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IL291011A - Method for the compression of genome sequence data - Google Patents

Method for the compression of genome sequence data

Info

Publication number
IL291011A
IL291011A IL291011A IL29101122A IL291011A IL 291011 A IL291011 A IL 291011A IL 291011 A IL291011 A IL 291011A IL 29101122 A IL29101122 A IL 29101122A IL 291011 A IL291011 A IL 291011A
Authority
IL
Israel
Prior art keywords
compression
sequence data
genome sequence
genome
data
Prior art date
Application number
IL291011A
Other languages
Hebrew (he)
Original Assignee
Illumina Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Illumina Inc filed Critical Illumina Inc
Publication of IL291011A publication Critical patent/IL291011A/en

Links

Classifications

    • GPHYSICS
    • G06COMPUTING OR CALCULATING; COUNTING
    • G06FELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/20Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
    • G06F16/23Updating
    • G06F16/2365Ensuring data consistency and integrity
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/50Compression of genetic data
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10Sequence alignment; Homology search
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20Sequence assembly
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B45/00ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Chemical & Material Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Databases & Information Systems (AREA)
  • Data Mining & Analysis (AREA)
  • Bioethics (AREA)
  • Molecular Biology (AREA)
  • Computer Security & Cryptography (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Compression, Expansion, Code Conversion, And Decoders (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Medicines Containing Antibodies Or Antigens For Use As Internal Diagnostic Agents (AREA)
IL291011A 2019-09-11 2022-03-01 Method for the compression of genome sequence data IL291011A (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US16/567,211 US20210074381A1 (en) 2019-09-11 2019-09-11 Method for the compression of genome sequence data
PCT/US2020/050584 WO2021051019A1 (en) 2019-09-11 2020-09-11 Method for the compression of genome sequence data

Publications (1)

Publication Number Publication Date
IL291011A true IL291011A (en) 2022-05-01

Family

ID=72521682

Family Applications (2)

Application Number Title Priority Date Filing Date
IL291011A IL291011A (en) 2019-09-11 2022-03-01 Method for the compression of genome sequence data
IL291012A IL291012A (en) 2019-09-11 2022-03-01 Method for the compression of genome sequence data

Family Applications After (1)

Application Number Title Priority Date Filing Date
IL291012A IL291012A (en) 2019-09-11 2022-03-01 Method for the compression of genome sequence data

Country Status (16)

Country Link
US (3) US20210074381A1 (en)
EP (4) EP4029023B1 (en)
JP (4) JP2022552779A (en)
KR (2) KR20220061990A (en)
CN (4) CN120452561A (en)
AU (2) AU2020346961B2 (en)
BR (2) BR112022003494A2 (en)
CA (2) CA3287816A1 (en)
DK (1) DK4029023T3 (en)
ES (1) ES2964351T3 (en)
FI (1) FI4029023T3 (en)
IL (2) IL291011A (en)
MX (2) MX2022002930A (en)
MY (1) MY207633A (en)
WO (2) WO2021051021A1 (en)
ZA (1) ZA202201623B (en)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20210074381A1 (en) * 2019-09-11 2021-03-11 Enancio Method for the compression of genome sequence data
JP2025512716A (en) 2022-03-08 2025-04-22 イルミナ インコーポレイテッド Multipath Software Accelerated Genomic Read Mapping Engine
US12537033B2 (en) * 2023-04-20 2026-01-27 Macronix International Co., Ltd. Storage system for processing genome sequences

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN103336916B (en) * 2013-07-05 2016-04-06 中国科学院数学与系统科学研究院 A kind of sequencing sequence mapping method and system
US10902937B2 (en) * 2014-02-12 2021-01-26 International Business Machines Corporation Lossless compression of DNA sequences
CN107851137A (en) * 2015-06-16 2018-03-27 汉诺威戈特弗里德威廉莱布尼茨大学 Method for compressing genomic data
CN110168649A (en) * 2016-10-11 2019-08-23 耶诺姆希斯股份公司 The method and apparatus of compact representation for biological data
WO2018071078A1 (en) * 2016-10-11 2018-04-19 Genomsys Sa Method and apparatus for the access to bioinformatics data structured in access units
BR112019007359A2 (en) * 2016-10-11 2019-07-16 Genomsys Sa method and system for selective access to stored or transmitted bioinformatic data
US20210074381A1 (en) * 2019-09-11 2021-03-11 Enancio Method for the compression of genome sequence data

Also Published As

Publication number Publication date
KR20220061990A (en) 2022-05-13
JP7674340B2 (en) 2025-05-09
AU2020346961A1 (en) 2022-02-24
CN114402314B (en) 2025-05-09
IL291012A (en) 2022-05-01
EP4029023A1 (en) 2022-07-20
CN114341988A (en) 2022-04-12
US20210074381A1 (en) 2021-03-11
JP2022552779A (en) 2022-12-20
EP4318479B1 (en) 2025-12-24
WO2021051019A1 (en) 2021-03-18
CN114402314A (en) 2022-04-26
EP4029023B1 (en) 2023-09-06
EP4029022A1 (en) 2022-07-20
KR20220061991A (en) 2022-05-13
CA3287816A1 (en) 2025-11-29
AU2020346961B2 (en) 2026-02-12
CN121260237A (en) 2026-01-02
EP4318479A2 (en) 2024-02-07
EP4654208A2 (en) 2025-11-26
CN120452561A (en) 2025-08-08
EP4029022B1 (en) 2025-10-29
FI4029023T3 (en) 2023-11-28
CA3148960A1 (en) 2021-03-18
MX2022002930A (en) 2022-05-24
AU2020347285A1 (en) 2022-02-24
CA3148976A1 (en) 2021-03-18
BR112022003494A2 (en) 2022-05-24
ES2964351T3 (en) 2024-04-05
MY207633A (en) 2025-03-07
BR112022003488A2 (en) 2022-05-24
WO2021051021A1 (en) 2021-03-18
DK4029023T3 (en) 2023-11-27
CN114341988B (en) 2025-10-28
EP4318479A3 (en) 2024-04-10
US20240194296A1 (en) 2024-06-13
MX2022002929A (en) 2022-06-08
JP2025087760A (en) 2025-06-10
ZA202201623B (en) 2025-07-30
EP4029022C0 (en) 2025-10-29
US20220415441A1 (en) 2022-12-29
JP2022549580A (en) 2022-11-28
JP2025124637A (en) 2025-08-26

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