interval) Winning ratio* (95% confidence interval) Statistics

S(N 1329743S(N 1329743

u •ί 赛 X S 堞 •Μ Μ 箸 ψϋ 專一性 (95%信賴區間) (79.6-91.4) (93.0-100.0) (63.3-89.1) (100.0-100.0) (100.0-100.0) (66.8-92.2) (100.0-100.0) (85.1-100.0) (57.8-85.1) (100.0-100.0) (80.7-99.3) (55.8-84.2) (100.0-100.0) (78.3-97.9) (52.4-80.9) (100.0-100.0) 勝算比 85.5 97.6 76.2 100.0 100.0 Ί9.5 100.0 92.9 71.4 100.0 90.0 70.0 100.0 88.1 66.7 100.0 靈敏度 (95%信賴區間) (70.2-79.8) (49.8-65.0) (80.4-91.2) (42.9-58.3) (69.7-82.7) (85.0-94.3) (58.0-72.5) (59.3-74.0) (84.5-94.1) (50.8-66.2) (65.4-79.5) (91.4-98.3) (51.3-66.7) (58.2-72.7) (85.8-94.8) (46.3-61.5) 勝算比 75.0 57.4 85.8 50.6 76.2 89.6 65.2 66.7 89.3 58.5 72.4 94.9 59.0 65.5 90.3 53.9 專一性 (95%信賴區間) (79.6-91.4) (93.0-100.0) (63.3-89.1) (100.0-100.0) (100.0-100.0). (66.8-92.2) (100.0-100.0) (85.1-100.0) (57.8-85.1) (100.0-100.0) (80.7-99.3) (55.8-84.2) (100.0-100.0) (78.3-97.9) (52.4-80.9) (100.0-100.0) 鱗狀細胞癌(see) 勝算比 85.5 97.6 76.2 100.0 100.0 79.5 100.0 92.9 71.4 100.0 90.0 70.0 100.0 88.1 66.7 100.0 靈敏度 (95%信賴區間) (77.6-88.5) (74.2-88.8) (95.6-100.0) (63.8-80.7) (90.0-98.8) (95.6-100.0) (78.3-91.8) (84.3-95.6) (95.7-100.0) (73.3-88.1) (72.9-87.9) (95.6-100.0) (62.4-79.6) (69.9-85.6) (94.1-100.0) (60.8-78.1) 勝算比 m 00 81.5 98.1 72.2 94.4 98.1 85.0 89.9 98.2 80.7 80.4 98.1 71.0 77.8 97.2 69.4 測試方式 單獨測試 單獨測試 CPT CST 單獨測試 CPT CST 單獨測試 CPT CST 單獨測試 CPT CST 單獨測試 CPT CST 生物標記 HPV SOX1 PAX1 LMX1A NKX6-1 WT1 vlxm+ (Γεοοοο.κ)<ν·69 (ε·ζ,64·68) 寸·ε6 (SOOOOK) S9 (ΟΌΟι-ΟΌΟι) 0001Hdo IXOS+ >s •Ο.Ιν'ν^ι,Λ.ι.ο^ι.,^.ϋ-Λ,Λ-Λ,ν,'ΛΑ.,ι.'. ·' ·.·.«! 1329743 實施例五卵巢腫瘤樣本内目標基因的甲基化分析u •ί赛XS 堞•Μ Μ 箸ψϋ Specificity (95% confidence interval) (79.6-91.4) (93.0-100.0) (63.3-89.1) (100.0-100.0) (100.0-100.0) (66.8-92.2) ( 100.0-100.0) (85.1-100.0) (57.8-85.1) (100.0-100.0) (80.7-99.3) (55.8-84.2) (100.0-100.0) (78.3-97.9) (52.4-80.9) (100.0-100.0) Winning Ratio 85.5 97.6 76.2 100.0 100.0 Ί9.5 100.0 92.9 71.4 100.0 90.0 70.0 100.0 88.1 66.7 100.0 Sensitivity (95% confidence interval) (70.2-79.8) (49.8-65.0) (80.4-91.2) (42.9-58.3) (69.7-82.7 (85.0-94.3) (58.0-72.5) (59.3-74.0) (84.5-94.1) (50.8-66.2) (65.4-79.5) (91.4-98.3) (51.3-66.7) (58.2-72.7) (85.8-94.8) (46.3-61.5) Winning ratio 75.0 57.4 85.8 50.6 76.2 89.6 65.2 66.7 89.3 58.5 72.4 94.9 59.0 65.5 90.3 53.9 Specificity (95% confidence interval) (79.6-91.4) (93.0-100.0) (63.3-89.1) (100.0- 100.0) (100.0-100.0). (66.8-92.2) (100.0-100.0) (85.1-100.0) (57.8-85.1) (100.0-100.0) (80.7-99.3) (55.8-84.2) (100.0-100.0) (78.3 -97.9) (52.4-80.9) (100.0-100.0) Squamous cell carcinoma (see) The odds ratio is 85.5 97.6 76.2 100.0 100.0 79.5 100.0 92.9 71.4 100.0 90.0 70.0 100.0 88.1 66.7 100.0 Sensitivity (95% confidence interval) (77.6-88.5) (74.2-88.8) (95.6-100.0) (63.8-80.7) (90.0-98.8) (95.6-100.0) (78.3-91.8) (84.3-95.6) (95.7-100.0) (73.3-88.1) (72.9-87.9) (95.6-100.0) (62.4-79.6) (69.9-85.6) (94.1-100.0) (60.8-78.1) Winning ratio m 00 81.5 98.1 72.2 94.4 98.1 85.0 89.9 98.2 80.7 80.4 98.1 71.0 77.8 97.2 69.4 Test method Individual test Individual test CPT CST Individual test CPT CST Individual test CPT CST Individual test CPT CST Individual test CPT CST Biomarker HPV SOX1 PAX1 LMX1A NKX6-1 WT1 vlxm+ ( Γεοοοο.κ)<ν·69 (ε·ζ,64·68) 寸·ε6 (SOOOOK) S9 (ΟΌΟι-ΟΌΟι) 0001Hdo IXOS+ >s •Ο.Ιν'ν^ι,Λ.ι.ο^ ι.,^.ϋ-Λ,Λ-Λ,ν,'ΛΑ.,ι.'. ·' ·.·.«! 1329743 Example 5 Methylation analysis of target genes in ovarian tumor samples

以甲基化特異性PCR (MSP)分析目標基因在卵巢腫瘤樣本中的甲基化 狀態,目標基因的甲基化狀態分析結果如表七所示,分析在各卵巢腫瘤樣 本中SOX卜PAX1以及LMX1A這3個基因的甲基化狀態,結果顯示, SOX卜PAX1以及LMX1A這3個基因在所有的卵巢良性腫瘤及卵巢邊緣 性腫瘤樣本内,均不具甲基化現象;而在卵巢惡性腫瘤樣本中,這3個基 因甲基化的頻率則大幅增加,S〇Xl基因甲基化的頻率為55 7〇/〇,ρΑχι基 因曱基化的頻率為49.2%,LMX1A基因甲基化的頻率則為32 8%。Methylation-specific PCR (MSP) was used to analyze the methylation status of target genes in ovarian tumor samples. The methylation status analysis results of the target genes are shown in Table 7. The SOX and PAX1 were analyzed in each ovarian tumor sample. The methylation status of the three genes of LMX1A showed that the three genes, SOX, PAX1 and LMX1A, were not methylated in all ovarian benign tumors and ovarian marginal tumor samples; The frequency of methylation of these three genes increased significantly. The frequency of methylation of S〇X1 gene was 55 7〇/〇, the frequency of 曱γ gene thiolation was 49.2%, and the frequency of methylation of LMX1A gene was It is 32 8%.

樣本 0/36 (0.0%) 0/36 (0.0〇/〇) 表七#巢腫瘤樣本中目標基因的甲基化狀態分析 、 基因 瘤㈣)0/6 (0.0%) 0/6 (0.0〇/〇) 0/6 (〇·〇%) 68/122 (55.70/0) 60/122 (49.2〇/〇) 40/122 (32.8%) 統計 卩 <0.0001 P< 0.0001 p< 〇.〇〇〇! 實施例六肝細胞樣本内目標基因的甲基化分析 以甲基化特異性PCR (MSP)分析目標基因在肝細胞樣本中的甲基化狀 L目標基因的甲基化狀態分析結果如表續示,在正綺細胞樣本中 SOX1基因f基化的鮮為7 7% ’嫌之下,具有異常病變崎細胞樣本 卜SOX1基因甲基化的頻率則大幅提高,在慢性肝炎樣本、肝硬化樣本以 及肝癌樣本中’ SOX1基因甲基化的頻率分別為33 3%、27 5%、53 。另 外,在正常肝細雜本中順6]基因曱基化的頻率(ι〇%)也明顯比在肝癌 27 1329743 樣本中ΝΚΧ6-1基因曱基化的頻率(57〇/〇)低 基因 樣本 _ 一 _Π ---- 正常肝細胞(η=13) - S0X1 ΝΚΧ6-1 1/13 (7.7%) 1/10 (10%) 慢性肝炎(η= 15) 5/15 (33.3%) 肝硬化(η=40) 11/40(27.5%) • 肝癌(η=54) 29/54 (53.7%) 12/21 (57%) 統計 ρ = 0.005 Ρ < 0.05 - 本發明所提供之癌症診斷的方法,與前述習用技術相互比較時,更具 有下列之優點: 1.本發明所提供之癌症篩檢的方法係以檢體中特定基因的甲基化程度作 為癌症有無的診斷指標,與習用子宮頸抹片及人類乳突病毒檢驗(HPV • testing)方法比較,本發明之癌症診斷方法的敏感性及專一性均較前述兩者 2·本發明所供之癌症筛檢的方法除了可作為第一線子宮頸癌的篩檢之 外’亦可合併或辅助人類乳突病毒檢驗(Hpvtesting)檢驗,作為第二線子宮 頸癌的篩檢’以達到更準確之子宮頸癌篩檢效果。 3_本發明所提供之癌症診斷的方法除可應用在子宮頸癌的檢測上,亦可應 用於其他癌症(如:卵巢癌、肝癌)的檢測,以輔助異常檢體之診斷。 上列詳細說明係針對本發明之一可行實施例之具體說明,惟該實施例 並非用以限制本發明之專利範圍,凡未脫離本發明技藝精神所為之等效實 28 丄j/y/43 或變更例如.又測者檢體中各目標基因甲基化程度的判斷方式等變化 之等效性實施例’均應包含於本案之專利範圍中。’ 综上所述,本案所提供之癌症診斷的方法確屬創新,並能較習用子宮 頸癌绵檢方法增進上述多項功效,應已充分符合新雜及進步性之法定發 ^ b月專利要件’麦依法提出申請,料貴局核准本件發明專利申請案以 ’ 勵發明,至感德便。 【圖式簡單說明】 • ® —為本發明癌症篩檢方法所使用之各目標基_CPG序列分析,各 基因中具有CpG序列者以「|」標示;各基因着引子合成片段位置以「―」 標示;各基因亞硫酸鹽定序(BS)引子合成片段位置以「㈠」標示; 二為針對本發明癌症篩檢方騎使用之各目標基因,在昆合的子宮 頸癌輯樣本(3〇個樣本混合)魏合的正常子宮職錄本(職樣本混合) 中,進行甲基化特異性PCR _>)分析之結果;帛丨欄為混合的正常子宮 頸抹片樣本(10個樣本混合),第2欄為混合的子宮頸癌組織樣本(3〇個樣本 _混合)’第3欄為陰性對照組(negative c〇ntr〇1),第4攔為陽性對照組㈣^ control),第5欄為空白對照組(水); 圖三為針對本發明癌症篩檢方法所使用之各目標基因,在侧的子宮 頸癌組織樣本與個別的正常子宮頸抹片樣本中,進行甲基化特異性pcR (MSP)分析之結果,丁卜T2、T3、T4代表4個個別的子宮頸癌組織樣本, Nl、Ν2、Ν3、Ν4代表4個個別的正常樣本,標示υ之欄位表示以可專一 辨認非甲基化基因序列的MSP引子(U)進行甲基化特異性pCR (MSp)之結 果,標示Μ之欄位表示以可專一辨認甲基化基因序列的Msp引子(M)進行 f基化特異性PCR (MSP)之結果; 29 圖四A為針對本發明癌症篩檢方法所使用之各目標基因,在沒有處理 5’、aza-2’-deoxycytidine 之 HeLa 子宮頸癌細胞株中(AZC- » 第 1、2 攔),以 及有處理5,-aza-2’-deoxycytidine之HeLa子宮頸癌細胞株中(A2C+,第3、 4攔),進行甲基化特異性PCR (MSP)分析之結果;標示u之欄位表示以可 專一辨認非甲基化基因序列的MSP引子(U)進行甲基化特異性j>cr (MSP) 之結果’標示Μ之攔位表示以可專一辨認甲基化基因序列的msp引子(Μ) 進行曱基化特異性PCR (MSP)之結果; 圖四B為針對本發明癌症篩檢方法所使用之各目標基因,在沒有處理 s’-aza-2’-deoxycytidine之HeLa子宮頸癌細胞株中(AZC-,第5欄),以及有 處理5’-aza-2’-deoxycytidine之HeLa子宮頸癌細胞株中(AZC+,第6欄), 進行RT-PCR分析之結果; ^ 圖五Α為針對本發明癌症篩檢方法所使用之各目標基因,在沒有處理 5’-aza-2’-deoxycytidine之HeLa子宮頸癌細胞株中,進行亞硫酸鹽定序(BS) 分析之結果; 圖五B為針對本發明癌症筛檢方法所使用之各目標基因,在有處理 5’-aza-2’-deoxycytidine之HeLa子宮頸癌細胞株中,進行亞硫酸鹽定序(BS) 分析之結果; 圖六A為針對本發明癌症篩檢方法所使用之各目標基因,在子宮頸鱗 狀細胞癌(SCC)中,進行亞硫酸鹽定序(BS)分析之結果;以及 圖六B為針對本發明癌症篩檢方法所使用之各目標基因,在正常樣本 中,進行亞硫酸鹽定序(BS)分析之結果。 【主要元件符號說明】 序列表 <110>賴鴻政 <120> —種癌症篩檢的方法. <160> 58 <210> 1'Sample 0/36 (0.0%) 0/36 (0.0〇/〇) Table VII #methylation status analysis of target genes in nest tumor samples, gene tumors (4)) 0/6 (0.0%) 0/6 (0.0〇 /〇) 0/6 (〇·〇%) 68/122 (55.70/0) 60/122 (49.2〇/〇) 40/122 (32.8%) Statistics卩<0.0001 P< 0.0001 p< 〇.〇〇 〇! Example 6 Methylation analysis of target genes in hepatocyte samples. Methylation-specific PCR (MSP) analysis of methylation status of target genes in hepatocyte samples. The table continues, in the positive sputum cell sample, the SOX1 gene f-based is 77%, and the frequency of methylation of the SOX1 gene with abnormal lesions is greatly increased. In the chronic hepatitis sample, liver The frequency of methylation of 'SOX1 gene in hardened samples and liver cancer samples was 33 3%, 27 5%, and 53%, respectively. In addition, the frequency of 曱6] gene thiolation in the normal liver fines (ι〇%) was also significantly lower than the frequency of ΝΚΧ6-1 gene thiolation in the liver cancer 27 1329743 sample (57〇/〇). _ 一_Π ---- Normal liver cells (η=13) - S0X1 ΝΚΧ6-1 1/13 (7.7%) 1/10 (10%) Chronic hepatitis (η= 15) 5/15 (33.3%) Liver Hardening (η=40) 11/40 (27.5%) • Liver cancer (η=54) 29/54 (53.7%) 12/21 (57%) Statistics ρ = 0.005 Ρ < 0.05 - Cancer diagnosis provided by the present invention The method of comparing with the prior art has the following advantages: 1. The method for screening cancer provided by the present invention is to use the degree of methylation of a specific gene in the sample as a diagnostic indicator for the presence or absence of cancer, and to use it. Comparing the Pap smear and the HPV test method, the sensitivity and specificity of the cancer diagnosis method of the present invention are both better than the above two methods. In addition to screening for first-line cervical cancer, 'Hpvtesting' test can also be combined or used as a second line of cervical cancer. Subject 'in order to achieve more accurate results of cervical cancer screening. 3_ The method for cancer diagnosis provided by the present invention can be applied to the detection of cervical cancer, and can also be applied to the detection of other cancers (such as ovarian cancer and liver cancer) to assist in the diagnosis of abnormal samples. The detailed description above is a detailed description of one of the possible embodiments of the present invention, but the embodiment is not intended to limit the scope of the invention, and the equivalent of 28 丄j/y/43 is not deviated from the spirit of the invention. Or, for example, the equivalent embodiment of the change in the degree of methylation of each target gene in the test subject, etc., should be included in the patent scope of the present application. In summary, the method of cancer diagnosis provided in this case is innovative, and can improve the above-mentioned functions more than the conventional method of cervical cancer. It should be fully in line with the new and progressive legal requirements. 'Maily filed an application according to law, and it is expected that your application for the invention patent application will be 'invented by the invention. [Simplified description of the schema] • ® - For each target _CPG sequence analysis used in the cancer screening method of the present invention, those having CpG sequences in each gene are indicated by "|"; each gene is introduced into the fragment by "-" Labeling; the position of the synthetic sulfite sequencing (BS) primers is indicated by "(a)"; the second is the target gene for the cancer screening of the present invention, and the cervical cancer sample in Kunming (3) One sample was mixed) the results of the methylation-specific PCR _> analysis in the normal uterus record (mixed sample) of Weihe; the sputum column was a mixed normal Pap smear sample (10 samples) Mixed), column 2 is a mixed cervical cancer tissue sample (3 samples _ mixed) 'column 3 is the negative control group (negative c〇ntr〇1), the fourth block is the positive control group (four) ^ control) Column 5 is a blank control group (water); Figure 3 is a target gene for the cancer screening method of the present invention, in a side cervical cancer tissue sample and an individual normal Pap smear sample, The result of the basic-specific pcR (MSP) analysis, Dingb T 2. T3 and T4 represent 4 individual cervical cancer tissue samples. Nl, Ν2, Ν3, Ν4 represent 4 individual normal samples, and the column indicating υ indicates MSP primers that can specifically identify the unmethylated gene sequence. (U) the result of methylation-specific pCR (MSp), the column indicating the Μ indicates the result of f-based specific PCR (MSP) with the Msp primer (M) which can specifically recognize the methylation gene sequence; 29 Figure 4A shows the target genes used in the cancer screening method of the present invention, in HeLa cervical cancer cell lines (AZC-», 1st and 2nd), which are not treated with 5', aza-2'-deoxycytidine, And the results of methylation-specific PCR (MSP) analysis in HeLa cervical cancer cell lines (A2C+, 3rd and 4th) treated with 5,-aza-2'-deoxycytidine; The methylation specificity j>cr (MSP) results from the MSP primer (U) that specifically recognizes the unmethylated gene sequence. The marker indicates that the msp primer specifically recognizes the methylation gene sequence ( Μ) Results of thiolation specific PCR (MSP); Figure 4B is for the cancer screening method of the present invention Each of the target genes in HeLa cervical cancer cell lines without treatment of s'-aza-2'-deoxycytidine (AZC-, column 5), and HeLa cervix with 5'-aza-2'-deoxycytidine treatment In the cancer cell line (AZC+, column 6), the results of RT-PCR analysis; ^ Figure Α is the target gene used in the cancer screening method of the present invention, without processing 5'-aza-2'- The results of sulfite sequencing (BS) analysis in the HeLa cervical cancer cell line of deoxycytidine; Figure 5B shows the target genes used in the cancer screening method of the present invention, in the treatment of 5'-aza-2 Results of sulfite sequencing (BS) analysis in HeLa cervical cancer cell lines of '-deoxycytidine; Figure 6A shows the target genes used in the cancer screening method of the present invention, in cervical squamous cell carcinoma (SCC), the result of sulfite sequencing (BS) analysis; and FIG. 6B is the sulfite sequencing (BS) in the normal sample for each target gene used in the cancer screening method of the present invention. The result of the analysis. [Explanation of main component symbols] Sequence Listing <110> Lai Hongzheng <120> - A method of cancer screening. <160> 58 <210> 1'

<211〉 2300 <212> DNA <213> 人屬智慧種(Homo sapiens) <400> 1 tctccacaag cactctcatc tcagggtgcc tcggggaggg cagaggagga atacttgggc 60 tcaaaagtcg tctttggacc actttcagat cagtctggtg gaaacggtag tgtgagcgct 120 atgctacttg agactgcgtt tgaaaatctc tttcacgttc ccaaatcaaa gccactttga 180 ggtttaagaa tgataaccac aggtgaatgc cttactcttt ccacgagcca ggcctttcct 240 ttgcatgacg cagaccggcg gctgagaccc gtcctgaggc cccgcctttc attcggttta 300 tgtggccccg cgcagttcac gcagttttct ccgttcttag gcaaccagct cgtgggaaat 360 tcactccaga aaagcgtgcg ccatatcatt attttgcgat tcaacaaact ttttcaactg 420 ttgttcagga actagattcc agatagatct tgttgtgttc ggccttccta gaaattcctt 480 ttccagagga agaagatccg ggttgggaag agtgcgtgac tatggccccg ggctcattga 540 aagactcctc cccacaaaag tttagggctg atactaaacg aagctatgga gccatgccca 600 cacaaatact ccccctttac ccgaattgtg gggcctggac tgtgaaggcc ttcgctgcaa 660 gagcgggcac tggcgaactt cagtgcacgc cgcggccgag aacggatgca gggcggggga 720 tggctgagcc gcctgatcct tgcagagaac ctgcaggggc cctcggaggg tatcccctgc 780 gtccaaggga gcgcccctcc ttttcagcac tcgggggaac tgagggcgac gtgccagccc 840 cgcactcaac tttccccttc cctgcaggca cagagttggc cggcgggggc agaggaggag 900 ctgggtctcc actgcgcccg tttaaacctg gccaggggct gcgtttcctc cccccacccc 960 acgacgatcc tttcttagtc ttcgcttttc aacccaatcg ttaatcattc ggaacgcgcg 1020 ggcggggagc ggcgaggagg gcgagctcgg ggttcgccgc cgccgccgcc gccgcgcgcg 1080 cgcgctcagg aagcggtgtg gctgtcaccc cctcccgggc ctcctccccc ctccttcctg 1140 ctttgctccc cctccttcct cccctcctcc ccgctccgcc gcccgcgccc agtgtatcta 1200 ctccctcccc acgtcactcg ccagcgcgcc atgcaaatca ccgccgccgc cggctcccat 1260 tggccgcggc gcgctcattt aatggcagcc cgggcccggc gtatggctgc tgggccccgc 1320 gcgccgccgg ccccgcgtgc gcctccgctc cgagcgcacg gccccgggca ggcagcgggc 1380 agcccatccc gggctcggcg gccccggctc tccggccctc tccgcgagcc cgcgctcctc 1440 ccgctgtccc cgggcccctc cctggctgca ccgtaatcgc cccctgcagg cccccctgcg 1500 cctccccccc cccgccactg gcgcctggct tcccccgggc acctgggacc agcacatgcc 1560 cagcgcacgc ggcgcgccgc cctgctagaa gttgcagcct ccgagttgga ggccgctgag 1620 gaccgagcgc aggaggaagg agacagcgcg cagcggcggc cggcgaggag acagcacacc 1680 ccgggccggg cccagcgcac cgctcccggc cccaaaagcg gagctgcaac ttggccacga 1740 ctgcacctgt ttgcaccgct ccgccgaggg cgcctgggct gcggtggcgg cgaagacggc 1800 1329743 gaccccgacc gtcggcctct ttggcaagtg gtttgtgcat caggagaaac tttccacctg 1860 cgagccgaac cggcgccgag tgcgtgtgtt tctgcctttt tttgttgtcg ttgcctccac 1920 ccctccccat tcttctctcc gctaggaccc ccccgccccc gtctcactcc gtctgaattc 1980 ctctccgtct ccctcccacc ccggccgtct atgctccagg ccctctcctc gcggtgccgg 2040 tgaacccgcc agccgccccg' atgtacagca tgatgatgga gaccgacctg cactcgcccg 2100 gcggcgccca ggcccccacg aacctctcgg gccccgccgg ggcgggcggc ggcgggggcg 2160 gaggcggggg cggcggcggc ggcgggggcg ccaaggccaa ccaggaccgg gtcaaacggc 2220 ccatgaacgc cttcatggtg tggtcccgcg ggcagcggcg caagatggcc caggagaacc 2280 ccaagatgca caactcggag 2300≪ 211> 2300 < 212 > DNA < 213 > person who is wise species (Homo sapiens) < 400 > 1 tctccacaag cactctcatc tcagggtgcc tcggggaggg cagaggagga atacttgggc 60 tcaaaagtcg tctttggacc actttcagat cagtctggtg gaaacggtag tgtgagcgct 120 atgctacttg agactgcgtt tgaaaatctc tttcacgttc ccaaatcaaa gccactttga 180 ggtttaagaa tgataaccac aggtgaatgc cttactcttt ccacgagcca ggcctttcct 240 ttgcatgacg cagaccggcg gctgagaccc gtcctgaggc cccgcctttc attcggttta 300 tgtggccccg cgcagttcac gcagttttct ccgttcttag gcaaccagct cgtgggaaat 360 tcactccaga aaagcgtgcg ccatatcatt attttgcgat tcaacaaact ttttcaactg 420 ttgttcagga actagattcc agatagatct tgttgtgttc ggccttccta gaaattcctt 480 ttccagagga agaagatccg ggttgggaag agtgcgtgac tatggccccg ggctcattga 540 aagactcctc cccacaaaag tttagggctg atactaaacg aagctatgga gccatgccca 600 cacaaatact ccccctttac ccgaattgtg Gggcctggac tgtgaaggcc ttcgctgcaa 660 gagcgggcac tggcgaactt cagtgcacgc cgcggccgag aacggatgca gggcggggga 720 tggctgagcc gcctgatcct tgcagagaac ctgcaggggc cctcggaggg tatcccctgc 780 g tccaaggga gcgcccctcc ttttcagcac tcgggggaac tgagggcgac gtgccagccc 840 cgcactcaac tttccccttc cctgcaggca cagagttggc cggcgggggc agaggaggag 900 ctgggtctcc actgcgcccg tttaaacctg gccaggggct gcgtttcctc cccccacccc 960 acgacgatcc tttcttagtc ttcgcttttc aacccaatcg ttaatcattc ggaacgcgcg 1020 ggcggggagc ggcgaggagg gcgagctcgg ggttcgccgc cgccgccgcc gccgcgcgcg 1080 cgcgctcagg aagcggtgtg gctgtcaccc cctcccgggc ctcctccccc ctccttcctg 1140 ctttgctccc cctccttcct cccctcctcc ccgctccgcc gcccgcgccc agtgtatcta 1200 ctccctcccc acgtcactcg ccagcgcgcc atgcaaatca ccgccgccgc cggctcccat 1260 tggccgcggc gcgctcattt aatggcagcc cgggcccggc gtatggctgc tgggccccgc 1320 gcgccgccgg ccccgcgtgc gcctccgctc cgagcgcacg gccccgggca ggcagcgggc 1380 agcccatccc gggctcggcg gccccggctc tccggccctc tccgcgagcc cgcgctcctc 1440 ccgctgtccc cgggcccctc cctggctgca ccgtaatcgc cccctgcagg cccccctgcg 1500 cctccccccc cccgccactg gcgcctggct tcccccgggc acctgggacc agcacatgcc 1560 cagcgcacgc ggcgcgccgc cctgctagaa gttgcagcct ccgagttgga ggccgctgag 1620 gaccgagcgc aggaggaagg agacagcgcg cagcggcggc cggcgaggag acagcacacc 1680 ccgggccggg cccagcgcac cgctcccggc cccaaaagcg gagctgcaac ttggccacga 1740 ctgcacctgt ttgcaccgct ccgccgaggg cgcctgggct gcggtggcgg cgaagacggc 1800 1329743 gaccccgacc gtcggcctct ttggcaagtg gtttgtgcat caggagaaac tttccacctg 1860 cgagccgaac cggcgccgag tgcgtgtgtt tctgcctttt tttgttgtcg ttgcctccac 1920 ccctccccat tcttctctcc gctaggaccc ccccgccccc gtctcactcc gtctgaattc 1980 ctctccgtct ccctcccacc ccggccgtct atgctccagg ccctctcctc gcggtgccgg 2040 tgaacccgcc agccgccccg 'atgtacagca tgatgatgga gaccgacctg cactcgcccg 2100 gcggcgccca ggcccccacg aacctctcgg gccccgccgg ggcgggcggc ggcgggggcg 2160 gaggcggggg cggcggcggc ggcgggggcg ccaaggccaa ccaggaccgg gtcaaacggc 2220 ccatgaacgc cttcatggtg tggtcccgcg ggcagcggcg caagatggcc caggagaacc 2280 ccaagatgca caactcggag 2300

<210> 2 <211> 1200 <212> DNA<210> 2 <211> 1200 <212> DNA

<213> 人属智慧種(Homo sapiens) <400> 2 agaaagacga ggccaggcca cctgggatag agtggtgcga gattccaccg ccagggagaa 60 aggaacttgt ccttcagacc tagagctgga gctatgcatt tggcctcccg ccggtcgcgc 120 ttggggacag gagggcgccg gatctatgcg ccccttagca gcagatcggg atccttttgc 180 ctcctgcccc ttctgtcact gcttggagag ggatgagttc tggtggctgg gcctggctgt 240 aggagacagg atttggaccg tgcccctctc gcatcaccga aatcaccccc actattccaa 300 gagtggttgg ctattaaacg tgaagatttc ctgagagaag gattgaggac ctggccagga 360 atgggacaca agttccgcct tgtgtcttcc tgacaggagc cctgcaccgc gctggacgct 420 caccttgaca ctcccagcca gctggggtac tgatcccacc cttccccggc cgctgccccg 480 ggagtgggga ggtagagaga gccacacccg aaacaccttt ccacgataaa cttttattct 540 ctatcttatt attaatggtg gcggaaataa aactaaaacc aaaacgaaaa cgagtactag 600 tactaacaca ctaatcaatt tgagatgact tccccctcat tcccaaagct agaggaggaa 660 gggggctgaa aggggctcag agcagtggaa ggtcccaggc ccagctgggg ttgggacgtg 720 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tagaggggtg ggttccgggg 780 gggtggtgga agagggccga ggggggagga tagaaggagg gggtagagtt tcagggcggg 840 gaggggggcg ctggggcgca gtgacgggaa ccaatgagct gccaactcgc gcgtctccgg 900 cgtgactgcc gagattgacg tggaggacac gtcaaattga ttcccgcacg ctgcagcctc 960 ccggtcagac gaatttctcc caatcggatg aagttcaccc tgggcctggg gtcgcgggcg 1020 tggagagtgt cctgggaggg ggcagcagcg gcggcggcag gccctggagc gggcggcagc 1080 gcgctccgct gccgcgcaca gcgcgtctcc agcccgcggc tgggccgccg cggctctcgg 1140 ctctcgggcg ccctccctct atgcctctca cgcggcggcg gcggcgccca agctctcccg 1200≪ 213 > person who is wise species (Homo sapiens) < 400 > 2 agaaagacga ggccaggcca cctgggatag agtggtgcga gattccaccg ccagggagaa 60 aggaacttgt ccttcagacc tagagctgga gctatgcatt tggcctcccg ccggtcgcgc 120 ttggggacag gagggcgccg gatctatgcg ccccttagca gcagatcggg atccttttgc 180 ctcctgcccc ttctgtcact gcttggagag ggatgagttc tggtggctgg gcctggctgt 240 aggagacagg atttggaccg tgcccctctc gcatcaccga aatcaccccc actattccaa 300 gagtggttgg ctattaaacg tgaagatttc ctgagagaag gattgaggac ctggccagga 360 atgggacaca agttccgcct tgtgtcttcc tgacaggagc cctgcaccgc gctggacgct 420 caccttgaca ctcccagcca gctggggtac tgatcccacc cttccccggc cgctgccccg 480 ggagtgggga ggtagagaga gccacacccg aaacaccttt ccacgataaa cttttattct 540 ctatcttatt attaatggtg gcggaaataa aactaaaacc aaaacgaaaa cgagtactag 600 tactaacaca ctaatcaatt tgagatgact tccccctcat tcccaaagct agaggaggaa 660 gggggctgaa aggggctcag agcagtggaa ggtcccaggc ccagctgggg ttgggacgtg 720 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tagaggggtg ggttccgggg 780 gggtggtgga agagggccga ggggggagga tagaaggagg gggtagagtt tcagggcggg 840 gaggggggcg ctggggcgca gtgacgggaa ccaatgagct gccaactcgc gcgtctccgg 900 cgtgactgcc gagattgacg tggaggacac gtcaaattga ttcccgcacg ctgcagcctc 960 ccggtcagac gaatttctcc caatcggatg aagttcaccc tgggcctggg gtcgcgggcg 1020 tggagagtgt cctgggaggg ggcagcagcg gcggcggcag gccctggagc gggcggcagc 1080 gcgctccgct gccgcgcaca gcgcgtctcc agcccgcggc tgggccgccg cggctctcgg 1140 ctctcgggcg ccctccctct atgcctctca cgcggcggcg gcggcgccca agctctcccg 1200

<210> 3 <211> 2350 <212> DNA <213> 人屬智慧種(Homo sapiens) 2 1329743 <400〉 3<210> 3 <211> 2350 <212> DNA <213> Human genius (Homo sapiens) 2 1329743 <400> 3

agccccccgc ccagcgcacc ccaccccctc tccgccgccg cgcacgcagc gccgcggccc 60 ctgtcagaag ctgcaggatc cgccccggcg aagcagggcc gactcgcacc caggaccctg 120 ggcctctgcc ttccctccta' gccttggaga agcaactggc cctctcctcc cgctgaggag 180 cgacgcgggc tggtaggacg tcccgggaag gccggcagct cgcgaccacg tcccggccca 240 gcctgggcgc gccgaggagc agagccagcg gccggcgttc gctccggctc cctccccggc 300 gctccgaagc cgagggcggc tcctccggct gcagtctcgg gggcgacgcc ttcccgggca 360 gaagcttcca gcagcgctcc gcaacttctc tctgctccag tcactgggag agagctcgcc 420 taccaggtaa gtaaggctgc ccgtgcctag gctgtggctc gggcgggcgt gtttctgaaa 480 gttgacttga aatgcatcca agagtgagcc gggccagccg gggctcctcc ccgaggcgac 540 tcttttgctt ctgcagacat tcccggcact ggccgactgg cgggaggacc tccccgcgcg 600 ccccgcacac cggctcctgc gcgcacccca acagagcgca gcgccaggag tccagaagcg 660 ggcgggacgc cctccgggtc ccttacagtg ccccttctcg acctggggca ggtgagggcc 720 gcaacggggc ggctgggacg cgggattgca aaccccatcg tcccgcgtgc ctggacccgg 780 tcgctcgagg gagggtaccc actctttata tacccaatat accccagtag ctgcgttcct 840 gcagagacgt cccgagggcc caccttcgta taggttgggg cggagtcgga ttcgggatgg 900 aaaacctggg gcaagggatg taggtggggg tgaggggggc aggagaagga gaaacgcagt 960 tggggggcgg aggcctaagt acataacgtg ttgacttcaa gtgaaatcag atcagccaga 1020 gcagttcgct gtgactgatc tctcctccca ccctacattc tcttggctgg accctatcct 1080 cctggctgat tctggtcgcc ctggacactc cctcagttct ttcccaggag tgcggtggct 1140 gctggcgccg agtcccagcg ggcacggacg tcagacgcat cgtttcttct cctctacagg 1200 tcctcccggc ccggcccgaa catgctggac ggcctaaaga tggaggagaa cttccaaagc 1260 gcgatcgaca cctcggcctc cttctcctcg ctgctgggtg agtgttcagg ccgtgcgtcc 1320 tgggcgcact ctctttccgc ttggcgctga.gctctggagc cccgctctct gggacctggt 1380 ccgcgatagg gaagctagcg cccctcttca tacactaaat tgagccccat cactatctgt 1440 ccgtcagtgc ttgtgggtcg tccctaccca aataaatcca acaagccgcc ccaggcctca 1500 cgcactgggc accgaattcc ccaaagccgc gaggggcggg cgagcttgtt cgtaggcgtc 1560 tgagtggcaa gtgattaaaa atacccaggg ctggattttt aatctcggag ctgatcgacg 1620 tctcataaat gccgccctct tctcgcggcc tagaggcaat agcatccgag acccgaggcc 1680 tggagcgccc aagttcgagg aggcttctct cccccaccaa ctccagcccc aatttcagcc 1740 atgggcaagg ccgagagaga cttttctggg ccagtaggca acgcagcgcg gggattagac 1800 cgcgcggctg ggccctaggc tccgcgttaa ttaactggag ctggatgtcg ggtcctgtgg 1860 gtcccccctc acaactcctt tgcagcgaca gaggaggagc agcgagtcaa ggaccccgga 1920 agagtgtcca cacacgggtc ttgcagagct gaagccagag attctggtta cggctccccc 1980 acccactctg cccttggagc ttttcaagtt tgggaagccc gtattttatt ttattttatt 2040 ttatttattt atttttagca ggagggagtt ttccttctgt cctttaaacc tcttgcctct 2100 ttcactcgga accgctagag cggcatgaat gtggaggatg agacagttct gctggagaaa 2160 ccaaatccag tgaggaatct ccccaccccc aacaccctag atgaaacgaa atcacgtgca 2220 ctgagcgccc ctctttgaac ccccctttcg ggaacttttg gacttgccca gcctcggaag 2280 agagcggaag ccagagcagg cagtacccgg gcgggcagcg ggtgcggatt tatgtataca 2340 gcgggcgtcg 2350 3agccccccgc ccagcgcacc ccaccccctc tccgccgccg cgcacgcagc gccgcggccc 60 ctgtcagaag ctgcaggatc cgccccggcg aagcagggcc gactcgcacc caggaccctg 120 ggcctctgcc ttccctccta 'gccttggaga agcaactggc cctctcctcc cgctgaggag 180 cgacgcgggc tggtaggacg tcccgggaag gccggcagct cgcgaccacg tcccggccca 240 gcctgggcgc gccgaggagc agagccagcg gccggcgttc gctccggctc cctccccggc 300 gctccgaagc cgagggcggc tcctccggct gcagtctcgg gggcgacgcc ttcccgggca 360 gaagcttcca gcagcgctcc gcaacttctc tctgctccag tcactgggag agagctcgcc 420 taccaggtaa gtaaggctgc ccgtgcctag gctgtggctc gggcgggcgt gtttctgaaa 480 gttgacttga aatgcatcca agagtgagcc gggccagccg gggctcctcc ccgaggcgac 540 tcttttgctt ctgcagacat tcccggcact ggccgactgg cgggaggacc tccccgcgcg 600 ccccgcacac cggctcctgc gcgcacccca acagagcgca gcgccaggag tccagaagcg 660 ggcgggacgc cctccgggtc ccttacagtg ccccttctcg acctggggca ggtgagggcc 720 gcaacggggc ggctgggacg cgggattgca aaccccatcg tcccgcgtgc ctggacccgg 780 tcgctcgagg gagggtaccc actctttata tacccaatat accccagtag ctgcgttcct 840 gcagagacgt Cccgagggc c caccttcgta taggttgggg cggagtcgga ttcgggatgg 900 aaaacctggg gcaagggatg taggtggggg tgaggggggc aggagaagga gaaacgcagt 960 tggggggcgg aggcctaagt acataacgtg ttgacttcaa gtgaaatcag atcagccaga 1020 gcagttcgct gtgactgatc tctcctccca ccctacattc tcttggctgg accctatcct 1080 cctggctgat tctggtcgcc ctggacactc cctcagttct ttcccaggag tgcggtggct 1140 gctggcgccg agtcccagcg ggcacggacg tcagacgcat cgtttcttct cctctacagg 1200 tcctcccggc ccggcccgaa catgctggac ggcctaaaga tggaggagaa cttccaaagc 1260 gcgatcgaca cctcggcctc cttctcctcg ctgctgggtg agtgttcagg ccgtgcgtcc 1320 tgggcgcact ctctttccgc ttggcgctga.gctctggagc cccgctctct gggacctggt 1380 ccgcgatagg gaagctagcg cccctcttca tacactaaat cactatctgt 1440 ccgtcagtgc ttgtgggtcg tccctaccca aataaatcca acaagccgcc ccaggcctca 1500 cgcactgggc accgaattcc ccaaagccgc gaggggcggg cgagcttgtt cgtaggcgtc 1560 tgagtggcaa gtgattaaaa atacccaggg ctggattttt aatctcggag ctgatcgacg 1620 tctcataaat gccgccctct tctcgcggcc tagaggcaat agcatccgag acccgaggcc 1680 tggagcgccc aagttcgagg tgagccccat Aggctt ctct cccccaccaa ctccagcccc aatttcagcc 1740 atgggcaagg ccgagagaga cttttctggg ccagtaggca acgcagcgcg gggattagac 1800 cgcgcggctg ggccctaggc tccgcgttaa ttaactggag ctggatgtcg ggtcctgtgg 1860 gtcccccctc acaactcctt tgcagcgaca gaggaggagc agcgagtcaa ggaccccgga 1920 agagtgtcca cacacgggtc ttgcagagct gaagccagag attctggtta cggctccccc 1980 acccactctg cccttggagc ttttcaagtt tgggaagccc gtattttatt ttattttatt 2040 ttatttattt atttttagca ggagggagtt ttccttctgt cctttaaacc tcttgcctct 2100 ttcactcgga accgctagag cggcatgaat Gtggaggatg agacagttct gctggagaaa 2160 ccaaatccag tgaggaatct ccccaccccc aacaccctag atgaaacgaa atcacgtgca 2220 ctgagcgccc ctctttgaac ccccctttcg ggaacttttg gacttgccca gcctcggaag 2280 agagcggaag ccagagcagg cagtacccgg gcgggcagcg ggtgcggatt tatgtataca 2340 gcgggcgtcg 2350 3

<210> 4 <211> 1250 <212> DNA <213> 人屬智慧種(Homo sapiens) <400> 4 aaagagcgga ggagccgcgg agagggtcag tttggccaga ggacaggact tagaagaccg 60 aagcctggga agccgcgaag aaaatgccag agaggagagt caaaggctga gagtgagagg 120 gagagaggga gcgggggtgg ggcgggggtc gccgggcccg tttgcagaag tggactgacg 180 agcggcgccg aaacccagcc gtcagacttt tcacacttag tcttttgttt ttctgtgttt 240 ttcctccccc tttttctttt caatattgca actccagtgc cccgtgggcc agagggcaag 300 gcgggtggag gtgaggacct gggagccgcg gggatccgtg gcactgccct ttctggcgca 360 gcagcccggg gcagcgtggg cggaggaagc ccgcacagag gctagatctc ccgcgggctg 420 gatgcgcttt ctccccgggc acagtgagcg tcgaatgcga atcagccgcg cgaccgaaag 480 agcagagcat cccagtaaga tcagaggagc gccacgggct gcacaaggcg tcctttgaac 540 ctccccaaag aaagcaagcc acccccaccc tccaacttca aagtggagat tcggcaacta 600 actttgctac aaactctccg gagccagcct gggttttgtt ttgcttattt cccgggggca 660 gaagatgaga agtagcgcac tttgaacagc taggaaaagt gaggaagaga gaatagccag 720 ggatcgaatc taggactcgc ggaacgaaag gactgcctag cccgccggga cgcctgcttt 780 tctcggcgag ctgccgcctc ccgcgtggag ggtttggaca tctctgctgc gcagctaggc 840 gagcaactcc cggcagcggc atttttggtt cagttggcag ctcgcctccg ggcgcgccga 900 gtgcctctcc gctcgcgccc tcggcgcttc cggctcctct gagccccgcg gggggcacca 960 gccagcgccc tcgctgcaag gctacggtct ccggcgtggc cgtgggatgt tagcggtggg 1020 ggcaatggag ggcacccggc agagcgcatt cctgctcagc agccctcccc tggccgccct 1080 gcacagcatg gccgagatga agaccccgct gtaccctgcc gcgtatcccc cgctgcctgc 1140 cggccccccc tcctcctcgt cctcgtcgtc gtcctcctcg tcgccctccc cgcctctggg 1200 cacccacaac ccaggcggcc tgaagccccc ggccacgggg gggctctcat 1250<210> 4 <211> 1250 <212> DNA <213> Human genius (Homo sapiens) <400> 4 aaagagcgga ggagccgcgg agagggtcag tttggccaga ggacaggact tagaagaccg 60 aagcctggga agccgcgaag aaaatgccag agaggagagt caaaggctga gagtgagagg 120 gagagaggga gcgggggtgg ggcgggggtc gccgggcccg tttgcagaag tggactgacg 180 agcggcgccg aaacccagcc gtcagacttt tcacacttag tcttttgttt ttctgtgttt 240 ttcctccccc tttttctttt caatattgca actccagtgc cccgtgggcc agagggcaag 300 gcgggtggag gtgaggacct gggagccgcg gggatccgtg gcactgccct ttctggcgca 360 gcagcccggg gcagcgtggg cggaggaagc ccgcacagag gctagatctc ccgcgggctg 420 gatgcgcttt ctccccgggc acagtgagcg tcgaatgcga atcagccgcg cgaccgaaag 480 agcagagcat cccagtaaga tcagaggagc gccacgggct gcacaaggcg tcctttgaac 540 ctccccaaag aaagcaagcc acccccaccc tccaacttca aagtggagat Tcggcaacta 600 actttgctac aaactctccg gagccagcct gggttttgtt ttgcttattt cccgggggca 660 gaagatgaga agtagcgcac tttgaacagc taggaaaagt gaggaagaga gaatagccag 720 ggatcgaatc taggactcgc ggaacgaaag gactgcctag cccgccggga c gcctgcttt 780 tctcggcgag ctgccgcctc ccgcgtggag ggtttggaca tctctgctgc gcagctaggc 840 gagcaactcc cggcagcggc atttttggtt cagttggcag ctcgcctccg ggcgcgccga 900 gtgcctctcc gctcgcgccc tcggcgcttc cggctcctct gagccccgcg gggggcacca 960 gccagcgccc tcgctgcaag gctacggtct ccggcgtggc cgtgggatgt tagcggtggg 1020 ggcaatggag ggcacccggc agagcgcatt cctgctcagc agccctcccc tggccgccct 1080 gcacagcatg gccgagatga agaccccgct gtaccctgcc gcgtatcccc cgctgcctgc 1140 cggccccccc tcctcctcgt cctcgtcgtc gtcctcctcg tcgccctccc cgcctctggg 1200 cacccacaac ccaggcggcc tgaagccccc ggccacgggg gggctctcat 1250

<210> 5 <211> 1700 <212> DNA <213> 人屬智慧種(Homo sapiens) <400> 5 tcactgagca ctccaggagt tccccaaact caagggtttt agatattcct aaccgccttc gcccggctta accagaatgg tacccgctcc gggcgccagg cttccctcct cactggaaag cgcctggcgc taactggtgc tatcctcgac ctgccgggct atgctccggc aaactagccg ggaaactaag aaacctcacc aactcccggc cagggccaca tcgtatccaa cggaatatac ctgttttccc tgctgctgac aagtaaacaa cacccaactg ggcagtgctc accctcccct gcaggctttg ggcttaaccg tccaatttta ctactagccg agggacgttc ggcggagtgg tcacccctcc ggcgtttgcc tagaagaatt ggtaggcggc atcgaaatac gctttcagtc 60 120 180 240 300 360 420 4 1329743≪ 210 > 5 < 211 > 1700 < 212 > DNA < 213 > person who is wise species (Homo sapiens) < 400 > 5 tcactgagca ctccaggagt tccccaaact caagggtttt agatattcct aaccgccttc gcccggctta accagaatgg tacccgctcc gggcgccagg cttccctcct cactggaaag cgcctggcgc taactggtgc tatcctcgac ctgccgggct atgctccggc aaactagccg ggaaactaag aaacctcacc aactcccggc cagggccaca tcgtatccaa cggaatatac ctgttttccc tgctgctgac aagtaaacaa cacccaactg ggcagtgctc accctcccct gcaggctttg ggcttaaccg tccaatttta ctactagccg agggacgttc ggcggagtgg tcacccctcc ggcgtttgcc tagaagaatt ggtaggcggc atcgaaatac gctttcagtc 60 120 180 240 300 360 420 4 1329743

ccgacctctg gaacccacaa agggccacct ctttccccag tgaccccaag atcatggcca 480 ctcccctacc cgacagttct agaagcaaga gccagactca agggtgcaaa gcaagggtat 540 acgcttcttt gaagcttgac tgagttcttt ctgcgctttc ctgaagttcc cgccctcttg 600 gagcctacct gcccctccct ccaaaccact cttttagatt aacaacccca tctctactcc 660 caccgcattc gaccctgccc ggactcactg cttacctgaa cggactctcc agtgagacga 720 ggctcccaca ctggcgaagg ccaagaaggg gaggtggggg gagggttgtg ccacaccggc 780 cagctgagag cgcgtgttgg gttgaagagg agggtgtctc cgagagggac gctccctcgg 840 acccgccctc accccagctg cgagggcgcc cccaaggagc agcgcgcgct gcctggccgg 900 gcttgggctg ctgagtgaat ggagcggccg agcctcctgg ctcctcctct tccccgcgcc 960 gccggcccct cttatttgag ctttgggaag ctgagggcag ccaggcagct ggggtaagga 1020 gttcaaggca gcgcccacac ccgggggctc tccgcaaccc gaccgcctgt ccgctccccc 1080 acttcccgcc ctccctccca cctactcatt cacccaccca cccacccaga gccgggacgg 1140 cagcccaggc gcccgggccc cgccgtctcc tcgccgcgat cctggacttc ctcttgctgc 1200 aggacccggc ttccacgtgt gtcccggagc cggcgtctca gcacacgctc cgctccgggc 1260 ctgggtgcct acagcagcca gagcagcagg gagtccggga cccgggcggc atctgggcca 1320 agttaggcgc cgccgaggcc agcgctgaac gtctccaggg ccggaggagc cgcggggcgt 1380 ccgggtctga gccgcagcaa atgggctccg acgtgcggga cctgaacgcg ctgctgcccg 1440 ccgtcccctc cctgggtggc ggcggcggct gtgccctgcc tgtgagcggc gcggcgcagt 1500 gggcgccggt gctggacttt gcgcccccgg gcgcttcggc ttacgggtcg ttgggcggc'c 1560 ccgcgccgcc accggctccg ccgccacccc cgccgccgcc gcctcactcc ttcatcaaac 1620 aggagccgag ctggggcggc gcggagccgc acgaggagca gtgcctgagc gccttcactg 1680 tccacttttc cggccagttc 1700ccgacctctg gaacccacaa agggccacct ctttccccag tgaccccaag atcatggcca 480 ctcccctacc cgacagttct agaagcaaga gccagactca agggtgcaaa gcaagggtat 540 acgcttcttt gaagcttgac tgagttcttt ctgcgctttc ctgaagttcc cgccctcttg 600 gagcctacct gcccctccct ccaaaccact cttttagatt aacaacccca tctctactcc 660 caccgcattc gaccctgccc ggactcactg cttacctgaa cggactctcc agtgagacga 720 ggctcccaca ctggcgaagg ccaagaaggg gaggtggggg gagggttgtg ccacaccggc 780 cagctgagag cgcgtgttgg gttgaagagg agggtgtctc cgagagggac gctccctcgg 840 acccgccctc accccagctg cgagggcgcc cccaaggagc agcgcgcgct gcctggccgg 900 gcttgggctg ctgagtgaat ggagcggccg agcctcctgg ctcctcctct tccccgcgcc 960 gccggcccct cttatttgag ctttgggaag ctgagggcag ccaggcagct ggggtaagga 1020 gttcaaggca gcgcccacac ccgggggctc tccgcaaccc gaccgcctgt ccgctccccc 1080 acttcccgcc ctccctccca cctactcatt cacccaccca cccacccaga gccgggacgg 1140 cagcccaggc gcccgggccc cgccgtctcc tcgccgcgat cctggacttc ctcttgctgc 1200 aggacccggc ttccacgtgt gtcccggagc cggcgtctca gcacacgctc cgctccgggc 1260 ctgggtgcct acag cagcca gagcagcagg gagtccggga cccgggcggc atctgggcca 1320 agttaggcgc cgccgaggcc agcgctgaac gtctccaggg ccggaggagc cgcggggcgt 1380 ccgggtctga gccgcagcaa atgggctccg acgtgcggga cctgaacgcg ctgctgcccg 1440 ccgtcccctc cctgggtggc ggcggcggct gtgccctgcc tgtgagcggc gcggcgcagt 1500 gggcgccggt gctggacttt gcgcccccgg gcgcttcggc ttacgggtcg ttgggcggc'c 1560 ccgcgccgcc accggctccg ccgccacccc cgccgccgcc gcctcactcc ttcatcaaac 1620 aggagccgag ctggggcggc gcggagccgc acgaggagca gtgcctgagc gccttcactg 1680 Tccacttttc cggccagttc 1700

<210> 6 <211> 1850 <212> DNA <213> 人屬智慧種(Homo sapiens) <400> 6 gaaagaaagc cgcggcatgt ggcggccggg tgtacgtctc aaactggggg cctccgcaca 60 cgtccccacc aggcccaaag accaggttcg attccagatt ggagcgtgac tgtgggaagg 120 gcgaaattac tcccgaagct gaattgattt tcaaatctgg aggcgtctct cggggacgcc 180 gggaaaaggg cgtccctagg ggccaagcgg agacccgcgc gccggcgtcc accctgtctg 240 cgtcagtact tctggaaagc aaccgcctcc gggtgcttta gcaggagggc cttgggagta 300 accgcaggga cggcccgagc ctccacggcc ccaccagcac ccggaagtta acatgggtac 360 cctccagggc actccctccg ctctccctcg cccccctcca caggccgagt catcggcgaa 420 gcggacgcac agccttaatt atgagctgag cgggagaagg agccaggcgg cgggggacag 480 tgaggtatgg cccgaactgg gattcttggc actgattact cctctcccca gggcatggat 540 gagaaagggt gggcaagtat gtatctggga ggacgaaggg tgccgggtca acggccgcca 600 aacggaccca gccctttaag caatctgcac cccaccccac cccaaccccc atcccccaat 660 aggccgtgaa ttcaagggtg ggaaagcgca ctcccagcag ccccccggga aataaagctt 720 agtgggctag agccgaaggg gtgatgacac agtccccagc tccccgggca agctgcaccg 780 5≪ 210 > 6 < 211 > 1850 < 212 > DNA < 213 > person who is wise species (Homo sapiens) < 400 > 6 gaaagaaagc cgcggcatgt ggcggccggg tgtacgtctc aaactggggg cctccgcaca 60 cgtccccacc aggcccaaag accaggttcg attccagatt ggagcgtgac tgtgggaagg 120 gcgaaattac tcccgaagct gaattgattt tcaaatctgg aggcgtctct cggggacgcc 180 gggaaaaggg cgtccctagg ggccaagcgg agacccgcgc gccggcgtcc accctgtctg 240 cgtcagtact tctggaaagc aaccgcctcc gggtgcttta gcaggagggc cttgggagta 300 accgcaggga cggcccgagc ctccacggcc ccaccagcac ccggaagtta acatgggtac 360 cctccagggc actccctccg ctctccctcg cccccctcca caggccgagt catcggcgaa 420 gcggacgcac agccttaatt atgagctgag cgggagaagg agccaggcgg cgggggacag 480 tgaggtatgg cccgaactgg gattcttggc actgattact cctctcccca gggcatggat 540 gagaaagggt gggcaagtat gtatctggga ggacgaaggg tgccgggtca Acggccgcca 600 aacggaccca gccctttaag caatctgcac cccaccccac cccaaccccc atcccccaat 660 aggccgtgaa ttcaagggtg ggaaagcgca ctcccagcag ccccccggga aataaagctt 720 agtgggctag agccgaaggg gtgatgacac agtccccagc tccccgggca a Gctgcaccg 780 5

ggaagcagca actggagaga gaggggcgat gtctccaagc acagcactcc agccgctaga 840 agcccgacac gagcgtcccc gggctgggag gacagagccc actcaagcaa gggaggcgag 900 cgagccaggc gcgagtctcc tgggattgca gcggcggccc caggtcgcgc tctgcgccaa 960 tctttcgcac gtgcccgcag ctccctggcc atccagcgcc gcagggaagg cgctgggccc 1020 cctccttcat ttgtaccggg acgccaaggg cctggcgcgc cgcgacctag ggggcggggg 1080 cgggcctcgc gcatgcgcgc tgcgcctggc gggcgtgagg gcgggccgct gcggcggcgg 1140 cggcggcggc taccgaaccg cggccacaga gtctgtaaca gtaacagagc catggctcaa 1200 gctggccagc ggggcgggca ggcagcagac gcggcaggcg cgcgggccgc ggcaggggag 1260 ccggagacct cagaatttta agaaagagag gggcgagagg tggccgaggc gggcgggctg 1320 gggcactgcg ctctcccaac ggcgcggatc ctctttggaa attaatatta aaaaaaaaaa 1380 agccgaggac gcagagggga aggtgggggg taagagggaa ggcgagacac acacacacac 1440 acacacgcac acgcacacac ggacacacac acacggagag agagagagag agagacagag 1500 ccccacagtg agaggaagga aggcaacagt cgccagcagc cgatgtgaag accggactcc 1560 gtgcgcccct cgccgcctct gcctggccac atcgatgttg tgtccgccgc ctgctcgccc 1620 ggatcacgat gaacgcgcag ctgaccatgg aagcgatcgg cgagctgcac ggggtgagcc 1680 atgagccggt gcccgcccct gccgacctgc tgggcggcag cccccacgcg cgcagctccg 1740 tggcgcaccg cggcagccac ctgccccccg cgcacccgcg ctccatgggc atggcgtccc 1800 tgctggacgg cggcagcggc ggcggagatt accaccacca ccaccgggcc 1850 <210> 7 <211> 24 <212> DNA <213〉人工序列 <400> 7 cgtttttttt ttttcgttat tggc 24ggaagcagca actggagaga gaggggcgat gtctccaagc acagcactcc agccgctaga 840 agcccgacac gagcgtcccc gggctgggag gacagagccc actcaagcaa gggaggcgag 900 cgagccaggc gcgagtctcc tgggattgca gcggcggccc caggtcgcgc tctgcgccaa 960 tctttcgcac gtgcccgcag ctccctggcc atccagcgcc gcagggaagg cgctgggccc 1020 cctccttcat ttgtaccggg acgccaaggg cctggcgcgc cgcgacctag ggggcggggg 1080 cgggcctcgc gcatgcgcgc tgcgcctggc gggcgtgagg gcgggccgct gcggcggcgg 1140 cggcggcggc taccgaaccg cggccacaga gtctgtaaca gtaacagagc catggctcaa 1200 gctggccagc ggggcgggca ggcagcagac gcggcaggcg cgcgggccgc ggcaggggag 1260 ccggagacct cagaatttta agaaagagag gggcgagagg tggccgaggc gggcgggctg 1320 gggcactgcg ctctcccaac ggcgcggatc ctctttggaa attaatatta aaaaaaaaaa 1380 agccgaggac gcagagggga aggtgggggg taagagggaa ggcgagacac acacacacac 1440 acacacgcac acgcacacac ggacacacac acacggagag agagagagag agagacagag 1500 ccccacagtg agaggaagga aggcaacagt cgccagcagc cgatgtgaag accggactcc 1560 gtgcgcccct cgccgcctct gcctggccac atcgatgttg tgtccgccgc ctgctcgccc 1620 ggatcacga t gaacgcgcag ctgaccatgg aagcgatcgg cgagctgcac ggggtgagcc 1680 atgagccggt gcccgcccct gccgacctgc tgggcggcag cccccacgcg cgcagctccg 1740 tggcgcaccg cggcagccac ctgccccccg cgcacccgcg ctccatgggc atggcgtccc 1800 tgctggacgg cggcagcggc ggcggagatt accaccacca ccaccgggcc 1850 < 210 > 7 < 211 > 24 < 212 > DNA < 213> Artificial Sequence <400> 7 cgtttttttt ttttcgttat tggc 24

<210> 8 <211> 20 <212> DNA <213>人工序列 <400> 8 cctacgctcg atcctcaacg 20 <210> 9 <211> 25 <212> DNA <213>人工序列 6 1329743 <400> 9 tgtttttttt tttttgttat tggtg <210> 10 <211> 22 <212> DNA <213〉人工序列 <400> 10 cctacactca atcctcaaca ac<210> 8 <211> 20 <212> DNA <213>Artificial sequence<400> 8 cctacgctcg atcctcaacg 20 <210> 9 <211> 25 <212> DNA <213> 6 1329743 <400> 9 tgtttttttt tttttgttat tggtg <210> 10 <211> 22 <212> DNA <213>artificial sequence <400> 10 cctacactca atcctcaaca ac

<210> 11 <211> 18 <212> DNA <213〉人工序列 <400> 11 tttagaagcg ggcgggac <210> 12 <211> 17 <212> DNA <213>人工序列 <400> 12 ccgaatccaa acacgcg <210〉 13 <211> 22 <212> DNA <213〉人工序列 <400> 13 gagtttagaa gtgggtggga tg<210> 11 <211> 18 <212> DNA <213>Artificial sequence <400> 11 tttagaagcg ggcgggac <210> 12 <211> 17 <212> DNA <213> Artificial sequence <;400> 12 ccgaatccaa acacgcg <210> 13 <211> 22 <212> DNA <213> artificial sequence<400> 13 gagtttagaa gtgggtggga tg

<210> 14 <211> 24 <212> DNA 1329743 <213〉人工序列 <400> 14 caaccaaatc caaacacaca aaac <210> 15 <211> 21 <212> DNA <213>人工序列 <400> 15 ttgtagcggc ggttttaggt c<210> 14 <211> 24 <212> DNA 1329743 <213>Artificial sequence <400> 14 caaccaaatc caaacacaca aaac <210> 15 <211> 21 <212> DNA <213> Sequence <400> 15 ttgtagcggc ggttttaggt c

<210> 16 <211> 20 <212> DNA <213>人工序列 <400> 16 gccaaaccct taacgtcccg <210> 17 <211> 24 <212> DNA <213〉人工序列 <400> 17 gattgtagtg gtggttttag gttg <210> 18 <211> 25 <212> DNA <213〉人工序列 <400> 18 caccaaaccc ttaacatccc aatac <210> 19 V.· J*· ,\*ι-V/. 1329743 <211> 20 <212> DNA <213>人工序列 <400> 19 tattttgggt ttggggtcgc <210> 20 <211> 18 <212> DNA <213>人工序列 <400> 20<210> 16 <211> 20 <212> DNA <213>Artificial sequence<400> 16 gccaaaccct taacgtcccg <210> 17 <211> 24 <212> DNA <213>Artificial sequence<213>;400> 17 gattgtagtg gtggttttag gttg <210> 18 <211> 25 <212> DNA <213>artificial sequence <400> 18 caccaaaccc ttaacatccc aatac <210> 19 V.· J*· , \* ι-V/. 1329743 <211> 20 <212> DNA <213>Artificial sequence<400> 19 tattttgggt ttggggtcgc <210> 20 <211> 18 <212> DNA <213><400> 20

cccgaaaacc gaaaaccg <210> 21 <211〉 24 <212> DNA <213〉人工序列 <400> 21 gtttattttg ggtttggggt tgtg <210> 22 <211> 21 <212> DNA <213〉人工序列 <400> 22 cacccaaaaa ccaaaaacca c <210> 23 <211> 20 <212> DNA <213〉人工序列 <400> 23 cgtggtcgtg ggatgttagc 1329743 <210> 24 <211〉 21 <212> DNA <213>人工序列 <400> 24 acaaacaacg aaaaatacgc g <210> 25 <211> 22 <212> DNA <213>人工序列 <400> 25 gtgtggttgt gggatgttag tg <210> 26 <211> 25 <212> DNA <213>人工序列 <400〉 26 caacaaacaa caaaaaatac acaacCccgaaaacc gaaaaccg <210> 21 <211> 24 <212> DNA <213>Artificial sequence <400> 21 gtttattttg ggtttggggt tgtg <210> 22 <211> 21 <212> DNA <213> Artificial sequence <400> 22 cacccaaaaa ccaaaaacca c <210> 23 <211> 20 <212> DNA <213>manual sequence <400> 23 cgtggtcgtg ggatgttagc 1329743 <210> 24 <211> 21 <;212> DNA <213>Artificial sequence<400> 24 acaaacaacg aaaaatacgc g <210> 25 <211> 22 <212> DNA <213>Artificial sequence <400> 25 gtgtggttgt gggatgttag tg <210&gt ; 26 <211> 25 <212> DNA <213>Artificial sequence<400> 26 caacaaacaa caaaaaatac acaac

<210> 27 <211> 21 <212> DNA <213〉人工序列 <400> 27 tgttgagtga atggagcggt c <210> 28 <211> 23 <212> DNA <213〉人工序列 <400> 28 ...J·、* 二.!·ν· 1329743 23 cgaaaaaccc ccgaatataa acg <210> 29 <211> 24 <212> DNA <213>人工序列 <400> 29 gttgttgagt gaatggagtg gttg 24<210> 27 <211> 21 <212> DNA <213>Artificial sequence <400> 27 tgttgagtga atggagcggt c <210> 28 <211> 23 <212> DNA <213><400> 28 ...J·,* II.!·ν· 1329743 23 cgaaaaaccc ccgaatataa acg <210> 29 <211> 24 <212> DNA <213>Artificial sequence <400> 29 gttgttgagt Gaatggagtg gttg 24

<210> 30 <211> 29 <212> DNA <213>人工序列 <400> 30 29 aattacaaaa aacccccaaa tataaacac <210> 31 <211> 26 <212> DNA <213〉人工序列 <400> 31 gttgttttyg ggtttttttt tggttg 26 <210〉 32 <211> 28 <212> DNA <213>人工序列 <400> 32 atttctccta atacacaaac cacttacc 28 <210〉 33 <211〉 29 <212> DNA <213>人工序列 11 1329743 <400> 33 tagttattgg gagagagtty gtttattag <210〉 34 <211> 24 <212> DNA <213〉人工序列 <400> 34 ctaccccaaa tcraaaaaaa acac<210> 30 <211> 29 <212> DNA <213>Artificial sequence <400> 30 29 aattacaaaa aacccccaaa tataaacac <210> 31 <211> 26 <212> DNA <213> Sequence <400> 31 gttgttttyg ggtttttttt tggttg 26 <210> 32 <211> 28 <212> DNA <213>Artificial Sequence<400> 32 atttctccta atacacaaac cacttacc 28 <210> 33 <211><212> DNA <213> Artificial sequence 11 1329743 <400> 33 tagttattgg gagagagtty gtttattag <210> 34 <211> 24 <212> DNA <213>Artificial sequence <400> 34 ctaccccaaa tcraaaaaaa acac

<210> 35 <211> 22 <212> DNA <213〉人工序列 <400> 35 gagtttattt aagtaaggga gg <210> 36 <211〉 30 <212> DNA <213>人工序列 <400> 36 caacttaaac cataactcta ttactattac <210> 37 <211> 22 <212> DNA <213〉人工序列 <400> 37 gtgttttggg agggggtagt ag <210> 38 <211> 21 1329743 <212〉 DNA <213〉人工序列 <400> 38 ccctcccraa ccctaectat' c <210> 39 <211> 22 <212> DNA <213〉人工序列 <400〉 39 gatagaagga gggggtagag tt<210> 35 <211> 22 <212> DNA <213>Artificial sequence <400> 35 gagtttattt aagtaaggga gg <210> 36 <211> 30 <212> DNA <213><400> 36 caacttaaac cataactcta ttactattac <210> 37 <211> 22 <212> DNA <213> artificial sequence <400> 37 gtgttttggg agggggtagt ag <210> 38 <211> 21 1329743 < 212> DNA <213>Artificial sequence <400> 38 ccctcccraa ccctaectat' c <210> 39 <211> 22 <212> DNA <213>Artificial sequence <400> 39 gatagaagga gggggtagag tt

<210> 40 <211> 21 <212> DNA <213>人工序列 <400> 40 tactaccccc tcccaaaaca c<210> 40 <211> 21 <212> DNA <213> artificial sequence <400> 40 tactaccccc tcccaaaaca c

<210> 41 <211〉 25 <212> DNA <213>人工序列 <400> 41 ggtatttttg gtttagttgg tagtt <210> 42 <211> 22 <212> DNA <213>人工序列 <400> 42 aataccctcc attaccccca cc .Ιι.ϊ'.'Λ* ilVlV.i;"·.'.'.»»!.!·. ·Λ:ι',-\·.ΐ'.·'·ί-^5 . •όί'"·' 1329743 <210〉 43 <211> 22 <212> DNA <213〉人工序列 <400> 43 ggtgggggta atggagggta tt •<210> 44 <211〉 24 <212> DNA <213>人工序列<210> 41 <211> 25 <212> DNA <213>Artificial sequence <400> 41 ggtatttttg gtttagttgg tagtt <210> 42 <211> 22 <212> DNA <213><400> 42 aataccctcc attaccccca cc .Ιι.ϊ'.'Λ* ilVlV.i;"..'.'.»»!.!·. ·Λ:ι',-\·.ΐ'.· '·ί-^5 . •όί'"·' 1329743 <210> 43 <211> 22 <212> DNA <213>Artificial Sequence <400> 43 ggtgggggta atggagggta tt •<210> 44 <211> 24 <212> DNA <213> artificial sequence

t <400> 44 cctaaattat aaatacccaa aaac <210> 45 <211> 24 <212> DNA <213>人工序列 <400> 45 gtgttgggtt gaagaggagg gtgt <210> 46 <211> 28 <212> DNA <213>人工序列 <400> 46 atcctacaac aaaaaaaaat ccaaaatc <210> 47 <211> 22 <212> DNA <213>人工序列 <400> 47 agacctagat gccaacaatt gg <210> 48 <211> 21 <212> DNA <213>人工序列 <400〉 48 gcaccactac gacttagtcc gt <400> 44 cctaaattat aaatacccaa aaac <210> 45 <211> 24 <212> DNA <213>manual sequence <400> 45 gtgttgggtt gaagaggagg gtgt <210> 46 <211> 28 <212> DNA <213>Artificial sequence <400> 46 atcctacaac aaaaaaaaat ccaaaatc <210> 47 <211> 22 <212> DNA <213>Artificial sequence <400> 47 agacctagat gccaacaatt gg <210> 48 <211> 21 <212> DNA <213>Artificial sequence<400> 48 gcaccactac gacttagtcc g

<210> 49 <211> 21 <212> DNA <213>人工序列 <400> 49 gctgcttctg ctgctgtgtc t <210> 50 <211> 21 <212> DNA <213〉人工序列 <400> 50 acgtttgggg cgcttatggt c<210> 49 <211> 21 <212> DNA <213>Artificial sequence <400> 49 gctgcttctg ctgctgtgtc t <210> 50 <211> 21 <212> DNA <213><400> 50 acgtttgggg cgcttatggt c

<210> 51 <211> 21 <212> DNA <213〉人工序列 <400> 51 caaaccctgg agcaaactca a <210> 52 <211〉 21 <212> DNA <213〉人工序列 13297¾ <400> 52 tgtgttgcct ctatccttcc c <210> 53 <211> 24 <212> DNA <213〉人工序列 <400> 53 cctacgctgc cctacaacca catc<210> 51 <211> 21 <212> DNA <213>Artificial sequence <400> 51 caaaccctgg agcaaactca a <210> 52 <211> 21 <212> DNA <213> 132973⁄4 <400> 52 tgtgttgcct ctatccttcc c <210> 53 <211> 24 <212> DNA <213>Artificial sequence <400> 53 cctacgctgc cctacaacca catc

<210> 54 <211> 24 <212> DNA <213〉人工序列 <4〇0> 54 tcacgccggc ccagtcttcc atct <210> 55 <211> 21 <212> DNA <213>人工序列 <400> 55 cacacgagac ccactttttc c <210> 56 <211> 20 <212> DNA <213〉人工序列 <400> 56 cccaacgaat aggccaaacg<210> 54 <211> 24 <212> DNA < 213 > artificial sequence <4〇0> 54 tcacgccggc ccagtcttcc atct <210> 55 <211> 21 <212> DNA <213> Artificial sequence <400> 55 cacacgagac ccactttttc c <210> 56 <211> 20 <212> DNA <213>artificial sequence <400> 56 cccaacgaat aggccaaacg

<210> 57 <211> 21 <212> DNA » k-s· .· · .k:1329743<210> 57 <211> 21 <212> DNA » k-s· .· · .k:1329743

<213〉人工序列 <400> 57 gctgtcccac ttacagatgc a 21 <210> 58 <211> 21 <212> DNA <213>人工序列 <400〉 58 tcaaagcgcc agctggagtt t 21 17<213>Artificial sequence <400> 57 gctgtcccac ttacagatgc a 21 <210> 58 <211> 21 <212> DNA <213> artificial sequence <400> 58 tcaaagcgcc agctggagtt t 21 17

Claims (1)

I1329743I1329743 申請專利範圍: 1 種子呂^員癌尚危險性篩檢的方法,該方法包含下列步驟: 步驟1提供一子宮頸樣本檢體; 步驟2檢測該子宮頸樣本檢體中目標基因的CpG序列甲基化狀態,該 目標基因儀由 SOX1、PAX1、LMX1A、NKX6-1、WT1 以及„ 0NECUT1所組成;以及 步驟3該目標基因若存在甲基化狀態,代表該檢體具有子宮頸癌之可 能性9 2·如申請專利範圍第1項所述之子宮頸癌篩檢的方法,其中該子宮頸樣本 檢體包含子宮頸抹片、子宮頸上皮細胞。 3.如申請專利範圍第1項所述之子宮頸癌篩檢的方法,其中該子宮頸樣本 檢體為異常之子宮頸抹片。 -4.如申凊專利範圍第1項所述之子宮頸癌篩檢的方法,其中該子宮頸樣本 檢體為人類乳突病毒檢驗(HPV testing)呈陽性(p0SitiVe)之子宮頸細胞檢 體。 (9 5. 如申請專利範圍第1項所述之子宮頸癌篩檢的方法,其中該目標基因的 CpG序列曱基化狀態檢測方法為甲基化特異性聚合酶連鎖反應 (methylation-specific PCR,MSP)、定量曱基化特異性聚合酶連鎖反應 (quantitative methylation-specific PCR,QMSP) ' 亞硫酸鹽定序(bisulfite sequencing,BS)、微陣列(microarrays)、質譜儀分析(mass 、 變性高效液相色譜(denaturing high-performance liquid diroimtography, DHPLC)、焦填酸定序(pyrosequencing)。 6.如申請專利範圍第1項所述之子宮頸癌篩檢的方法,其中該目標基因 1 1329743 S0X1係具有如SEQIDNa· !所*之财酸序列。 7. 如申請專利範圍第.〗項所述之子宮頸癌篩檢的方法 PAX1係具有如SEQIDNo: 2所示之核苷酸序列。 8. 如申請翻制第丨柄述之子麵闕檢的方法 LMX1A係具有如SEQIDNo: 3所示之核苷酸序列。 9. 如申請專利細第】項所述之子宮頸蘭檢的方法, NKX6-.1係具有如SEQIDN〇:4所示之核苷酸序列。 10. 如申請糊範㈣i項所叙竹麵騎的方法, WT1係具有如SEQ Π) No: 5所示之核苷酸序列。 11. 如申請專利範圍第i項所述之子宮頸癌篩檢的方法, ONECUT1係具有如SEQ ID No: 6所示之核苷酸序列。 ’其中該目標基因 其中該目標基因 其申該目標基因 其中該目標基因 其中該目標基因Patent application scope: 1 A method for screening a seed cancer risk, the method comprising the following steps: Step 1 provides a cervical sample sample; Step 2 detects a CpG sequence of a target gene in the cervical sample sample In the assimilation state, the target gene instrument consists of SOX1, PAX1, LMX1A, NKX6-1, WT1 and „0NECUT1; and step 3 if the target gene is methylated, indicating that the specimen has the possibility of cervical cancer The method of cervical cancer screening according to the first aspect of the invention, wherein the cervical sample comprises a Pap smear and a cervical epithelial cell. 3. The child as claimed in claim 1 The method for screening cervical cancer, wherein the cervical specimen is an abnormal smear of the cervix. The method for screening cervical cancer according to claim 1, wherein the cervical sample is A cervical cell sample that is positive for HPV testing (p0SitiVe). (9 5. A method for screening for cervical cancer as described in claim 1, wherein the CpG sequence of the target gene The thiolation state detection method is methylation-specific PCR (MSP), quantitative methylation-specific PCR (QMSP) 'sulfite sequencing (bisulfite sequencing, BS), microarrays, mass spectrometer analysis (mass, denaturing high-performance liquid diroimtography (DHPLC), pyrosequencing). The method for screening for cervical cancer according to Item 1, wherein the target gene 1 1329743 S0X1 has a nucleic acid sequence as SEQ ID Na.* 7. The cervical cancer screening as described in the scope of the patent application. The method PAX1 has a nucleotide sequence as shown in SEQ ID No: 2. 8. The method of applying the sub-surface detection of the 丨 述 LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM LM As for the method of cervical blue detection described in the patent application, the NKX6-.1 has the nucleotide sequence as shown in SEQ ID NO: 4. 10. The method of applying the bamboo surface riding as described in item (4) , WT 1 has a nucleotide sequence as shown in SEQ Π) No: 5. 11. The method of screening for cervical cancer according to the scope of claim i, ONECUT1 has a core as shown in SEQ ID No: 6. Glycosidic acid sequence. Wherein the target gene, wherein the target gene is the target gene, wherein the target gene, wherein the target gene
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